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#14 448.6 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/aether/aether-api/1.13.1/aether-api-1.13.1.jar
#14 448.7 Downloaded from central: https://repo.maven.apache.org/maven2/org/fusesource/hawtbuf/hawtbuf-proto/1.9/hawtbuf-proto-1.9.jar (27 kB at 102 kB/s)
#14 448.7 Downloading from central: https://repo.maven.apache.org/maven2/ch/qos/logback/logback-core/1.1.2/logback-core-1.1.2.jar
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#14 448.7 Downloading from central: https://repo.maven.apache.org/maven2/ch/qos/logback/logback-classic/1.1.2/logback-classic-1.1.2.jar
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#14 448.7 Progress (3): 232 kB | 90 kB | 4.1/428 kB
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#14 448.7 Progress (3): 90 kB | 229/428 kB | 61/271 kB
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#14 448.7 Downloaded from central: https://repo.maven.apache.org/maven2/ch/qos/logback/logback-core/1.1.2/logback-core-1.1.2.jar (428 kB at 1.4 MB/s)
#14 448.9 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/maven-bundle-plugin/2.5.0/maven-bundle-plugin-2.5.0.pom
#14 448.9 Progress (1): 4.1/4.7 kB
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#14 448.9 Downloading from central: https://repo.maven.apache.org/maven2/biz/aQute/bnd/bndlib/2.3.0/bndlib-2.3.0.pom
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#14 448.9 Downloading from central: https://repo.maven.apache.org/maven2/biz/aQute/bnd/parent/2.3.0/parent-2.3.0.pom
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#14 449.0 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.core/4.3.1/org.osgi.core-4.3.1.pom
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#14 449.0 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-core/2.0.7/maven-core-2.0.7.pom
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#14 449.0 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven/2.0.7/maven-2.0.7.pom
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#14 449.0 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-parent/5/maven-parent-5.pom
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#14 449.1 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-settings/2.0.7/maven-settings-2.0.7.pom
#14 449.1 Progress (1): 2.0 kB
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#14 449.1 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-model/2.0.7/maven-model-2.0.7.pom
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#14 449.1 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-parameter-documenter/2.0.7/maven-plugin-parameter-documenter-2.0.7.pom
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#14 449.1 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/reporting/maven-reporting-api/2.0.7/maven-reporting-api-2.0.7.pom
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#14 449.2 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/reporting/maven-reporting/2.0.7/maven-reporting-2.0.7.pom
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#14 449.2 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-sink-api/1.0-alpha-7/doxia-sink-api-1.0-alpha-7.pom
#14 449.2 Progress (1): 424 B
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#14 449.2 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia/1.0-alpha-7/doxia-1.0-alpha-7.pom
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#14 449.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-profile/2.0.7/maven-profile-2.0.7.pom
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-settings/2.0.7/maven-settings-2.0.7.jar (49 kB at 1.5 MB/s)
#14 450.5 Progress (4): 135/175 kB | 164/350 kB | 118/153 kB | 0.2/1.8 MB
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Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-parameter-documenter/2.0.7/maven-plugin-parameter-documenter-2.0.7.jar
#14 450.5 Progress (4): 139/175 kB | 164/350 kB | 122/153 kB | 0.3/1.8 MB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-core/2.0.7/maven-core-2.0.7.jar (153 kB at 3.1 MB/s)
#14 450.5 Progress (4): 175 kB | 350 kB | 0.7/1.8 MB | 21 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/reporting/maven-reporting-api/2.0.7/maven-reporting-api-2.0.7.jar
#14 450.5 Progress (4): 175 kB | 350 kB | 0.7/1.8 MB | 21 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/felix/maven-bundle-plugin/2.5.0/maven-bundle-plugin-2.5.0.jar (175 kB at 3.4 MB/s)
#14 450.5 Progress (3): 350 kB | 0.7/1.8 MB | 21 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-profile/2.0.7/maven-profile-2.0.7.jar
