01:02:32Started by upstream project "Trigger" build number 22101:02:32originally caused by:
01:02:32 Started by timer
01:02:32Running as SYSTEM
01:02:32Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push
01:02:32The recommended git tool is: NONE
01:02:32No credentials specified
01:02:32 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10
01:02:32Fetching changes from the remote Git repository
01:02:32 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10
01:02:32Fetching upstream changes from https://github.com/ome/openmicroscopy.git01:02:32 > git --version # timeout=10
01:02:32 > git --version # 'git version 2.43.5'
01:02:32 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
01:02:34 > git rev-parse origin/develop^{commit} # timeout=10
01:02:34Checking out Revision e9fe27633007773042c840e356c5ff37ec03f550 (origin/develop)
01:02:34 > git config core.sparsecheckout # timeout=10
01:02:34 > git checkout -f e9fe27633007773042c840e356c5ff37ec03f550 # timeout=30
01:02:35Commit message: "Merge pull request #6407 from will-moore/history_5.6.13"
01:02:35 > git rev-list --no-walk e9fe27633007773042c840e356c5ff37ec03f550 # timeout=10
01:02:35Cleaning workspace
01:02:35 > git rev-parse --verify HEAD # timeout=10
01:02:35Resetting working tree
01:02:35 > git reset --hard # timeout=10
01:02:35 > git clean -fdx # timeout=10
01:02:35Copied 1 artifact from "OMERO-python-superbuild-build" build number 18101:02:35[OMERO-push] $ /bin/bash -xe /tmp/jenkins4332979873213522547.sh
01:02:35+ python3 -mvenv venv
01:02:37+ source /home/omero/workspace/OMERO-push/venv/bin/activate
01:02:37++ deactivate nondestructive
01:02:37++ '[' -n '' ']'
01:02:37++ '[' -n '' ']'
01:02:37++ '[' -n /bin/bash -o -n '' ']'
01:02:37++ hash -r
01:02:37++ '[' -n '' ']'
01:02:37++ unset VIRTUAL_ENV
01:02:37++ '[' '!' nondestructive = nondestructive ']'
01:02:37++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv
01:02:37++ export VIRTUAL_ENV
01:02:37++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:02:37++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:02:37++ export PATH
01:02:37++ '[' -n '' ']'
01:02:37++ '[' -z '' ']'
01:02:37++ _OLD_VIRTUAL_PS1=
01:02:37++ PS1='(venv) '
01:02:37++ export PS1
01:02:37++ '[' -n /bin/bash -o -n '' ']'
01:02:37++ hash -r
01:02:37+ pip install -U pip
01:02:39Requirement already satisfied: pip in ./venv/lib/python3.9/site-packages (24.2)
01:02:39+ pip install -U scc
01:02:40Requirement already satisfied: scc in ./venv/lib/python3.9/site-packages (0.20.0)
01:02:40Requirement already satisfied: PyGithub>=1.54 in ./venv/lib/python3.9/site-packages (from scc) (2.2.0)
01:02:40Requirement already satisfied: PyYAML>=5.1 in ./venv/lib/python3.9/site-packages (from scc) (6.0.1)
01:02:40Requirement already satisfied: future in ./venv/lib/python3.9/site-packages (from scc) (1.0.0)
01:02:40Requirement already satisfied: ruamel.yaml in ./venv/lib/python3.9/site-packages (from scc) (0.18.6)
01:02:40Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib/python3.9/site-packages (from scc) (0.2.7)
01:02:40Requirement already satisfied: six in ./venv/lib/python3.9/site-packages (from scc) (1.16.0)
01:02:40Requirement already satisfied: urllib3<2 in ./venv/lib/python3.9/site-packages (from scc) (1.26.18)
01:02:40Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib/python3.9/site-packages (from scc) (0.2.0)
01:02:40Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (1.5.0)
01:02:40Requirement already satisfied: requests>=2.14.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (2.31.0)
01:02:40Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib/python3.9/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.8.0)
01:02:40Requirement already satisfied: typing-extensions>=4.0.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (4.10.0)
