11:27:46Started by upstream project "Trigger" build number 12211:27:46originally caused by:
11:27:46 Started by user devspace11:27:46Running as SYSTEM
11:27:46Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push
11:27:46The recommended git tool is: NONE
11:27:46No credentials specified
11:27:46 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10
11:27:46Fetching changes from the remote Git repository
11:27:46 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10
11:27:46Fetching upstream changes from https://github.com/ome/openmicroscopy.git11:27:46 > git --version # timeout=10
11:27:46 > git --version # 'git version 2.39.3'
11:27:46 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
11:27:48 > git rev-parse origin/develop^{commit} # timeout=10
11:27:48Checking out Revision 88d0ec941afcac9a3f245341c2a9ed7cf3fe6cfc (origin/develop)
11:27:48 > git config core.sparsecheckout # timeout=10
11:27:48 > git checkout -f 88d0ec941afcac9a3f245341c2a9ed7cf3fe6cfc # timeout=30
11:27:50Commit message: "Merge pull request #6391 from will-moore/json_api_python_csrf_fix"
11:27:50 > git rev-list --no-walk 88d0ec941afcac9a3f245341c2a9ed7cf3fe6cfc # timeout=10
11:27:50Cleaning workspace
11:27:50 > git rev-parse --verify HEAD # timeout=10
11:27:50Resetting working tree
11:27:50 > git reset --hard # timeout=10
11:27:50 > git clean -fdx # timeout=10
11:27:50Copied 1 artifact from "OMERO-python-superbuild-build" build number 10711:27:50[OMERO-push] $ /bin/bash -xe /tmp/jenkins10054571399076122127.sh
11:27:50+ python3 -mvenv venv
11:27:52+ source /home/omero/workspace/OMERO-push/venv/bin/activate
11:27:52++ deactivate nondestructive
11:27:52++ '[' -n '' ']'
11:27:52++ '[' -n '' ']'
11:27:52++ '[' -n /bin/bash -o -n '' ']'
11:27:52++ hash -r
11:27:52++ '[' -n '' ']'
11:27:52++ unset VIRTUAL_ENV
11:27:52++ '[' '!' nondestructive = nondestructive ']'
11:27:52++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv
11:27:52++ export VIRTUAL_ENV
11:27:52++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
11:27:52++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
11:27:52++ export PATH
11:27:52++ '[' -n '' ']'
11:27:52++ '[' -z '' ']'
11:27:52++ _OLD_VIRTUAL_PS1=
11:27:52++ PS1='(venv) '
11:27:52++ export PS1
11:27:52++ '[' -n /bin/bash -o -n '' ']'
11:27:52++ hash -r
11:27:52+ pip install -U pip
11:27:56Requirement already satisfied: pip in ./venv/lib/python3.9/site-packages (24.1.1)
11:27:56+ pip install -U scc
11:27:57Requirement already satisfied: scc in ./venv/lib/python3.9/site-packages (0.19.1)
11:27:57Requirement already satisfied: PyGithub>=1.54 in ./venv/lib/python3.9/site-packages (from scc) (2.2.0)
11:27:57Requirement already satisfied: PyYAML>=5.1 in ./venv/lib/python3.9/site-packages (from scc) (6.0.1)
11:27:57Requirement already satisfied: future in ./venv/lib/python3.9/site-packages (from scc) (1.0.0)
11:27:57Requirement already satisfied: ruamel.yaml in ./venv/lib/python3.9/site-packages (from scc) (0.18.6)
11:27:57Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib/python3.9/site-packages (from scc) (0.2.7)
11:27:57Requirement already satisfied: six in ./venv/lib/python3.9/site-packages (from scc) (1.16.0)
11:27:57Requirement already satisfied: urllib3<2 in ./venv/lib/python3.9/site-packages (from scc) (1.26.18)
11:27:57Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib/python3.9/site-packages (from scc) (0.2.0)
11:27:57Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (1.5.0)
11:27:57Requirement already satisfied: requests>=2.14.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (2.31.0)
11:27:57Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib/python3.9/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.8.0)
11:27:57Requirement already satisfied: typing-extensions>=4.0.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (4.10.0)