#14 450.5 Progress (3): 350 kB | 0.7/1.8 MB | 21 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.core/4.3.1/org.osgi.core-4.3.1.jar (350 kB at 6.1 MB/s)
#14 450.5 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-model/2.0.7/maven-model-2.0.7.jar
#14 450.5 Progress (2): 0.9/1.8 MB | 21 kB
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#14 450.5 Progress (1): 1.0/1.8 MB
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#14 450.5 Progress (1): 1.0/1.8 MB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/reporting/maven-reporting-api/2.0.7/maven-reporting-api-2.0.7.jar (9.9 kB at 133 kB/s)
#14 450.5 Progress (4): 1.3/1.8 MB | 35 kB | 76/86 kB | 29/88 kB
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Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-repository-metadata/2.0.7/maven-repository-metadata-2.0.7.jar
#14 450.5 Progress (4): 1.3/1.8 MB | 35 kB | 80/86 kB | 33/88 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-profile/2.0.7/maven-profile-2.0.7.jar (35 kB at 452 kB/s)
#14 450.5 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-error-diagnostics/2.0.7/maven-error-diagnostics-2.0.7.jar
#14 450.5 Progress (3): 1.4/1.8 MB | 86 kB | 53/88 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-model/2.0.7/maven-model-2.0.7.jar (86 kB at 971 kB/s)
#14 450.6 Progress (3): 1.6/1.8 MB | 88 kB | 20/24 kB
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Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-project/2.0.7/maven-project-2.0.7.jar
#14 450.6 Progress (3): 1.6/1.8 MB | 88 kB | 20/24 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-artifact/2.0.7/maven-artifact-2.0.7.jar (88 kB at 955 kB/s)
#14 450.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-registry/2.0.7/maven-plugin-registry-2.0.7.jar
#14 450.6 Progress (3): 1.7/1.8 MB | 24 kB | 14 kB
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#14 450.6 Downloading from central: https://repo.maven.apache.org/maven2/commons-cli/commons-cli/1.0/commons-cli-1.0.jar
#14 450.6 Progress (3): 1.8 MB | 14 kB | 4.1/117 kB
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#14 450.6 Progress (2): 1.8 MB | 29/117 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-api/2.0.7/maven-plugin-api-2.0.7.jar
#14 450.6 Progress (2): 1.8 MB | 33/117 kB
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#14 450.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-descriptor/2.0.7/maven-plugin-descriptor-2.0.7.jar
#14 450.6 Progress (3): 117 kB | 29 kB | 4.1/30 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-project/2.0.7/maven-project-2.0.7.jar (117 kB at 979 kB/s)
#14 450.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-artifact-manager/2.0.7/maven-artifact-manager-2.0.7.jar
#14 450.6 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-registry/2.0.7/maven-plugin-registry-2.0.7.jar (29 kB at 239 kB/s)
#14 450.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-monitor/2.0.7/maven-monitor-2.0.7.jar
#14 450.6 Progress (3): 30 kB | 13 kB | 4.1/37 kB
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#14 450.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-archiver/2.5/maven-archiver-2.5.jar
#14 450.6 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-api/2.0.7/maven-plugin-api-2.0.7.jar (13 kB at 100 kB/s)
#14 450.6 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-archiver/2.1/plexus-archiver-2.1.jar
#14 450.6 Progress (2): 37 kB | 4.1/57 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-descriptor/2.0.7/maven-plugin-descriptor-2.0.7.jar (37 kB at 269 kB/s)
#14 450.6 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-io/2.0.2/plexus-io-2.0.2.jar
#14 450.6 Progress (3): 57 kB | 10 kB | 4.1/22 kB
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#14 450.6 Progress (3): 10 kB | 22 kB | 147/184 kB
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#14 450.6 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-utils/3.0.10/plexus-utils-3.0.10.jar
#14 450.6 Progress (3): 22 kB | 184 kB | 4.1/58 kB
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#14 450.6 Progress (2): 184 kB | 41/58 kB
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#14 450.6 Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-utils/3.0.10/plexus-utils-3.0.10.jar (231 kB at 1.3 MB/s)
#14 450.8 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/wagon/wagon-ssh-external/3.5.2/wagon-ssh-external-3.5.2.pom
#14 450.8 Progress (1): 4.1 kB
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#14 450.8 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/wagon/wagon-providers/3.5.2/wagon-providers-3.5.2.pom
#14 450.8 Progress (1): 3.0 kB
Downloaded
#14 450.8 [output clipped, log limit 2MiB reached]
#14 549.1 SLF4J: No SLF4J providers were found.
