![[Jenkins]](/jenkins/static/695419c3/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 311 originally caused by: Started by upstream project "Trigger" build number 333 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins16387552969884191692.sh + '[' imagepro = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_49371_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 04:38:42,324 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 04:38:42,326 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 04:38:42,326 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:38:42,327 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:38:42,327 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 04:38:42,328 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 04:38:42,328 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 04:38:42,328 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:38:42,329 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:38:42,329 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 04:38:42,329 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 04:38:42,330 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 04:38:42,505 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 04:38:42,505 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 04:38:42,528 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 04:38:42,528 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 04:38:42,533 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 04:38:42,534 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 04:38:42,534 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 04:38:42,534 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 04:38:42,534 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 04:38:42,535 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 04:38:42,535 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 206 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-01-07 04:38:42,544] [main] java.version = 11.0.16 [testng] 04:38:42,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:38:42,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:38:42,589 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-07_04-38-42.log] [testng] 04:38:42,590 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2025-01-07 04:38:42,592] [main] testng.directory = /data [testng] [2025-01-07 04:38:42,592] [main] testng.configDirectory = /config [testng] [2025-01-07 04:38:42,602] [main] testng.multiplier = 1.0 [testng] [2025-01-07 04:38:42,603] [main] testng.in-memory = false [testng] [2025-01-07 04:38:42,603] [main] testng.allow-missing = false [testng] [2025-01-07 04:38:42,603] [main] user.language = en [testng] [2025-01-07 04:38:42,603] [main] user.country = ${user.country} [testng] [2025-01-07 04:38:42,603] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-01-07 04:38:49,855] [main] ---------------------------------------- [testng] [2025-01-07 04:38:49,855] [main] Total files: 22 [testng] [2025-01-07 04:38:49,855] [main] Scan time: 7.252 s (329 ms/file) [testng] [2025-01-07 04:38:49,855] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-01-07 04:39:09,088] [pool-1-thread-1] Initializing /data/converted/clown.tif: [testng] 04:39:09,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 04:39:09,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:39:09,090 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-01-07_04-39-09.log] [testng] 04:39:09,091 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21e6eb59 - End of configuration. [testng] [2025-01-07 04:39:09,642] [pool-1-thread-12] Initializing /data/converted/clown.ipw: [testng] 04:39:09,642 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 04:39:09,642 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:39:09,648 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-01-07_04-39-09.log] [testng] 04:39:09,648 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48e63500 - End of configuration. [testng] [2025-01-07 04:39:10,384] [pool-1-thread-11] Initializing /data/converted/dub01.seq: [testng] 04:39:10,384 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 04:39:10,384 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:39:10,385 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-01-07_04-39-10.log] [testng] 04:39:10,385 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b03d555 - End of configuration. [testng] [2025-01-07 04:39:10,867] [pool-1-thread-10] Initializing /data/converted/clown8c.seq: [testng] 04:39:10,867 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 04:39:10,867 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:39:10,867 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-01-07_04-39-10.log] [testng] 04:39:10,868 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16826ae7 - End of configuration. [testng] [2025-01-07 04:39:11,305] [pool-1-thread-9] Initializing /data/converted/clown8c.ipw: [testng] 04:39:11,306 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 04:39:11,306 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:39:11,307 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-01-07_04-39-11.log] [testng] 04:39:11,307 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44d9bed3 - End of configuration. [testng] [2025-01-07 04:39:11,728] [pool-1-thread-8] Initializing /data/converted/NESb_C2_TP7.ipw: [testng] 04:39:11,729 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 04:39:11,729 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:39:11,729 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-01-07_04-39-11.log] [testng] 04:39:11,729 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d70a299 - End of configuration. [testng] [2025-01-07 04:39:12,200] [pool-1-thread-7] Initializing /data/converted/mitosis-test.tif: [testng] 04:39:12,200 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 04:39:12,200 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:39:12,201 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-01-07_04-39-12.log] [testng] 04:39:12,201 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7da0858c - End of configuration. [testng] [2025-01-07 04:39:13,334] [pool-1-thread-6] Initializing /data/xiuwen/head2.seq: [testng] 04:39:13,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 04:39:13,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:39:13,335 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-01-07_04-39-13.log] [testng] 04:39:13,336 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6fdb0be0 - End of configuration. [testng] [2025-01-07 04:39:13,856] [pool-1-thread-5] Initializing /data/samples/PROBE.TIF: [testng] 04:39:13,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 04:39:13,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:39:13,857 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-01-07_04-39-13.log] [testng] 04:39:13,857 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78e15646 - End of configuration. [testng] [2025-01-07 04:39:14,355] [pool-1-thread-4] Initializing /data/converted/dub01.pic: [testng] 04:39:14,355 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 04:39:14,355 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:39:14,356 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-01-07_04-39-14.log] [testng] 04:39:14,356 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77af5c53 - End of configuration. [testng] [2025-01-07 04:39:14,817] [pool-1-thread-3] Initializing /data/samples/FLDUAL.TIF: [testng] 04:39:14,817 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 04:39:14,817 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:39:14,818 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-01-07_04-39-14.log] [testng] 04:39:14,818 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1919ec54 - End of configuration. [testng] [2025-01-07 04:39:15,905] [pool-1-thread-2] Initializing /data/converted/mitosis-test.seq: [testng] 04:39:15,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 04:39:15,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:39:15,906 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-01-07_04-39-15.log] [testng] 04:39:15,906 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64bb41cf - End of configuration. [testng] [2025-01-07 04:39:24,001] [pool-1-thread-4] Initializing /data/alex/AFAset0003.ips: [testng] [2025-01-07 04:39:24,413] [pool-1-thread-9] Initializing /data/converted/NESb_C2_TP7.seq: [testng] [2025-01-07 04:39:24,900] [pool-1-thread-1] Initializing /data/samples/TISSUE.TIF: [testng] [2025-01-07 04:39:25,950] [pool-1-thread-12] Initializing /data/converted/dub01.ipw: [testng] [2025-01-07 04:39:26,367] [pool-1-thread-10] Initializing /data/converted/NESb_C2_TP7.tiff: [testng] [2025-01-07 04:39:27,447] [pool-1-thread-2] Initializing /data/converted/mitosis-test.ipw: [testng] [2025-01-07 04:39:27,880] [pool-1-thread-5] Initializing /data/converted/clown8c.tif: [testng] [2025-01-07 04:39:28,942] [pool-1-thread-11] Initializing /data/converted/clown.seq: [testng] [2025-01-07 04:39:29,384] [pool-1-thread-8] Initializing /data/samples/HEART.SEQ: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 3 minutes 31 seconds Finished: SUCCESS