01:02:40Requirement already satisfied: Deprecated in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (1.2.14)
01:02:40Requirement already satisfied: ruamel.yaml.clib>=0.2.7 in ./venv/lib/python3.9/site-packages (from ruamel.yaml->scc) (0.2.8)
01:02:40Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib/python3.9/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (42.0.5)
01:02:40Requirement already satisfied: cffi>=1.4.1 in ./venv/lib/python3.9/site-packages (from pynacl>=1.4.0->PyGithub>=1.54->scc) (1.16.0)
01:02:40Requirement already satisfied: charset-normalizer<4,>=2 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.3.2)
01:02:40Requirement already satisfied: idna<4,>=2.5 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.6)
01:02:40Requirement already satisfied: certifi>=2017.4.17 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2024.2.2)
01:02:40Requirement already satisfied: wrapt<2,>=1.10 in ./venv/lib/python3.9/site-packages (from Deprecated->PyGithub>=1.54->scc) (1.16.0)
01:02:40Requirement already satisfied: pycparser in ./venv/lib/python3.9/site-packages (from cffi>=1.4.1->pynacl>=1.4.0->PyGithub>=1.54->scc) (2.21)
01:02:40+ test -e src
01:02:40+ cd src
01:02:40++ git config github.user
01:02:40+ user=snoopycrimecop
01:02:40+ scc merge develop --no-ask --reset --shallow -S success-only
01:02:452024-09-23 01:02:45,734 [ scc.merge] INFO Merging Pull Request(s) based on develop
01:02:452024-09-23 01:02:45,735 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
01:02:452024-09-23 01:02:45,735 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
01:02:452024-09-23 01:02:45,735 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
01:02:452024-09-23 01:02:45,735 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
01:02:452024-09-23 01:02:45,735 [ scc.merge] INFO Excluding Pull Request(s) without successful status
01:03:142024-09-23 01:03:14,927 [ scc.merge] INFO Repository: ome/openmicroscopy
01:03:142024-09-23 01:03:14,928 [ scc.merge] INFO Excluded PRs:
01:03:142024-09-23 01:03:14,928 [ scc.merge] INFO - PR 6398 Tom-TBT 'Perceptibly uniform luts' (user: Tom-TBT)
01:03:142024-09-23 01:03:14,928 [ scc.merge] INFO - PR 6319 dominikl 'Add integration test for joining session' (exclude comment)
01:03:142024-09-23 01:03:14,928 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment)
01:03:142024-09-23 01:03:14,928 [ scc.merge] INFO - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (label: exclude)
01:03:142024-09-23 01:03:14,928 [ scc.merge] INFO Already up to date.
01:03:142024-09-23 01:03:14,928 [ scc.merge] INFO
01:03:142024-09-23 01:03:14,928 [ scc.merge] INFO Merged PRs:
01:03:142024-09-23 01:03:14,928 [ scc.merge] INFO - PR 6309 jburel 'add try block'
01:03:142024-09-23 01:03:14,928 [ scc.merge] INFO - PR 6353 jburel 'remove dependencies'
01:03:142024-09-23 01:03:14,928 [ scc.merge] INFO - PR 6385 jburel 'remove test using deprecated method'
01:03:142024-09-23 01:03:14,928 [ scc.merge] INFO - PR 6409 sbesson 'Bump jul-to-slf4j and jcl-over-slf4j to version 2.0.16'
01:03:142024-09-23 01:03:14,928 [ scc.merge] INFO - PR 6410 snoopycrimecop 'update dependencies'
01:03:142024-09-23 01:03:14,928 [ scc.merge] INFO - PR 6411 knabar 'Check query without matches'
01:03:142024-09-23 01:03:14,928 [ scc.merge] INFO - PR 6412 sbesson 'Extend test coverage for tables slice, read and readCoordinates API'
01:03:142024-09-23 01:03:14,928 [ scc.merge] INFO
01:03:15+ cp etc/omero.properties etc/omero.properties.bak
01:03:15+ rm etc/omero.properties
01:03:15+ touch etc/omero.properties
01:03:15++ sed -n '/Internal dependencies/=' etc/omero.properties.bak
01:03:15+ ne=249
01:03:15++ sed -n 1,249p etc/omero.properties.bak
01:03:15+ line='##
01:03:15## omero.properties
01:03:15## ----------------
01:03:15##
01:03:15## DO NOT EDIT!