11:27:57Requirement already satisfied: Deprecated in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (1.2.14)
11:27:57Requirement already satisfied: ruamel.yaml.clib>=0.2.7 in ./venv/lib/python3.9/site-packages (from ruamel.yaml->scc) (0.2.8)
11:27:57Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib/python3.9/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (42.0.5)
11:27:57Requirement already satisfied: cffi>=1.4.1 in ./venv/lib/python3.9/site-packages (from pynacl>=1.4.0->PyGithub>=1.54->scc) (1.16.0)
11:27:57Requirement already satisfied: charset-normalizer<4,>=2 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.3.2)
11:27:57Requirement already satisfied: idna<4,>=2.5 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.6)
11:27:57Requirement already satisfied: certifi>=2017.4.17 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2024.2.2)
11:27:57Requirement already satisfied: wrapt<2,>=1.10 in ./venv/lib/python3.9/site-packages (from Deprecated->PyGithub>=1.54->scc) (1.16.0)
11:27:57Requirement already satisfied: pycparser in ./venv/lib/python3.9/site-packages (from cffi>=1.4.1->pynacl>=1.4.0->PyGithub>=1.54->scc) (2.21)
11:27:57+ test -e src
11:27:57+ cd src
11:27:57++ git config github.user
11:27:57+ user=snoopycrimecop
11:27:57+ scc merge develop --no-ask --reset --shallow -S success-only
11:28:042024-07-02 11:28:04,451 [ scc.merge] INFO Merging Pull Request(s) based on develop
11:28:042024-07-02 11:28:04,452 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
11:28:042024-07-02 11:28:04,452 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
11:28:042024-07-02 11:28:04,452 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
11:28:042024-07-02 11:28:04,452 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
11:28:042024-07-02 11:28:04,452 [ scc.merge] INFO Excluding Pull Request(s) without successful status
11:28:352024-07-02 11:28:35,501 [ scc.merge] INFO Repository: ome/openmicroscopy
11:28:352024-07-02 11:28:35,501 [ scc.merge] INFO Excluded PRs:
11:28:352024-07-02 11:28:35,501 [ scc.merge] INFO - PR 6379 jburel 'TMP: build david's s3 Zarr branch' (exclude comment)
11:28:352024-07-02 11:28:35,501 [ scc.merge] INFO - PR 6319 dominikl 'Add integration test for joining session' (exclude comment)
11:28:352024-07-02 11:28:35,501 [ scc.merge] INFO - PR 6275 joshmoore 'Add OMERO5.4__1 for omero-model#71' (exclude comment)
11:28:352024-07-02 11:28:35,501 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment)
11:28:352024-07-02 11:28:35,501 [ scc.merge] INFO - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (label: exclude)
11:28:352024-07-02 11:28:35,501 [ scc.merge] INFO Already up to date.
11:28:352024-07-02 11:28:35,501 [ scc.merge] INFO
11:28:352024-07-02 11:28:35,501 [ scc.merge] INFO Merged PRs:
11:28:352024-07-02 11:28:35,501 [ scc.merge] INFO - PR 6309 jburel 'add try block'
11:28:352024-07-02 11:28:35,501 [ scc.merge] INFO - PR 6353 jburel 'remove dependencies'
11:28:352024-07-02 11:28:35,501 [ scc.merge] INFO - PR 6376 snoopycrimecop 'update dependencies'
11:28:352024-07-02 11:28:35,501 [ scc.merge] INFO - PR 6385 jburel 'remove test using deprecated method'
11:28:352024-07-02 11:28:35,501 [ scc.merge] INFO - PR 6388 sbesson 'Upgrade Ivy to 2.5.2'
11:28:352024-07-02 11:28:35,502 [ scc.merge] INFO - PR 6389 chris-allan 'Handle archive status being populated (See ome/omero-web#555)'
11:28:352024-07-02 11:28:35,502 [ scc.merge] INFO - PR 6393 sbesson 'Add documentation for the omero.logging properties'
11:28:352024-07-02 11:28:35,502 [ scc.merge] INFO
11:28:35+ cp etc/omero.properties etc/omero.properties.bak
11:28:35+ rm etc/omero.properties
11:28:35+ touch etc/omero.properties
11:28:35++ sed -n '/Internal dependencies/=' etc/omero.properties.bak
11:28:35+ ne=247
11:28:35++ sed -n 1,247p etc/omero.properties.bak
11:28:35+ line='##
11:28:35## omero.properties
11:28:35## ----------------
11:28:35##
11:28:35## DO NOT EDIT!
