01:21:43Started by upstream project "Trigger" build number 45501:21:43originally caused by:
01:21:43 Started by timer
01:21:43Running as SYSTEM
01:21:43Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
01:21:43The recommended git tool is: NONE
01:21:43No credentials specified
01:21:43 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
01:21:43Fetching changes from the remote Git repository
01:21:43 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
01:21:43Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git01:21:43 > git --version # timeout=10
01:21:43 > git --version # 'git version 2.43.5'
01:21:43 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
01:21:43 > git rev-parse origin/merge_ci^{commit} # timeout=10
01:21:43Checking out Revision 0e25b866b5d8438205900870b47fe8dc9470a715 (origin/merge_ci)
01:21:43 > git config core.sparsecheckout # timeout=10
01:21:43 > git checkout -f 0e25b866b5d8438205900870b47fe8dc9470a715 # timeout=10
01:21:43Commit message: "Add version.properties to etc/omero.properties"
01:21:43 > git rev-list --no-walk 809e5a9ab3d9a83e2d1a289d8eb7b5b2106ca672 # timeout=10
01:21:43Cleaning workspace
01:21:43 > git rev-parse --verify HEAD # timeout=10
01:21:43Resetting working tree
01:21:43 > git reset --hard # timeout=10
01:21:43 > git clean -fdx # timeout=10
01:21:44Copied 6 artifacts from "OMERO-python-superbuild-build" build number 38801:21:44[OMERO-build] $ /bin/bash -xe /tmp/jenkins7642802968051227542.sh
01:21:44+ mv omero-scripts/dist/omero_scripts-5.9.1.dev0.tar.gz .
01:21:44+ cd src
01:21:44+ export OMERO_BRANCH=merge_ci
01:21:44+ OMERO_BRANCH=merge_ci
01:21:44+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
01:21:44+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
01:21:44+ source /home/omero/settings.env
01:21:44++ OMERO_DB_HOST=pg
01:21:44++ OMERO_DB_USER=postgres
01:21:44++ OMERO_DB_PASS=
01:21:44++ OMERO_ROOT_PASS=omero
01:21:44++ OMERO_DATA_DIR=/OMERO
01:21:44++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:21:44+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
01:21:47+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl01:21:48Collecting zeroc-ice==3.6.5
01:21:48 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
01:21:51 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 6.0 MB/s eta 0:00:00
01:21:52Installing collected packages: zeroc-ice
01:21:52Successfully installed zeroc-ice-3.6.5
01:21:5201:21:52[notice] A new release of pip available: 22.3.1 -> 25.1
01:21:52[notice] To update, run: python3.11 -m pip install --upgrade pip
01:21:52+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
01:21:53Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
01:21:53Collecting setuptools<66
01:21:53 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
01:21:53Collecting omero-py
01:21:53 Using cached omero_py-5.20.0-py3-none-any.whl (2.8 MB)
01:21:53Collecting urllib3<2
01:21:53 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
01:21:53Collecting appdirs
01:21:53 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
01:21:53Collecting future
01:21:53 Using cached future-1.0.0-py3-none-any.whl (491 kB)
01:21:54Collecting numpy<3
01:21:54 Using cached numpy-2.2.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (16.4 MB)
01:21:54Collecting Pillow>=10.0.0
01:21:54 Using cached pillow-11.2.1-cp311-cp311-manylinux_2_28_x86_64.whl (4.6 MB)
01:21:54Collecting PyYAML
01:21:54 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB)
01:21:55Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
01:21:55Collecting requests
01:21:55 Using cached requests-2.32.3-py3-none-any.whl (64 kB)
01:21:55Collecting portalocker
01:21:55 Using cached portalocker-3.1.1-py3-none-any.whl (19 kB)
01:21:55Collecting charset-normalizer<4,>=2
01:21:55 Using cached charset_normalizer-3.4.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (143 kB)
01:21:55Collecting idna<4,>=2.5
01:21:55 Using cached idna-3.10-py3-none-any.whl (70 kB)
01:21:55Collecting certifi>=2017.4.17
01:21:55 Using cached certifi-2025.4.26-py3-none-any.whl (159 kB)
01:21:55Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset-normalizer, certifi, requests, omero-py
01:21:55 Attempting uninstall: setuptools
01:21:55 Found existing installation: setuptools 65.5.1
01:21:55 Uninstalling setuptools-65.5.1:
01:21:55 Successfully uninstalled setuptools-65.5.1
01:22:01Successfully installed Pillow-11.2.1 PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.4.26 charset-normalizer-3.4.1 future-1.0.0 idna-3.10 numpy-2.2.5 omero-py-5.20.0 portalocker-3.1.1 requests-2.32.3 setuptools-65.7.0 urllib3-1.26.20
01:22:0101:22:01[notice] A new release of pip available: 22.3.1 -> 25.1
01:22:01[notice] To update, run: python3.11 -m pip install --upgrade pip
01:22:01+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
01:22:01++ deactivate nondestructive
01:22:01++ '[' -n '' ']'
01:22:01++ '[' -n '' ']'
01:22:01++ hash -r
01:22:01++ '[' -n '' ']'
01:22:01++ unset VIRTUAL_ENV
01:22:01++ unset VIRTUAL_ENV_PROMPT
01:22:01++ '[' '!' nondestructive = nondestructive ']'
01:22:01++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
01:22:01++ export VIRTUAL_ENV
01:22:01++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:22:01++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:22:01++ export PATH
01:22:01++ '[' -n '' ']'
01:22:01++ '[' -z '' ']'
01:22:01++ _OLD_VIRTUAL_PS1=
01:22:01++ PS1='(omero-virtualenv) '
01:22:01++ export PS1
01:22:01++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
01:22:01++ export VIRTUAL_ENV_PROMPT
01:22:01++ hash -r
01:22:01+ source docs/hudson/OMERO.sh
01:22:01++ set -e
01:22:01++ set -u
01:22:01++ set -x
01:22:01++ source docs/hudson/functions.sh
01:22:01++ echo Building merge_ci
01:22:01Building merge_ci
01:22:01++ python3 ./build.py build-dev release-all
01:22:01Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
01:22:0201:22:02check-ivy:
01:22:02Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
01:22:02Created dir: /home/omero/workspace/OMERO-build/src/target
01:22:02:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:22:02:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:22:0201:22:02build-scons:
01:22:02Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
01:22:02No sub-builds to iterate on
01:22:02Entering /home/omero/workspace/OMERO-build/src/components/tools...