01:03:15##
01:03:15##
01:03:15## Any of these properties can be altered by using `omero config`. MODIFYING
01:03:15## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
01:03:15## at compile time!
01:03:15##
01:03:15## For an overview of these properties, see
01:03:15## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html01:03:15##
01:03:15## Properties marked with "DEVELOPMENT" should not be used in production.
01:03:1501:03:15# Comma separated list of Ice transports available to clients. The default
01:03:15# value ("ssl,tcp") instructs Ice to open the ports specified by the
01:03:15# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
01:03:15# will prevent all non-encrypted connections to the OMERO server.
01:03:15#
01:03:15# Additionally, there are two experimental values for using websockets:
01:03:15# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
01:03:15# that are opened are controlled by the omero.ports.ws and omero.ports.wss
01:03:15# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
01:03:15#
01:03:15# Note: When using websockets behind a web server like nginx, additional
01:03:15# configuration may be needed.
01:03:15omero.client.icetransports=ssl,tcp
01:03:1501:03:15# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
01:03:15# server
01:03:15omero.ports.prefix=
01:03:1501:03:15# The Glacier2 SSL port number to use
01:03:15omero.ports.ssl=4064
01:03:1501:03:15# The Glacier2 TCP port number to use (unencrypted)
01:03:15omero.ports.tcp=4063
01:03:1501:03:15# The Glacier2 WSS port number to use
01:03:15omero.ports.wss=4066
01:03:1501:03:15# The Glacier2 WS port number to use (unencrypted)
01:03:15omero.ports.ws=4065
01:03:1501:03:15# The IceGrid registry port number to use
01:03:15omero.ports.registry=4061
01:03:1501:03:15#############################################
01:03:15## JVM configuration
01:03:15##
01:03:15## Note: changes to the omero.jvmcfg properties
01:03:15## will *not* be reflected in OMERO.server
01:03:15## since they are defined in OMERO.py.
01:03:15#############################################
01:03:15## (For documentation only)
01:03:15# Memory strategy which will be used by default.
01:03:15# Options include: percent, manual
01:03:15omero.jvmcfg.strategy=percent
01:03:1501:03:15## (For documentation only)
01:03:15# Explicit value for the `-Xmx` argument, e.g.
01:03:15# "1g"
01:03:15omero.jvmcfg.heap_size=
01:03:1501:03:15## (For documentation only)
01:03:15# Explicit value for the MaxPermSize argument
01:03:15# to the JVM, e.g. "500M". Ignored for Java8+
01:03:15omero.jvmcfg.perm_gen=
01:03:1501:03:15## (For documentation only)
01:03:15# Toggles on or off heap dumps on OOMs. Default is "off".
01:03:15# The special value "tmp" will create the heap dumps in
01:03:15# your temp directory.
01:03:15omero.jvmcfg.heap_dump=
01:03:1501:03:15## (For documentation only)
01:03:15# Used only by the percent strategy. An integer between 0
01:03:15# and 100 which is the percent of active memory that will
01:03:15# be used by the service.
01:03:15omero.jvmcfg.percent=
01:03:1501:03:15## (For documentation only)
01:03:15# Contains other parameters which should be passed to the
01:03:15# JVM. The value of "append" is treated as if it were on
01:03:15# the command line so will be separated on whitespace.
01:03:15# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
01:03:15# results in two new arguments.
01:03:15# Note that when using `config set` from the command line
01:03:15# one may need to give a prior `--` option to prevent a value
01:03:15# starting with `-` from already being parsed as an option,
01:03:15# and values may need quoting to prevent whitespace or other
01:03:15# significant characters from being interpreted prematurely.
01:03:1501:03:15omero.jvmcfg.append=
01:03:1501:03:15## (For documentation only)
01:03:15# Manual override of the total system memory that
01:03:15# OMERO will *think* is present on the local OS (MB).
