00:38:38Started by upstream project "Trigger" build number 45300:38:38originally caused by:
00:38:38 Started by timer
00:38:38Running as SYSTEM
00:38:38Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
00:38:38The recommended git tool is: NONE
00:38:38No credentials specified
00:38:38 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
00:38:38Fetching changes from the remote Git repository
00:38:38 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
00:38:38Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git00:38:38 > git --version # timeout=10
00:38:38 > git --version # 'git version 2.43.5'
00:38:38 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
00:38:39 > git rev-parse origin/merge_ci^{commit} # timeout=10
00:38:39Checking out Revision 32098694c37435dd7f811dd5a62b9df2a174159b (origin/merge_ci)
00:38:39 > git config core.sparsecheckout # timeout=10
00:38:39 > git checkout -f 32098694c37435dd7f811dd5a62b9df2a174159b # timeout=10
00:38:39Commit message: "Add version.properties to etc/omero.properties"
00:38:39 > git rev-list --no-walk 8c3c0105816b2700eb16c3f032e5a7de7c58323a # timeout=10
00:38:39Cleaning workspace
00:38:39 > git rev-parse --verify HEAD # timeout=10
00:38:39Resetting working tree
00:38:39 > git reset --hard # timeout=10
00:38:39 > git clean -fdx # timeout=10
00:38:39Copied 6 artifacts from "OMERO-python-superbuild-build" build number 38600:38:39[OMERO-build] $ /bin/bash -xe /tmp/jenkins5195102767208863849.sh
00:38:39+ mv omero-scripts/dist/omero_scripts-5.9.1.dev0.tar.gz .
00:38:39+ cd src
00:38:39+ export OMERO_BRANCH=merge_ci
00:38:39+ OMERO_BRANCH=merge_ci
00:38:39+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
00:38:39+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
00:38:39+ source /home/omero/settings.env
00:38:39++ OMERO_DB_HOST=pg
00:38:39++ OMERO_DB_USER=postgres
00:38:39++ OMERO_DB_PASS=
00:38:39++ OMERO_ROOT_PASS=omero
00:38:39++ OMERO_DATA_DIR=/OMERO
00:38:39++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:38:39+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
00:38:43+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl00:38:43Collecting zeroc-ice==3.6.5
00:38:44 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:38:46 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 12.3 MB/s eta 0:00:00
00:38:46Installing collected packages: zeroc-ice
00:38:47Successfully installed zeroc-ice-3.6.5
00:38:4700:38:47[notice] A new release of pip available: 22.3.1 -> 25.0.1
00:38:47[notice] To update, run: python3.11 -m pip install --upgrade pip
00:38:47+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
00:38:47Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
00:38:48Collecting setuptools<66
00:38:48 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
00:38:48Collecting omero-py
00:38:48 Using cached omero_py-5.20.0-py3-none-any.whl (2.8 MB)
00:38:48Collecting urllib3<2
00:38:48 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
00:38:48Collecting appdirs
00:38:48 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:38:48Collecting future
00:38:48 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:38:48Collecting numpy<3
00:38:48 Using cached numpy-2.2.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (16.4 MB)
00:38:49Collecting Pillow>=10.0.0
00:38:49 Using cached pillow-11.2.1-cp311-cp311-manylinux_2_28_x86_64.whl (4.6 MB)
00:38:49Collecting PyYAML
00:38:49 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB)
00:38:49Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
00:38:49Collecting requests
00:38:49 Using cached requests-2.32.3-py3-none-any.whl (64 kB)
00:38:49Collecting portalocker
00:38:49 Using cached portalocker-3.1.1-py3-none-any.whl (19 kB)
00:38:49Collecting charset-normalizer<4,>=2
00:38:49 Using cached charset_normalizer-3.4.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (143 kB)
00:38:49Collecting idna<4,>=2.5
00:38:49 Using cached idna-3.10-py3-none-any.whl (70 kB)
00:38:49Collecting certifi>=2017.4.17
00:38:49 Downloading certifi-2025.4.26-py3-none-any.whl (159 kB)
00:38:50 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 159.6/159.6 kB 5.6 MB/s eta 0:00:00
00:38:50Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset-normalizer, certifi, requests, omero-py
00:38:50 Attempting uninstall: setuptools
00:38:50 Found existing installation: setuptools 65.5.1
00:38:50 Uninstalling setuptools-65.5.1:
00:38:50 Successfully uninstalled setuptools-65.5.1
00:38:55Successfully installed Pillow-11.2.1 PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.4.26 charset-normalizer-3.4.1 future-1.0.0 idna-3.10 numpy-2.2.5 omero-py-5.20.0 portalocker-3.1.1 requests-2.32.3 setuptools-65.7.0 urllib3-1.26.20
00:38:5500:38:55[notice] A new release of pip available: 22.3.1 -> 25.0.1
00:38:55[notice] To update, run: python3.11 -m pip install --upgrade pip
00:38:56+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
00:38:56++ deactivate nondestructive
00:38:56++ '[' -n '' ']'
00:38:56++ '[' -n '' ']'
00:38:56++ hash -r
00:38:56++ '[' -n '' ']'
00:38:56++ unset VIRTUAL_ENV
00:38:56++ unset VIRTUAL_ENV_PROMPT
00:38:56++ '[' '!' nondestructive = nondestructive ']'
00:38:56++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
00:38:56++ export VIRTUAL_ENV
