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Started by upstream project "Trigger" build number 133
originally caused by:
 Started by timer
[Pipeline] Start of Pipeline
[Pipeline] node
Running on testintegration in /home/omero/workspace/OMERO-python-superbuild-push
[Pipeline] {
[Pipeline] library
Loading library recursiveMerge@master
Attempting to resolve master from remote references...
 > git --version # timeout=10
 > git --version # 'git version 2.39.2'
 > git ls-remote -- https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10
Found match: refs/heads/master revision f061dff15033c5cd55249a383f52c15ca4a0e5cf
The recommended git tool is: NONE
No credentials specified
 > git rev-parse --resolve-git-dir /var/jenkins_home/jobs/OMERO-python-superbuild-push/workspace@libs/3527f795de077758b82663f7b48798100750860c75e4099522d51863b08dc748/.git # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10
Fetching without tags
Fetching upstream changes from https://github.com/ome/jenkins-library-recursivemerge.git
 > git --version # timeout=10
 > git --version # 'git version 2.39.2'
 > git fetch --no-tags --force --progress -- https://github.com/ome/jenkins-library-recursivemerge.git +refs/heads/*:refs/remotes/origin/* # timeout=10
Checking out Revision f061dff15033c5cd55249a383f52c15ca4a0e5cf (master)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f f061dff15033c5cd55249a383f52c15ca4a0e5cf # timeout=10
Commit message: "Merge pull request #17 from jburel/python3"
 > git rev-list --no-walk f061dff15033c5cd55249a383f52c15ca4a0e5cf # timeout=10
[Pipeline] checkout
The recommended git tool is: NONE
No credentials specified
Fetching changes from the remote Git repository
Checking out Revision 46d23a10cf256e32fdc6117450f4d20a3cff5c17 (refs/remotes/origin/master)
 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-python-superbuild-push/.git # timeout=10
 > git config remote.origin.url https://github.com/ome/omero-python-superbuild.git # timeout=10
Fetching upstream changes from https://github.com/ome/omero-python-superbuild.git
 > git --version # timeout=10
 > git --version # 'git version 2.39.3'
 > git fetch --tags --force --progress -- https://github.com/ome/omero-python-superbuild.git +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10
 > git config core.sparsecheckout # timeout=10
 > git checkout -f 46d23a10cf256e32fdc6117450f4d20a3cff5c17 # timeout=10
Commit message: "Merge pull request #284 from ome/dependabot/submodules/omero-web-5a2cd79"
 > git rev-list --no-walk 46d23a10cf256e32fdc6117450f4d20a3cff5c17 # timeout=10
Cleaning workspace
 > git rev-parse --verify HEAD # timeout=10
Resetting working tree
 > git reset --hard # timeout=10
 > git clean -fdx # timeout=10
 > git submodule foreach --recursive git reset --hard # timeout=10
 > git submodule foreach --recursive git clean -fdx # timeout=10
 > git remote # timeout=10
 > git submodule init # timeout=10
 > git submodule sync # timeout=10
 > git config --get remote.origin.url # timeout=10
 > git submodule init # timeout=10
 > git config -f .gitmodules --get-regexp ^submodule\.(.+)\.url # timeout=10
 > git config --get submodule.omero-py.url # timeout=10
 > git config -f .gitmodules --get submodule.omero-py.path # timeout=10
 > git config --get submodule.omero-web.url # timeout=10
 > git config -f .gitmodules --get submodule.omero-web.path # timeout=10
 > git config --get submodule.omero-marshal.url # timeout=10
 > git config -f .gitmodules --get submodule.omero-marshal.path # timeout=10
 > git config --get submodule.omero-dropbox.url # timeout=10
 > git config -f .gitmodules --get submodule.omero-dropbox.path # timeout=10
 > git config --get submodule.omero-scripts.url # timeout=10
 > git config -f .gitmodules --get submodule.omero-scripts.path # timeout=10
 > git submodule update --init --recursive omero-py # timeout=10
 > git submodule update --init --recursive omero-web # timeout=10
 > git submodule update --init --recursive omero-marshal # timeout=10
 > git submodule update --init --recursive omero-dropbox # timeout=10
 > git submodule update --init --recursive omero-scripts # timeout=10
[Pipeline] pwd
[Pipeline] copyArtifacts
Copied 1 artifact from "OMERO-build-push" build number 115
[Pipeline] sh
+ pushd build
~/workspace/OMERO-python-superbuild-push/build ~/workspace/OMERO-python-superbuild-push
+ curl -sfL https://github.com/ome/build-infra/archive/master.tar.gz
+ tar -zxf -
+ popd
~/workspace/OMERO-python-superbuild-push
+ python3 -m venv build/venv
+ . build/venv/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/omero/workspace/OMERO-python-superbuild-push/build/venv
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/home/omero/workspace/OMERO-python-superbuild-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ PS1='(venv) '
++ export PS1
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
+ python3 -m pip install -U pip
Requirement already satisfied: pip in ./build/venv/lib/python3.9/site-packages (21.2.3)
Collecting pip
  Using cached pip-24.1.2-py3-none-any.whl (1.8 MB)
Installing collected packages: pip
  Attempting uninstall: pip
    Found existing installation: pip 21.2.3
    Uninstalling pip-21.2.3:
      Successfully uninstalled pip-21.2.3
Successfully installed pip-24.1.2
+ python3 -m pip install scc
Collecting scc
  Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB)
Collecting PyGithub>=1.54 (from scc)
  Using cached PyGithub-2.3.0-py3-none-any.whl.metadata (3.8 kB)
Collecting PyYAML>=5.1 (from scc)
  Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
Collecting future (from scc)
  Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
Collecting ruamel.yaml (from scc)
  Using cached ruamel.yaml-0.18.6-py3-none-any.whl.metadata (23 kB)
Collecting ruamel.yaml.jinja2 (from scc)
  Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB)
Collecting six (from scc)
  Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB)
Collecting urllib3<2 (from scc)
  Using cached urllib3-1.26.19-py2.py3-none-any.whl.metadata (49 kB)
Collecting yaclifw<0.3,>=0.2.0 (from scc)
  Using cached yaclifw-0.2.0-py3-none-any.whl
Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc)
  Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl.metadata (8.6 kB)
Collecting requests>=2.14.0 (from PyGithub>=1.54->scc)
  Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB)
Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
  Using cached PyJWT-2.8.0-py3-none-any.whl.metadata (4.2 kB)
Collecting typing-extensions>=4.0.0 (from PyGithub>=1.54->scc)
  Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB)
Collecting Deprecated (from PyGithub>=1.54->scc)
  Using cached Deprecated-1.2.14-py2.py3-none-any.whl.metadata (5.4 kB)
Collecting ruamel.yaml.clib>=0.2.7 (from ruamel.yaml->scc)
  Using cached ruamel.yaml.clib-0.2.8-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl.metadata (2.2 kB)
Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
  Using cached cryptography-42.0.8-cp39-abi3-manylinux_2_28_x86_64.whl.metadata (5.3 kB)
Collecting cffi>=1.4.1 (from pynacl>=1.4.0->PyGithub>=1.54->scc)
  Using cached cffi-1.16.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (1.5 kB)
Collecting charset-normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc)
  Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB)
Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc)
  Using cached idna-3.7-py3-none-any.whl.metadata (9.9 kB)
Collecting certifi>=2017.4.17 (from requests>=2.14.0->PyGithub>=1.54->scc)
  Using cached certifi-2024.7.4-py3-none-any.whl.metadata (2.2 kB)
Collecting wrapt<2,>=1.10 (from Deprecated->PyGithub>=1.54->scc)
  Using cached wrapt-1.16.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB)
Collecting pycparser (from cffi>=1.4.1->pynacl>=1.4.0->PyGithub>=1.54->scc)
  Using cached pycparser-2.22-py3-none-any.whl.metadata (943 bytes)
Using cached scc-0.20.0-py3-none-any.whl (48 kB)
Using cached PyGithub-2.3.0-py3-none-any.whl (354 kB)
Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB)
Using cached urllib3-1.26.19-py2.py3-none-any.whl (143 kB)
Using cached future-1.0.0-py3-none-any.whl (491 kB)
Using cached ruamel.yaml-0.18.6-py3-none-any.whl (117 kB)
Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB)
Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
Using cached PyJWT-2.8.0-py3-none-any.whl (22 kB)
Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (856 kB)
Using cached requests-2.32.3-py3-none-any.whl (64 kB)
Using cached ruamel.yaml.clib-0.2.8-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl (562 kB)
Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB)
Using cached Deprecated-1.2.14-py2.py3-none-any.whl (9.6 kB)
Using cached certifi-2024.7.4-py3-none-any.whl (162 kB)
Using cached cffi-1.16.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (443 kB)
Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB)
Using cached cryptography-42.0.8-cp39-abi3-manylinux_2_28_x86_64.whl (3.9 MB)
Using cached idna-3.7-py3-none-any.whl (66 kB)
Using cached wrapt-1.16.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (80 kB)
Using cached pycparser-2.22-py3-none-any.whl (117 kB)
Installing collected packages: wrapt, urllib3, typing-extensions, six, ruamel.yaml.clib, PyYAML, pyjwt, pycparser, idna, future, charset-normalizer, certifi, yaclifw, ruamel.yaml, requests, Deprecated, cffi, ruamel.yaml.jinja2, pynacl, cryptography, PyGithub, scc
Successfully installed Deprecated-1.2.14 PyGithub-2.3.0 PyYAML-6.0.1 certifi-2024.7.4 cffi-1.16.0 charset-normalizer-3.3.2 cryptography-42.0.8 future-1.0.0 idna-3.7 pycparser-2.22 pyjwt-2.8.0 pynacl-1.5.0 requests-2.32.3 ruamel.yaml-0.18.6 ruamel.yaml.clib-0.2.8 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.16.0 typing-extensions-4.12.2 urllib3-1.26.19 wrapt-1.16.0 yaclifw-0.2.0
[Pipeline] sh
+ export BASE_REPO=omero-python-superbuild.git
+ BASE_REPO=omero-python-superbuild.git
+ export BASE_BRANCH=master
+ BASE_BRANCH=master
+ export VERSION_LOG=/home/omero/workspace/OMERO-python-superbuild-push/build/version.tsv
+ VERSION_LOG=/home/omero/workspace/OMERO-python-superbuild-push/build/version.tsv
+ . build/venv/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/omero/workspace/OMERO-python-superbuild-push/build/venv
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/home/omero/workspace/OMERO-python-superbuild-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ PS1='(venv) '
++ export PS1
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
+ '[' merge_ci '!=' null ']'
+ export PUSH_BRANCH=merge_ci
+ PUSH_BRANCH=merge_ci
+ '[' null '!=' null ']'
+ export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment'
+ STATUS=success-only
+ MERGE_OPTIONS='-vvv --no-ask --reset --comment'
+ bash build/build-infra-master/recursive-merge
Merge base repository (no submodule updates)
2024-07-10 00:33:50,992 [  scc.config] DEBUG Found github.token
2024-07-10 00:33:50,995 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2024-07-10 00:33:51,244 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-10 00:33:51,667 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-10 00:33:52,073 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2024-07-10 00:33:52,074 [      scc.gh] DEBUG 4348 remaining from 5000 (Reset at 00:07
2024-07-10 00:33:52,075 [     scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-07-10 00:33:52,079 [     scc.git] DEBUG Check current status
2024-07-10 00:33:52,079 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-07-10 00:33:52,082 [     scc.git] DEBUG 46d23a1 Merge pull request #284 from ome/dependabot/submodules/omero-web-5a2cd79
2024-07-10 00:33:52,083 [     scc.git] DEBUG Calling 'git submodule status'
2024-07-10 00:33:52,120 [     scc.git] DEBUG  a4307f475a2690c4aa4f287864bad9d6d97ebb8f omero-dropbox (v5.7.0-1-ga4307f4)
2024-07-10 00:33:52,123 [     scc.git] DEBUG  cca4c2f7b6934b48b8ddb0e337c32d32cd4a07f3 omero-marshal (v0.9.0-4-gcca4c2f)
2024-07-10 00:33:52,126 [     scc.git] DEBUG  8d8108de02104c654741d65f0ecbbf11c85e329d omero-py (v5.19.3-1-g8d8108de)
2024-07-10 00:33:52,130 [     scc.git] DEBUG  c20d2734b711c659cecea83db6e2ebd7b7013636 omero-scripts (v5.8.2-3-gc20d273)
2024-07-10 00:33:52,151 [     scc.git] DEBUG  5a2cd79d7cb7847d560e98f1d11240794e7be47f omero-web (v5.26.0-3-g5a2cd79d7)
2024-07-10 00:33:52,156 [  scc.config] DEBUG Found remote.origin.url
2024-07-10 00:33:52,547 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild HTTP/1.1" 200 None
2024-07-10 00:33:53,010 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-07-10 00:33:53,428 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-07-10 00:33:53,852 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-07-10 00:33:54,277 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-07-10 00:33:54,278 [     scc.git] DEBUG Resetting...
2024-07-10 00:33:54,278 [     scc.git] DEBUG Calling 'git reset --hard HEAD'
2024-07-10 00:33:54,284 [     scc.git] DEBUG HEAD is now at 46d23a1 Merge pull request #284 from ome/dependabot/submodules/omero-web-5a2cd79
2024-07-10 00:33:54,284 [     scc.git] DEBUG Calling 'git submodule update --recursive'
2024-07-10 00:33:54,331 [     scc.git] DEBUG Check current status
2024-07-10 00:33:54,331 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-07-10 00:33:54,335 [     scc.git] DEBUG 46d23a1 Merge pull request #284 from ome/dependabot/submodules/omero-web-5a2cd79
2024-07-10 00:33:54,335 [     scc.git] DEBUG Calling 'git submodule status'
2024-07-10 00:33:54,371 [     scc.git] DEBUG  a4307f475a2690c4aa4f287864bad9d6d97ebb8f omero-dropbox (v5.7.0-1-ga4307f4)
2024-07-10 00:33:54,374 [     scc.git] DEBUG  cca4c2f7b6934b48b8ddb0e337c32d32cd4a07f3 omero-marshal (v0.9.0-4-gcca4c2f)
2024-07-10 00:33:54,377 [     scc.git] DEBUG  8d8108de02104c654741d65f0ecbbf11c85e329d omero-py (v5.19.3-1-g8d8108de)
2024-07-10 00:33:54,381 [     scc.git] DEBUG  c20d2734b711c659cecea83db6e2ebd7b7013636 omero-scripts (v5.8.2-3-gc20d273)
2024-07-10 00:33:54,384 [     scc.git] DEBUG  5a2cd79d7cb7847d560e98f1d11240794e7be47f omero-web (v5.26.0-3-g5a2cd79d7)
2024-07-10 00:33:54,384 [   scc.merge] INFO  Merging Pull Request(s) based on master
2024-07-10 00:33:54,385 [   scc.merge] INFO  Including Pull Request(s) opened by any public member of the organization
2024-07-10 00:33:54,385 [   scc.merge] INFO  Including Pull Request(s) labelled as include or dependencies
2024-07-10 00:33:54,385 [   scc.merge] INFO  Excluding Pull Request(s) staged as draft
2024-07-10 00:33:54,385 [   scc.merge] INFO  Excluding Pull Request(s) labelled as exclude or breaking
2024-07-10 00:33:54,385 [    scc.repo] DEBUG ## PRs found:
2024-07-10 00:33:54,703 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/pulls HTTP/1.1" 200 2
2024-07-10 00:33:54,704 [    scc.repo] DEBUG ## Branches found:
2024-07-10 00:33:54,704 [     scc.git] DEBUG Get sha1 of %s
2024-07-10 00:33:54,704 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-10 00:33:54,708 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-07-10 00:33:54,712 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-07-10 00:33:54,712 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-07-10 00:33:54,716 [     scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-07-10 00:33:54,720 [     scc.git] DEBUG Already up to date.