01:03:15# If unset, an attempt will be made to detect the actual
01:03:15# amount: first by using the Python library `psutil` and
01:03:15# if that is not installed, by running a Java tool. If
01:03:15# neither works, 4.0GB is assumed.
01:03:15omero.jvmcfg.system_memory=
01:03:1501:03:15## (For documentation only)
01:03:15# Suggestion for strategies as to the minimum memory
01:03:15# that they will use for calculating JVM settings (MB).
01:03:15omero.jvmcfg.min_system_memory=3414
01:03:1501:03:15## (For documentation only)
01:03:15# Suggestion for strategies as to the maximum memory
01:03:15# that they will use for calculating JVM settings (MB).
01:03:15omero.jvmcfg.max_system_memory=48000
01:03:1501:03:1501:03:15#############################################
01:03:15## Logging properties
01:03:15##
01:03:15## Note: changes to the default omero.logging values in
01:03:15## this file will *not* be reflected in OMERO.server
01:03:15## since they are defined in OMERO.py
01:03:15#############################################
01:03:1501:03:15## (For documentation only)
01:03:15# Relative server directory where the log files should be stored.
01:03:15omero.logging.directory=var/log/
01:03:1501:03:15## (For documentation only)
01:03:15# Whether the server log files should be rotated at a certain time
01:03:15# interval. If true, log files will be rolled over at midnight.
01:03:15# Otherwise, log files will be rolled over at a predetermined size,
01:03:15# see omero.logging.logsize for more information.
01:03:15omero.logging.timedlog=false
01:03:1501:03:15## (For documentation only)
01:03:15# If omero.logging.timedlog is false or unset, specifies the
01:03:15# maximum size of the server log files in bytes above which a
01:03:15# new log file should be created.
01:03:15omero.logging.logsize=5000000
01:03:1501:03:15## (For documentation only)
01:03:15# If omero.logging.timedlog is false or unset, specifies the
01:03:15# number of old server log files that should be kept. Old log
01:03:15# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
01:03:15omero.logging.lognum=9
01:03:1501:03:15## (For documentation only)
01:03:15# Specifies the threshold for the Python servers log files. Logging messages
01:03:15# which are less severe than this value will be ignored. For a list of
01:03:15# available values, see https://docs.python.org/3/library/logging.html#levels.
01:03:15omero.logging.level=20
01:03:1501:03:15#############################################
01:03:15## Ice overrides
01:03:15##
01:03:15## Though not used directly by OMERO, a number
01:03:15## of properties prefixed with "Ice.*" will
01:03:15## alter the behavior of the OMERO runtime
01:03:15## by configuring the Ice communicators. For a
01:03:15## full listing see:
01:03:15##
01:03:15## http://doc.zeroc.com/display/Ice/Property+Reference01:03:15## For more information see
01:03:15## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start01:03:15#############################################
01:03:1501:03:15# Disable IPv6 by setting to 0. Only needed in
01:03:15# certain situations.
01:03:15Ice.IPv6=1
01:03:1501:03:15# Glacier2Template IceSSL defaults and overrides,
01:03:15# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
01:03:15# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
01:03:15# update the corresponding IceSSL. property.
01:03:15omero.glacier2.IceSSL=
01:03:1501:03:15# Glacier2Template SSL maximum allowed protocol (mac bug)
01:03:15omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
01:03:15# Glacier2Template SSL allowed cipher suites
01:03:15omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
01:03:15# Glacier2Template SSL verification requirements
01:03:15omero.glacier2.IceSSL.VerifyPeer=0
01:03:15# Glacier2Template SSL allowed protocols
01:03:15omero.glacier2.IceSSL.Protocols=tls1
01:03:1501:03:15# Override the default set of OMERO services.
01:03:15# For example, to run OMERO.server with Blitz and Tables only
01:03:15# (i.e. disable Processor, DropBox, Indexer, PixelData)
01:03:15# set this to ``master:Blitz-0,Tables-0``.
01:03:15# Also use this to distribute OMERO services across multiple nodes,
01:03:15# for example:
01:03:15# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
01:03:15# See
01:03:15# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples01:03:15omero.server.nodedescriptors=
01:03:1501:03:15#############################################
01:03:15## Darwin (OS X) specific defaults for templated configuration files only.
