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Started by upstream project "BIOFORMATS-test-repo" build number 393 originally caused by: Started by upstream project "Trigger" build number 418 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins10019344789864358254.sh + '[' nikon-jp2 = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_62120_merge_ci -v /uod/idr/repos/curated/nikon-jp2:/data -v /uod/idr-scratch/merge-ci/curated/nikon-jp2:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 23:20:00,555 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 23:20:00,557 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 23:20:00,557 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 23:20:00,558 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 23:20:00,558 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 23:20:00,558 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 23:20:00,559 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 23:20:00,559 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 23:20:00,559 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 23:20:00,559 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 23:20:00,559 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 23:20:00,559 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 23:20:00,869 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 23:20:00,869 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 23:20:00,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 23:20:00,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 23:20:00,904 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 23:20:00,904 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 23:20:00,905 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 23:20:00,905 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 23:20:00,905 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 23:20:00,906 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 23:20:00,906 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 347 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-28 23:20:00,916] [main] java.version = 1.8.0_342 [testng] 23:20:00,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 23:20:00,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 23:20:01,211 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-28_23-20-00.log] [testng] 23:20:01,213 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-03-28 23:20:01,215] [main] testng.directory = /data [testng] [2025-03-28 23:20:01,215] [main] testng.configDirectory = /config [testng] [2025-03-28 23:20:01,325] [main] testng.multiplier = 1.0 [testng] [2025-03-28 23:20:01,325] [main] testng.in-memory = false [testng] [2025-03-28 23:20:01,326] [main] testng.allow-missing = false [testng] [2025-03-28 23:20:01,326] [main] user.language = en [testng] [2025-03-28 23:20:01,326] [main] user.country = ${user.country} [testng] [2025-03-28 23:20:01,326] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-03-28 23:22:16,008] [main] ---------------------------------------- [testng] [2025-03-28 23:22:16,009] [main] Total files: 11 [testng] [2025-03-28 23:22:16,009] [main] Scan time: 134.682 s (12243 ms/file) [testng] [2025-03-28 23:22:16,009] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 11 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-28 23:35:52,512] [pool-1-thread-1] Initializing /data/kira/DapiFitcTexRed001.jp2: [testng] 23:35:52,512 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 23:35:52,512 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 23:35:52,513 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-28_23-35-52.log] [testng] 23:35:52,514 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e27b5a0 - End of configuration. [testng] [2025-03-28 23:36:30,879] [pool-1-thread-11] Initializing /data/kira/DapiFitcTexRed008G.tif: [testng] 23:36:30,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 23:36:30,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 23:36:30,882 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-28_23-36-30.log] [testng] 23:36:30,882 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40af1ec2 - End of configuration. [testng] [2025-03-28 23:37:50,111] [pool-1-thread-10] Initializing /data/kira/DapiFitcTexRed007.gif: [testng] 23:37:50,111 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 23:37:50,111 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 23:37:50,112 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-28_23-37-50.log] [testng] 23:37:50,113 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35e43a93 - End of configuration. [testng] [2025-03-28 23:37:56,896] [pool-1-thread-9] Initializing /data/kira/DapiFitcTexRed006.png: [testng] 23:37:56,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 23:37:56,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 23:37:56,897 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-28_23-37-56.log] [testng] 23:37:56,897 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f9ae7b4 - End of configuration. [testng] [2025-03-28 23:38:00,866] [pool-1-thread-8] Initializing /data/kira/DapiFitcTexRed003.jpg: [testng] 23:38:00,866 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 23:38:00,866 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 23:38:00,867 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-28_23-38-00.log] [testng] 23:38:00,867 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1df7ab44 - End of configuration. [testng] [2025-03-28 23:38:11,515] [pool-1-thread-7] Initializing /data/kira/DapiFitcTexRed005.bmp: [testng] 23:38:11,515 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 23:38:11,515 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 23:38:11,516 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-28_23-38-11.log] [testng] 23:38:11,517 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16c4db2d - End of configuration. [testng] [2025-03-28 23:38:17,266] [pool-1-thread-6] Initializing /data/kira/DapiFitcTexRed008BGR.tif: [testng] 23:38:17,266 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 23:38:17,266 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 23:38:17,267 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-28_23-38-17.log] [testng] 23:38:17,267 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5df883d5 - End of configuration. [testng] [2025-03-28 23:40:05,944] [pool-1-thread-5] Initializing /data/kira/DapiFitcTexRed008B.tif: [testng] 23:40:05,944 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 23:40:05,944 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 23:40:05,945 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-28_23-40-05.log] [testng] 23:40:05,945 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d1758e8 - End of configuration. [testng] [2025-03-28 23:42:02,827] [pool-1-thread-4] Initializing /data/kira/DapiFitcTexRed008.jp2: [testng] 23:42:02,828 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 23:42:02,828 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 23:42:02,828 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-28_23-42-02.log] [testng] 23:42:02,829 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ba30a7a - End of configuration. [testng] [2025-03-28 23:43:08,919] [pool-1-thread-3] Initializing /data/kira/DapiFitcTexRed004.tif: [testng] 23:43:08,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 23:43:08,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 23:43:08,920 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-28_23-43-08.log] [testng] 23:43:08,920 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ef3bf26 - End of configuration. [testng] [2025-03-28 23:45:17,113] [pool-1-thread-2] Initializing /data/kira/DapiFitcTexRed008R.tif: [testng] 23:45:17,113 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 23:45:17,113 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 23:45:17,114 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-28_23-45-17.log] [testng] 23:45:17,114 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7fd9365e - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 583, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 33 minutes 32 seconds Finished: SUCCESS