2024-07-10 00:33:54,720 [     scc.git] DEBUG ## Unique users: []
2024-07-10 00:33:54,720 [     scc.git] DEBUG Get sha1 of %s
2024-07-10 00:33:54,720 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-10 00:33:54,723 [     scc.git] DEBUG Calling 'git submodule update'
2024-07-10 00:33:54,764 [     scc.git] DEBUG Get sha1 of %s
2024-07-10 00:33:54,764 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-10 00:33:54,768 [     scc.git] DEBUG Calling 'git status --porcelain'
2024-07-10 00:33:54,895 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7f0a7f73faf0> has no local changes
2024-07-10 00:33:54,896 [     scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone

Repository: ome/omero-python-superbuild
Already up to date.


Generated by OMERO-python-superbuild-push#111 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/111/)'
2024-07-10 00:33:54,920 [     scc.git] DEBUG [detached HEAD f78d459] merge master -Dorg -Snone
2024-07-10 00:33:54,920 [   scc.merge] INFO  Repository: ome/omero-python-superbuild
2024-07-10 00:33:54,920 [   scc.merge] INFO  Already up to date.
2024-07-10 00:33:54,920 [   scc.merge] INFO  
2024-07-10 00:33:54,920 [   scc.merge] INFO  
2024-07-10 00:33:54,920 [   scc.merge] DEBUG Cleaning remote branches created for merging
2024-07-10 00:33:54,920 [     scc.git] DEBUG Calling 'git remote'
Synchronizing submodule url for 'omero-dropbox'
Synchronizing submodule url for 'omero-marshal'
Synchronizing submodule url for 'omero-py'
Synchronizing submodule url for 'omero-scripts'
Synchronizing submodule url for 'omero-web'
Merge all submodules using repository configuration:
base-branch: master

submodules:
  omero-scripts:
    base-branch: develop
2024-07-10 00:33:57,423 [  scc.config] DEBUG Found github.token
2024-07-10 00:33:57,425 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2024-07-10 00:33:57,605 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-10 00:33:58,021 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-10 00:33:58,419 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2024-07-10 00:33:58,420 [      scc.gh] DEBUG 4340 remaining from 5000 (Reset at 00:07
2024-07-10 00:33:58,421 [     scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-07-10 00:33:58,425 [     scc.git] DEBUG Check current status
2024-07-10 00:33:58,425 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-07-10 00:33:58,428 [     scc.git] DEBUG f78d459 merge master -Dorg -Snone
2024-07-10 00:33:58,428 [     scc.git] DEBUG Calling 'git submodule status'
2024-07-10 00:33:58,466 [     scc.git] DEBUG  a4307f475a2690c4aa4f287864bad9d6d97ebb8f omero-dropbox (v5.7.0-1-ga4307f4)
2024-07-10 00:33:58,468 [     scc.git] DEBUG  cca4c2f7b6934b48b8ddb0e337c32d32cd4a07f3 omero-marshal (v0.9.0-4-gcca4c2f)
2024-07-10 00:33:58,472 [     scc.git] DEBUG  8d8108de02104c654741d65f0ecbbf11c85e329d omero-py (v5.19.3-1-g8d8108de)
2024-07-10 00:33:58,475 [     scc.git] DEBUG  c20d2734b711c659cecea83db6e2ebd7b7013636 omero-scripts (v5.8.2-3-gc20d273)
2024-07-10 00:33:58,478 [     scc.git] DEBUG  5a2cd79d7cb7847d560e98f1d11240794e7be47f omero-web (v5.26.0-3-g5a2cd79d7)
2024-07-10 00:33:58,482 [  scc.config] DEBUG Found remote.origin.url
2024-07-10 00:33:58,482 [     scc.git] DEBUG Reading repository configuration from repositories.yml
2024-07-10 00:33:58,484 [     scc.git] DEBUG Repository configuration:
base-branch: master
submodules:
  omero-scripts:
    base-branch: develop

2024-07-10 00:33:58,944 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild HTTP/1.1" 200 None
2024-07-10 00:33:59,389 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-07-10 00:33:59,802 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-07-10 00:34:00,217 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-07-10 00:34:00,711 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-07-10 00:34:00,713 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-07-10 00:34:00,760 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-dropbox
2024-07-10 00:34:00,760 [     scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-07-10 00:34:00,764 [     scc.git] DEBUG Check current status
2024-07-10 00:34:00,764 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-07-10 00:34:00,767 [     scc.git] DEBUG a4307f4 Bump version: 5.7.0 → 5.7.1.dev0
2024-07-10 00:34:00,768 [     scc.git] DEBUG Calling 'git submodule status'
2024-07-10 00:34:00,808 [  scc.config] DEBUG Found remote.origin.url
2024-07-10 00:34:01,211 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox HTTP/1.1" 200 None
2024-07-10 00:34:01,653 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-07-10 00:34:02,128 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-07-10 00:34:02,548 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-07-10 00:34:02,954 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-07-10 00:34:02,955 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-07-10 00:34:03,012 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-07-10 00:34:03,014 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-marshal
2024-07-10 00:34:03,014 [     scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-07-10 00:34:03,019 [     scc.git] DEBUG Check current status
2024-07-10 00:34:03,019 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-07-10 00:34:03,024 [     scc.git] DEBUG cca4c2f Merge pull request #80 from sbesson/python312
2024-07-10 00:34:03,025 [     scc.git] DEBUG Calling 'git submodule status'
2024-07-10 00:34:03,075 [  scc.config] DEBUG Found remote.origin.url
2024-07-10 00:34:03,470 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal HTTP/1.1" 200 None
2024-07-10 00:34:03,954 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-07-10 00:34:04,369 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-07-10 00:34:04,778 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-07-10 00:34:05,206 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-07-10 00:34:05,208 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-07-10 00:34:05,247 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-07-10 00:34:05,248 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-py
2024-07-10 00:34:05,248 [     scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-07-10 00:34:05,253 [     scc.git] DEBUG Check current status
2024-07-10 00:34:05,253 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-07-10 00:34:05,257 [     scc.git] DEBUG 8d8108de Bump version: 5.19.3 → 5.19.4.dev0
2024-07-10 00:34:05,257 [     scc.git] DEBUG Calling 'git submodule status'
2024-07-10 00:34:05,302 [  scc.config] DEBUG Found remote.origin.url
2024-07-10 00:34:05,671 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py HTTP/1.1" 200 None
2024-07-10 00:34:06,123 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-07-10 00:34:06,539 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-07-10 00:34:06,950 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-07-10 00:34:07,361 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-07-10 00:34:07,363 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-07-10 00:34:07,414 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-07-10 00:34:07,415 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-scripts
2024-07-10 00:34:07,415 [     scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-07-10 00:34:07,419 [     scc.git] DEBUG Check current status
2024-07-10 00:34:07,420 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-07-10 00:34:07,424 [     scc.git] DEBUG c20d273 Merge pull request #221 from imcf/fix-typechecking
2024-07-10 00:34:07,424 [     scc.git] DEBUG Calling 'git submodule status'
2024-07-10 00:34:07,470 [  scc.config] DEBUG Found remote.origin.url
2024-07-10 00:34:07,471 [     scc.git] DEBUG Repository configuration:
base-branch: develop

2024-07-10 00:34:07,830 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts HTTP/1.1" 200 None
2024-07-10 00:34:08,300 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-07-10 00:34:08,717 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-07-10 00:34:09,152 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-07-10 00:34:09,584 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-07-10 00:34:09,585 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-07-10 00:34:09,623 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-07-10 00:34:09,624 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-web
2024-07-10 00:34:09,624 [     scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-07-10 00:34:09,628 [     scc.git] DEBUG Check current status
2024-07-10 00:34:09,629 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-07-10 00:34:09,633 [     scc.git] DEBUG 5a2cd79d7 Merge pull request #561 from jburel/numpy_less_than_2
2024-07-10 00:34:09,633 [     scc.git] DEBUG Calling 'git submodule status'
2024-07-10 00:34:09,672 [  scc.config] DEBUG Found remote.origin.url
2024-07-10 00:34:10,090 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web HTTP/1.1" 200 None
2024-07-10 00:34:10,537 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-07-10 00:34:10,949 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-07-10 00:34:11,382 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-07-10 00:34:11,799 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-07-10 00:34:11,801 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-07-10 00:34:11,844 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-07-10 00:34:11,844 [     scc.git] DEBUG Resetting...
2024-07-10 00:34:11,845 [     scc.git] DEBUG Calling 'git reset --hard HEAD'
2024-07-10 00:34:11,851 [     scc.git] DEBUG HEAD is now at f78d459 merge master -Dorg -Snone
2024-07-10 00:34:11,852 [     scc.git] DEBUG Calling 'git submodule update --recursive'
2024-07-10 00:34:11,907 [     scc.git] DEBUG Check current status
2024-07-10 00:34:11,908 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-07-10 00:34:11,912 [     scc.git] DEBUG f78d459 merge master -Dorg -Snone
2024-07-10 00:34:11,913 [     scc.git] DEBUG Calling 'git submodule status'
2024-07-10 00:34:11,965 [     scc.git] DEBUG  a4307f475a2690c4aa4f287864bad9d6d97ebb8f omero-dropbox (v5.7.0-1-ga4307f4)
2024-07-10 00:34:11,968 [     scc.git] DEBUG  cca4c2f7b6934b48b8ddb0e337c32d32cd4a07f3 omero-marshal (v0.9.0-4-gcca4c2f)
2024-07-10 00:34:11,972 [     scc.git] DEBUG  8d8108de02104c654741d65f0ecbbf11c85e329d omero-py (v5.19.3-1-g8d8108de)
2024-07-10 00:34:11,976 [     scc.git] DEBUG  c20d2734b711c659cecea83db6e2ebd7b7013636 omero-scripts (v5.8.2-3-gc20d273)
2024-07-10 00:34:11,979 [     scc.git] DEBUG  5a2cd79d7cb7847d560e98f1d11240794e7be47f omero-web (v5.26.0-3-g5a2cd79d7)
2024-07-10 00:34:11,980 [   scc.merge] INFO  Merging Pull Request(s) based on master
2024-07-10 00:34:11,981 [   scc.merge] INFO  Including Pull Request(s) opened by any public member of the organization
2024-07-10 00:34:11,981 [   scc.merge] INFO  Including Pull Request(s) labelled as include or dependencies
2024-07-10 00:34:11,981 [   scc.merge] INFO  Excluding Pull Request(s) staged as draft
2024-07-10 00:34:11,981 [   scc.merge] INFO  Excluding Pull Request(s) labelled as exclude or breaking
2024-07-10 00:34:11,981 [   scc.merge] INFO  Excluding Pull Request(s) without successful status
2024-07-10 00:34:11,981 [    scc.repo] DEBUG ## PRs found:
2024-07-10 00:34:12,244 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/pulls HTTP/1.1" 200 2
2024-07-10 00:34:12,245 [    scc.repo] DEBUG ## Branches found:
2024-07-10 00:34:12,245 [     scc.git] DEBUG Get sha1 of %s
2024-07-10 00:34:12,246 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-10 00:34:12,251 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-07-10 00:34:12,255 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-07-10 00:34:12,255 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-07-10 00:34:12,260 [     scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-07-10 00:34:12,264 [     scc.git] DEBUG Already up to date.

2024-07-10 00:34:12,264 [     scc.git] DEBUG ## Unique users: []
2024-07-10 00:34:12,264 [     scc.git] DEBUG Get sha1 of %s
2024-07-10 00:34:12,264 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-10 00:34:12,269 [     scc.git] DEBUG Calling 'git submodule update'
2024-07-10 00:34:12,308 [     scc.git] DEBUG Get sha1 of %s
2024-07-10 00:34:12,309 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-10 00:34:12,312 [    scc.repo] DEBUG ## PRs found:
2024-07-10 00:34:12,765 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/pulls HTTP/1.1" 200 None
2024-07-10 00:34:13,240 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/issues/16 HTTP/1.1" 200 None
2024-07-10 00:34:13,706 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/issues/16/comments HTTP/1.1" 200 None
2024-07-10 00:34:14,228 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/commits/f802993eba0b6514d0e31f0f7d5b996ffb54b452 HTTP/1.1" 200 None
2024-07-10 00:34:14,693 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/commits/f802993eba0b6514d0e31f0f7d5b996ffb54b452/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-07-10 00:34:15,276 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/commits/f802993eba0b6514d0e31f0f7d5b996ffb54b452 HTTP/1.1" 200 None
2024-07-10 00:34:15,718 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/statuses/f802993eba0b6514d0e31f0f7d5b996ffb54b452?per_page=1 HTTP/1.1" 200 2
2024-07-10 00:34:15,719 [    scc.repo] DEBUG   - PR 16 joshmoore 'Review all instances of whitelist/blacklist'
2024-07-10 00:34:15,719 [    scc.repo] DEBUG ## Branches found:
2024-07-10 00:34:15,719 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-dropbox
2024-07-10 00:34:15,719 [     scc.git] DEBUG Get sha1 of %s
2024-07-10 00:34:15,719 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-10 00:34:15,724 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-07-10 00:34:15,728 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-07-10 00:34:15,728 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-07-10 00:34:15,733 [     scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-07-10 00:34:15,737 [     scc.git] DEBUG Already up to date.