01:03:15## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
01:03:15## file.
01:03:15## Do not set these properties in ``omero config``, instead set the original
01:03:15## ``xxx.yyy`` property
01:03:15#############################################
01:03:15_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
01:03:1501:03:15## (For documentation only)
01:03:15# Name of the Python module to use when starting the Tables service
01:03:15omero.tables.module=runTables
01:03:1501:03:15#############################################
01:03:15## Server product name for release artifacts
01:03:15#############################################
01:03:15product.name=OMERO.server
01:03:1501:03:15#############################################
01:03:15### Properties below this marker are ignored by
01:03:15### omero.install.config_parser.PropertyParser
01:03:15### END
01:03:1501:03:15#############################################
01:03:15## Library versions
01:03:15#############################################
01:03:15##
01:03:15versions.findbugs=1.2.1
01:03:15versions.ice36=3.6.5
01:03:15versions.ice36_lib=36
01:03:15## internal
01:03:15versions.omeroshares36=3.6.3
01:03:15versions.omeromock36=3.6.3
01:03:15versions.icedb36=3.6.3
01:03:15versions.ipython=1.2.1
01:03:1501:03:15versions.janino=2.5.10
01:03:1501:03:15versions.reportng=1.1.1
01:03:1501:03:15versions.testng=7.5
01:03:15versions.velocity=1.4
01:03:1501:03:15versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE01:03:15versions.omero-scripts-url=${versions.omero-pypi}
01:03:1501:03:15###
01:03:15### Appended Values
01:03:15###
01:03:1501:03:15## Internal dependencies'
01:03:15+ echo '##
01:03:15## omero.properties
01:03:15## ----------------
01:03:15##
01:03:15## DO NOT EDIT!
01:03:15##
01:03:15##
01:03:15## Any of these properties can be altered by using `omero config`. MODIFYING
01:03:15## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
01:03:15## at compile time!
01:03:15##
01:03:15## For an overview of these properties, see
01:03:15## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html01:03:15##
01:03:15## Properties marked with "DEVELOPMENT" should not be used in production.
01:03:1501:03:15# Comma separated list of Ice transports available to clients. The default
01:03:15# value ("ssl,tcp") instructs Ice to open the ports specified by the
01:03:15# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
01:03:15# will prevent all non-encrypted connections to the OMERO server.
01:03:15#
01:03:15# Additionally, there are two experimental values for using websockets:
01:03:15# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
01:03:15# that are opened are controlled by the omero.ports.ws and omero.ports.wss
01:03:15# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
01:03:15#
01:03:15# Note: When using websockets behind a web server like nginx, additional
01:03:15# configuration may be needed.
01:03:15omero.client.icetransports=ssl,tcp
01:03:1501:03:15# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
01:03:15# server
01:03:15omero.ports.prefix=
01:03:1501:03:15# The Glacier2 SSL port number to use
01:03:15omero.ports.ssl=4064
01:03:1501:03:15# The Glacier2 TCP port number to use (unencrypted)
01:03:15omero.ports.tcp=4063
01:03:1501:03:15# The Glacier2 WSS port number to use
01:03:15omero.ports.wss=4066
01:03:1501:03:15# The Glacier2 WS port number to use (unencrypted)
01:03:15omero.ports.ws=4065
01:03:1501:03:15# The IceGrid registry port number to use
01:03:15omero.ports.registry=4061
01:03:1501:03:15#############################################
01:03:15## JVM configuration
01:03:15##
01:03:15## Note: changes to the omero.jvmcfg properties
01:03:15## will *not* be reflected in OMERO.server
01:03:15## since they are defined in OMERO.py.
01:03:15#############################################
01:03:15## (For documentation only)
01:03:15# Memory strategy which will be used by default.
01:03:15# Options include: percent, manual
01:03:15omero.jvmcfg.strategy=percent
01:03:1501:03:15## (For documentation only)
01:03:15# Explicit value for the `-Xmx` argument, e.g.