#14 549.1 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 549.1 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 DONE 562.4s
#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.0s
#16 [12/13] RUN ant jars tools
#16 1.300 Buildfile: /bio-formats-build/bioformats/build.xml
#16 2.444 [echo] isSnapshot = true
#16 3.035
#16 3.035 copy-jars:
#16 3.035
#16 3.035 deps-formats-api:
#16 3.117 [echo] isSnapshot = true
#16 3.175
#16 3.175 install-pom:
#16 3.378 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/pom-bio-formats-8.0.0-SNAPSHOT.pom
#16 3.391 [resolver:install] Installing ome:pom-bio-formats:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 3.396 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 3.398
#16 3.398 jar-formats-api:
#16 3.555 [echo] isSnapshot = true
#16 3.750
#16 3.750 init-title:
#16 3.750 [echo] ----------=========== formats-api ===========----------
#16 3.750
#16 3.750 init-timestamp:
#16 3.754
#16 3.754 init:
#16 3.754
#16 3.754 copy-resources:
#16 3.755 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 3.771 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 3.773
#16 3.773 compile:
#16 3.983 [resolver:resolve] Resolving artifacts
#16 4.070 [javac] Compiling 53 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 4.729 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 4.729 [javac] import loci.common.ReflectedUniverse;
#16 4.729 [javac] ^
#16 4.830 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.830 [javac] int currentIndex = r.getCoreIndex();
#16 4.830 [javac] ^
#16 4.830 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.830 [javac] r.setCoreIndex(coreIndex);
#16 4.830 [javac] ^
#16 4.830 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.830 [javac] r.setCoreIndex(currentIndex);
#16 4.830 [javac] ^
#16 4.930 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.931 [javac] public void setCoreIndex(int no) {
#16 4.931 [javac] ^
#16 4.931 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.931 [javac] public int getCoreIndex() {
#16 4.931 [javac] ^
#16 5.031 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 5.031 [javac] public int coreIndexToSeries(int index)
#16 5.031 [javac] ^
#16 5.031 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 5.031 [javac] public int seriesToCoreIndex(int series)
#16 5.031 [javac] ^
#16 5.032 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.032 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 5.032 [javac] ^
#16 5.132 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.132 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 5.132 [javac] ^
#16 5.132 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.132 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 5.132 [javac] ^
#16 5.132 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.132 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 5.132 [javac] ^
#16 5.133 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.133 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 5.133 [javac] ^
#16 5.233 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 5.233 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 5.233 [javac] ^
#16 5.233 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 5.233 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 5.233 [javac] ^
#16 5.233 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.233 [javac] public void setCoreIndex(int no) {
#16 5.234 [javac] ^
#16 5.234 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.234 [javac] public int getCoreIndex() {
#16 5.234 [javac] ^
#16 5.234 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 5.234 [javac] public int coreIndexToSeries(int index) {
#16 5.234 [javac] ^
#16 5.234 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 5.234 [javac] public int seriesToCoreIndex(int series) {
#16 5.234 [javac] ^
#16 5.234 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.234 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 5.234 [javac] ^
#16 5.234 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.235 [javac] return getReader().getCoreMetadataList();
#16 5.235 [javac] ^
#16 5.235 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.235 [javac] return getReader().getCoreIndex();
#16 5.235 [javac] ^
#16 5.235 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.235 [javac] getReader().setCoreIndex(no);
#16 5.235 [javac] ^
#16 5.235 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 5.235 [javac] return getReader().seriesToCoreIndex(series);
#16 5.235 [javac] ^
#16 5.235 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 5.235 [javac] return getReader().coreIndexToSeries(index);
#16 5.235 [javac] ^
#16 5.336 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.336 [javac] public void setCoreIndex(int no) {
#16 5.336 [javac] ^
#16 5.336 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.336 [javac] public int getCoreIndex() {
#16 5.336 [javac] ^
#16 5.336 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 5.336 [javac] public int coreIndexToSeries(int index) {
#16 5.336 [javac] ^
#16 5.336 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 5.336 [javac] public int seriesToCoreIndex(int series) {
#16 5.336 [javac] ^
#16 5.336 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.336 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 5.337 [javac] ^
#16 5.337 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.337 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 5.337 [javac] ^
#16 5.337 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.337 [javac] return reader.getCoreIndex();
#16 5.337 [javac] ^
#16 5.337 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.337 [javac] reader.setCoreIndex(no);
#16 5.337 [javac] ^
#16 5.337 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 5.337 [javac] return reader.seriesToCoreIndex(series);
#16 5.337 [javac] ^
#16 5.337 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 5.337 [javac] return reader.coreIndexToSeries(index);
#16 5.337 [javac] ^
#16 5.528 [javac] Note: Some input files use unchecked or unsafe operations.