2024-07-10 00:34:15,737 [     scc.git] DEBUG Calling 'git fetch origin pull/16/head'
2024-07-10 00:34:16,306 [     scc.git] DEBUG From https://github.com/ome/omero-dropbox
2024-07-10 00:34:16,306 [     scc.git] DEBUG  * branch            refs/pull/16/head -> FETCH_HEAD
2024-07-10 00:34:16,312 [     scc.git] DEBUG ## Unique users: []
2024-07-10 00:34:16,312 [     scc.git] DEBUG Get sha1 of %s
2024-07-10 00:34:16,312 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-10 00:34:16,317 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...f802993eba0b6514d0e31f0f7d5b996ffb54b452'
2024-07-10 00:34:16,322 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-10 00:34:16,327 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Review all instances of whitelist/blacklist) f802993eba0b6514d0e31f0f7d5b996ffb54b452'
2024-07-10 00:34:16,440 [     scc.git] DEBUG Auto-merging src/fsAbstractPlatformMonitor.py
2024-07-10 00:34:16,440 [     scc.git] DEBUG Auto-merging src/fsDirectory.py
2024-07-10 00:34:16,441 [     scc.git] DEBUG Auto-merging src/fsDropBox.py
2024-07-10 00:34:16,441 [     scc.git] DEBUG Auto-merging src/fsLists.py
2024-07-10 00:34:16,441 [     scc.git] DEBUG Auto-merging src/fsMac-10-5-Monitor.py
2024-07-10 00:34:16,441 [     scc.git] DEBUG Auto-merging src/fsMonitor.py
2024-07-10 00:34:16,441 [     scc.git] DEBUG Auto-merging src/fsMonitorServer.py
2024-07-10 00:34:16,441 [     scc.git] DEBUG Auto-merging src/fsPyinotifyMonitor.py
2024-07-10 00:34:16,441 [     scc.git] DEBUG Auto-merging src/fsWin-XP-Monitor.py
2024-07-10 00:34:16,441 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-07-10 00:34:16,446 [     scc.git] DEBUG  src/fsAbstractPlatformMonitor.py |  6 +++---
2024-07-10 00:34:16,446 [     scc.git] DEBUG  src/fsDirectory.py               | 46 ++++++++++++++++++++--------------------
2024-07-10 00:34:16,446 [     scc.git] DEBUG  src/fsDropBox.py                 | 24 ++++++++++-----------
2024-07-10 00:34:16,446 [     scc.git] DEBUG  src/fsLists.py                   | 14 ++++++------
2024-07-10 00:34:16,446 [     scc.git] DEBUG  src/fsMac-10-5-Monitor.py        | 10 ++++-----
2024-07-10 00:34:16,446 [     scc.git] DEBUG  src/fsMonitor.py                 | 24 ++++++++++-----------
2024-07-10 00:34:16,446 [     scc.git] DEBUG  src/fsMonitorServer.py           | 10 ++++-----
2024-07-10 00:34:16,446 [     scc.git] DEBUG  src/fsPyinotifyMonitor.py        |  8 +++----
2024-07-10 00:34:16,446 [     scc.git] DEBUG  src/fsWin-XP-Monitor.py          | 20 ++++++++---------
2024-07-10 00:34:16,446 [     scc.git] DEBUG  9 files changed, 81 insertions(+), 81 deletions(-)
2024-07-10 00:34:16,610 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-10 00:34:16,611 [     scc.git] DEBUG Calling 'git submodule update'
2024-07-10 00:34:16,662 [     scc.git] DEBUG Get sha1 of %s
2024-07-10 00:34:16,663 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-10 00:34:16,667 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-07-10 00:34:16,725 [     scc.git] DEBUG Calling 'git status --porcelain'
2024-07-10 00:34:16,735 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7fb9b2733370> has no local changes
2024-07-10 00:34:16,735 [     scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only

Repository: ome/omero-dropbox
Already up to date.

Merged PRs:
  - PR 16 joshmoore 'Review all instances of whitelist/blacklist'

Generated by OMERO-python-superbuild-push#111 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/111/)'
2024-07-10 00:34:16,745 [     scc.git] DEBUG [detached HEAD 3e2331d] merge master -Dorg -Ssuccess-only
2024-07-10 00:34:16,746 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-07-10 00:34:16,746 [    scc.repo] DEBUG ## PRs found:
2024-07-10 00:34:17,135 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/pulls HTTP/1.1" 200 None
2024-07-10 00:34:17,599 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/69 HTTP/1.1" 200 None
2024-07-10 00:34:18,044 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/69/comments HTTP/1.1" 200 None
2024-07-10 00:34:18,538 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/commits/1cbe0bebb081ffedb835c966ecb434d33502ceca HTTP/1.1" 200 None
2024-07-10 00:34:18,993 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/commits/1cbe0bebb081ffedb835c966ecb434d33502ceca/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-07-10 00:34:19,535 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/commits/1cbe0bebb081ffedb835c966ecb434d33502ceca HTTP/1.1" 200 None
2024-07-10 00:34:19,965 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/statuses/1cbe0bebb081ffedb835c966ecb434d33502ceca?per_page=1 HTTP/1.1" 200 2
2024-07-10 00:34:19,966 [    scc.repo] DEBUG   - PR 69 will-moore 'Roi encoder allows Shape None'
2024-07-10 00:34:20,411 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/34 HTTP/1.1" 200 None
2024-07-10 00:34:20,885 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/34/comments HTTP/1.1" 200 None
2024-07-10 00:34:21,344 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/33 HTTP/1.1" 200 None
2024-07-10 00:34:21,819 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/33/comments HTTP/1.1" 200 None
2024-07-10 00:34:21,821 [    scc.repo] DEBUG ## Branches found:
2024-07-10 00:34:21,821 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-marshal
2024-07-10 00:34:21,821 [     scc.git] DEBUG Get sha1 of %s
2024-07-10 00:34:21,821 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-10 00:34:21,826 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-07-10 00:34:21,831 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-07-10 00:34:21,831 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-07-10 00:34:21,836 [     scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-07-10 00:34:21,842 [     scc.git] DEBUG Already up to date.

2024-07-10 00:34:21,842 [     scc.git] DEBUG Calling 'git fetch origin pull/69/head'
2024-07-10 00:34:22,276 [     scc.git] DEBUG From https://github.com/ome/omero-marshal
2024-07-10 00:34:22,276 [     scc.git] DEBUG  * branch            refs/pull/69/head -> FETCH_HEAD
2024-07-10 00:34:22,282 [     scc.git] DEBUG ## Unique users: []
2024-07-10 00:34:22,283 [     scc.git] DEBUG Get sha1 of %s
2024-07-10 00:34:22,283 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-10 00:34:22,287 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...1cbe0bebb081ffedb835c966ecb434d33502ceca'
2024-07-10 00:34:22,294 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-10 00:34:22,302 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 69 (Roi encoder allows Shape None) 1cbe0bebb081ffedb835c966ecb434d33502ceca'
2024-07-10 00:34:22,314 [     scc.git] DEBUG Auto-merging tests/unit/conftest.py
2024-07-10 00:34:22,315 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-07-10 00:34:22,318 [     scc.git] DEBUG  omero_marshal/encode/encoders/roi.py | 5 +++--
2024-07-10 00:34:22,318 [     scc.git] DEBUG  tests/unit/conftest.py               | 5 ++++-
2024-07-10 00:34:22,318 [     scc.git] DEBUG  2 files changed, 7 insertions(+), 3 deletions(-)
2024-07-10 00:34:22,477 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-10 00:34:22,479 [     scc.git] DEBUG Calling 'git submodule update'
2024-07-10 00:34:22,526 [     scc.git] DEBUG Get sha1 of %s
2024-07-10 00:34:22,527 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-10 00:34:22,532 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-07-10 00:34:22,575 [     scc.git] DEBUG Calling 'git status --porcelain'
2024-07-10 00:34:22,582 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7fb9b2733550> has no local changes
2024-07-10 00:34:22,582 [     scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only

Repository: ome/omero-marshal
Excluded PRs:
  - PR 34 chris-allan 'Initial support for Event' (exclude comment)
  - PR 33 chris-allan 'Encode/Decode Experimenters with ExperimenterGroup' (exclude comment)
Already up to date.

Merged PRs:
  - PR 69 will-moore 'Roi encoder allows Shape None'