11:28:35##
11:28:35##
11:28:35## Any of these properties can be altered by using `omero config`. MODIFYING
11:28:35## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
11:28:35## at compile time!
11:28:35##
11:28:35## For an overview of these properties, see
11:28:35## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html11:28:35##
11:28:35## Properties marked with "DEVELOPMENT" should not be used in production.
11:28:3511:28:35# Comma separated list of Ice transports available to clients. The default
11:28:35# value ("ssl,tcp") instructs Ice to open the ports specified by the
11:28:35# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
11:28:35# will prevent all non-encrypted connections to the OMERO server.
11:28:35#
11:28:35# Additionally, there are two experimental values for using websockets:
11:28:35# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
11:28:35# that are opened are controlled by the omero.ports.ws and omero.ports.wss
11:28:35# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
11:28:35#
11:28:35# Note: When using websockets behind a web server like nginx, additional
11:28:35# configuration may be needed.
11:28:35omero.client.icetransports=ssl,tcp
11:28:3511:28:35# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
11:28:35# server
11:28:35omero.ports.prefix=
11:28:3511:28:35# The Glacier2 SSL port number to use
11:28:35omero.ports.ssl=4064
11:28:3511:28:35# The Glacier2 TCP port number to use (unencrypted)
11:28:35omero.ports.tcp=4063
11:28:3511:28:35# The Glacier2 WSS port number to use
11:28:35omero.ports.wss=4066
11:28:3511:28:35# The Glacier2 WS port number to use (unencrypted)
11:28:35omero.ports.ws=4065
11:28:3511:28:35# The IceGrid registry port number to use
11:28:35omero.ports.registry=4061
11:28:3511:28:35#############################################
11:28:35## JVM configuration
11:28:35##
11:28:35## Note: changes to the omero.jvmcfg properties
11:28:35## will *not* be reflected in OMERO.server
11:28:35## since they are defined in OMERO.py.
11:28:35#############################################
11:28:35## (For documentation only)
11:28:35# Memory strategy which will be used by default.
11:28:35# Options include: percent, manual
11:28:35omero.jvmcfg.strategy=percent
11:28:3511:28:35## (For documentation only)
11:28:35# Explicit value for the `-Xmx` argument, e.g.
11:28:35# "1g"
11:28:35omero.jvmcfg.heap_size=
11:28:3511:28:35## (For documentation only)
11:28:35# Explicit value for the MaxPermSize argument
11:28:35# to the JVM, e.g. "500M". Ignored for Java8+
11:28:35omero.jvmcfg.perm_gen=
11:28:3511:28:35## (For documentation only)
11:28:35# Toggles on or off heap dumps on OOMs. Default is "off".
11:28:35# The special value "tmp" will create the heap dumps in
11:28:35# your temp directory.
11:28:35omero.jvmcfg.heap_dump=
11:28:3511:28:35## (For documentation only)
11:28:35# Used only by the percent strategy. An integer between 0
11:28:35# and 100 which is the percent of active memory that will
11:28:35# be used by the service.
11:28:35omero.jvmcfg.percent=
11:28:3511:28:35## (For documentation only)
11:28:35# Contains other parameters which should be passed to the
11:28:35# JVM. The value of "append" is treated as if it were on
11:28:35# the command line so will be separated on whitespace.
11:28:35# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
11:28:35# results in two new arguments.
11:28:35# Note that when using `config set` from the command line
11:28:35# one may need to give a prior `--` option to prevent a value
11:28:35# starting with `-` from already being parsed as an option,
11:28:35# and values may need quoting to prevent whitespace or other
11:28:35# significant characters from being interpreted prematurely.
