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Started by upstream project "BIOFORMATS-test-repo" build number 393 originally caused by: Started by upstream project "Trigger" build number 418 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins3095880412993705286.sh + '[' psd = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_62107_merge_ci -v /uod/idr/repos/curated/psd:/data -v /uod/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 14:11:50,622 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 14:11:50,651 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 14:11:50,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 14:11:50,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 14:11:50,689 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 14:11:50,690 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 14:11:50,690 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 14:11:50,690 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 14:11:50,690 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7e0b85f9 - End of configuration. [testng] 14:11:50,691 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6a28ffa4 - Registering current configuration as safe fallback point [testng] 14:11:50,691 |-INFO in ch.qos.logback.classic.util.ContextInitializer@48ae9b55 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 422 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-28 14:11:50,701] [main] java.version = 1.8.0_342 [testng] 14:11:50,705 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 14:11:50,705 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:11:50,916 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-28_14-11-50.log] [testng] 14:11:50,918 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-03-28 14:11:50,920] [main] testng.directory = /data [testng] [2025-03-28 14:11:50,920] [main] testng.configDirectory = /config [testng] [2025-03-28 14:11:50,951] [main] testng.multiplier = 1.0 [testng] [2025-03-28 14:11:50,951] [main] testng.in-memory = false [testng] [2025-03-28 14:11:50,952] [main] testng.allow-missing = false [testng] [2025-03-28 14:11:50,952] [main] user.language = en [testng] [2025-03-28 14:11:50,952] [main] user.country = ${user.country} [testng] [2025-03-28 14:11:50,952] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-03-28 14:11:56,144] [main] ---------------------------------------- [testng] [2025-03-28 14:11:56,144] [main] Total files: 18 [testng] [2025-03-28 14:11:56,144] [main] Scan time: 5.192 s (288 ms/file) [testng] [2025-03-28 14:11:56,144] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-28 14:16:05,683] [pool-1-thread-1] Initializing /data/ascb/thin&thick fill.2.psd: [testng] 14:16:05,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 14:16:05,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:16:05,684 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-28_14-16-05.log] [testng] 14:16:05,684 |-INFO in ch.qos.logback.core.sift.SiftProcessor@bd20bd6 - End of configuration. [testng] [2025-03-28 14:16:19,912] [pool-1-thread-12] Initializing /data/jcb/Fig5A_sicont6h.tif: [testng] 14:16:19,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 14:16:19,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:16:19,914 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-28_14-16-19.log] [testng] 14:16:19,914 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e5eb750 - End of configuration. [testng] [2025-03-28 14:16:35,312] [pool-1-thread-11] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd: [testng] 14:16:35,312 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 14:16:35,312 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:16:35,313 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-28_14-16-35.log] [testng] 14:16:35,313 |-INFO in ch.qos.logback.core.sift.SiftProcessor@513e7f31 - End of configuration. [testng] [2025-03-28 14:16:45,762] [pool-1-thread-10] Initializing /data/qa-4117/caspase gel-1.psd: [testng] 14:16:45,762 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 14:16:45,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:16:45,763 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-28_14-16-45.log] [testng] 14:16:45,764 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d09d6e1 - End of configuration. [testng] [2025-03-28 14:16:52,336] [pool-1-thread-9] Initializing /data/simon/colour_separated_image.psd: [testng] 14:16:52,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 14:16:52,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:16:52,337 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-28_14-16-52.log] [testng] 14:16:52,337 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a5074e4 - End of configuration. [testng] [2025-03-28 14:17:02,372] [pool-1-thread-8] Initializing /data/misc/vig_drawing_1.psd: [testng] 14:17:02,372 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 14:17:02,372 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:17:02,373 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-28_14-17-02.log] [testng] 14:17:02,373 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13cce8b0 - End of configuration. [testng] [2025-03-28 14:17:13,189] [pool-1-thread-7] Initializing /data/jcb/Fig5A_sip1506h.tif: [testng] 14:17:13,189 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 14:17:13,189 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:17:13,189 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-28_14-17-13.log] [testng] 14:17:13,190 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a4ce1a - End of configuration. [testng] [2025-03-28 14:17:24,654] [pool-1-thread-6] Initializing /data/misc/venus_composite_8bit.psd: [testng] 14:17:24,655 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 14:17:24,655 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:17:24,655 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-28_14-17-24.log] [testng] 14:17:24,656 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7363c82b - End of configuration. [testng] [2025-03-28 14:17:35,145] [pool-1-thread-5] Initializing /data/big-images/8kx8k.psd: [testng] 14:17:35,145 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 14:17:35,145 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:17:35,146 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-28_14-17-35.log] [testng] 14:17:35,146 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4973cca5 - End of configuration. [testng] [2025-03-28 14:17:45,987] [pool-1-thread-4] Initializing /data/misc/glossy_orbs.psd: [testng] 14:17:45,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 14:17:45,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:17:45,988 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-28_14-17-45.log] [testng] 14:17:45,988 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42e0b016 - End of configuration. [testng] [2025-03-28 14:17:56,411] [pool-1-thread-3] Initializing /data/ascb/423.psd: [testng] 14:17:56,411 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 14:17:56,412 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:17:56,412 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-28_14-17-56.log] [testng] 14:17:56,412 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21ca8d1d - End of configuration. [testng] [2025-03-28 14:18:10,228] [pool-1-thread-2] Initializing /data/misc/smilie.psd: [testng] 14:18:10,228 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 14:18:10,228 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:18:10,229 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-28_14-18-10.log] [testng] 14:18:10,230 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33f8697d - End of configuration. [testng] [2025-03-28 14:19:44,716] [pool-1-thread-4] Initializing /data/cris/house.tif: [testng] [2025-03-28 14:20:25,373] [pool-1-thread-6] Initializing /data/misc/venus_composite.psd: [testng] [2025-03-28 14:20:41,248] [pool-1-thread-9] Initializing /data/qa-7632/23283078__NA_NA_27343.psd: [testng] [2025-03-28 14:20:58,470] [pool-1-thread-11] Initializing /data/misc/glossy_buttons.psd: [testng] [2025-03-28 14:21:14,568] [pool-1-thread-2] Initializing /data/jcb/Fig5A_siHP16h.tif: [testng] [2025-03-28 14:21:30,397] [pool-1-thread-8] Initializing /data/ascb/607x.psd: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 12 minutes 54 seconds Finished: SUCCESS