#16 5.528 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 5.528 [javac] 35 warnings
#16 5.529
#16 5.529 formats-api.jar:
#16 5.529 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 5.556 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 5.589 [resolver:install] Using default POM (ome:formats-api:8.0.0-SNAPSHOT)
#16 5.594 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.pom
#16 5.596 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar
#16 5.597 [resolver:install] Installing ome:formats-api:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 5.600 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 5.601
#16 5.601 deps-turbojpeg:
#16 5.601
#16 5.601 jar-turbojpeg:
#16 5.720 [echo] isSnapshot = true
#16 5.909
#16 5.909 init-title:
#16 5.909 [echo] ----------=========== turbojpeg ===========----------
#16 5.909
#16 5.909 init-timestamp:
#16 5.909
#16 5.909 init:
#16 5.909
#16 5.909 copy-resources:
#16 5.910 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 5.911
#16 5.911 compile:
#16 5.923 [resolver:resolve] Resolving artifacts
#16 5.928 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 6.668
#16 6.668 jar:
#16 6.673 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 6.864 [resolver:install] Using default POM (ome:turbojpeg:8.0.0-SNAPSHOT)
#16 6.874 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.pom
#16 6.877 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar
#16 6.879 [resolver:install] Installing ome:turbojpeg:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 6.884 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 6.885
#16 6.885 deps-formats-bsd:
#16 6.885
#16 6.885 jar-formats-bsd:
#16 6.995 [echo] isSnapshot = true
#16 7.189
#16 7.189 init-title:
#16 7.189 [echo] ----------=========== formats-bsd ===========----------
#16 7.189
#16 7.189 init-timestamp:
#16 7.189
#16 7.189 init:
#16 7.189
#16 7.189 copy-resources:
#16 7.190 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 7.193 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 7.194
#16 7.194 compile:
#16 7.417 [resolver:resolve] Resolving artifacts
#16 7.453 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 8.364 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 8.364 [javac] import loci.common.ReflectedUniverse;
#16 8.364 [javac] ^
#16 8.764 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.764 [javac] core.size() != reader.getCoreMetadataList().size())
#16 8.764 [javac] ^
#16 8.764 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.764 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 8.764 [javac] ^
#16 8.764 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.764 [javac] int n = reader.getCoreMetadataList().size();
#16 8.764 [javac] ^
#16 8.764 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 8.764 [javac] reader.setCoreIndex(coreIndex);
#16 8.764 [javac] ^
#16 8.765 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.765 [javac] int n = reader.getCoreMetadataList().size();
#16 8.765 [javac] ^
#16 8.765 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.765 [javac] int n = reader.getCoreMetadataList().size();
#16 8.765 [javac] ^
#16 8.765 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 8.765 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 8.765 [javac] ^
#16 8.765 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.765 [javac] int n = reader.getCoreMetadataList().size();
#16 8.765 [javac] ^
#16 8.765 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 8.765 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 8.765 [javac] ^
#16 8.765 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.765 [javac] int n = reader.getCoreMetadataList().size();
#16 8.765 [javac] ^
#16 8.765 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 8.765 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 8.765 [javac] ^
#16 8.765 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 8.765 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 8.765 [javac] ^
#16 8.765 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 8.765 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 8.765 [javac] ^
#16 8.765 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.765 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#16 8.765 [javac] ^
#16 8.765 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.766 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 8.766 [javac] ^
#16 8.766 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.766 [javac] seriesCount = reader.getCoreMetadataList().size();
#16 8.766 [javac] ^
#16 8.766 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.766 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 8.766 [javac] ^
#16 8.766 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.766 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#16 8.766 [javac] ^
#16 8.766 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.766 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 8.766 [javac] ^
#16 8.866 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.866 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#16 8.866 [javac] ^
#16 9.067 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 9.067 [javac] BitWriter out = new BitWriter();
#16 9.067 [javac] ^
#16 9.067 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 9.067 [javac] BitWriter out = new BitWriter();
#16 9.067 [javac] ^
#16 9.868 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:618: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.868 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 9.868 [javac] ^
#16 9.968 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 9.968 [javac] StreamTokenizer st = new StreamTokenizer(in);
#16 9.968 [javac] ^
#16 10.07 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.07 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 10.07 [javac] ^
#16 10.07 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 10.07 [javac] protected ReflectedUniverse r;
#16 10.07 [javac] ^
#16 10.07 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 10.07 [javac] r = new ReflectedUniverse();
#16 10.07 [javac] ^
#16 10.07 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:948: warning: [deprecation] NM in UNITS has been deprecated
#16 10.07 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 10.07 [javac] ^
#16 10.07 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:980: warning: [deprecation] MM in UNITS has been deprecated
#16 10.07 [javac] sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 10.07 [javac] ^
#16 10.07 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:993: warning: [deprecation] MM in UNITS has been deprecated
#16 10.07 [javac] String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 10.07 [javac] ^
#16 10.07 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:994: warning: [deprecation] MM in UNITS has been deprecated
#16 10.07 [javac] String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 10.07 [javac] ^
#16 10.07 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1013: warning: [deprecation] MM in UNITS has been deprecated
#16 10.07 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 10.07 [javac] ^
#16 10.07 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1017: warning: [deprecation] MM in UNITS has been deprecated
#16 10.07 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 10.07 [javac] ^
#16 10.07 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1023: warning: [deprecation] MM in UNITS has been deprecated
#16 10.07 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 10.07 [javac] ^
#16 10.07 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1071: warning: [deprecation] MM in UNITS has been deprecated
#16 10.07 [javac] offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 10.07 [javac] ^
#16 10.07 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#16 10.07 [javac] offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 10.07 [javac] ^
#16 10.17 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 10.17 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 10.17 [javac] ^
#16 10.27 [javac] Note: Some input files use unchecked or unsafe operations.