11:28:3511:28:35omero.jvmcfg.append=
11:28:3511:28:35## (For documentation only)
11:28:35# Manual override of the total system memory that
11:28:35# OMERO will *think* is present on the local OS (MB).
11:28:35# If unset, an attempt will be made to detect the actual
11:28:35# amount: first by using the Python library `psutil` and
11:28:35# if that is not installed, by running a Java tool. If
11:28:35# neither works, 4.0GB is assumed.
11:28:35omero.jvmcfg.system_memory=
11:28:3511:28:35## (For documentation only)
11:28:35# Suggestion for strategies as to the minimum memory
11:28:35# that they will use for calculating JVM settings (MB).
11:28:35omero.jvmcfg.min_system_memory=3414
11:28:3511:28:35## (For documentation only)
11:28:35# Suggestion for strategies as to the maximum memory
11:28:35# that they will use for calculating JVM settings (MB).
11:28:35omero.jvmcfg.max_system_memory=48000
11:28:3511:28:3511:28:35#############################################
11:28:35## Logging properties
11:28:35##
11:28:35## Note: changes to the default omero.logging values in
11:28:35## this file will *not* be reflected in OMERO.server
11:28:35## since they are defined in OMERO.py
11:28:35#############################################
11:28:3511:28:35## (For documentation only)
11:28:35# Relative server directory where the log files should be stored.
11:28:35omero.logging.directory=var/log/
11:28:3511:28:35## (For documentation only)
11:28:35# Whether the server log files should be rotated at a certain time
11:28:35# interval. If true, log files will be rolled over at midnight.
11:28:35# Otherwise, log files will be rolled over at a predetermined size,
11:28:35# see omero.logging.logsize for more information.
11:28:35omero.logging.timedlog=false
11:28:3511:28:35## (For documentation only)
11:28:35# If omero.logging.timedlog is false or unset, specifies the
11:28:35# maximum size of the server log files in bytes above which a
11:28:35# new log file should be created.
11:28:35omero.logging.logsize=5000000
11:28:3511:28:35## (For documentation only)
11:28:35# If omero.logging.timedlog is false or unset, specifies the
11:28:35# number of old server log files that should be kept. Old log
11:28:35# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
11:28:35omero.logging.lognum=9
11:28:3511:28:35## (For documentation only)
11:28:35# Specifies the threshold for the Python servers log files. Logging messages
11:28:35# which are less severe than this value will be ignored. For a list of
11:28:35# available values, see https://docs.python.org/3/library/logging.html#levels.
11:28:35omero.logging.level=20
11:28:3511:28:35#############################################
11:28:35## Ice overrides
11:28:35##
11:28:35## Though not used directly by OMERO, a number
11:28:35## of properties prefixed with "Ice.*" will
11:28:35## alter the behavior of the OMERO runtime
11:28:35## by configuring the Ice communicators. For a
11:28:35## full listing see:
11:28:35##
11:28:35## http://doc.zeroc.com/display/Ice/Property+Reference11:28:35## For more information see
11:28:35## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start11:28:35#############################################
11:28:3511:28:35# Disable IPv6 by setting to 0. Only needed in
11:28:35# certain situations.
11:28:35Ice.IPv6=1
11:28:3511:28:35# Glacier2Template IceSSL defaults and overrides,
11:28:35# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
11:28:35# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
11:28:35# update the corresponding IceSSL. property.
11:28:35omero.glacier2.IceSSL=
11:28:3511:28:35# Glacier2Template SSL maximum allowed protocol (mac bug)
11:28:35omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
11:28:35# Glacier2Template SSL allowed cipher suites
11:28:35omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
11:28:35# Glacier2Template SSL verification requirements
11:28:35omero.glacier2.IceSSL.VerifyPeer=0
11:28:35# Glacier2Template SSL allowed protocols
11:28:35omero.glacier2.IceSSL.Protocols=tls1
11:28:3511:28:35# Override the default set of OMERO services.
11:28:35# For example, to run OMERO.server with Blitz and Tables only
11:28:35# (i.e. disable Processor, DropBox, Indexer, PixelData)
11:28:35# set this to ``master:Blitz-0,Tables-0``.