01:03:15# "1g"
01:03:15omero.jvmcfg.heap_size=
01:03:1501:03:15## (For documentation only)
01:03:15# Explicit value for the MaxPermSize argument
01:03:15# to the JVM, e.g. "500M". Ignored for Java8+
01:03:15omero.jvmcfg.perm_gen=
01:03:1501:03:15## (For documentation only)
01:03:15# Toggles on or off heap dumps on OOMs. Default is "off".
01:03:15# The special value "tmp" will create the heap dumps in
01:03:15# your temp directory.
01:03:15omero.jvmcfg.heap_dump=
01:03:1501:03:15## (For documentation only)
01:03:15# Used only by the percent strategy. An integer between 0
01:03:15# and 100 which is the percent of active memory that will
01:03:15# be used by the service.
01:03:15omero.jvmcfg.percent=
01:03:1501:03:15## (For documentation only)
01:03:15# Contains other parameters which should be passed to the
01:03:15# JVM. The value of "append" is treated as if it were on
01:03:15# the command line so will be separated on whitespace.
01:03:15# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
01:03:15# results in two new arguments.
01:03:15# Note that when using `config set` from the command line
01:03:15# one may need to give a prior `--` option to prevent a value
01:03:15# starting with `-` from already being parsed as an option,
01:03:15# and values may need quoting to prevent whitespace or other
01:03:15# significant characters from being interpreted prematurely.
01:03:1501:03:15omero.jvmcfg.append=
01:03:1501:03:15## (For documentation only)
01:03:15# Manual override of the total system memory that
01:03:15# OMERO will *think* is present on the local OS (MB).
01:03:15# If unset, an attempt will be made to detect the actual
01:03:15# amount: first by using the Python library `psutil` and
01:03:15# if that is not installed, by running a Java tool. If
01:03:15# neither works, 4.0GB is assumed.
01:03:15omero.jvmcfg.system_memory=
01:03:1501:03:15## (For documentation only)
01:03:15# Suggestion for strategies as to the minimum memory
01:03:15# that they will use for calculating JVM settings (MB).
01:03:15omero.jvmcfg.min_system_memory=3414
01:03:1501:03:15## (For documentation only)
01:03:15# Suggestion for strategies as to the maximum memory
01:03:15# that they will use for calculating JVM settings (MB).
01:03:15omero.jvmcfg.max_system_memory=48000
01:03:1501:03:1501:03:15#############################################
01:03:15## Logging properties
01:03:15##
01:03:15## Note: changes to the default omero.logging values in
01:03:15## this file will *not* be reflected in OMERO.server
01:03:15## since they are defined in OMERO.py
01:03:15#############################################
01:03:1501:03:15## (For documentation only)
01:03:15# Relative server directory where the log files should be stored.
01:03:15omero.logging.directory=var/log/
01:03:1501:03:15## (For documentation only)
01:03:15# Whether the server log files should be rotated at a certain time
01:03:15# interval. If true, log files will be rolled over at midnight.
01:03:15# Otherwise, log files will be rolled over at a predetermined size,
01:03:15# see omero.logging.logsize for more information.
01:03:15omero.logging.timedlog=false
01:03:1501:03:15## (For documentation only)
01:03:15# If omero.logging.timedlog is false or unset, specifies the
01:03:15# maximum size of the server log files in bytes above which a
01:03:15# new log file should be created.
01:03:15omero.logging.logsize=5000000
01:03:1501:03:15## (For documentation only)
01:03:15# If omero.logging.timedlog is false or unset, specifies the
01:03:15# number of old server log files that should be kept. Old log
01:03:15# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
01:03:15omero.logging.lognum=9
01:03:1501:03:15## (For documentation only)
01:03:15# Specifies the threshold for the Python servers log files. Logging messages
01:03:15# which are less severe than this value will be ignored. For a list of
01:03:15# available values, see https://docs.python.org/3/library/logging.html#levels.