Generated by OMERO-python-superbuild-push#111 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/111/)'
2024-07-10 00:34:22,592 [     scc.git] DEBUG [detached HEAD 3e84bd4] merge master -Dorg -Ssuccess-only
2024-07-10 00:34:22,592 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-07-10 00:34:22,592 [    scc.repo] DEBUG ## PRs found:
2024-07-10 00:34:23,159 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/pulls HTTP/1.1" 200 None
2024-07-10 00:34:23,628 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/419 HTTP/1.1" 200 None
2024-07-10 00:34:24,135 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c7f2c9f7a4aa872c310b46e1ab27474c1058f4df HTTP/1.1" 200 None
2024-07-10 00:34:24,646 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c7f2c9f7a4aa872c310b46e1ab27474c1058f4df/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-07-10 00:34:25,101 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c7f2c9f7a4aa872c310b46e1ab27474c1058f4df/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-07-10 00:34:25,651 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c7f2c9f7a4aa872c310b46e1ab27474c1058f4df HTTP/1.1" 200 None
2024-07-10 00:34:26,076 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/c7f2c9f7a4aa872c310b46e1ab27474c1058f4df?per_page=1 HTTP/1.1" 200 None
2024-07-10 00:34:26,490 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c7f2c9f7a4aa872c310b46e1ab27474c1058f4df HTTP/1.1" 200 None
2024-07-10 00:34:26,910 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c7f2c9f7a4aa872c310b46e1ab27474c1058f4df/status HTTP/1.1" 200 None
2024-07-10 00:34:26,911 [    scc.repo] DEBUG   - PR 419 sbesson 'admin rewrite: make OMERO.tables module configurable'
2024-07-10 00:34:27,382 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/418 HTTP/1.1" 200 None
2024-07-10 00:34:27,857 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/418/comments HTTP/1.1" 200 None
2024-07-10 00:34:28,378 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/8636894b410e1ed99ad9a9819673808c4589fe36 HTTP/1.1" 200 None
2024-07-10 00:34:28,852 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/8636894b410e1ed99ad9a9819673808c4589fe36/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-07-10 00:34:29,568 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/8636894b410e1ed99ad9a9819673808c4589fe36/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-07-10 00:34:30,057 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/8636894b410e1ed99ad9a9819673808c4589fe36 HTTP/1.1" 200 None
2024-07-10 00:34:30,486 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/8636894b410e1ed99ad9a9819673808c4589fe36?per_page=1 HTTP/1.1" 200 None
2024-07-10 00:34:30,926 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/8636894b410e1ed99ad9a9819673808c4589fe36 HTTP/1.1" 200 None
2024-07-10 00:34:31,373 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/8636894b410e1ed99ad9a9819673808c4589fe36/status HTTP/1.1" 200 None
2024-07-10 00:34:31,375 [    scc.repo] DEBUG   - PR 418 chris-allan 'Allow a caller to ignore row numbers'
2024-07-10 00:34:31,838 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/417 HTTP/1.1" 200 None
2024-07-10 00:34:32,298 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/417/comments HTTP/1.1" 200 None
2024-07-10 00:34:32,816 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/78935e06b5466c326a526f704ad68bad8fcfdc3a HTTP/1.1" 200 None
2024-07-10 00:34:33,276 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/78935e06b5466c326a526f704ad68bad8fcfdc3a/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-07-10 00:34:33,735 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/78935e06b5466c326a526f704ad68bad8fcfdc3a/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-07-10 00:34:34,212 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/78935e06b5466c326a526f704ad68bad8fcfdc3a HTTP/1.1" 200 None
2024-07-10 00:34:34,723 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/78935e06b5466c326a526f704ad68bad8fcfdc3a?per_page=1 HTTP/1.1" 200 None
2024-07-10 00:34:35,154 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/78935e06b5466c326a526f704ad68bad8fcfdc3a HTTP/1.1" 200 None
2024-07-10 00:34:35,584 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/78935e06b5466c326a526f704ad68bad8fcfdc3a/status HTTP/1.1" 200 None
2024-07-10 00:34:35,585 [    scc.repo] DEBUG   - PR 417 chris-allan 'Switch result logging to DEBUG level'
2024-07-10 00:34:36,055 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/416 HTTP/1.1" 200 None
2024-07-10 00:34:36,552 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/1ab716157039f8bc7a30e9d0fd5e1d23ff9af183 HTTP/1.1" 200 None
2024-07-10 00:34:37,027 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/1ab716157039f8bc7a30e9d0fd5e1d23ff9af183/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-07-10 00:34:37,611 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/1ab716157039f8bc7a30e9d0fd5e1d23ff9af183/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-07-10 00:34:38,104 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/1ab716157039f8bc7a30e9d0fd5e1d23ff9af183 HTTP/1.1" 200 None
2024-07-10 00:34:38,532 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/1ab716157039f8bc7a30e9d0fd5e1d23ff9af183?per_page=1 HTTP/1.1" 200 None
2024-07-10 00:34:39,033 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/1ab716157039f8bc7a30e9d0fd5e1d23ff9af183 HTTP/1.1" 200 None
2024-07-10 00:34:39,468 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/1ab716157039f8bc7a30e9d0fd5e1d23ff9af183/status HTTP/1.1" 200 None
2024-07-10 00:34:39,470 [    scc.repo] DEBUG   - PR 416 sbesson 'Parse omero.logging properties under new Logging heading'
2024-07-10 00:34:39,919 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/415 HTTP/1.1" 200 None
2024-07-10 00:34:40,370 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/408 HTTP/1.1" 200 None
2024-07-10 00:34:40,825 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/408/comments HTTP/1.1" 200 None
2024-07-10 00:34:41,334 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/5b69af339bf34bd4adcf16a7f6a03fafa2921804 HTTP/1.1" 200 None
2024-07-10 00:34:41,861 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/5b69af339bf34bd4adcf16a7f6a03fafa2921804/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-07-10 00:34:42,348 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/5b69af339bf34bd4adcf16a7f6a03fafa2921804/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-07-10 00:34:42,766 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/5b69af339bf34bd4adcf16a7f6a03fafa2921804 HTTP/1.1" 200 None
2024-07-10 00:34:43,199 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/5b69af339bf34bd4adcf16a7f6a03fafa2921804?per_page=1 HTTP/1.1" 200 None
2024-07-10 00:34:43,647 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/5b69af339bf34bd4adcf16a7f6a03fafa2921804 HTTP/1.1" 200 None
2024-07-10 00:34:44,091 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/5b69af339bf34bd4adcf16a7f6a03fafa2921804/status HTTP/1.1" 200 None
2024-07-10 00:34:44,092 [    scc.repo] DEBUG   - PR 408 jburel 'remove deprecated method'
2024-07-10 00:34:44,560 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/396 HTTP/1.1" 200 None
2024-07-10 00:34:45,024 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/396/comments HTTP/1.1" 200 None
2024-07-10 00:34:45,516 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c2cf271ef27269131408acb10c7cc1ecaefb0573 HTTP/1.1" 200 None
2024-07-10 00:34:45,995 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c2cf271ef27269131408acb10c7cc1ecaefb0573/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-07-10 00:34:46,465 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c2cf271ef27269131408acb10c7cc1ecaefb0573/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-07-10 00:34:46,923 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/391 HTTP/1.1" 200 None
2024-07-10 00:34:47,428 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/20da2ca68fa40df47b5436887597e9804098f023 HTTP/1.1" 200 None
2024-07-10 00:34:47,913 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/20da2ca68fa40df47b5436887597e9804098f023/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-07-10 00:34:48,374 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/20da2ca68fa40df47b5436887597e9804098f023/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-07-10 00:34:48,942 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/20da2ca68fa40df47b5436887597e9804098f023 HTTP/1.1" 200 None
2024-07-10 00:34:49,377 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/20da2ca68fa40df47b5436887597e9804098f023?per_page=1 HTTP/1.1" 200 None
2024-07-10 00:34:49,813 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/20da2ca68fa40df47b5436887597e9804098f023 HTTP/1.1" 200 None
2024-07-10 00:34:50,254 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/20da2ca68fa40df47b5436887597e9804098f023/status HTTP/1.1" 200 None
2024-07-10 00:34:50,255 [    scc.repo] DEBUG   - PR 391 joshmoore 'Add jstack command'
2024-07-10 00:34:50,742 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/387 HTTP/1.1" 200 None
2024-07-10 00:34:50,743 [    scc.repo] DEBUG   # ... Exclude label: exclude
2024-07-10 00:34:51,198 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/337 HTTP/1.1" 200 None
2024-07-10 00:34:51,661 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/337/comments HTTP/1.1" 200 None
2024-07-10 00:34:52,204 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/0df9ec8000befec36dd85b7ff078ce66603e36a5 HTTP/1.1" 200 None
2024-07-10 00:34:52,673 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/0df9ec8000befec36dd85b7ff078ce66603e36a5/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-07-10 00:34:53,175 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/0df9ec8000befec36dd85b7ff078ce66603e36a5 HTTP/1.1" 200 None
2024-07-10 00:34:53,592 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/0df9ec8000befec36dd85b7ff078ce66603e36a5?per_page=1 HTTP/1.1" 200 2
2024-07-10 00:34:53,593 [    scc.repo] DEBUG   - PR 337 will-moore 'bulk.yml depth is passed to xargs'
2024-07-10 00:34:54,059 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/332 HTTP/1.1" 200 None
2024-07-10 00:34:54,526 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/332/comments HTTP/1.1" 200 None
2024-07-10 00:34:55,045 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c427fcd99373ad6c0c2d28d322827d0523ba7afc HTTP/1.1" 200 None
2024-07-10 00:34:55,492 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c427fcd99373ad6c0c2d28d322827d0523ba7afc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-07-10 00:34:55,973 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c427fcd99373ad6c0c2d28d322827d0523ba7afc/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-07-10 00:34:56,408 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c427fcd99373ad6c0c2d28d322827d0523ba7afc HTTP/1.1" 200 None
2024-07-10 00:34:56,844 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/c427fcd99373ad6c0c2d28d322827d0523ba7afc?per_page=1 HTTP/1.1" 200 None
2024-07-10 00:34:57,355 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c427fcd99373ad6c0c2d28d322827d0523ba7afc HTTP/1.1" 200 None
2024-07-10 00:34:57,787 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c427fcd99373ad6c0c2d28d322827d0523ba7afc/status HTTP/1.1" 200 None
2024-07-10 00:34:57,788 [    scc.repo] DEBUG   - PR 332 jburel 'Build conda'
2024-07-10 00:34:58,254 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/325 HTTP/1.1" 200 None
2024-07-10 00:34:58,717 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/325/comments HTTP/1.1" 200 None
2024-07-10 00:34:59,177 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/299 HTTP/1.1" 200 None
2024-07-10 00:34:59,648 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/299/comments HTTP/1.1" 200 None
2024-07-10 00:35:00,174 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/09ae8033d77faf0346255eb9644207e02c98709a HTTP/1.1" 200 None
2024-07-10 00:35:00,652 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/09ae8033d77faf0346255eb9644207e02c98709a/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-07-10 00:35:01,161 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/09ae8033d77faf0346255eb9644207e02c98709a HTTP/1.1" 200 None
2024-07-10 00:35:01,569 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/09ae8033d77faf0346255eb9644207e02c98709a?per_page=1 HTTP/1.1" 200 2
2024-07-10 00:35:01,570 [    scc.repo] DEBUG   - PR 299 joshmoore 'Add parents and children to omero obj'
2024-07-10 00:35:02,021 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/266 HTTP/1.1" 200 None
2024-07-10 00:35:02,548 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/df250605e81b3b5f509b4cddc3186a63d7ba364f HTTP/1.1" 200 None
2024-07-10 00:35:03,002 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/df250605e81b3b5f509b4cddc3186a63d7ba364f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-07-10 00:35:03,451 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/df250605e81b3b5f509b4cddc3186a63d7ba364f HTTP/1.1" 200 None
2024-07-10 00:35:03,868 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/df250605e81b3b5f509b4cddc3186a63d7ba364f?per_page=1 HTTP/1.1" 200 2
2024-07-10 00:35:03,868 [    scc.repo] DEBUG   - PR 266 joshmoore 'errors: use raise_error from cli plugins'
2024-07-10 00:35:04,325 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/207 HTTP/1.1" 200 None
2024-07-10 00:35:04,812 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/207/comments HTTP/1.1" 200 None
2024-07-10 00:35:05,342 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/d68e639b52d3b583d12c65164f3edcd0b813a4bb HTTP/1.1" 200 None
2024-07-10 00:35:05,803 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/d68e639b52d3b583d12c65164f3edcd0b813a4bb/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-07-10 00:35:06,257 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/d68e639b52d3b583d12c65164f3edcd0b813a4bb HTTP/1.1" 200 None
2024-07-10 00:35:06,670 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/d68e639b52d3b583d12c65164f3edcd0b813a4bb?per_page=1 HTTP/1.1" 200 2
2024-07-10 00:35:06,671 [    scc.repo] DEBUG   - PR 207 manics 'BlitzGateway.connect raise on error'
2024-07-10 00:35:07,124 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/199 HTTP/1.1" 200 None
2024-07-10 00:35:07,630 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/199/comments HTTP/1.1" 200 None
2024-07-10 00:35:08,204 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/d9df94bbff36ef1f943c9ab1995cd60831e572ec HTTP/1.1" 200 None
2024-07-10 00:35:08,636 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/d9df94bbff36ef1f943c9ab1995cd60831e572ec/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-07-10 00:35:09,076 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/d9df94bbff36ef1f943c9ab1995cd60831e572ec HTTP/1.1" 200 None
2024-07-10 00:35:09,501 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/d9df94bbff36ef1f943c9ab1995cd60831e572ec?per_page=1 HTTP/1.1" 200 2
2024-07-10 00:35:09,502 [    scc.repo] DEBUG   - PR 199 joshmoore 'user: allow setting default group'
2024-07-10 00:35:09,948 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/194 HTTP/1.1" 200 None
2024-07-10 00:35:10,396 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/194/comments HTTP/1.1" 200 None
2024-07-10 00:35:10,858 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/129 HTTP/1.1" 200 None
2024-07-10 00:35:11,344 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/129/comments HTTP/1.1" 200 None
2024-07-10 00:35:11,347 [    scc.repo] DEBUG ## Branches found:
2024-07-10 00:35:11,347 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-py
2024-07-10 00:35:11,347 [     scc.git] DEBUG Get sha1 of %s
2024-07-10 00:35:11,348 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-10 00:35:11,352 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-07-10 00:35:11,357 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-07-10 00:35:11,357 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-07-10 00:35:11,362 [     scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-07-10 00:35:11,367 [     scc.git] DEBUG Already up to date.