#16 10.27 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 10.27 [javac] 38 warnings
#16 10.30
#16 10.30 formats-bsd.jar:
#16 10.31 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 10.43 [resolver:install] Using default POM (ome:formats-bsd:8.0.0-SNAPSHOT)
#16 10.44 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.pom
#16 10.46 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar
#16 10.46 [resolver:install] Installing ome:formats-bsd:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 10.46 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 10.46
#16 10.46 deps-formats-gpl:
#16 10.46
#16 10.46 jar-formats-gpl:
#16 10.58 [echo] isSnapshot = true
#16 10.75
#16 10.75 init-title:
#16 10.75 [echo] ----------=========== formats-gpl ===========----------
#16 10.75
#16 10.75 init-timestamp:
#16 10.75
#16 10.75 init:
#16 10.75
#16 10.75 copy-resources:
#16 10.75 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 10.75 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 10.75
#16 10.75 compile:
#16 11.23 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
#16 11.47 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
#16 11.51 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
#16 12.06 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom (0 B at 0.0 KB/sec)
#16 12.06 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
#16 12.08 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
#16 12.10 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
#16 12.23 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom (0 B at 0.0 KB/sec)
#16 12.30 [resolver:resolve] Resolving artifacts
#16 12.31 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 12.31 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 12.35 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 12.35 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 12.38 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 12.38 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 12.77 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar (0 B at 0.0 KB/sec)
#16 12.77 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar (0 B at 0.0 KB/sec)
#16 12.79 [javac] Compiling 173 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 13.90 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 13.90 [javac] import loci.formats.codec.BitWriter;
#16 13.90 [javac] ^
#16 13.90 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 13.90 [javac] import loci.formats.codec.BitWriter;
#16 13.90 [javac] ^
#16 15.80 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#16 15.80 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#16 15.80 [javac] ^
#16 15.80 [javac] cast to Object for a varargs call
#16 15.80 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#16 15.80 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1257: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.80 [javac] BitWriter bits = null;
#16 15.80 [javac] ^
#16 15.80 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1259: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.80 [javac] bits = new BitWriter(planes[index].length / 8);
#16 15.80 [javac] ^
#16 16.10 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 16.10 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#16 16.10 [javac] ^
#16 16.40 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 16.40 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 16.40 [javac] ^
#16 16.40 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 16.40 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 16.40 [javac] ^
#16 16.70 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:199: warning: [deprecation] getAttributes() in Variable has been deprecated
#16 16.70 [javac] List<Attribute> attributes = variable.getAttributes();
#16 16.70 [javac] ^
#16 16.70 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:201: warning: [deprecation] getName() in CDMNode has been deprecated
#16 16.70 [javac] toReturn.put(attribute.getName(), arrayToString(attribute.getValues()));
#16 16.70 [javac] ^
#16 16.70 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:237: warning: [deprecation] getName() in CDMNode has been deprecated
#16 16.70 [javac] String groupName = group.getName();
#16 16.70 [javac] ^
#16 16.70 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getAttributes() in Group has been deprecated
#16 16.70 [javac] List<Attribute> attributes = group.getAttributes();
#16 16.70 [javac] ^
#16 16.70 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:240: warning: [deprecation] getName() in CDMNode has been deprecated
#16 16.70 [javac] String attributeName = attribute.getName();
#16 16.70 [javac] ^
#16 16.70 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:246: warning: [deprecation] getName() in CDMNode has been deprecated
#16 16.70 [javac] String variableName = variable.getName();
#16 16.70 [javac] ^
#16 16.70 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:310: warning: [deprecation] open(String) in NetcdfFile has been deprecated
#16 16.70 [javac] netCDFFile = NetcdfFile.open(currentId);
#16 16.70 [javac] ^
#16 16.70 [javac] Note: Some input files use unchecked or unsafe operations.