00:38:56++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:38:56++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:38:56++ export PATH
00:38:56++ '[' -n '' ']'
00:38:56++ '[' -z '' ']'
00:38:56++ _OLD_VIRTUAL_PS1=
00:38:56++ PS1='(omero-virtualenv) '
00:38:56++ export PS1
00:38:56++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
00:38:56++ export VIRTUAL_ENV_PROMPT
00:38:56++ hash -r
00:38:56+ source docs/hudson/OMERO.sh
00:38:56++ set -e
00:38:56++ set -u
00:38:56++ set -x
00:38:56++ source docs/hudson/functions.sh
00:38:56++ echo Building merge_ci
00:38:56Building merge_ci
00:38:56++ python3 ./build.py build-dev release-all
00:38:56Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:38:5600:38:56check-ivy:
00:38:56Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
00:38:56Created dir: /home/omero/workspace/OMERO-build/src/target
00:38:56:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:38:56:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:38:5700:38:57build-scons:
00:38:57Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:38:57No sub-builds to iterate on
00:38:57Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:38:5700:38:57buildlist:
00:38:57:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:38:57:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:38:5700:38:57clean:
00:38:57Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:38:58Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:38:5800:38:58python-clean:
00:38:58WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:38:58/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-32098694c3-ice36-b394') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:38:58 warnings.warn(
00:38:58running clean
00:38:58Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
00:38:58Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:38:5800:38:58python-clean:
00:38:58WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:38:58/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-32098694c3-ice36-b394') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:38:58 warnings.warn(
00:38:58running clean
00:38:58Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
00:38:58Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:38:58Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:38:58Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:38:5800:38:58python-clean:
00:38:58WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:38:58/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-32098694c3-ice36-b394') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:38:58 warnings.warn(
00:38:58running clean
00:38:59Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
00:38:59Deleting directory /home/omero/workspace/OMERO-build/src/target
00:38:5900:38:59build-scons:
00:38:59Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:38:5900:38:59build:
00:38:59No sub-builds to iterate on
00:38:59Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:38:59Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:38:59Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:38:59Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:38:5900:38:59tools-init:
00:38:59no-op
00:38:5900:38:59retrieve:
00:38:59:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:38:59:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:39:00WARNING: An illegal reflective access operation has occurred
00:39:00WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
00:39:00WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
00:39:00WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
00:39:00WARNING: All illegal access operations will be denied in a future release
00:39:1600:39:16prepare:
00:39:16Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:39:16Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
00:39:16Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
00:39:16Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:39:16Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:39:16Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:39:16Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
00:39:16Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:39:16Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:39:16Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:39:16Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:39:16Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:39:16Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:39:16Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:39:16Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:39:1600:39:16pre-compile:
00:39:16Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:39:16Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:39:16Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:39:16Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:39:16Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:39:1600:39:16compile:
00:39:16no-op
00:39:1600:39:16package:
00:39:16Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
00:39:1700:39:17install:
00:39:17:: delivering :: omero#omero_client;working@db631b687d0c :: 5.6.3-552-32098694c3-ice36-b394 :: integration :: Sun Apr 27 00:38:59 UTC 2025
