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Started by upstream project "BIOFORMATS-test-repo" build number 270 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins1034323467494311397.sh + '[' hitachi = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_42612_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 11:37:18,930 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 11:37:18,931 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 11:37:18,931 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 11:37:18,932 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 11:37:18,932 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 11:37:18,933 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 11:37:18,933 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 11:37:18,933 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 11:37:18,934 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 11:37:18,934 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 11:37:18,934 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 11:37:18,935 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 11:37:19,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 11:37:19,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 11:37:19,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 11:37:19,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 11:37:19,128 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 11:37:19,128 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 11:37:19,128 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 11:37:19,128 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 11:37:19,128 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 11:37:19,129 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 11:37:19,129 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 195 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-27 11:37:19,138] [main] java.version = 17.0.2 [testng] 11:37:19,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 11:37:19,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:37:19,181 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-27_11-37-19.log] [testng] 11:37:19,183 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-11-27 11:37:19,185] [main] testng.directory = /data [testng] [2024-11-27 11:37:19,185] [main] testng.configDirectory = /config [testng] [2024-11-27 11:37:19,194] [main] testng.multiplier = 1.0 [testng] [2024-11-27 11:37:19,195] [main] testng.in-memory = false [testng] [2024-11-27 11:37:19,195] [main] testng.allow-missing = false [testng] [2024-11-27 11:37:19,195] [main] user.language = en [testng] [2024-11-27 11:37:19,195] [main] user.country = ${user.country} [testng] [2024-11-27 11:37:19,196] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-27 11:37:35,781] [main] ---------------------------------------- [testng] [2024-11-27 11:37:35,782] [main] Total files: 21 [testng] [2024-11-27 11:37:35,782] [main] Scan time: 16.585 s (789 ms/file) [testng] [2024-11-27 11:37:35,782] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-27 11:37:58,974] [pool-1-thread-1] Initializing /data/stefan/001_q04.txt: [testng] 11:37:58,975 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 11:37:58,975 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:37:58,976 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-27_11-37-58.log] [testng] 11:37:58,977 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60e19e2a - End of configuration. [testng] [2024-11-27 11:37:59,912] [pool-1-thread-12] Initializing /data/stefan/001_q18.txt: [testng] 11:37:59,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 11:37:59,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:37:59,913 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-27_11-37-59.log] [testng] 11:37:59,913 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17ca5ee7 - End of configuration. [testng] [2024-11-27 11:38:01,530] [pool-1-thread-11] Initializing /data/stefan/001_q10.txt: [testng] 11:38:01,531 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 11:38:01,531 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:38:01,532 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-27_11-38-01.log] [testng] 11:38:01,533 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2732151b - End of configuration. [testng] [2024-11-27 11:38:04,268] [pool-1-thread-10] Initializing /data/stefan/001_q01.txt: [testng] 11:38:04,268 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 11:38:04,268 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:38:04,268 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-27_11-38-04.log] [testng] 11:38:04,269 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26dbe939 - End of configuration. [testng] [2024-11-27 11:38:05,831] [pool-1-thread-9] Initializing /data/stefan/001_q15.txt: [testng] 11:38:05,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 11:38:05,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:38:05,832 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-27_11-38-05.log] [testng] 11:38:05,833 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17c3db9a - End of configuration. [testng] [2024-11-27 11:38:07,151] [pool-1-thread-8] Initializing /data/stefan/001_q13.txt: [testng] 11:38:07,151 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 11:38:07,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:38:07,152 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-27_11-38-07.log] [testng] 11:38:07,153 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6fc0c9a - End of configuration. [testng] [2024-11-27 11:38:08,408] [pool-1-thread-7] Initializing /data/stefan/001_q09.txt: [testng] 11:38:08,409 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 11:38:08,409 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:38:08,409 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-27_11-38-08.log] [testng] 11:38:08,410 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c7461fc - End of configuration. [testng] [2024-11-27 11:38:10,602] [pool-1-thread-6] Initializing /data/stefan/001_q06.txt: [testng] 11:38:10,603 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 11:38:10,603 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:38:10,603 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-27_11-38-10.log] [testng] 11:38:10,604 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50a15581 - End of configuration. [testng] [2024-11-27 11:38:11,646] [pool-1-thread-5] Initializing /data/stefan/001_q12.txt: [testng] 11:38:11,646 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 11:38:11,646 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:38:11,647 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-27_11-38-11.log] [testng] 11:38:11,647 |-INFO in ch.qos.logback.core.sift.SiftProcessor@277a4981 - End of configuration. [testng] [2024-11-27 11:38:13,955] [pool-1-thread-4] Initializing /data/stefan/001_q17.txt: [testng] 11:38:13,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 11:38:13,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:38:13,956 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-27_11-38-13.log] [testng] 11:38:13,957 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40d18827 - End of configuration. [testng] [2024-11-27 11:38:15,682] [pool-1-thread-3] Initializing /data/stefan/001_q14.txt: [testng] 11:38:15,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 11:38:15,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:38:15,683 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-27_11-38-15.log] [testng] 11:38:15,683 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ff6aef3 - End of configuration. [testng] [2024-11-27 11:38:16,991] [pool-1-thread-2] Initializing /data/stefan/001_q11.txt: [testng] 11:38:16,991 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 11:38:16,991 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:38:16,992 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-27_11-38-16.log] [testng] 11:38:16,992 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73d1549d - End of configuration. [testng] [2024-11-27 11:38:39,174] [pool-1-thread-10] Initializing /data/stefan/001_q05.txt: [testng] [2024-11-27 11:38:41,108] [pool-1-thread-1] Initializing /data/stefan/001_q16.txt: [testng] [2024-11-27 11:38:42,924] [pool-1-thread-3] Initializing /data/stefan/001_q03.txt: [testng] [2024-11-27 11:38:44,449] [pool-1-thread-6] Initializing /data/stefan/001_q08.txt: [testng] [2024-11-27 11:38:46,931] [pool-1-thread-9] Initializing /data/stefan/001_q07.txt: [testng] [2024-11-27 11:38:49,216] [pool-1-thread-4] Initializing /data/stefan/001_q02.txt: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 52 seconds Finished: SUCCESS