2024-07-10 00:35:11,368 [     scc.git] DEBUG Calling 'git fetch origin pull/199/head'
2024-07-10 00:35:12,024 [     scc.git] DEBUG From https://github.com/ome/omero-py
2024-07-10 00:35:12,025 [     scc.git] DEBUG  * branch              refs/pull/199/head -> FETCH_HEAD
2024-07-10 00:35:12,030 [     scc.git] DEBUG Calling 'git fetch origin pull/207/head'
2024-07-10 00:35:12,464 [     scc.git] DEBUG From https://github.com/ome/omero-py
2024-07-10 00:35:12,464 [     scc.git] DEBUG  * branch              refs/pull/207/head -> FETCH_HEAD
2024-07-10 00:35:12,469 [     scc.git] DEBUG Calling 'git fetch origin pull/266/head'
2024-07-10 00:35:12,846 [     scc.git] DEBUG From https://github.com/ome/omero-py
2024-07-10 00:35:12,846 [     scc.git] DEBUG  * branch              refs/pull/266/head -> FETCH_HEAD
2024-07-10 00:35:12,851 [     scc.git] DEBUG Calling 'git fetch origin pull/299/head'
2024-07-10 00:35:13,244 [     scc.git] DEBUG From https://github.com/ome/omero-py
2024-07-10 00:35:13,244 [     scc.git] DEBUG  * branch              refs/pull/299/head -> FETCH_HEAD
2024-07-10 00:35:13,249 [     scc.git] DEBUG Calling 'git fetch origin pull/332/head'
2024-07-10 00:35:13,643 [     scc.git] DEBUG From https://github.com/ome/omero-py
2024-07-10 00:35:13,644 [     scc.git] DEBUG  * branch              refs/pull/332/head -> FETCH_HEAD
2024-07-10 00:35:13,648 [     scc.git] DEBUG Calling 'git fetch origin pull/337/head'
2024-07-10 00:35:13,995 [     scc.git] DEBUG From https://github.com/ome/omero-py
2024-07-10 00:35:13,995 [     scc.git] DEBUG  * branch              refs/pull/337/head -> FETCH_HEAD
2024-07-10 00:35:14,000 [     scc.git] DEBUG Calling 'git fetch origin pull/391/head'
2024-07-10 00:35:14,352 [     scc.git] DEBUG From https://github.com/ome/omero-py
2024-07-10 00:35:14,353 [     scc.git] DEBUG  * branch              refs/pull/391/head -> FETCH_HEAD
2024-07-10 00:35:14,357 [     scc.git] DEBUG Calling 'git fetch origin pull/408/head'
2024-07-10 00:35:14,786 [     scc.git] DEBUG From https://github.com/ome/omero-py
2024-07-10 00:35:14,786 [     scc.git] DEBUG  * branch              refs/pull/408/head -> FETCH_HEAD
2024-07-10 00:35:14,791 [     scc.git] DEBUG Calling 'git fetch origin pull/416/head'
2024-07-10 00:35:15,186 [     scc.git] DEBUG From https://github.com/ome/omero-py
2024-07-10 00:35:15,186 [     scc.git] DEBUG  * branch              refs/pull/416/head -> FETCH_HEAD
2024-07-10 00:35:15,192 [     scc.git] DEBUG Calling 'git fetch origin pull/417/head'
2024-07-10 00:35:15,602 [     scc.git] DEBUG From https://github.com/ome/omero-py
2024-07-10 00:35:15,602 [     scc.git] DEBUG  * branch              refs/pull/417/head -> FETCH_HEAD
2024-07-10 00:35:15,607 [     scc.git] DEBUG Calling 'git fetch origin pull/418/head'
2024-07-10 00:35:16,029 [     scc.git] DEBUG From https://github.com/ome/omero-py
2024-07-10 00:35:16,029 [     scc.git] DEBUG  * branch              refs/pull/418/head -> FETCH_HEAD
2024-07-10 00:35:16,034 [     scc.git] DEBUG Calling 'git fetch origin pull/419/head'
2024-07-10 00:35:16,577 [     scc.git] DEBUG From https://github.com/ome/omero-py
2024-07-10 00:35:16,577 [     scc.git] DEBUG  * branch              refs/pull/419/head -> FETCH_HEAD
2024-07-10 00:35:16,580 [     scc.git] DEBUG ## Unique users: []
2024-07-10 00:35:16,580 [     scc.git] DEBUG Get sha1 of %s
2024-07-10 00:35:16,580 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-10 00:35:16,585 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...d9df94bbff36ef1f943c9ab1995cd60831e572ec'
2024-07-10 00:35:16,595 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-10 00:35:16,599 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 199 (user: allow setting default group) d9df94bbff36ef1f943c9ab1995cd60831e572ec'
2024-07-10 00:35:16,647 [     scc.git] DEBUG Auto-merging src/omero/cli.py
2024-07-10 00:35:16,647 [     scc.git] DEBUG Auto-merging src/omero/plugins/user.py
2024-07-10 00:35:16,648 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-07-10 00:35:16,652 [     scc.git] DEBUG  src/omero/cli.py          |  6 ++++++
2024-07-10 00:35:16,652 [     scc.git] DEBUG  src/omero/plugins/user.py | 36 +++++++++++++++++++++++++++++++++---
2024-07-10 00:35:16,652 [     scc.git] DEBUG  2 files changed, 39 insertions(+), 3 deletions(-)
2024-07-10 00:35:16,825 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-10 00:35:16,826 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...d68e639b52d3b583d12c65164f3edcd0b813a4bb'
2024-07-10 00:35:16,838 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-10 00:35:16,842 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 207 (BlitzGateway.connect raise on error) d68e639b52d3b583d12c65164f3edcd0b813a4bb'
2024-07-10 00:35:16,951 [     scc.git] DEBUG Auto-merging src/omero/gateway/__init__.py
2024-07-10 00:35:16,951 [     scc.git] DEBUG Auto-merging test/unit/test_gateway.py
2024-07-10 00:35:16,952 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-07-10 00:35:16,960 [     scc.git] DEBUG  src/omero/gateway/__init__.py | 19 +++++++++++++------
2024-07-10 00:35:16,960 [     scc.git] DEBUG  test/unit/test_gateway.py     | 16 ++++++++++++++++
2024-07-10 00:35:16,960 [     scc.git] DEBUG  2 files changed, 29 insertions(+), 6 deletions(-)
2024-07-10 00:35:17,248 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-10 00:35:17,249 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...df250605e81b3b5f509b4cddc3186a63d7ba364f'
2024-07-10 00:35:17,261 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-10 00:35:17,265 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 266 (errors: use raise_error from cli plugins) df250605e81b3b5f509b4cddc3186a63d7ba364f'
2024-07-10 00:35:17,339 [     scc.git] DEBUG Auto-merging src/omero/plugins/search.py
2024-07-10 00:35:17,341 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-07-10 00:35:17,344 [     scc.git] DEBUG  src/omero/plugins/search.py | 13 +++++++++----
2024-07-10 00:35:17,344 [     scc.git] DEBUG  1 file changed, 9 insertions(+), 4 deletions(-)
2024-07-10 00:35:17,666 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-10 00:35:17,667 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...09ae8033d77faf0346255eb9644207e02c98709a'
2024-07-10 00:35:17,679 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-10 00:35:17,683 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 299 (Add parents and children to omero obj) 09ae8033d77faf0346255eb9644207e02c98709a'
2024-07-10 00:35:17,774 [     scc.git] DEBUG Auto-merging src/omero/plugins/obj.py
2024-07-10 00:35:17,775 [     scc.git] DEBUG Auto-merging test/unit/clitest/test_obj.py
2024-07-10 00:35:17,775 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-07-10 00:35:17,779 [     scc.git] DEBUG  src/omero/plugins/obj.py      | 69 ++++++++++++++++++++++++++++++++++++++++++-
2024-07-10 00:35:17,780 [     scc.git] DEBUG  test/unit/clitest/test_obj.py |  2 +-
2024-07-10 00:35:17,780 [     scc.git] DEBUG  2 files changed, 69 insertions(+), 2 deletions(-)
2024-07-10 00:35:18,070 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-10 00:35:18,071 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...c427fcd99373ad6c0c2d28d322827d0523ba7afc'
2024-07-10 00:35:18,084 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-10 00:35:18,088 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 332 (Build conda) c427fcd99373ad6c0c2d28d322827d0523ba7afc'
2024-07-10 00:35:18,121 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-07-10 00:35:18,124 [     scc.git] DEBUG  .github/workflows/install.yml | 37 +++++++++++++++++++++++++++++++++++++
2024-07-10 00:35:18,124 [     scc.git] DEBUG  connect.py                    | 11 +++++++++++
2024-07-10 00:35:18,124 [     scc.git] DEBUG  2 files changed, 48 insertions(+)
2024-07-10 00:35:18,124 [     scc.git] DEBUG  create mode 100644 .github/workflows/install.yml
2024-07-10 00:35:18,124 [     scc.git] DEBUG  create mode 100644 connect.py
2024-07-10 00:35:18,482 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-10 00:35:18,483 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...0df9ec8000befec36dd85b7ff078ce66603e36a5'
2024-07-10 00:35:18,494 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-10 00:35:18,498 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 337 (bulk.yml depth is passed to xargs) 0df9ec8000befec36dd85b7ff078ce66603e36a5'
2024-07-10 00:35:18,563 [     scc.git] DEBUG Auto-merging src/omero/plugins/import.py
2024-07-10 00:35:18,564 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-07-10 00:35:18,567 [     scc.git] DEBUG  src/omero/plugins/import.py | 2 ++
2024-07-10 00:35:18,567 [     scc.git] DEBUG  1 file changed, 2 insertions(+)
2024-07-10 00:35:18,892 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-10 00:35:18,893 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...20da2ca68fa40df47b5436887597e9804098f023'
2024-07-10 00:35:18,905 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-10 00:35:18,909 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 391 (Add jstack command) 20da2ca68fa40df47b5436887597e9804098f023'
2024-07-10 00:35:18,994 [     scc.git] DEBUG Auto-merging src/omero/plugins/admin.py
2024-07-10 00:35:18,995 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-07-10 00:35:18,999 [     scc.git] DEBUG  src/omero/plugins/admin.py | 61 ++++++++++++++++++++++++++++++++++++++++++++--
2024-07-10 00:35:18,999 [     scc.git] DEBUG  1 file changed, 59 insertions(+), 2 deletions(-)
2024-07-10 00:35:19,300 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-10 00:35:19,301 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...5b69af339bf34bd4adcf16a7f6a03fafa2921804'
2024-07-10 00:35:19,313 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-10 00:35:19,317 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 408 (remove deprecated method) 5b69af339bf34bd4adcf16a7f6a03fafa2921804'
2024-07-10 00:35:19,403 [     scc.git] DEBUG Auto-merging src/omero/gateway/__init__.py
2024-07-10 00:35:19,403 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-07-10 00:35:19,412 [     scc.git] DEBUG  src/omero/gateway/__init__.py | 36 ------------------------------------
2024-07-10 00:35:19,413 [     scc.git] DEBUG  1 file changed, 36 deletions(-)
2024-07-10 00:35:19,717 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-10 00:35:19,718 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...1ab716157039f8bc7a30e9d0fd5e1d23ff9af183'
2024-07-10 00:35:19,731 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-10 00:35:19,736 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 416 (Parse omero.logging properties under new Logging heading) 1ab716157039f8bc7a30e9d0fd5e1d23ff9af183'
2024-07-10 00:35:19,800 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-07-10 00:35:19,804 [     scc.git] DEBUG  src/omero/install/config_parser.py | 2 ++
2024-07-10 00:35:19,804 [     scc.git] DEBUG  1 file changed, 2 insertions(+)
2024-07-10 00:35:20,144 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-10 00:35:20,145 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...78935e06b5466c326a526f704ad68bad8fcfdc3a'
2024-07-10 00:35:20,157 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-10 00:35:20,162 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 417 (Switch result logging to DEBUG level) 78935e06b5466c326a526f704ad68bad8fcfdc3a'
2024-07-10 00:35:20,226 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-07-10 00:35:20,229 [     scc.git] DEBUG  src/omero/util/decorators.py | 5 ++++-
2024-07-10 00:35:20,229 [     scc.git] DEBUG  1 file changed, 4 insertions(+), 1 deletion(-)
2024-07-10 00:35:20,550 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-10 00:35:20,551 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...8636894b410e1ed99ad9a9819673808c4589fe36'
2024-07-10 00:35:20,563 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-10 00:35:20,568 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 418 (Allow a caller to ignore row numbers) 8636894b410e1ed99ad9a9819673808c4589fe36'
2024-07-10 00:35:20,589 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-07-10 00:35:20,592 [     scc.git] DEBUG  src/omero/hdfstorageV2.py | 18 +++++++++++++-----
2024-07-10 00:35:20,592 [     scc.git] DEBUG  1 file changed, 13 insertions(+), 5 deletions(-)
2024-07-10 00:35:20,958 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-10 00:35:20,959 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...c7f2c9f7a4aa872c310b46e1ab27474c1058f4df'
2024-07-10 00:35:20,971 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-10 00:35:20,975 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 419 (admin rewrite: make OMERO.tables module configurable) c7f2c9f7a4aa872c310b46e1ab27474c1058f4df'
2024-07-10 00:35:21,002 [     scc.git] DEBUG Auto-merging src/omero/plugins/admin.py
2024-07-10 00:35:21,003 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-07-10 00:35:21,008 [     scc.git] DEBUG  src/omero/plugins/admin.py | 4 +++-
2024-07-10 00:35:21,008 [     scc.git] DEBUG  1 file changed, 3 insertions(+), 1 deletion(-)
2024-07-10 00:35:21,367 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-10 00:35:21,369 [     scc.git] DEBUG Calling 'git submodule update'
2024-07-10 00:35:21,416 [     scc.git] DEBUG Get sha1 of %s
2024-07-10 00:35:21,417 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-10 00:35:21,424 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-07-10 00:35:21,467 [     scc.git] DEBUG Calling 'git status --porcelain'
2024-07-10 00:35:21,474 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7fb9b1652cd0> has no local changes
2024-07-10 00:35:21,474 [     scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only

Repository: ome/omero-py
Excluded PRs:
  - PR 415 barrettMCW 'Fix reconnection issue' (user: barrettMCW)
  - PR 396 joshmoore 'Config property for passing environment variables (see #395)' (status: failure)
  - PR 387 will-moore 'Numpy pixels type' (label: exclude)
  - PR 325 JulianHn 'Addding support for other encodings than utf-8 in DownloadingOriginalFileProvider' (user: JulianHn)
  - PR 194 manics 'Support Python 3 asyncio concurrency' (stage: draft)
  - PR 129 dominikl 'Add option to create new ThumbnailStore connection' (exclude comment)
Already up to date.

Merged PRs:
  - PR 199 joshmoore 'user: allow setting default group'
  - PR 207 manics 'BlitzGateway.connect raise on error'
  - PR 266 joshmoore 'errors: use raise_error from cli plugins'
  - PR 299 joshmoore 'Add parents and children to omero obj'
  - PR 332 jburel 'Build conda'
  - PR 337 will-moore 'bulk.yml depth is passed to xargs'
  - PR 391 joshmoore 'Add jstack command'
  - PR 408 jburel 'remove deprecated method'
  - PR 416 sbesson 'Parse omero.logging properties under new Logging heading'
  - PR 417 chris-allan 'Switch result logging to DEBUG level'
  - PR 418 chris-allan 'Allow a caller to ignore row numbers'
  - PR 419 sbesson 'admin rewrite: make OMERO.tables module configurable'

Generated by OMERO-python-superbuild-push#111 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/111/)'
2024-07-10 00:35:21,484 [     scc.git] DEBUG [detached HEAD fb2852ad] merge master -Dorg -Ssuccess-only
2024-07-10 00:35:21,485 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-07-10 00:35:21,485 [     scc.git] INFO  Overriding base-branch from master to develop
2024-07-10 00:35:21,485 [    scc.repo] DEBUG ## PRs found:
2024-07-10 00:35:22,022 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2024-07-10 00:35:22,485 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/216 HTTP/1.1" 200 None
2024-07-10 00:35:23,052 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/216/comments HTTP/1.1" 200 None
2024-07-10 00:35:23,510 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/206 HTTP/1.1" 200 None
2024-07-10 00:35:23,972 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/206/comments HTTP/1.1" 200 None
2024-07-10 00:35:24,436 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202 HTTP/1.1" 200 None
2024-07-10 00:35:24,887 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202/comments HTTP/1.1" 200 None
2024-07-10 00:35:25,392 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2024-07-10 00:35:25,821 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-07-10 00:35:26,412 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2024-07-10 00:35:26,830 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/1fd6030669613cdb8879cfe6395db8c820fdcf19?per_page=1 HTTP/1.1" 200 2
2024-07-10 00:35:26,830 [    scc.repo] DEBUG   - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2024-07-10 00:35:27,293 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None
2024-07-10 00:35:27,777 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None
2024-07-10 00:35:28,232 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103 HTTP/1.1" 200 None
2024-07-10 00:35:28,765 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103/comments HTTP/1.1" 200 None
2024-07-10 00:35:28,767 [    scc.repo] DEBUG ## Branches found:
2024-07-10 00:35:28,767 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-scripts
2024-07-10 00:35:28,767 [     scc.git] DEBUG Get sha1 of %s
2024-07-10 00:35:28,767 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-10 00:35:28,772 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2024-07-10 00:35:28,777 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-07-10 00:35:28,777 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2024-07-10 00:35:28,782 [     scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2024-07-10 00:35:28,787 [     scc.git] DEBUG Already up to date.