00:39:17 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
00:39:17:: publishing :: omero#omero_client
00:39:17 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-552-32098694c3-ice36-b394/omero_client-5.6.3-552-32098694c3-ice36-b394.jar
00:39:17 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-552-32098694c3-ice36-b394/omero_client-5.6.3-552-32098694c3-ice36-b394.xml
00:39:17Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:39:17Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:39:1700:39:17retrieve:
00:39:17:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:39:17:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:39:18Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:39:1800:39:18dist:
00:39:18Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
00:39:18Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
00:39:18Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:39:18Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:39:18Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
00:39:18Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
00:39:18Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
00:39:18Entering /home/omero/workspace/OMERO-build/src/components/tests...
00:39:18Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:39:1800:39:18copy-licenses:
00:39:18Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:39:18Created dir: /home/omero/workspace/OMERO-build/src/dist/share
00:39:18Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
00:39:1800:39:18copy-history:
00:39:18Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:39:1800:39:18copy-etc:
00:39:18Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
00:39:18Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
00:39:1800:39:18copy-sql:
00:39:18Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
00:39:2200:39:22copy-server:
00:39:22 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
00:39:2200:39:22copy-client:
00:39:22Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
00:39:23 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
00:39:2400:39:24update-version:
00:39:24Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
00:39:2400:39:24create-workdirs:
00:39:24Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
00:39:24Created dir: /home/omero/workspace/OMERO-build/src/dist/var
00:39:2400:39:24copy-luts:
00:39:24Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:39:24Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:39:2400:39:24test-compile:
00:39:24:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:39:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:39:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:39:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:39:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:39:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:39:24Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:39:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:39:2400:39:24testng-init:
00:39:24:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:39:24:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:39:2700:39:27,297 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
00:39:2700:39:27,299 |-INFO in ch.qos.logback.classic.util.ContextInitializer@78682201 - No custom configurators were discovered as a service.
00:39:2700:39:27,299 |-INFO in ch.qos.logback.classic.util.ContextInitializer@78682201 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
00:39:2700:39:27,303 |-INFO in ch.qos.logback.classic.util.ContextInitializer@78682201 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
00:39:2700:39:27,303 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
00:39:2700:39:27,303 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
00:39:2700:39:27,304 |-INFO in ch.qos.logback.classic.util.ContextInitializer@78682201 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
00:39:2700:39:27,304 |-INFO in ch.qos.logback.classic.util.ContextInitializer@78682201 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
00:39:2700:39:27,306 |-INFO in ch.qos.logback.classic.util.ContextInitializer@78682201 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
00:39:2700:39:27,306 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
00:39:2700:39:27,306 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:39:2700:39:27,307 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7d7a0e06 - Resource [logback.xml] occurs multiple times on the classpath.
00:39:2700:39:27,307 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7d7a0e06 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:39:2700:39:27,307 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7d7a0e06 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
00:39:2700:39:27,500 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
00:39:2700:39:27,500 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
00:39:2700:39:27,519 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
00:39:2700:39:27,521 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2c3f9229 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
00:39:2700:39:27,521 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2c3f9229 - Please move "immediateFlush" property into the enclosing appender.