11:28:35# Also use this to distribute OMERO services across multiple nodes,
11:28:35# for example:
11:28:35# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
11:28:35# See
11:28:35# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples11:28:35omero.server.nodedescriptors=
11:28:3511:28:35#############################################
11:28:35## Darwin (OS X) specific defaults for templated configuration files only.
11:28:35## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
11:28:35## file.
11:28:35## Do not set these properties in ``omero config``, instead set the original
11:28:35## ``xxx.yyy`` property
11:28:35#############################################
11:28:35_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
11:28:3511:28:3511:28:3511:28:35#############################################
11:28:35## Server product name for release artifacts
11:28:35#############################################
11:28:35product.name=OMERO.server
11:28:3511:28:35#############################################
11:28:35### Properties below this marker are ignored by
11:28:35### omero.install.config_parser.PropertyParser
11:28:35### END
11:28:3511:28:35#############################################
11:28:35## Library versions
11:28:35#############################################
11:28:35##
11:28:35versions.findbugs=1.2.1
11:28:35versions.ice36=3.6.5
11:28:35versions.ice36_lib=36
11:28:35## internal
11:28:35versions.omeroshares36=3.6.3
11:28:35versions.omeromock36=3.6.3
11:28:35versions.icedb36=3.6.3
11:28:35versions.ipython=1.2.1
11:28:3511:28:35versions.janino=2.5.10
11:28:3511:28:35versions.reportng=1.1.1
11:28:3511:28:35versions.testng=7.5
11:28:35versions.velocity=1.4
11:28:3511:28:35versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE11:28:35versions.omero-scripts-url=${versions.omero-pypi}
11:28:3511:28:35###
11:28:35### Appended Values
11:28:35###
11:28:3511:28:35## Internal dependencies'
11:28:35+ echo '##
11:28:35## omero.properties
11:28:35## ----------------
11:28:35##
11:28:35## DO NOT EDIT!
11:28:35##
11:28:35##
11:28:35## Any of these properties can be altered by using `omero config`. MODIFYING
11:28:35## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
11:28:35## at compile time!
11:28:35##
11:28:35## For an overview of these properties, see
11:28:35## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html11:28:35##
11:28:35## Properties marked with "DEVELOPMENT" should not be used in production.
11:28:3511:28:35# Comma separated list of Ice transports available to clients. The default
11:28:35# value ("ssl,tcp") instructs Ice to open the ports specified by the
11:28:35# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
11:28:35# will prevent all non-encrypted connections to the OMERO server.
11:28:35#
11:28:35# Additionally, there are two experimental values for using websockets:
11:28:35# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
11:28:35# that are opened are controlled by the omero.ports.ws and omero.ports.wss
11:28:35# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
11:28:35#
11:28:35# Note: When using websockets behind a web server like nginx, additional
11:28:35# configuration may be needed.
11:28:35omero.client.icetransports=ssl,tcp
11:28:3511:28:35# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
11:28:35# server
11:28:35omero.ports.prefix=
11:28:3511:28:35# The Glacier2 SSL port number to use
11:28:35omero.ports.ssl=4064
11:28:3511:28:35# The Glacier2 TCP port number to use (unencrypted)
11:28:35omero.ports.tcp=4063
11:28:3511:28:35# The Glacier2 WSS port number to use
11:28:35omero.ports.wss=4066
11:28:3511:28:35# The Glacier2 WS port number to use (unencrypted)
11:28:35omero.ports.ws=4065
11:28:3511:28:35# The IceGrid registry port number to use
11:28:35omero.ports.registry=4061
11:28:3511:28:35#############################################
11:28:35## JVM configuration
11:28:35##
11:28:35## Note: changes to the omero.jvmcfg properties
11:28:35## will *not* be reflected in OMERO.server
11:28:35## since they are defined in OMERO.py.
11:28:35#############################################
11:28:35## (For documentation only)
11:28:35# Memory strategy which will be used by default.
11:28:35# Options include: percent, manual
11:28:35omero.jvmcfg.strategy=percent
11:28:3511:28:35## (For documentation only)
11:28:35# Explicit value for the `-Xmx` argument, e.g.