2024-07-10 00:35:28,787 [     scc.git] DEBUG Calling 'git fetch origin pull/202/head'
2024-07-10 00:35:29,242 [     scc.git] DEBUG From https://github.com/ome/omero-scripts
2024-07-10 00:35:29,242 [     scc.git] DEBUG  * branch            refs/pull/202/head -> FETCH_HEAD
2024-07-10 00:35:29,247 [     scc.git] DEBUG ## Unique users: []
2024-07-10 00:35:29,247 [     scc.git] DEBUG Get sha1 of %s
2024-07-10 00:35:29,247 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-10 00:35:29,252 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...1fd6030669613cdb8879cfe6395db8c820fdcf19'
2024-07-10 00:35:29,258 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-10 00:35:29,263 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 202 (Add Plate support to KeyVal_to_csv.py) 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2024-07-10 00:35:29,321 [     scc.git] DEBUG Auto-merging omero/annotation_scripts/KeyVal_to_csv.py
2024-07-10 00:35:29,321 [     scc.git] DEBUG CONFLICT (content): Merge conflict in omero/annotation_scripts/KeyVal_to_csv.py
2024-07-10 00:35:29,321 [     scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2024-07-10 00:35:29,322 [     scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2024-07-10 00:35:29,327 [     scc.git] DEBUG Calling 'git reset --hard c20d2734b711c659cecea83db6e2ebd7b7013636'
2024-07-10 00:35:29,333 [     scc.git] DEBUG HEAD is now at c20d273 Merge pull request #221 from imcf/fix-typechecking
2024-07-10 00:35:29,485 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-10 00:35:29,486 [     scc.git] DEBUG Calling 'git merge-base c20d2734b711c659cecea83db6e2ebd7b7013636 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2024-07-10 00:35:29,492 [     scc.git] DEBUG Calling 'git diff --name-only a90f59802f6752ad74badec5c0c1d6b0c9c43b15..c20d2734b711c659cecea83db6e2ebd7b7013636'
2024-07-10 00:35:29,497 [     scc.git] INFO    - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Conflicting PR. Removed from build [OMERO-python-superbuild-push#111](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/111/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/111/consoleText) for more details.
Possible conflicts:
  - Upstream changes
    - omero/annotation_scripts/KeyVal_to_csv.py

--conflicts

2024-07-10 00:35:29,502 [  scc.config] DEBUG Found github.token
2024-07-10 00:35:29,502 [     scc.git] DEBUG Not adding comment to issue #202, already --conflicts.
2024-07-10 00:35:29,503 [     scc.git] DEBUG Calling 'git submodule update'
2024-07-10 00:35:29,544 [     scc.git] DEBUG Get sha1 of %s
2024-07-10 00:35:29,544 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-10 00:35:29,548 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-07-10 00:35:29,583 [     scc.git] DEBUG Calling 'git status --porcelain'
2024-07-10 00:35:29,589 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7fb9b166bbb0> has no local changes
2024-07-10 00:35:29,589 [     scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only

Repository: ome/omero-scripts
Excluded PRs:
  - PR 216 Tom-TBT 'Key-value pair scripts enhancement' (user: Tom-TBT)
  - PR 206 Rdornier 'Adding a script that saves data owner as key-value pair' (user: Rdornier)
  - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
  - PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Already up to date.

Conflicting PRs (not included):
  - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'

Generated by OMERO-python-superbuild-push#111 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/111/)'
2024-07-10 00:35:29,597 [     scc.git] DEBUG [detached HEAD a15d5e5] merge master -Dorg -Ssuccess-only
2024-07-10 00:35:29,597 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-07-10 00:35:29,597 [    scc.repo] DEBUG ## PRs found:
2024-07-10 00:35:30,055 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/pulls HTTP/1.1" 200 None
2024-07-10 00:35:30,520 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/564 HTTP/1.1" 200 None
2024-07-10 00:35:30,993 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/564/comments HTTP/1.1" 200 None
2024-07-10 00:35:31,504 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/091e5fc2d35212271ac71fd66b42c611299d6fde HTTP/1.1" 200 None
2024-07-10 00:35:31,976 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/091e5fc2d35212271ac71fd66b42c611299d6fde/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-07-10 00:35:32,460 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/091e5fc2d35212271ac71fd66b42c611299d6fde/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-07-10 00:35:32,896 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/091e5fc2d35212271ac71fd66b42c611299d6fde HTTP/1.1" 200 None
2024-07-10 00:35:33,326 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/091e5fc2d35212271ac71fd66b42c611299d6fde?per_page=1 HTTP/1.1" 200 None
2024-07-10 00:35:33,841 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/091e5fc2d35212271ac71fd66b42c611299d6fde HTTP/1.1" 200 None
2024-07-10 00:35:34,294 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/091e5fc2d35212271ac71fd66b42c611299d6fde/status HTTP/1.1" 200 None
2024-07-10 00:35:34,295 [    scc.repo] DEBUG   - PR 564 knabar 'New table API endpoints for lower level table access'
2024-07-10 00:35:34,763 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/563 HTTP/1.1" 200 None
2024-07-10 00:35:35,229 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/563/comments HTTP/1.1" 200 None
2024-07-10 00:35:35,740 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/af88a0cd2aa7d15d9b0dca1ce369060284551de7 HTTP/1.1" 200 None
2024-07-10 00:35:36,206 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/af88a0cd2aa7d15d9b0dca1ce369060284551de7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-07-10 00:35:36,671 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/af88a0cd2aa7d15d9b0dca1ce369060284551de7/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-07-10 00:35:37,175 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/af88a0cd2aa7d15d9b0dca1ce369060284551de7 HTTP/1.1" 200 None
2024-07-10 00:35:37,601 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/af88a0cd2aa7d15d9b0dca1ce369060284551de7?per_page=1 HTTP/1.1" 200 None
2024-07-10 00:35:38,040 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/af88a0cd2aa7d15d9b0dca1ce369060284551de7 HTTP/1.1" 200 None
2024-07-10 00:35:38,476 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/af88a0cd2aa7d15d9b0dca1ce369060284551de7/status HTTP/1.1" 200 None
2024-07-10 00:35:38,477 [    scc.repo] DEBUG   - PR 563 chris-allan 'Batch by MAX_TABLE_DOWNLOAD_ROWS'
2024-07-10 00:35:38,948 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/562 HTTP/1.1" 200 None
2024-07-10 00:35:39,424 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/560 HTTP/1.1" 200 None
2024-07-10 00:35:39,884 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/560/comments HTTP/1.1" 200 None
2024-07-10 00:35:40,383 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/f92a4e2764982ace46474a82af4ad25bee9d8823 HTTP/1.1" 200 None
2024-07-10 00:35:40,845 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/f92a4e2764982ace46474a82af4ad25bee9d8823/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-07-10 00:35:41,314 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/f92a4e2764982ace46474a82af4ad25bee9d8823/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-07-10 00:35:41,822 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/f92a4e2764982ace46474a82af4ad25bee9d8823 HTTP/1.1" 200 None
2024-07-10 00:35:42,256 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/f92a4e2764982ace46474a82af4ad25bee9d8823?per_page=1 HTTP/1.1" 200 None
2024-07-10 00:35:42,694 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/f92a4e2764982ace46474a82af4ad25bee9d8823 HTTP/1.1" 200 None
2024-07-10 00:35:43,129 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/f92a4e2764982ace46474a82af4ad25bee9d8823/status HTTP/1.1" 200 None
2024-07-10 00:35:43,131 [    scc.repo] DEBUG   - PR 560 will-moore 'linkify supports urls that include $ character'
2024-07-10 00:35:43,587 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/558 HTTP/1.1" 200 None
2024-07-10 00:35:44,083 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/575f7bbc72aad997963937297f08156ca6f7dd5e HTTP/1.1" 200 None
2024-07-10 00:35:44,541 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/575f7bbc72aad997963937297f08156ca6f7dd5e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-07-10 00:35:45,058 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/575f7bbc72aad997963937297f08156ca6f7dd5e/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-07-10 00:35:45,541 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/575f7bbc72aad997963937297f08156ca6f7dd5e HTTP/1.1" 200 None
2024-07-10 00:35:45,976 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/575f7bbc72aad997963937297f08156ca6f7dd5e?per_page=1 HTTP/1.1" 200 None
2024-07-10 00:35:46,427 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/575f7bbc72aad997963937297f08156ca6f7dd5e HTTP/1.1" 200 None
2024-07-10 00:35:46,858 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/575f7bbc72aad997963937297f08156ca6f7dd5e/status HTTP/1.1" 200 None
2024-07-10 00:35:46,860 [    scc.repo] DEBUG   - PR 558 jburel 'Update readme'
2024-07-10 00:35:47,310 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/555 HTTP/1.1" 200 None
2024-07-10 00:35:47,817 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/555/comments HTTP/1.1" 200 None
2024-07-10 00:35:48,318 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/97e479b717e34179eceea2507d3e69a04b2fec1e HTTP/1.1" 200 None
2024-07-10 00:35:48,806 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/97e479b717e34179eceea2507d3e69a04b2fec1e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-07-10 00:35:49,312 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/97e479b717e34179eceea2507d3e69a04b2fec1e/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-07-10 00:35:49,747 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/97e479b717e34179eceea2507d3e69a04b2fec1e HTTP/1.1" 200 None
2024-07-10 00:35:50,181 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/97e479b717e34179eceea2507d3e69a04b2fec1e?per_page=1 HTTP/1.1" 200 None
2024-07-10 00:35:50,617 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/97e479b717e34179eceea2507d3e69a04b2fec1e HTTP/1.1" 200 None
2024-07-10 00:35:51,054 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/97e479b717e34179eceea2507d3e69a04b2fec1e/status HTTP/1.1" 200 None
2024-07-10 00:35:51,055 [    scc.repo] DEBUG   - PR 555 chris-allan 'Archive status'
2024-07-10 00:35:51,526 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/554 HTTP/1.1" 200 None
2024-07-10 00:35:51,972 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/554/comments HTTP/1.1" 200 None
2024-07-10 00:35:52,447 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/79c23056136bc929e4ebd57d24600780c92921c5 HTTP/1.1" 200 None
2024-07-10 00:35:52,899 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/79c23056136bc929e4ebd57d24600780c92921c5/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-07-10 00:35:53,368 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/79c23056136bc929e4ebd57d24600780c92921c5/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-07-10 00:35:53,860 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/79c23056136bc929e4ebd57d24600780c92921c5 HTTP/1.1" 200 None
2024-07-10 00:35:54,306 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/79c23056136bc929e4ebd57d24600780c92921c5?per_page=1 HTTP/1.1" 200 None
2024-07-10 00:35:54,783 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/79c23056136bc929e4ebd57d24600780c92921c5 HTTP/1.1" 200 None
2024-07-10 00:35:55,203 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/79c23056136bc929e4ebd57d24600780c92921c5/status HTTP/1.1" 200 None
2024-07-10 00:35:55,204 [    scc.repo] DEBUG   - PR 554 chris-allan 'Optimize obj_id_bitmask by using its own query'
2024-07-10 00:35:55,651 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/535 HTTP/1.1" 200 None
2024-07-10 00:35:56,158 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/535/comments HTTP/1.1" 200 None
2024-07-10 00:35:56,635 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/534 HTTP/1.1" 200 None
2024-07-10 00:35:57,122 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/534/comments HTTP/1.1" 200 None
2024-07-10 00:35:57,662 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/d328a0cbb5b49cd63929a8a6c6cf7a89a925d005 HTTP/1.1" 200 None
2024-07-10 00:35:58,119 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/d328a0cbb5b49cd63929a8a6c6cf7a89a925d005/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-07-10 00:35:58,584 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/d328a0cbb5b49cd63929a8a6c6cf7a89a925d005/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-07-10 00:35:59,034 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/d328a0cbb5b49cd63929a8a6c6cf7a89a925d005 HTTP/1.1" 200 None
2024-07-10 00:35:59,521 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/d328a0cbb5b49cd63929a8a6c6cf7a89a925d005?per_page=1 HTTP/1.1" 200 None
2024-07-10 00:36:00,011 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/d328a0cbb5b49cd63929a8a6c6cf7a89a925d005 HTTP/1.1" 200 None
2024-07-10 00:36:00,447 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/d328a0cbb5b49cd63929a8a6c6cf7a89a925d005/status HTTP/1.1" 200 None
2024-07-10 00:36:00,448 [    scc.repo] DEBUG   - PR 534 will-moore 'get strings from omero.cmd.ERR and omero.CmdError correctly'
2024-07-10 00:36:00,923 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/527 HTTP/1.1" 200 None
2024-07-10 00:36:01,394 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/527/comments HTTP/1.1" 200 None
2024-07-10 00:36:01,911 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/5565fa5d8fdefd1a406a9951f80779817ea35767 HTTP/1.1" 200 None
2024-07-10 00:36:02,450 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/5565fa5d8fdefd1a406a9951f80779817ea35767/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-07-10 00:36:02,910 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/5565fa5d8fdefd1a406a9951f80779817ea35767/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-07-10 00:36:03,409 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/5565fa5d8fdefd1a406a9951f80779817ea35767 HTTP/1.1" 200 None
2024-07-10 00:36:03,833 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/5565fa5d8fdefd1a406a9951f80779817ea35767?per_page=1 HTTP/1.1" 200 None
2024-07-10 00:36:04,334 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/5565fa5d8fdefd1a406a9951f80779817ea35767 HTTP/1.1" 200 None
2024-07-10 00:36:04,771 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/5565fa5d8fdefd1a406a9951f80779817ea35767/status HTTP/1.1" 200 None
2024-07-10 00:36:04,772 [    scc.repo] DEBUG   - PR 527 will-moore 'Add some initial CSP settings to test'
2024-07-10 00:36:05,245 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/168 HTTP/1.1" 200 None
2024-07-10 00:36:05,748 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/168/comments HTTP/1.1" 200 None
2024-07-10 00:36:06,236 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06b0073db19eeccb9698860f75639084ad1b1200 HTTP/1.1" 200 None
2024-07-10 00:36:06,689 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06b0073db19eeccb9698860f75639084ad1b1200/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-07-10 00:36:07,246 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06b0073db19eeccb9698860f75639084ad1b1200/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-07-10 00:36:07,249 [    scc.repo] DEBUG ## Branches found:
2024-07-10 00:36:07,249 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-web
2024-07-10 00:36:07,249 [     scc.git] DEBUG Get sha1 of %s
2024-07-10 00:36:07,249 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-10 00:36:07,254 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-07-10 00:36:07,258 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-07-10 00:36:07,259 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-07-10 00:36:07,276 [     scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-07-10 00:36:07,281 [     scc.git] DEBUG Already up to date.