00:39:2700:39:27,580 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2c3f9229 - Setting the "immediateFlush" property of the enclosing appender to true
00:39:2700:39:27,581 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
00:39:2700:39:27,581 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
00:39:2700:39:27,581 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
00:39:2700:39:27,581 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
00:39:2700:39:27,581 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
00:39:2700:39:27,581 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
00:39:2700:39:27,582 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@abe3a3 - End of configuration.
00:39:2700:39:27,584 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@396ab19d - Registering current configuration as safe fallback point
00:39:2700:39:27,584 |-INFO in ch.qos.logback.classic.util.ContextInitializer@78682201 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 278 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
00:39:2700:39:27lifecycle.test-compile:
00:39:27Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:39:27Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:39:27warning: [options] bootstrap class path not set in conjunction with -source 8
00:39:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:39:29import omero.grid.RawAccessRequest;
00:39:29 ^
00:39:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:39:29import omero.grid.RawAccessRequest;
00:39:29 ^
00:39:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:39:29import omero.grid.RawAccessRequest;
00:39:29 ^
00:39:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
00:39:29import omero.model.ImportJob;
00:39:29 ^
00:39:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:39:29import omero.model.ImportJobI;
00:39:29 ^
00:39:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
00:39:30 IObject link = (IObject) linkClass.newInstance();
00:39:30 ^
00:39:30 where T is a type-variable:
00:39:30 T extends Object declared in class Class
00:39:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
00:39:30 T copy = (T) obj.getClass().newInstance();
00:39:30 ^
00:39:30 where T is a type-variable:
00:39:30 T extends Object declared in class Class
00:39:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:39:30 RawAccessRequest raw = new RawAccessRequest();
00:39:30 ^
00:39:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:39:30 RawAccessRequest raw = new RawAccessRequest();
00:39:30 ^
00:39:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:39:30 raw.repoUuid = legacy.root().getHash().getValue();
00:39:30 ^
00:39:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
00:39:30 raw.command = "rm";
00:39:30 ^
00:39:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
00:39:30 raw.args = Arrays.asList(path);
00:39:30 ^
00:39:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
00:39:30 final IObject link = linkClass.newInstance();
00:39:30 ^
00:39:30 where T is a type-variable:
00:39:30 T extends Object declared in class Class
00:39:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
00:39:30 originalLink.setChild(annotationClass.newInstance());
00:39:30 ^
00:39:30 where T is a type-variable:
00:39:30 T extends Object declared in class Class
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:39:31 RoiResult r = svc.findByImage(id, new RoiOptions());
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:39:31 final RawAccessRequest request = new RawAccessRequest();
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:39:31 final RawAccessRequest request = new RawAccessRequest();
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:39:31 request.repoUuid = repo.root().getHash().getValue();
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
00:39:31 request.command = "exists";
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
00:39:31 request.args = Collections.singletonList(dirPath);
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:39:31 final RawAccessRequest request = new RawAccessRequest();
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:39:31 final RawAccessRequest request = new RawAccessRequest();
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:39:31 request.repoUuid = repo.root().getHash().getValue();
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
00:39:31 request.command = "exists";
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
00:39:31 request.args = Collections.singletonList(dirName);
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
00:39:31 final ImportJob importJob = new ImportJobI();
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:39:31 final ImportJob importJob = new ImportJobI();
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
00:39:31 importJob.setImageName(omero.rtypes.rstring(name));
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
00:39:31 importJob.setImageDescription(omero.rtypes.rstring(desc));
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:39:31 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:39:31 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:39:31 final String savedName = sent.getImageName().getValue().toString();
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:39:31 final String savedDesc = sent.getImageDescription().getValue().toString();
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:39:31 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:39:31 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:39:31 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:39:31 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:39:31 RoiResult r = svc.findByImage(image.getId().getValue(),
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:39:31 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:39:31 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:39:31 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:39:31 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
