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Started by upstream project "BIOFORMATS-test-repo" build number 399 originally caused by: Started by upstream project "Trigger" build number 485 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins15974264035602034617.sh + '[' slidebook7 = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_62993_merge_ci -v /uod/idr/repos/curated/slidebook7:/data -v /uod/idr-scratch/merge-ci/curated/slidebook7:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:36:10,661 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 01:36:10,663 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 01:36:10,663 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:36:10,664 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:36:10,664 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:36:10,664 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:36:10,664 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:36:10,664 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:36:10,665 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:36:10,665 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:36:10,665 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:36:10,665 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:36:10,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:36:10,897 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:36:10,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:36:10,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:36:10,940 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:36:10,940 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:36:10,940 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:36:10,941 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:36:10,941 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 01:36:10,942 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 01:36:10,942 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 277 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-05-19 01:36:10,958] [main] java.version = 1.8.0_342 [testng] 01:36:10,963 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:36:10,963 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:36:11,019 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-05-19_01-36-10.log] [testng] 01:36:11,021 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-05-19 01:36:11,023] [main] testng.directory = /data [testng] [2025-05-19 01:36:11,023] [main] testng.configDirectory = /config [testng] [2025-05-19 01:36:11,036] [main] testng.multiplier = 1.0 [testng] [2025-05-19 01:36:11,036] [main] testng.in-memory = false [testng] [2025-05-19 01:36:11,036] [main] testng.allow-missing = false [testng] [2025-05-19 01:36:11,036] [main] user.language = fr [testng] [2025-05-19 01:36:11,036] [main] user.country = FR [testng] [2025-05-19 01:36:11,036] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-05-19 01:49:48,341] [main] ---------------------------------------- [testng] [2025-05-19 01:49:48,341] [main] Total files: 51 [testng] [2025-05-19 01:49:48,341] [main] Scan time: 817.304 s (16025 ms/file) [testng] [2025-05-19 01:49:48,341] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test /data/QwickTour/QweekTour.sldy [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-05-19 02:04:45,064] [pool-1-thread-1] Initializing /data/QwickTour/QweekTour.sldy: [testng] 02:04:45,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:04:45,065 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:04:45,066 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-05-19_02-04-45.log] [testng] 02:04:45,066 |-INFO in ch.qos.logback.core.sift.SiftProcessor@262fd002 - End of configuration. [testng] [2025-05-19 02:04:54,883] [pool-1-thread-1] DeltaT: FAILED (missing series 0, plane 150) [testng] [2025-05-19 02:04:54,911] [pool-1-thread-1] ImageDescriptions: FAILED (Series 0 (got 'DAPI: DNA, FITC: Ig, CY3: tubulin,', expected 'DAPI: DNA, FITC: Ig, CY3: tubulin,slice')) [testng] [2025-05-19 02:04:54,911] [pool-1-thread-1] ImageNames: FAILED (Series 0 (got 'Metaphase B-Cell', expected 'Metaphase B-Cell - 1')) [testng] [2025-05-19 02:06:01,582] [pool-1-thread-1] PlanePositions: FAILED (Z position series 0, plane 3 (expected 0.0, actual 0.10000000149011612)) [testng] [2025-05-19 02:06:19,562] [pool-1-thread-1] SizeC: FAILED (Series 0 (expected 6, actual 3)) [testng] [2025-05-19 02:06:35,758] [pool-1-thread-1] testUnflattenedImageNames: FAILED (Series 0 (got 'Metaphase B-Cell', expected 'Metaphase B-Cell - 1' or 'null')) [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 53, Failures: 11, Skips: 0 [testng] =============================================== [testng] [testng] The tests failed. BUILD FAILED /bio-formats-build/bioformats/components/test-suite/build.xml:270: if=failedTest Total time: 30 minutes 58 seconds Build step 'Execute shell' marked build as failure Finished: FAILURE