2024-07-10 00:36:07,281 [     scc.git] DEBUG Calling 'git fetch origin pull/527/head'
2024-07-10 00:36:08,157 [     scc.git] DEBUG From https://github.com/ome/omero-web
2024-07-10 00:36:08,157 [     scc.git] DEBUG  * branch                refs/pull/527/head -> FETCH_HEAD
2024-07-10 00:36:08,162 [     scc.git] DEBUG Calling 'git fetch origin pull/534/head'
2024-07-10 00:36:08,605 [     scc.git] DEBUG From https://github.com/ome/omero-web
2024-07-10 00:36:08,605 [     scc.git] DEBUG  * branch                refs/pull/534/head -> FETCH_HEAD
2024-07-10 00:36:08,610 [     scc.git] DEBUG Calling 'git fetch origin pull/554/head'
2024-07-10 00:36:09,629 [     scc.git] DEBUG From https://github.com/ome/omero-web
2024-07-10 00:36:09,630 [     scc.git] DEBUG  * branch                refs/pull/554/head -> FETCH_HEAD
2024-07-10 00:36:09,632 [     scc.git] DEBUG Calling 'git fetch origin pull/555/head'
2024-07-10 00:36:10,396 [     scc.git] DEBUG From https://github.com/ome/omero-web
2024-07-10 00:36:10,397 [     scc.git] DEBUG  * branch                refs/pull/555/head -> FETCH_HEAD
2024-07-10 00:36:10,402 [     scc.git] DEBUG Calling 'git fetch origin pull/558/head'
2024-07-10 00:36:10,829 [     scc.git] DEBUG From https://github.com/ome/omero-web
2024-07-10 00:36:10,829 [     scc.git] DEBUG  * branch                refs/pull/558/head -> FETCH_HEAD
2024-07-10 00:36:10,834 [     scc.git] DEBUG Calling 'git fetch origin pull/560/head'
2024-07-10 00:36:11,217 [     scc.git] DEBUG From https://github.com/ome/omero-web
2024-07-10 00:36:11,217 [     scc.git] DEBUG  * branch                refs/pull/560/head -> FETCH_HEAD
2024-07-10 00:36:11,221 [     scc.git] DEBUG Calling 'git fetch origin pull/563/head'
2024-07-10 00:36:11,632 [     scc.git] DEBUG From https://github.com/ome/omero-web
2024-07-10 00:36:11,632 [     scc.git] DEBUG  * branch                refs/pull/563/head -> FETCH_HEAD
2024-07-10 00:36:11,637 [     scc.git] DEBUG Calling 'git fetch origin pull/564/head'
2024-07-10 00:36:11,997 [     scc.git] DEBUG From https://github.com/ome/omero-web
2024-07-10 00:36:11,997 [     scc.git] DEBUG  * branch                refs/pull/564/head -> FETCH_HEAD
2024-07-10 00:36:12,002 [     scc.git] DEBUG ## Unique users: []
2024-07-10 00:36:12,002 [     scc.git] DEBUG Get sha1 of %s
2024-07-10 00:36:12,002 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-10 00:36:12,007 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...5565fa5d8fdefd1a406a9951f80779817ea35767'
2024-07-10 00:36:12,012 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-10 00:36:12,016 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 527 (Add some initial CSP settings to test) 5565fa5d8fdefd1a406a9951f80779817ea35767'
2024-07-10 00:36:12,087 [     scc.git] DEBUG Auto-merging omeroweb/settings.py
2024-07-10 00:36:12,087 [     scc.git] DEBUG Auto-merging setup.py
2024-07-10 00:36:12,088 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-07-10 00:36:12,092 [     scc.git] DEBUG  omeroweb/settings.py | 42 +++++++++++++++++++++++++++++++++++++++++-
2024-07-10 00:36:12,092 [     scc.git] DEBUG  setup.py             |  1 +
2024-07-10 00:36:12,092 [     scc.git] DEBUG  2 files changed, 42 insertions(+), 1 deletion(-)
2024-07-10 00:36:12,279 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-10 00:36:12,280 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...d328a0cbb5b49cd63929a8a6c6cf7a89a925d005'
2024-07-10 00:36:12,287 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-10 00:36:12,291 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 534 (get strings from omero.cmd.ERR and omero.CmdError correctly) d328a0cbb5b49cd63929a8a6c6cf7a89a925d005'
2024-07-10 00:36:12,360 [     scc.git] DEBUG Auto-merging omeroweb/webclient/webclient_gateway.py
2024-07-10 00:36:12,360 [     scc.git] DEBUG Auto-merging omeroweb/webgateway/marshal.py
2024-07-10 00:36:12,361 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-07-10 00:36:12,364 [     scc.git] DEBUG  omeroweb/webclient/webclient_gateway.py | 2 +-
2024-07-10 00:36:12,365 [     scc.git] DEBUG  omeroweb/webgateway/marshal.py          | 4 ++--
2024-07-10 00:36:12,365 [     scc.git] DEBUG  2 files changed, 3 insertions(+), 3 deletions(-)
2024-07-10 00:36:12,699 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-10 00:36:12,700 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...79c23056136bc929e4ebd57d24600780c92921c5'
2024-07-10 00:36:12,707 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-10 00:36:12,711 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 554 (Optimize obj_id_bitmask by using its own query) 79c23056136bc929e4ebd57d24600780c92921c5'
2024-07-10 00:36:12,732 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-07-10 00:36:12,737 [     scc.git] DEBUG  omeroweb/webgateway/views.py | 77 ++++++++++++++++++++++++++------------------
2024-07-10 00:36:12,737 [     scc.git] DEBUG  test/unit/test_webgateway.py |  9 ++++--
2024-07-10 00:36:12,737 [     scc.git] DEBUG  2 files changed, 51 insertions(+), 35 deletions(-)
2024-07-10 00:36:13,111 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-10 00:36:13,112 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...97e479b717e34179eceea2507d3e69a04b2fec1e'
2024-07-10 00:36:13,119 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-10 00:36:13,123 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 555 (Archive status) 97e479b717e34179eceea2507d3e69a04b2fec1e'
2024-07-10 00:36:13,175 [     scc.git] DEBUG Auto-merging omeroweb/webgateway/marshal.py
2024-07-10 00:36:13,177 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-07-10 00:36:13,181 [     scc.git] DEBUG  omeroweb/webclient/static/webclient/javascript/ome.tree.js     |  3 +++
2024-07-10 00:36:13,182 [     scc.git] DEBUG  .../webclient/annotations/includes/core_metadata.html          |  6 ++++++
2024-07-10 00:36:13,182 [     scc.git] DEBUG  omeroweb/webclient/tree.py                                     | 10 ++++++++--
2024-07-10 00:36:13,182 [     scc.git] DEBUG  omeroweb/webgateway/marshal.py                                 |  1 +
2024-07-10 00:36:13,182 [     scc.git] DEBUG  4 files changed, 18 insertions(+), 2 deletions(-)
2024-07-10 00:36:13,531 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-10 00:36:13,532 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...575f7bbc72aad997963937297f08156ca6f7dd5e'
2024-07-10 00:36:13,540 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-10 00:36:13,544 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 558 (Update readme) 575f7bbc72aad997963937297f08156ca6f7dd5e'
2024-07-10 00:36:13,561 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-07-10 00:36:13,564 [     scc.git] DEBUG  README.rst | 42 +++++++++++++++++++++---------------------
2024-07-10 00:36:13,564 [     scc.git] DEBUG  1 file changed, 21 insertions(+), 21 deletions(-)
2024-07-10 00:36:13,953 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-10 00:36:13,954 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...f92a4e2764982ace46474a82af4ad25bee9d8823'
2024-07-10 00:36:13,962 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-10 00:36:13,966 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 560 (linkify supports urls that include $ character) f92a4e2764982ace46474a82af4ad25bee9d8823'
2024-07-10 00:36:13,985 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-07-10 00:36:13,988 [     scc.git] DEBUG  omeroweb/webclient/static/webclient/javascript/ome.webclient.actions.js | 2 +-
2024-07-10 00:36:13,988 [     scc.git] DEBUG  1 file changed, 1 insertion(+), 1 deletion(-)
2024-07-10 00:36:14,380 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-10 00:36:14,381 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...af88a0cd2aa7d15d9b0dca1ce369060284551de7'
2024-07-10 00:36:14,388 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-10 00:36:14,392 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 563 (Batch by MAX_TABLE_DOWNLOAD_ROWS) af88a0cd2aa7d15d9b0dca1ce369060284551de7'
2024-07-10 00:36:14,431 [     scc.git] DEBUG Auto-merging omeroweb/webgateway/views.py
2024-07-10 00:36:14,432 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-07-10 00:36:14,437 [     scc.git] DEBUG  omeroweb/webgateway/views.py | 2 +-
2024-07-10 00:36:14,437 [     scc.git] DEBUG  1 file changed, 1 insertion(+), 1 deletion(-)
2024-07-10 00:36:14,789 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-10 00:36:14,790 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...091e5fc2d35212271ac71fd66b42c611299d6fde'
2024-07-10 00:36:14,797 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-10 00:36:14,801 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 564 (New table API endpoints for lower level table access) 091e5fc2d35212271ac71fd66b42c611299d6fde'
2024-07-10 00:36:14,828 [     scc.git] DEBUG Auto-merging omeroweb/settings.py
2024-07-10 00:36:14,828 [     scc.git] DEBUG Auto-merging omeroweb/webgateway/views.py
2024-07-10 00:36:14,829 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2024-07-10 00:36:14,834 [     scc.git] DEBUG  omeroweb/settings.py         |   7 ++
2024-07-10 00:36:14,834 [     scc.git] DEBUG  omeroweb/webgateway/urls.py  |  29 +++++++
2024-07-10 00:36:14,834 [     scc.git] DEBUG  omeroweb/webgateway/views.py | 175 ++++++++++++++++++++++++++++++++++++++++++-
2024-07-10 00:36:14,834 [     scc.git] DEBUG  3 files changed, 210 insertions(+), 1 deletion(-)
2024-07-10 00:36:15,192 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-10 00:36:15,194 [     scc.git] DEBUG Calling 'git submodule update'
2024-07-10 00:36:15,232 [     scc.git] DEBUG Get sha1 of %s
2024-07-10 00:36:15,233 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-07-10 00:36:15,238 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-07-10 00:36:15,275 [     scc.git] DEBUG Calling 'git status --porcelain'
2024-07-10 00:36:15,284 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7fb9b05bb4f0> has no local changes
2024-07-10 00:36:15,285 [     scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only

Repository: ome/omero-web
Excluded PRs:
  - PR 562 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
  - PR 535 will-moore 'Initial working browser history' (stage: draft)
  - PR 168 stick 'Changes to nginx @maintenance handler' (status: failure)
Already up to date.

Merged PRs:
  - PR 527 will-moore 'Add some initial CSP settings to test'
  - PR 534 will-moore 'get strings from omero.cmd.ERR and omero.CmdError correctly'
  - PR 554 chris-allan 'Optimize obj_id_bitmask by using its own query'
  - PR 555 chris-allan 'Archive status'
  - PR 558 jburel 'Update readme'
  - PR 560 will-moore 'linkify supports urls that include $ character'
  - PR 563 chris-allan 'Batch by MAX_TABLE_DOWNLOAD_ROWS'
  - PR 564 knabar 'New table API endpoints for lower level table access'

Generated by OMERO-python-superbuild-push#111 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/111/)'
2024-07-10 00:36:15,295 [     scc.git] DEBUG [detached HEAD d08de3f0f] merge master -Dorg -Ssuccess-only
2024-07-10 00:36:15,296 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-07-10 00:36:15,296 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-07-10 00:36:15,343 [  scc.config] DEBUG Found submodule.omero-dropbox.url
2024-07-10 00:36:15,604 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-10 00:36:15,618 [  scc.config] DEBUG Found submodule.omero-marshal.url
2024-07-10 00:36:16,019 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-10 00:36:16,032 [  scc.config] DEBUG Found submodule.omero-py.url
2024-07-10 00:36:16,434 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-10 00:36:16,446 [  scc.config] DEBUG Found submodule.omero-scripts.url
2024-07-10 00:36:16,850 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-10 00:36:16,863 [  scc.config] DEBUG Found submodule.omero-web.url
2024-07-10 00:36:17,262 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-07-10 00:36:17,271 [     scc.git] DEBUG Calling 'git status --porcelain'
2024-07-10 00:36:17,297 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7fb9b2727af0> has local changes
2024-07-10 00:36:17,297 [     scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only

Repository: ome/omero-python-superbuild
Already up to date.


Repository: ome/omero-dropbox
Already up to date.

Merged PRs:
  - PR 16 joshmoore 'Review all instances of whitelist/blacklist'

Repository: ome/omero-marshal
Excluded PRs:
  - PR 34 chris-allan 'Initial support for Event' (exclude comment)
  - PR 33 chris-allan 'Encode/Decode Experimenters with ExperimenterGroup' (exclude comment)
Already up to date.

Merged PRs:
  - PR 69 will-moore 'Roi encoder allows Shape None'

Repository: ome/omero-py
Excluded PRs:
  - PR 415 barrettMCW 'Fix reconnection issue' (user: barrettMCW)
  - PR 396 joshmoore 'Config property for passing environment variables (see #395)' (status: failure)
  - PR 387 will-moore 'Numpy pixels type' (label: exclude)
  - PR 325 JulianHn 'Addding support for other encodings than utf-8 in DownloadingOriginalFileProvider' (user: JulianHn)
  - PR 194 manics 'Support Python 3 asyncio concurrency' (stage: draft)
  - PR 129 dominikl 'Add option to create new ThumbnailStore connection' (exclude comment)
Already up to date.

Merged PRs:
  - PR 199 joshmoore 'user: allow setting default group'
  - PR 207 manics 'BlitzGateway.connect raise on error'
  - PR 266 joshmoore 'errors: use raise_error from cli plugins'
  - PR 299 joshmoore 'Add parents and children to omero obj'
  - PR 332 jburel 'Build conda'
  - PR 337 will-moore 'bulk.yml depth is passed to xargs'
  - PR 391 joshmoore 'Add jstack command'
  - PR 408 jburel 'remove deprecated method'
  - PR 416 sbesson 'Parse omero.logging properties under new Logging heading'
  - PR 417 chris-allan 'Switch result logging to DEBUG level'
  - PR 418 chris-allan 'Allow a caller to ignore row numbers'
  - PR 419 sbesson 'admin rewrite: make OMERO.tables module configurable'

Repository: ome/omero-scripts
Excluded PRs:
  - PR 216 Tom-TBT 'Key-value pair scripts enhancement' (user: Tom-TBT)
  - PR 206 Rdornier 'Adding a script that saves data owner as key-value pair' (user: Rdornier)
  - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
  - PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Already up to date.