01:03:15omero.logging.level=20
01:03:1501:03:15#############################################
01:03:15## Ice overrides
01:03:15##
01:03:15## Though not used directly by OMERO, a number
01:03:15## of properties prefixed with "Ice.*" will
01:03:15## alter the behavior of the OMERO runtime
01:03:15## by configuring the Ice communicators. For a
01:03:15## full listing see:
01:03:15##
01:03:15## http://doc.zeroc.com/display/Ice/Property+Reference01:03:15## For more information see
01:03:15## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start01:03:15#############################################
01:03:1501:03:15# Disable IPv6 by setting to 0. Only needed in
01:03:15# certain situations.
01:03:15Ice.IPv6=1
01:03:1501:03:15# Glacier2Template IceSSL defaults and overrides,
01:03:15# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
01:03:15# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
01:03:15# update the corresponding IceSSL. property.
01:03:15omero.glacier2.IceSSL=
01:03:1501:03:15# Glacier2Template SSL maximum allowed protocol (mac bug)
01:03:15omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
01:03:15# Glacier2Template SSL allowed cipher suites
01:03:15omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
01:03:15# Glacier2Template SSL verification requirements
01:03:15omero.glacier2.IceSSL.VerifyPeer=0
01:03:15# Glacier2Template SSL allowed protocols
01:03:15omero.glacier2.IceSSL.Protocols=tls1
01:03:1501:03:15# Override the default set of OMERO services.
01:03:15# For example, to run OMERO.server with Blitz and Tables only
01:03:15# (i.e. disable Processor, DropBox, Indexer, PixelData)
01:03:15# set this to ``master:Blitz-0,Tables-0``.
01:03:15# Also use this to distribute OMERO services across multiple nodes,
01:03:15# for example:
01:03:15# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
01:03:15# See
01:03:15# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples01:03:15omero.server.nodedescriptors=
01:03:1501:03:15#############################################
01:03:15## Darwin (OS X) specific defaults for templated configuration files only.
01:03:15## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
01:03:15## file.
01:03:15## Do not set these properties in ``omero config``, instead set the original
01:03:15## ``xxx.yyy`` property
01:03:15#############################################
01:03:15_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
01:03:1501:03:15## (For documentation only)
01:03:15# Name of the Python module to use when starting the Tables service
01:03:15omero.tables.module=runTables
01:03:1501:03:15#############################################
01:03:15## Server product name for release artifacts
01:03:15#############################################
01:03:15product.name=OMERO.server
01:03:1501:03:15#############################################
01:03:15### Properties below this marker are ignored by
01:03:15### omero.install.config_parser.PropertyParser
01:03:15### END
01:03:1501:03:15#############################################
01:03:15## Library versions
01:03:15#############################################
01:03:15##
01:03:15versions.findbugs=1.2.1
01:03:15versions.ice36=3.6.5
01:03:15versions.ice36_lib=36
01:03:15## internal
01:03:15versions.omeroshares36=3.6.3
01:03:15versions.omeromock36=3.6.3
01:03:15versions.icedb36=3.6.3
01:03:15versions.ipython=1.2.1
01:03:1501:03:15versions.janino=2.5.10
01:03:1501:03:15versions.reportng=1.1.1
01:03:1501:03:15versions.testng=7.5
01:03:15versions.velocity=1.4
01:03:1501:03:15versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE01:03:15versions.omero-scripts-url=${versions.omero-pypi}
01:03:1501:03:15###
01:03:15### Appended Values
01:03:15###
01:03:1501:03:15## Internal dependencies'
01:03:15+ echo versions.omero-pypi=https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/01:03:15+ echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive01:03:15+ echo versions.scripts-prefix=
01:03:15+ echo versions.scripts=merge_ci
01:03:15+ cat /home/omero/workspace/OMERO-push/version.properties
01:03:15+ git commit -a -m 'Add version.properties to etc/omero.properties'
01:03:15[detached HEAD 171f76ee69] Add version.properties to etc/omero.properties
01:03:15 1 file changed, 47 insertions(+), 7 deletions(-)
01:03:15+ git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci
01:03:16To github.com:snoopycrimecop/openmicroscopy.git
01:03:16 + d55898cf80...171f76ee69 HEAD -> merge_ci (forced update)
01:03:16Finished: SUCCESS
![[Jenkins]](/jenkins/static/9ed1fe1f/images/svgs/logo.svg){kind=logo}
