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Started by upstream project "BIOFORMATS-test-repo" build number 399 originally caused by: Started by upstream project "Trigger" build number 485 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins16384396980562485688.sh + '[' imagepro = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_63120_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 13:47:51,660 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 13:47:51,662 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 13:47:51,662 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 13:47:51,663 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 13:47:51,663 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 13:47:51,663 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 13:47:51,664 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 13:47:51,664 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 13:47:51,664 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 13:47:51,664 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 13:47:51,665 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 13:47:51,665 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 13:47:51,874 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 13:47:51,874 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 13:47:51,901 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 13:47:51,901 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 13:47:51,908 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 13:47:51,908 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 13:47:51,908 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 13:47:51,909 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 13:47:51,909 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 13:47:51,910 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 13:47:51,910 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 246 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-05-19 13:47:51,919] [main] java.version = 1.8.0_342 [testng] 13:47:51,922 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 13:47:51,922 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:47:51,966 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-05-19_13-47-51.log] [testng] 13:47:51,967 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-05-19 13:47:51,969] [main] testng.directory = /data [testng] [2025-05-19 13:47:51,969] [main] testng.configDirectory = /config [testng] [2025-05-19 13:47:51,980] [main] testng.multiplier = 1.0 [testng] [2025-05-19 13:47:51,981] [main] testng.in-memory = false [testng] [2025-05-19 13:47:51,981] [main] testng.allow-missing = false [testng] [2025-05-19 13:47:51,981] [main] user.language = fr [testng] [2025-05-19 13:47:51,981] [main] user.country = FR [testng] [2025-05-19 13:47:51,981] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-05-19 13:48:46,761] [main] ---------------------------------------- [testng] [2025-05-19 13:48:46,761] [main] Total files: 22 [testng] [2025-05-19 13:48:46,761] [main] Scan time: 54.78 s (2490 ms/file) [testng] [2025-05-19 13:48:46,761] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-05-19 13:52:32,919] [pool-1-thread-1] Initializing /data/converted/mitosis-test.seq: [testng] 13:52:32,920 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 13:52:32,920 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:32,920 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-05-19_13-52-32.log] [testng] 13:52:32,921 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5bb4fe4d - End of configuration. [testng] [2025-05-19 13:52:41,487] [pool-1-thread-12] Initializing /data/alex/AFAset0003.ips: [testng] 13:52:41,487 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 13:52:41,487 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:41,488 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-05-19_13-52-41.log] [testng] 13:52:41,488 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6725ca8c - End of configuration. [testng] [2025-05-19 13:52:49,861] [pool-1-thread-11] Initializing /data/converted/clown.seq: [testng] 13:52:49,861 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 13:52:49,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:49,862 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-05-19_13-52-49.log] [testng] 13:52:49,863 |-INFO in ch.qos.logback.core.sift.SiftProcessor@420ac9ee - End of configuration. [testng] [2025-05-19 13:52:58,148] [pool-1-thread-10] Initializing /data/converted/dub01.pic: [testng] 13:52:58,148 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 13:52:58,148 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:58,148 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-05-19_13-52-58.log] [testng] 13:52:58,149 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18b516c3 - End of configuration. [testng] [2025-05-19 13:53:05,776] [pool-1-thread-9] Initializing /data/converted/clown.tif: [testng] 13:53:05,776 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 13:53:05,776 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:53:05,776 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-05-19_13-53-05.log] [testng] 13:53:05,777 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29caa7a6 - End of configuration. [testng] [2025-05-19 13:53:13,648] [pool-1-thread-8] Initializing /data/converted/clown8c.tif: [testng] 13:53:13,649 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 13:53:13,649 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:53:13,649 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-05-19_13-53-13.log] [testng] 13:53:13,650 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a3ab076 - End of configuration. [testng] [2025-05-19 13:53:32,641] [pool-1-thread-7] Initializing /data/converted/NESb_C2_TP7.ipw: [testng] 13:53:32,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 13:53:32,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:53:32,642 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-05-19_13-53-32.log] [testng] 13:53:32,642 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b2ddf71 - End of configuration. [testng] [2025-05-19 13:53:39,549] [pool-1-thread-6] Initializing /data/samples/FLDUAL.TIF: [testng] 13:53:39,549 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 13:53:39,549 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:53:39,549 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-05-19_13-53-39.log] [testng] 13:53:39,550 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7bbad04c - End of configuration. [testng] [2025-05-19 13:53:58,222] [pool-1-thread-5] Initializing /data/converted/clown8c.ipw: [testng] 13:53:58,222 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 13:53:58,222 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:53:58,222 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-05-19_13-53-58.log] [testng] 13:53:58,223 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a5c17f6 - End of configuration. [testng] [2025-05-19 13:54:05,813] [pool-1-thread-4] Initializing /data/converted/mitosis-test.ipw: [testng] 13:54:05,813 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 13:54:05,813 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:54:05,814 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-05-19_13-54-05.log] [testng] 13:54:05,814 |-INFO in ch.qos.logback.core.sift.SiftProcessor@608f2855 - End of configuration. [testng] [2025-05-19 13:54:12,978] [pool-1-thread-3] Initializing /data/samples/PROBE.TIF: [testng] 13:54:12,978 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 13:54:12,978 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:54:12,978 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-05-19_13-54-12.log] [testng] 13:54:12,979 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31a0ee07 - End of configuration. [testng] [2025-05-19 13:54:20,625] [pool-1-thread-2] Initializing /data/converted/clown.ipw: [testng] 13:54:20,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 13:54:20,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:54:20,626 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-05-19_13-54-20.log] [testng] 13:54:20,626 |-INFO in ch.qos.logback.core.sift.SiftProcessor@356da2d4 - End of configuration. [testng] [2025-05-19 13:55:16,308] [pool-1-thread-5] Initializing /data/converted/NESb_C2_TP7.tiff: [testng] [2025-05-19 13:55:35,188] [pool-1-thread-4] Initializing /data/converted/mitosis-test.tif: [testng] [2025-05-19 13:55:54,467] [pool-1-thread-7] Initializing /data/samples/HEART.SEQ: [testng] [2025-05-19 13:56:02,634] [pool-1-thread-10] Initializing /data/converted/clown8c.seq: [testng] [2025-05-19 13:56:10,833] [pool-1-thread-2] Initializing /data/converted/NESb_C2_TP7.seq: [testng] [2025-05-19 13:56:18,798] [pool-1-thread-3] Initializing /data/xiuwen/head2.seq: [testng] [2025-05-19 13:56:26,168] [pool-1-thread-11] Initializing /data/converted/dub01.seq: [testng] [2025-05-19 13:56:34,037] [pool-1-thread-1] Initializing /data/converted/dub01.ipw: [testng] [2025-05-19 13:56:41,723] [pool-1-thread-9] Initializing /data/samples/TISSUE.TIF: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 42 minutes 6 seconds Finished: SUCCESS