Conflicting PRs (not included):
  - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'

Repository: ome/omero-web
Excluded PRs:
  - PR 562 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
  - PR 535 will-moore 'Initial working browser history' (stage: draft)
  - PR 168 stick 'Changes to nginx @maintenance handler' (status: failure)
Already up to date.

Merged PRs:
  - PR 527 will-moore 'Add some initial CSP settings to test'
  - PR 534 will-moore 'get strings from omero.cmd.ERR and omero.CmdError correctly'
  - PR 554 chris-allan 'Optimize obj_id_bitmask by using its own query'
  - PR 555 chris-allan 'Archive status'
  - PR 558 jburel 'Update readme'
  - PR 560 will-moore 'linkify supports urls that include $ character'
  - PR 563 chris-allan 'Batch by MAX_TABLE_DOWNLOAD_ROWS'
  - PR 564 knabar 'New table API endpoints for lower level table access'

Generated by OMERO-python-superbuild-push#111 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/111/)'
2024-07-10 00:36:17,306 [     scc.git] DEBUG [detached HEAD 17d3765] merge master -Dorg -Ssuccess-only
2024-07-10 00:36:17,306 [   scc.merge] INFO  Repository: ome/omero-python-superbuild
2024-07-10 00:36:17,306 [     scc.git] DEBUG  6 files changed, 10 insertions(+), 10 deletions(-)
2024-07-10 00:36:17,307 [   scc.merge] INFO  Already up to date.
2024-07-10 00:36:17,307 [   scc.merge] INFO  
2024-07-10 00:36:17,307 [   scc.merge] INFO  
2024-07-10 00:36:17,307 [   scc.merge] INFO  Repository: ome/omero-dropbox
2024-07-10 00:36:17,307 [   scc.merge] INFO  Already up to date.
2024-07-10 00:36:17,307 [   scc.merge] INFO  
2024-07-10 00:36:17,307 [   scc.merge] INFO  Merged PRs:
2024-07-10 00:36:17,307 [   scc.merge] INFO    - PR 16 joshmoore 'Review all instances of whitelist/blacklist'
2024-07-10 00:36:17,307 [   scc.merge] INFO  
2024-07-10 00:36:17,307 [   scc.merge] INFO  Repository: ome/omero-marshal
2024-07-10 00:36:17,307 [   scc.merge] INFO  Excluded PRs:
2024-07-10 00:36:17,307 [   scc.merge] INFO    - PR 34 chris-allan 'Initial support for Event' (exclude comment)
2024-07-10 00:36:17,307 [   scc.merge] INFO    - PR 33 chris-allan 'Encode/Decode Experimenters with ExperimenterGroup' (exclude comment)
2024-07-10 00:36:17,307 [   scc.merge] INFO  Already up to date.
2024-07-10 00:36:17,307 [   scc.merge] INFO  
2024-07-10 00:36:17,307 [   scc.merge] INFO  Merged PRs:
2024-07-10 00:36:17,307 [   scc.merge] INFO    - PR 69 will-moore 'Roi encoder allows Shape None'
2024-07-10 00:36:17,307 [   scc.merge] INFO  
2024-07-10 00:36:17,307 [   scc.merge] INFO  Repository: ome/omero-py
2024-07-10 00:36:17,307 [   scc.merge] INFO  Excluded PRs:
2024-07-10 00:36:17,307 [   scc.merge] INFO    - PR 415 barrettMCW 'Fix reconnection issue' (user: barrettMCW)
2024-07-10 00:36:17,307 [   scc.merge] INFO    - PR 396 joshmoore 'Config property for passing environment variables (see #395)' (status: failure)
2024-07-10 00:36:17,307 [   scc.merge] INFO    - PR 387 will-moore 'Numpy pixels type' (label: exclude)
2024-07-10 00:36:17,307 [   scc.merge] INFO    - PR 325 JulianHn 'Addding support for other encodings than utf-8 in DownloadingOriginalFileProvider' (user: JulianHn)
2024-07-10 00:36:17,307 [   scc.merge] INFO    - PR 194 manics 'Support Python 3 asyncio concurrency' (stage: draft)
2024-07-10 00:36:17,307 [   scc.merge] INFO    - PR 129 dominikl 'Add option to create new ThumbnailStore connection' (exclude comment)
2024-07-10 00:36:17,307 [   scc.merge] INFO  Already up to date.
2024-07-10 00:36:17,307 [   scc.merge] INFO  
2024-07-10 00:36:17,307 [   scc.merge] INFO  Merged PRs:
2024-07-10 00:36:17,307 [   scc.merge] INFO    - PR 199 joshmoore 'user: allow setting default group'
2024-07-10 00:36:17,307 [   scc.merge] INFO    - PR 207 manics 'BlitzGateway.connect raise on error'
2024-07-10 00:36:17,308 [   scc.merge] INFO    - PR 266 joshmoore 'errors: use raise_error from cli plugins'
2024-07-10 00:36:17,308 [   scc.merge] INFO    - PR 299 joshmoore 'Add parents and children to omero obj'
2024-07-10 00:36:17,308 [   scc.merge] INFO    - PR 332 jburel 'Build conda'
2024-07-10 00:36:17,308 [   scc.merge] INFO    - PR 337 will-moore 'bulk.yml depth is passed to xargs'
2024-07-10 00:36:17,308 [   scc.merge] INFO    - PR 391 joshmoore 'Add jstack command'
2024-07-10 00:36:17,308 [   scc.merge] INFO    - PR 408 jburel 'remove deprecated method'
2024-07-10 00:36:17,308 [   scc.merge] INFO    - PR 416 sbesson 'Parse omero.logging properties under new Logging heading'
2024-07-10 00:36:17,308 [   scc.merge] INFO    - PR 417 chris-allan 'Switch result logging to DEBUG level'
2024-07-10 00:36:17,308 [   scc.merge] INFO    - PR 418 chris-allan 'Allow a caller to ignore row numbers'
2024-07-10 00:36:17,308 [   scc.merge] INFO    - PR 419 sbesson 'admin rewrite: make OMERO.tables module configurable'
2024-07-10 00:36:17,308 [   scc.merge] INFO  
2024-07-10 00:36:17,308 [   scc.merge] INFO  Repository: ome/omero-scripts
2024-07-10 00:36:17,308 [   scc.merge] INFO  Excluded PRs:
2024-07-10 00:36:17,308 [   scc.merge] INFO    - PR 216 Tom-TBT 'Key-value pair scripts enhancement' (user: Tom-TBT)
2024-07-10 00:36:17,308 [   scc.merge] INFO    - PR 206 Rdornier 'Adding a script that saves data owner as key-value pair' (user: Rdornier)
2024-07-10 00:36:17,308 [   scc.merge] INFO    - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
2024-07-10 00:36:17,308 [   scc.merge] INFO    - PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
2024-07-10 00:36:17,308 [   scc.merge] INFO  Already up to date.
2024-07-10 00:36:17,308 [   scc.merge] INFO  
2024-07-10 00:36:17,308 [   scc.merge] INFO  Conflicting PRs (not included):
2024-07-10 00:36:17,308 [   scc.merge] INFO    - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2024-07-10 00:36:17,308 [   scc.merge] INFO  
2024-07-10 00:36:17,308 [   scc.merge] INFO  Repository: ome/omero-web
2024-07-10 00:36:17,308 [   scc.merge] INFO  Excluded PRs:
2024-07-10 00:36:17,308 [   scc.merge] INFO    - PR 562 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2024-07-10 00:36:17,308 [   scc.merge] INFO    - PR 535 will-moore 'Initial working browser history' (stage: draft)
2024-07-10 00:36:17,308 [   scc.merge] INFO    - PR 168 stick 'Changes to nginx @maintenance handler' (status: failure)
2024-07-10 00:36:17,308 [   scc.merge] INFO  Already up to date.
2024-07-10 00:36:17,308 [   scc.merge] INFO  
2024-07-10 00:36:17,308 [   scc.merge] INFO  Merged PRs:
2024-07-10 00:36:17,308 [   scc.merge] INFO    - PR 527 will-moore 'Add some initial CSP settings to test'
2024-07-10 00:36:17,308 [   scc.merge] INFO    - PR 534 will-moore 'get strings from omero.cmd.ERR and omero.CmdError correctly'
2024-07-10 00:36:17,308 [   scc.merge] INFO    - PR 554 chris-allan 'Optimize obj_id_bitmask by using its own query'
2024-07-10 00:36:17,308 [   scc.merge] INFO    - PR 555 chris-allan 'Archive status'
2024-07-10 00:36:17,308 [   scc.merge] INFO    - PR 558 jburel 'Update readme'
2024-07-10 00:36:17,308 [   scc.merge] INFO    - PR 560 will-moore 'linkify supports urls that include $ character'
2024-07-10 00:36:17,309 [   scc.merge] INFO    - PR 563 chris-allan 'Batch by MAX_TABLE_DOWNLOAD_ROWS'
2024-07-10 00:36:17,309 [   scc.merge] INFO    - PR 564 knabar 'New table API endpoints for lower level table access'
2024-07-10 00:36:17,309 [   scc.merge] INFO  
2024-07-10 00:36:17,309 [   scc.merge] DEBUG Cleaning remote branches created for merging
2024-07-10 00:36:17,309 [     scc.git] DEBUG Calling 'git remote'
2024-07-10 00:36:17,313 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-dropbox
2024-07-10 00:36:17,313 [     scc.git] DEBUG Calling 'git remote'
2024-07-10 00:36:17,316 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-07-10 00:36:17,316 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-marshal
2024-07-10 00:36:17,316 [     scc.git] DEBUG Calling 'git remote'
2024-07-10 00:36:17,320 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-07-10 00:36:17,320 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-py
2024-07-10 00:36:17,320 [     scc.git] DEBUG Calling 'git remote'
2024-07-10 00:36:17,324 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-07-10 00:36:17,324 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-scripts
2024-07-10 00:36:17,324 [     scc.git] DEBUG Calling 'git remote'
2024-07-10 00:36:17,327 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2024-07-10 00:36:17,327 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-web
2024-07-10 00:36:17,328 [     scc.git] DEBUG Calling 'git remote'
2024-07-10 00:36:17,331 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
Update component versions
Downloading https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-build-build/lastSuccessfulBuild/artifact/omero-blitz/build/distributions/omero-blitz-5.5.5-python.zip ...
Traceback (most recent call last):
  File "/home/omero/workspace/OMERO-python-superbuild-push/omero-py/setup.py", line 150, in <module>
    download_blitz_target()
  File "/home/omero/workspace/OMERO-python-superbuild-push/omero-py/setup.py", line 83, in download_blitz_target
    resp = urlopen(loc)
  File "/usr/lib64/python3.9/urllib/request.py", line 214, in urlopen
    return opener.open(url, data, timeout)
  File "/usr/lib64/python3.9/urllib/request.py", line 523, in open
    response = meth(req, response)
  File "/usr/lib64/python3.9/urllib/request.py", line 632, in http_response
    response = self.parent.error(
  File "/usr/lib64/python3.9/urllib/request.py", line 561, in error
    return self._call_chain(*args)
  File "/usr/lib64/python3.9/urllib/request.py", line 494, in _call_chain
    result = func(*args)
  File "/usr/lib64/python3.9/urllib/request.py", line 641, in http_error_default
    raise HTTPError(req.full_url, code, msg, hdrs, fp)
urllib.error.HTTPError: HTTP Error 404: Not Found
Downloading https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-build-build/lastSuccessfulBuild/artifact/omero-blitz/build/distributions/omero-blitz-5.5.5-python.zip ...
Traceback (most recent call last):
  File "/home/omero/workspace/OMERO-python-superbuild-push/omero-py/setup.py", line 150, in <module>
    download_blitz_target()
  File "/home/omero/workspace/OMERO-python-superbuild-push/omero-py/setup.py", line 83, in download_blitz_target
    resp = urlopen(loc)
  File "/usr/lib64/python3.9/urllib/request.py", line 214, in urlopen
    return opener.open(url, data, timeout)
  File "/usr/lib64/python3.9/urllib/request.py", line 523, in open
    response = meth(req, response)
  File "/usr/lib64/python3.9/urllib/request.py", line 632, in http_response
    response = self.parent.error(
  File "/usr/lib64/python3.9/urllib/request.py", line 561, in error
    return self._call_chain(*args)
  File "/usr/lib64/python3.9/urllib/request.py", line 494, in _call_chain
    result = func(*args)
  File "/usr/lib64/python3.9/urllib/request.py", line 641, in http_error_default
    raise HTTPError(req.full_url, code, msg, hdrs, fp)
urllib.error.HTTPError: HTTP Error 404: Not Found
grep: build.gradle: No such file or directory
Up-to-date: 
Up-to-date: 
grep: build.gradle: No such file or directory
Up-to-date: 
Up-to-date: 
grep: build.gradle: No such file or directory
Up-to-date: 
Up-to-date: 
grep: build.gradle: No such file or directory
Up-to-date: 
Up-to-date: 
grep: build.gradle: No such file or directory
Up-to-date: 
Up-to-date: 
Commit all component version changes
Entering 'omero-dropbox'
Entering 'omero-marshal'
Entering 'omero-py'
Entering 'omero-scripts'
Entering 'omero-web'
Entering 'omero-dropbox'
HEAD detached from a4307f4
nothing to commit, working tree clean
Entering 'omero-marshal'
HEAD detached from cca4c2f
nothing to commit, working tree clean
Entering 'omero-py'
HEAD detached from 8d8108de
nothing to commit, working tree clean
Entering 'omero-scripts'
HEAD detached from c20d273
nothing to commit, working tree clean
Entering 'omero-web'
HEAD detached from 5a2cd79d7
nothing to commit, working tree clean
HEAD detached from 46d23a1
nothing to commit, working tree clean
2024-07-10 00:36:48,113 [    scc.push] INFO  Merged branch pushed to https://github.com/snoopycrimecop/omero-python-superbuild/tree/merge_ci
[Pipeline] archiveArtifacts
Archiving artifacts
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: SUCCESS