00:39:31 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:39:31 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
00:39:31 table = svc.getTable(f.getId().getValue());
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:39:31 RoiResult r = svc.findByImage(image.getId().getValue(),
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:39:31 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:39:31 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:39:31 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:39:31 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:31 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:31 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:31 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:31 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
00:39:31 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:31 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:31 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:31 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:31 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:39:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:39:31 svc.getShapeStatsRestricted(
00:39:31 ^
00:39:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:39:31 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
00:39:31 ^
00:39:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:39:32 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:39:32 ^
00:39:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:39:32 request.typesToIgnore = Collections.singletonList("TagAnnotation");
00:39:32 ^
00:39:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:39:32 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
00:39:32 ^
00:39:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:39:32 request.typesToIgnore = Collections.singletonList("Annotation");
00:39:32 ^
00:39:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:39:32 request.typesToIgnore = Collections.singletonList("Annotation");
00:39:32 ^
00:39:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:39:32 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:39:32 ^
00:39:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:39:32 p2.setRelatedTo(p1);
00:39:32 ^
00:39:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:39:32 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
00:39:32 ^
00:39:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:39:32 pixels1.setRelatedTo(pixels2);
00:39:32 ^
00:39:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:39:32 Pixels pixels = pixels1.getRelatedTo();
00:39:32 ^
00:39:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:39:32 Assert.assertNull(pixels1.getRelatedTo());
00:39:32 ^
00:39:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:39:32 pixels1.setRelatedTo(pixels2);
00:39:32 ^
00:39:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:39:32 Pixels pixels = pixels1.getRelatedTo();
00:39:32 ^
00:39:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:39:32 Assert.assertNull(pixels1.getRelatedTo());
00:39:32 ^
00:39:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:39:32 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:39:32 ^
00:39:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:39:32 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:39:32 ^
00:39:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:39:32 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:39:32 ^
00:39:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:39:32 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:39:32 ^
00:39:32Note: Some input files use unchecked or unsafe operations.
00:39:32Note: Recompile with -Xlint:unchecked for details.
00:39:3288 warnings
00:39:32Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_938929018.tmp
00:39:32Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
00:39:32:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:39:32:: delivering :: omero#OmeroJava-test;working@db631b687d0c :: 5.6.3-552-32098694c3-ice36-b394 :: integration :: Sun Apr 27 00:39:24 UTC 2025
00:39:32 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
00:39:32:: publishing :: omero#OmeroJava-test
00:39:32 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-552-32098694c3-ice36-b394.jar
00:39:32 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-552-32098694c3-ice36-b394.xml
00:39:3200:39:32build-eclipse:
00:39:32No sub-builds to iterate on
00:39:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:39:3300:39:33retrieve:
00:39:33:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:39:33:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:39:3500:39:35prepare:
00:39:35Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:39:3600:39:36release-clients:
00:39:36Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-552-32098694c3-ice36-b394.zip
00:39:4300:39:43release-zip:
00:39:43Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-552-32098694c3-ice36-b394.zip
00:39:5600:39:56BUILD SUCCESSFUL
00:39:56Total time: 1 minute 0 seconds
00:39:56++ '[' -d .git ']'
00:39:56++ python3 ./build.py release-src
00:39:56Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:39:5700:39:57release-src-git:
00:39:57Releasing openmicroscopy-5.6.3-552-32098694c3-ice36-b394
00:39:58 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-552-32098694c3-ice36-b394.zip
00:39:58 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-552-32098694c3-ice36-b394-base.zip
00:40:0000:40:00BUILD SUCCESSFUL
00:40:00Total time: 3 seconds
00:40:00++ echo BUILD_NUMBER=394
00:40:00++ echo OMERO_BRANCH=merge_ci
00:40:00++ git_info
00:40:00+++ git rev-parse HEAD
00:40:00++ HEAD=32098694c37435dd7f811dd5a62b9df2a174159b
00:40:00++ git log --max-count=1 32098694c37435dd7f811dd5a62b9df2a174159b
00:40:00++ env
00:40:00++ sort
00:40:00Archiving artifacts
00:40:28Finished: SUCCESS
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