11:28:35# "1g"
11:28:35omero.jvmcfg.heap_size=
11:28:3511:28:35## (For documentation only)
11:28:35# Explicit value for the MaxPermSize argument
11:28:35# to the JVM, e.g. "500M". Ignored for Java8+
11:28:35omero.jvmcfg.perm_gen=
11:28:3511:28:35## (For documentation only)
11:28:35# Toggles on or off heap dumps on OOMs. Default is "off".
11:28:35# The special value "tmp" will create the heap dumps in
11:28:35# your temp directory.
11:28:35omero.jvmcfg.heap_dump=
11:28:3511:28:35## (For documentation only)
11:28:35# Used only by the percent strategy. An integer between 0
11:28:35# and 100 which is the percent of active memory that will
11:28:35# be used by the service.
11:28:35omero.jvmcfg.percent=
11:28:3511:28:35## (For documentation only)
11:28:35# Contains other parameters which should be passed to the
11:28:35# JVM. The value of "append" is treated as if it were on
11:28:35# the command line so will be separated on whitespace.
11:28:35# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
11:28:35# results in two new arguments.
11:28:35# Note that when using `config set` from the command line
11:28:35# one may need to give a prior `--` option to prevent a value
11:28:35# starting with `-` from already being parsed as an option,
11:28:35# and values may need quoting to prevent whitespace or other
11:28:35# significant characters from being interpreted prematurely.
11:28:3511:28:35omero.jvmcfg.append=
11:28:3511:28:35## (For documentation only)
11:28:35# Manual override of the total system memory that
11:28:35# OMERO will *think* is present on the local OS (MB).
11:28:35# If unset, an attempt will be made to detect the actual
11:28:35# amount: first by using the Python library `psutil` and
11:28:35# if that is not installed, by running a Java tool. If
11:28:35# neither works, 4.0GB is assumed.
11:28:35omero.jvmcfg.system_memory=
11:28:3511:28:35## (For documentation only)
11:28:35# Suggestion for strategies as to the minimum memory
11:28:35# that they will use for calculating JVM settings (MB).
11:28:35omero.jvmcfg.min_system_memory=3414
11:28:3511:28:35## (For documentation only)
11:28:35# Suggestion for strategies as to the maximum memory
11:28:35# that they will use for calculating JVM settings (MB).
11:28:35omero.jvmcfg.max_system_memory=48000
11:28:3511:28:3511:28:35#############################################
11:28:35## Logging properties
11:28:35##
11:28:35## Note: changes to the default omero.logging values in
11:28:35## this file will *not* be reflected in OMERO.server
11:28:35## since they are defined in OMERO.py
11:28:35#############################################
11:28:3511:28:35## (For documentation only)
11:28:35# Relative server directory where the log files should be stored.
11:28:35omero.logging.directory=var/log/
11:28:3511:28:35## (For documentation only)
11:28:35# Whether the server log files should be rotated at a certain time
11:28:35# interval. If true, log files will be rolled over at midnight.
11:28:35# Otherwise, log files will be rolled over at a predetermined size,
11:28:35# see omero.logging.logsize for more information.
11:28:35omero.logging.timedlog=false
11:28:3511:28:35## (For documentation only)
11:28:35# If omero.logging.timedlog is false or unset, specifies the
11:28:35# maximum size of the server log files in bytes above which a
11:28:35# new log file should be created.
11:28:35omero.logging.logsize=5000000
11:28:3511:28:35## (For documentation only)
11:28:35# If omero.logging.timedlog is false or unset, specifies the
11:28:35# number of old server log files that should be kept. Old log
11:28:35# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
11:28:35omero.logging.lognum=9
11:28:3511:28:35## (For documentation only)
11:28:35# Specifies the threshold for the Python servers log files. Logging messages
11:28:35# which are less severe than this value will be ignored. For a list of
11:28:35# available values, see https://docs.python.org/3/library/logging.html#levels.
