Changes

merge master -Dorg -Ssuccess-only

Repository: ome/bio-formats-build
Already up to date.

Repository: ome/ZarrReader
Excluded PRs:
  - PR 20 dgault 'ZarrReader: Use chunk API' (exclude comment)
Already up to date.

Merged PRs:
  - PR 110 dominikl 'Fix Issue 109'

Repository: ome/bio-formats-documentation
Updating db99c10d..0d7fa8a0
Previously merged:
  - PR 436 pwalczysko 'Replace broken link in lemkesoft with working one'
  - PR 435 pwalczysko 'Replace nikoninstruments link with redirect'
  - PR 434 sbesson 'Add format page for Zeiss XRM format'
  - PR 432 sbesson 'Add release notes for upcoming Bio-Formats 8.3.0 release'
  - PR 433 sbesson 'Review list of dependencies for Bio-Formats 8.3.0'
  - PR 431 pwalczysko 'Fix limited javadoc syntax'
  - PR 430 pwalczysko 'Fix sourceforge'
  - PR 426 jburel 'Update EMAN2 URL'
  - PR 427 jburel 'Checking linkcheck config'
  - PR 422 melissalinkert 'Add page for JDCE'
  - PR 425 melissalinkert 'Release notes for 8.2.0'
  - PR 423 pwalczysko 'Replace link to Vaa3D for a relevant one and fix peng lab link'
  - PR 409 melissalinkert 'Link to Farsight GitHub instead of wiki'
  - PR 418 sbesson 'Update MATLAB documentation for colormap return value'
  - PR 421 dominikl 'Exclude merckmillipore.com from link check'

Repository: ome/bio-formats-examples
Updating 3aa7013..b6449b1
Previously merged:
  - PR 134 sbesson 'POM: cleanup outdated metadata'

Repository: openmicroscopy/bioformats
Excluded PRs:
  - PR 4260 melissalinkert 'UpgradeChecker: more thorough check of upgrade check result and HTTP response code' (stage: draft)
  - PR 4254 melissalinkert 'Memoizer: ask any ImageReader instances to remove all but the current reader' (stage: draft)
  - PR 3794 dgault 'Chunk API: Add new API and functionality for reading and writing chunks' (label: exclude)
  - PR 3618 dgault 'Memoizer: Persist caching to sub readers' (label: breaking)
Updating 3f70394503..647331112c
Previously merged:
  - PR 4348 sbesson 'FakeReader: link instrument to all images'
  - PR 4349 sbesson 'Add unit tests for ChannelMerger and ChannelSeparator'
  - PR 4351 sbesson 'GH release workflow: add flag to automatically generate notes'
  - PR 4345 melissalinkert 'ChannelMerger: correct number of Channels in MetadataStore'
  - PR 4347 melissalinkert 'Fix Metamorph .nd encoding'
  - PR 4341 melissalinkert 'Don't use position metadata when distinguishing between T and series'
  - PR 4307 jburel 'Build report'
  - PR 4343 sbesson 'Upgrade from commons-lang:commons-lang to org.apache.commons:commons-lang3'
  - PR 4332 melissalinkert 'ND2: add TextInfoItems to original metadata before parsing'
  - PR 4322 melissalinkert 'Metamorph: don't reset dimensions if the well count and series count match'
  - PR 4316 sbesson 'xmlvalid: consume OMEXMLServiceImpl.SCHEMA_CLASSPATH_READER'
  - PR 4338 sbesson 'org.openmicroscopy component updates'
  - PR 4294 nicolapapp 'Miscellaneous fixes to SlideBook7Reader.java'
  - PR 4336 sbesson 'TecanReader: use try-with-resources when opening SQL connection'
  - PR 4337 melissalinkert 'Metamorph TIFF: throw more explicit exceptions if parsing invalid TIFF'
  - PR 4331 melissalinkert 'Zeiss CZI: fix a few ID/reference issues'
  - PR 4319 melissalinkert 'Zeiss CZI: use millisecond units for exposure times attached to channels'
  - PR 4306 melissalinkert 'CZI: LightSource fixes, set LightSourceSettings.Attenuation'
  - PR 4328 melissalinkert 'Ventana .bif: fix LEFT overlap and add Z stack support'
  - PR 4317 melissalinkert 'Fix OME-TIFF optimal tile size if an IFD is not linked to an Image'
  - PR 4323 melissalinkert 'showinf: configure logging for `-omexml-only` after all arguments parsed'
  - PR 4327 melissalinkert 'Check modulo values in repository tests'
  - PR 4326 sbesson 'LiFlimReader: cast integers to double for division accuracy'
  - PR 4314 melissalinkert 'Operetta/Harmony: fix case where index XML is in the parent of the image directory'
  - PR 4309 odinsbane 'ND2Reader Changed the padding for a specific condition to pad to 4 byte boundaries.'
  - PR 4308 melissalinkert 'Add support for Zeiss XRM (.txm/.txrm) data'
  - PR 4311 sbesson 'Review declaration of Maven Scijava as a repository'
  - PR 4284 ptahmose 'fix for garbled images with CZIs'
  - PR 4289 melissalinkert 'ImageJ export plugin: add some checks to prevent file appending'
  - PR 4304 melissalinkert 'Leica LIF: map offsets to images by memory block ID'
  - PR 4305 melissalinkert 'Add reader for Molecular Devices JDCE'
  - PR 4293 sbesson 'Remove unnecessary Python script for bumping component versions'
  - PR 4302 sbesson 'Olympus ScanR: check getCurrentFile is the first value of getUsedFiles'
  - PR 4299 foxmja 'Added Multi-Page TIFF Support for Prairie Technologies TIFFs'
  - PR 4298 zacsimile 'Add frameFooterBytes to image stride for DCIMG >=0x1000000'
  - PR 4303 melissalinkert 'Fix Unidata repository URLs'