#16 16.70 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 16.70 [javac] 15 warnings
#16 16.74
#16 16.74 formats-gpl.jar:
#16 16.75 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 16.90 [resolver:install] Using default POM (ome:formats-gpl:8.0.0-SNAPSHOT)
#16 16.90 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#16 17.19 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#16 17.19 [resolver:install] Installing ome:formats-gpl:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 17.20 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 17.20
#16 17.20 deps-bio-formats-plugins:
#16 17.20
#16 17.20 jar-bio-formats-plugins:
#16 17.36 [echo] isSnapshot = true
#16 17.57
#16 17.57 init-title:
#16 17.57 [echo] ----------=========== bio-formats_plugins ===========----------
#16 17.57
#16 17.57 init-timestamp:
#16 17.57
#16 17.57 init:
#16 17.57
#16 17.57 copy-resources:
#16 17.57 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 17.58 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 17.58
#16 17.58 compile:
#16 17.85 [resolver:resolve] Resolving artifacts
#16 17.86 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 18.77 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.77 [javac] import loci.common.ReflectedUniverse;
#16 18.77 [javac] ^
#16 18.77 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.77 [javac] import loci.common.ReflectedUniverse;
#16 18.77 [javac] ^
#16 19.17 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 19.17 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 19.17 [javac] ^
#16 19.37 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.37 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 19.37 [javac] ^
#16 19.37 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.37 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 19.37 [javac] ^
#16 19.47 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.47 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 19.47 [javac] ^
#16 19.47 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.47 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 19.47 [javac] ^
#16 19.72 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 19.72 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 19.72 [javac] 7 warnings
#16 19.72
#16 19.72 bio-formats-plugins.jar:
#16 19.72 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 19.75 [resolver:install] Using default POM (ome:bio-formats_plugins:8.0.0-SNAPSHOT)
#16 19.76 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#16 19.82 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#16 19.82 [resolver:install] Installing ome:bio-formats_plugins:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 19.82 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 19.83
#16 19.83 deps-bio-formats-tools:
#16 19.83
#16 19.83 jar-bio-formats-tools:
#16 19.92 [echo] isSnapshot = true
#16 20.09
#16 20.09 init-title:
#16 20.09 [echo] ----------=========== bio-formats-tools ===========----------
#16 20.09
#16 20.09 init-timestamp:
#16 20.09
#16 20.09 init:
#16 20.09
#16 20.09 copy-resources:
#16 20.09 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 20.09
#16 20.09 compile:
#16 20.33 [resolver:resolve] Resolving artifacts
#16 20.34 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 21.38
#16 21.38 bio-formats-tools.jar:
#16 21.39 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 21.39 [resolver:install] Using default POM (ome:bio-formats-tools:8.0.0-SNAPSHOT)
#16 21.40 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#16 21.62 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#16 21.62 [resolver:install] Installing ome:bio-formats-tools:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 21.62 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 21.62
#16 21.62 deps-tests:
#16 21.62
#16 21.62 jar-tests:
#16 21.81 [echo] isSnapshot = true
#16 22.03
#16 22.03 init-title:
#16 22.03 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 22.03
#16 22.03 init-timestamp:
#16 22.03
#16 22.03 init:
#16 22.03
#16 22.03 copy-resources:
#16 22.03 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 22.04
#16 22.04 compile:
#16 22.38 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 22.46 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 22.49 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 22.89 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 23.31 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom (0 B at 0.0 KB/sec)
#16 23.33 [resolver:resolve] Resolving artifacts
#16 23.35 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 23.39 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 23.41 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 23.80 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 24.08 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 24.09 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 25.00 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:605: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 25.00 [javac] int index = unflattenedReader.getCoreIndex();
#16 25.00 [javac] ^
#16 25.00 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:606: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 25.00 [javac] reader.setCoreIndex(index);
#16 25.00 [javac] ^
#16 25.20 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2247: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 25.20 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 25.20 [javac] ^
#16 25.20 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2413: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 25.20 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 25.20 [javac] ^
#16 25.47 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 25.47 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 25.47 [javac] ^
#16 25.47 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 25.47 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 25.47 [javac] ^
#16 25.47 [javac] Note: Some input files use unchecked or unsafe operations.