11:28:35omero.logging.level=20
11:28:3511:28:35#############################################
11:28:35## Ice overrides
11:28:35##
11:28:35## Though not used directly by OMERO, a number
11:28:35## of properties prefixed with "Ice.*" will
11:28:35## alter the behavior of the OMERO runtime
11:28:35## by configuring the Ice communicators. For a
11:28:35## full listing see:
11:28:35##
11:28:35## http://doc.zeroc.com/display/Ice/Property+Reference11:28:35## For more information see
11:28:35## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start11:28:35#############################################
11:28:3511:28:35# Disable IPv6 by setting to 0. Only needed in
11:28:35# certain situations.
11:28:35Ice.IPv6=1
11:28:3511:28:35# Glacier2Template IceSSL defaults and overrides,
11:28:35# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
11:28:35# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
11:28:35# update the corresponding IceSSL. property.
11:28:35omero.glacier2.IceSSL=
11:28:3511:28:35# Glacier2Template SSL maximum allowed protocol (mac bug)
11:28:35omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
11:28:35# Glacier2Template SSL allowed cipher suites
11:28:35omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
11:28:35# Glacier2Template SSL verification requirements
11:28:35omero.glacier2.IceSSL.VerifyPeer=0
11:28:35# Glacier2Template SSL allowed protocols
11:28:35omero.glacier2.IceSSL.Protocols=tls1
11:28:3511:28:35# Override the default set of OMERO services.
11:28:35# For example, to run OMERO.server with Blitz and Tables only
11:28:35# (i.e. disable Processor, DropBox, Indexer, PixelData)
11:28:35# set this to ``master:Blitz-0,Tables-0``.
11:28:35# Also use this to distribute OMERO services across multiple nodes,
11:28:35# for example:
11:28:35# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
11:28:35# See
11:28:35# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples11:28:35omero.server.nodedescriptors=
11:28:3511:28:35#############################################
11:28:35## Darwin (OS X) specific defaults for templated configuration files only.
11:28:35## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
11:28:35## file.
11:28:35## Do not set these properties in ``omero config``, instead set the original
11:28:35## ``xxx.yyy`` property
11:28:35#############################################
11:28:35_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
11:28:3511:28:3511:28:3511:28:35#############################################
11:28:35## Server product name for release artifacts
11:28:35#############################################
11:28:35product.name=OMERO.server
11:28:3511:28:35#############################################
11:28:35### Properties below this marker are ignored by
11:28:35### omero.install.config_parser.PropertyParser
11:28:35### END
11:28:3511:28:35#############################################
11:28:35## Library versions
11:28:35#############################################
11:28:35##
11:28:35versions.findbugs=1.2.1
11:28:35versions.ice36=3.6.5
11:28:35versions.ice36_lib=36
11:28:35## internal
11:28:35versions.omeroshares36=3.6.3
11:28:35versions.omeromock36=3.6.3
11:28:35versions.icedb36=3.6.3
11:28:35versions.ipython=1.2.1
11:28:3511:28:35versions.janino=2.5.10
11:28:3511:28:35versions.reportng=1.1.1
11:28:3511:28:35versions.testng=7.5
11:28:35versions.velocity=1.4
11:28:3511:28:35versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE11:28:35versions.omero-scripts-url=${versions.omero-pypi}
11:28:3511:28:35###
11:28:35### Appended Values
11:28:35###
11:28:3511:28:35## Internal dependencies'
11:28:35+ echo versions.omero-pypi=https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/11:28:35+ echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive11:28:35+ echo versions.scripts-prefix=
11:28:35+ echo versions.scripts=merge_ci
11:28:35+ cat /home/omero/workspace/OMERO-push/version.properties
11:28:35+ git commit -a -m 'Add version.properties to etc/omero.properties'
11:28:35[detached HEAD e41a3b9be5] Add version.properties to etc/omero.properties
11:28:35 1 file changed, 47 insertions(+), 7 deletions(-)
11:28:35+ git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci
11:28:37To github.com:snoopycrimecop/openmicroscopy.git
11:28:37 + 99dd296a2f...e41a3b9be5 HEAD -> merge_ci (forced update)
11:28:37Finished: SUCCESS
![[Jenkins]](/jenkins/static/d0200910/images/svgs/logo.svg){kind=logo}