Merged PRs:
  - PR 4130 carandraug 'matlab/bfGetPlane.m: avoid use of makeDataArray2D when Octave (ome/bio-formats-octave-docker#29)'
  - PR 4243 melissalinkert 'Update IExtraMetadataWriter.setExtraMetadata(...) to accept an Object'
  - PR 4339 melissalinkert 'Fake: add `labelPlanes` option to add human-readable labels to planes'
  - PR 4350 sbesson 'Build report workflow: fix failure when no tests failed'
  - PR 4353 melissalinkert 'Fix tag encoding for LEO files'
  - PR 4354 melissalinkert 'DICOM: use `Study Time` tag as an extra check on whether files should be grouped'
  - PR 4355 zacsimile 'Fix DCIMG indexing over multiple files'

Repository: ome/ome-codecs
Updating fab1a01..a105f94
Previously merged:
  - PR 42 sbesson 'Update publication build system to use Central Portal'

Repository: ome/ome-common-java
Updating 2cb0b7b..5fd163e
Previously merged:
  - PR 100 melissalinkert 'Add DataTools.readFile signature that accepts an encoding name'
  - PR 101 sbesson 'Update deployment infrastructure to publish to Central Portal'
  - PR 99 melissalinkert 'Fix type of skipped bytes counter'
  - PR 98 sbesson 'Add CodeQL workflow running on push and pull request events'

Repository: ome/ome-jai
Updating e70c2ab..9f1b4ef
Previously merged:
  - PR 8 sbesson 'Update publication build system to use Central Portal '
  - PR 9 sbesson 'Replace usage of sun.security.action by PrivilegedAction'

Repository: ome/ome-mdbtools
Updating 9193930..9c3c3e2
Previously merged:
  - PR 14 sbesson 'Update publication system to use Central Portal'

Repository: ome/ome-metakit
Updating 1ba6cf1..8a3c6a1
Previously merged:
  - PR 27 sbesson 'Update publication build system to use Central Portal'

Repository: ome/ome-model
Updating 3d70a1f9..a3fb3465
Previously merged:
  - PR 222 sbesson 'Update publication build system to use Central Portal'
  - PR 221 melissalinkert 'Replace mailing lists and QA with forum.image.sc and Zenodo'

Repository: ome/ome-poi
Updating da3a5f3..2df7a4f
Previously merged:
  - PR 19 sbesson 'Update publication system to use Central Portal'

Repository: ome/ome-stubs
Updating 1559997..6a87342
Previously merged:
  - PR 12 sbesson 'Update publication build system to use Central Portal'

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