#16 25.47 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 25.47 [javac] 6 warnings
#16 25.47
#16 25.47 tests.jar:
#16 25.48 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 25.49 [resolver:install] Using default POM (ome:test-suite:8.0.0-SNAPSHOT)
#16 25.50 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.pom
#16 25.52 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.jar
#16 25.52 [resolver:install] Installing ome:test-suite:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 25.52 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 25.52
#16 25.52 jars:
#16 25.52
#16 25.52 copy-jars:
#16 25.52
#16 25.52 deps-formats-api:
#16 25.58 [echo] isSnapshot = true
#16 25.68
#16 25.68 install-pom:
#16 25.86 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/pom-bio-formats-8.0.0-SNAPSHOT.pom
#16 25.86 [resolver:install] Installing ome:pom-bio-formats:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 25.87 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 25.87
#16 25.87 jar-formats-api:
#16 25.98 [echo] isSnapshot = true
#16 26.20
#16 26.20 init-title:
#16 26.20 [echo] ----------=========== formats-api ===========----------
#16 26.20
#16 26.20 init-timestamp:
#16 26.20
#16 26.20 init:
#16 26.20
#16 26.20 copy-resources:
#16 26.20
#16 26.20 compile:
#16 26.35 [resolver:resolve] Resolving artifacts
#16 26.36
#16 26.36 formats-api.jar:
#16 26.38 [resolver:install] Using default POM (ome:formats-api:8.0.0-SNAPSHOT)
#16 26.38 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.pom
#16 26.38 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar
#16 26.39 [resolver:install] Installing ome:formats-api:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 26.39 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 26.39
#16 26.39 deps-turbojpeg:
#16 26.39
#16 26.39 jar-turbojpeg:
#16 26.60 [echo] isSnapshot = true
#16 26.77
#16 26.77 init-title:
#16 26.77 [echo] ----------=========== turbojpeg ===========----------
#16 26.77
#16 26.77 init-timestamp:
#16 26.77
#16 26.77 init:
#16 26.77
#16 26.77 copy-resources:
#16 26.77
#16 26.77 compile:
#16 26.78 [resolver:resolve] Resolving artifacts
#16 26.78
#16 26.78 jar:
#16 26.79 [resolver:install] Using default POM (ome:turbojpeg:8.0.0-SNAPSHOT)
#16 26.80 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.pom
#16 26.80 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar
#16 26.80 [resolver:install] Installing ome:turbojpeg:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 26.81 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 26.81
#16 26.81 deps-formats-bsd:
#16 26.81
#16 26.81 jar-formats-bsd:
#16 26.90 [echo] isSnapshot = true
#16 27.06
#16 27.06 init-title:
#16 27.06 [echo] ----------=========== formats-bsd ===========----------
#16 27.06
#16 27.06 init-timestamp:
#16 27.06
#16 27.06 init:
#16 27.06
#16 27.06 copy-resources:
#16 27.06
#16 27.06 compile:
#16 27.27 [resolver:resolve] Resolving artifacts
#16 27.29
#16 27.29 formats-bsd.jar:
#16 27.33 [resolver:install] Using default POM (ome:formats-bsd:8.0.0-SNAPSHOT)
#16 27.33 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.pom
#16 27.33 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar
#16 27.33 [resolver:install] Installing ome:formats-bsd:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 27.34 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 27.34
#16 27.34 deps-formats-gpl:
#16 27.34
#16 27.34 jar-formats-gpl:
#16 27.43 [echo] isSnapshot = true
#16 27.60
#16 27.60 init-title:
#16 27.60 [echo] ----------=========== formats-gpl ===========----------
#16 27.60
#16 27.60 init-timestamp:
#16 27.60
#16 27.60 init:
#16 27.60
#16 27.60 copy-resources:
#16 27.60
#16 27.60 compile:
#16 27.86 [resolver:resolve] Resolving artifacts
#16 27.88
#16 27.88 formats-gpl.jar:
#16 27.93 [resolver:install] Using default POM (ome:formats-gpl:8.0.0-SNAPSHOT)
#16 27.93 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#16 27.93 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#16 27.93 [resolver:install] Installing ome:formats-gpl:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 27.93 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 27.94
#16 27.94 deps-bio-formats-plugins:
#16 27.94
#16 27.94 jar-bio-formats-plugins:
#16 28.03 [echo] isSnapshot = true
#16 28.20
#16 28.20 init-title:
#16 28.20 [echo] ----------=========== bio-formats_plugins ===========----------
#16 28.20
#16 28.20 init-timestamp:
#16 28.20
#16 28.20 init:
#16 28.20
#16 28.20 copy-resources:
#16 28.20
#16 28.20 compile:
#16 28.49 [resolver:resolve] Resolving artifacts
#16 28.51
#16 28.51 bio-formats-plugins.jar:
#16 28.53 [resolver:install] Using default POM (ome:bio-formats_plugins:8.0.0-SNAPSHOT)
#16 28.53 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#16 28.53 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#16 28.54 [resolver:install] Installing ome:bio-formats_plugins:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 28.54 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 28.54
#16 28.54 deps-bio-formats-tools:
#16 28.54
#16 28.54 jar-bio-formats-tools:
#16 28.64 [echo] isSnapshot = true
#16 28.82
#16 28.82 init-title:
#16 28.82 [echo] ----------=========== bio-formats-tools ===========----------
#16 28.82
#16 28.82 init-timestamp:
#16 28.82
#16 28.82 init:
#16 28.82
#16 28.82 copy-resources:
#16 28.82
#16 28.82 compile:
#16 29.08 [resolver:resolve] Resolving artifacts
#16 29.09
#16 29.09 bio-formats-tools.jar:
#16 29.09 [resolver:install] Using default POM (ome:bio-formats-tools:8.0.0-SNAPSHOT)
#16 29.09 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#16 29.09 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#16 29.10 [resolver:install] Installing ome:bio-formats-tools:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 29.10 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 29.10
#16 29.10 deps-tests:
#16 29.10
#16 29.10 jar-tests:
#16 29.19 [echo] isSnapshot = true
#16 29.38
#16 29.38 init-title:
#16 29.38 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 29.38
#16 29.38 init-timestamp:
#16 29.38
#16 29.38 init:
#16 29.38
#16 29.38 copy-resources:
#16 29.38
#16 29.38 compile:
#16 29.66 [resolver:resolve] Resolving artifacts
#16 29.67
#16 29.67 tests.jar:
#16 29.68 [resolver:install] Using default POM (ome:test-suite:8.0.0-SNAPSHOT)
#16 29.69 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.pom
#16 29.69 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.jar
#16 29.69 [resolver:install] Installing ome:test-suite:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 29.69 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 29.69
#16 29.69 jars:
#16 29.69
#16 29.69 tools:
#16 29.69 [echo] ----------=========== bioformats_package ===========----------
#16 29.79 [echo] isSnapshot = true
#16 30.03
#16 30.03 init-timestamp:
#16 30.03
#16 30.03 bundle:
#16 30.28 [resolver:resolve] Resolving artifacts
#16 30.29 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.33 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.0.23-SNAPSHOT/ome-common-6.0.23-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.35 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.38 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.38 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.45 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.47 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.52 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.53 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.76 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.82 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.84 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.90 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.91 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.92 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.92 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.2/joda-time-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.10 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.0-jre/guava-32.0.0-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.60 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.60 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.60 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.61 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.70 [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.71 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.71 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.3.7-SNAPSHOT/ome-xml-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.77 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.3.7-SNAPSHOT/specification-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.83 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.85 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.0.4-SNAPSHOT/ome-codecs-1.0.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.86 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.5-SNAPSHOT/ome-jai-0.1.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.00 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.21/aircompressor-0.21.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.02 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.09 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.13 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.13 [unzip] Expanding: /home/build/.m2/repository/commons-lang/commons-lang/2.6/commons-lang-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.17 [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.19 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.66 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.68 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.72 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.7/commons-lang3-3.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.79 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.89 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.91 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.93 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.94 [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.17 [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.25 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.31 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.40 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/ome-mdbtools-5.3.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.42 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.3.8-SNAPSHOT/metakit-5.3.8-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.42 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/ome-poi-5.3.10-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.55 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.56 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.01 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.02 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.9/httpclient-4.5.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.14 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.19 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.9/httpmime-4.5.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.20 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.21 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.28.0/sqlite-jdbc-3.28.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.38 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.39 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.40 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.41 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.42 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.45 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.85 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.07 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.43 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 41.28 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 41.91 [resolver:install] Using default POM (ome:bioformats_package:8.0.0-SNAPSHOT)
#16 41.92 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/bioformats_package-8.0.0-SNAPSHOT.pom
#16 41.92 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/bioformats_package-8.0.0-SNAPSHOT.jar
#16 41.96 [resolver:install] Installing ome:bioformats_package:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 41.96 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 41.99
#16 41.99 BUILD SUCCESSFUL
#16 41.99 Total time: 40 seconds
#16 DONE 43.0s
#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.0s
#18 exporting to image
#18 exporting layers
#18 exporting layers 13.4s done
#18 writing image sha256:bb4851657488f1162f21eedd856d7bcb44465ead83128ae0e2f47d248bd177d5 done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#18 DONE 13.4s
Finished: SUCCESS
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