01:22:0301:22:03buildlist:
01:22:03:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:22:03:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:22:0301:22:03clean:
01:22:03Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:22:03Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:22:0301:22:03python-clean:
01:22:03WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:22:03/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-0e25b866b5-ice36-b396') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:22:03 warnings.warn(
01:22:03running clean
01:22:03Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
01:22:03Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:22:0401:22:04python-clean:
01:22:04WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:22:04/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-0e25b866b5-ice36-b396') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:22:04 warnings.warn(
01:22:04running clean
01:22:04Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
01:22:04Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:22:04Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:22:04Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:22:0401:22:04python-clean:
01:22:04WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:22:04/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-0e25b866b5-ice36-b396') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:22:04 warnings.warn(
01:22:04running clean
01:22:04Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
01:22:04Deleting directory /home/omero/workspace/OMERO-build/src/target
01:22:0401:22:04build-scons:
01:22:04Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
01:22:0401:22:04build:
01:22:04No sub-builds to iterate on
01:22:04Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:22:04Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:22:04Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:22:04Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:22:0401:22:04tools-init:
01:22:04no-op
01:22:0501:22:05retrieve:
01:22:05:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:22:05:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:22:05WARNING: An illegal reflective access operation has occurred
01:22:05WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
01:22:05WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
01:22:05WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
01:22:05WARNING: All illegal access operations will be denied in a future release
01:22:3201:22:32prepare:
01:22:32Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
01:22:32Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
01:22:32Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
01:22:32Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:22:32Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:22:32Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:22:32Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
01:22:32Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:22:32Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:22:32Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:22:32Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:22:32Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:22:32Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:22:32Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:22:32Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:22:3201:22:32pre-compile:
01:22:32Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:22:32Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:22:32Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:22:32Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:22:32Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:22:3201:22:32compile:
01:22:32no-op
01:22:3201:22:32package:
01:22:32Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
01:22:3301:22:33install:
01:22:33:: delivering :: omero#omero_client;working@db631b687d0c :: 5.6.3-552-0e25b866b5-ice36-b396 :: integration :: Tue Apr 29 01:22:04 UTC 2025
01:22:33 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
01:22:33:: publishing :: omero#omero_client
01:22:33 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-552-0e25b866b5-ice36-b396/omero_client-5.6.3-552-0e25b866b5-ice36-b396.jar
01:22:33 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-552-0e25b866b5-ice36-b396/omero_client-5.6.3-552-0e25b866b5-ice36-b396.xml
01:22:33Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:22:33Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:22:3301:22:33retrieve:
01:22:33:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:22:33:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:22:34Entering /home/omero/workspace/OMERO-build/src/components/tools...
01:22:3401:22:34dist:
01:22:34Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
01:22:34Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
01:22:34Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
01:22:34Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
01:22:34Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
01:22:34Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
01:22:34Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
01:22:34Entering /home/omero/workspace/OMERO-build/src/components/tests...
01:22:34Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
01:22:3401:22:34copy-licenses:
01:22:34Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
01:22:34Created dir: /home/omero/workspace/OMERO-build/src/dist/share
01:22:34Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
01:22:3401:22:34copy-history:
01:22:34Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
01:22:3401:22:34copy-etc:
01:22:34Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
01:22:34Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
01:22:3401:22:34copy-sql:
01:22:34Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
01:22:3901:22:39copy-server:
01:22:39 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
01:22:3901:22:39copy-client:
01:22:39Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
01:22:40 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
01:22:4001:22:40update-version:
01:22:40Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
01:22:4001:22:40create-workdirs:
01:22:40Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
01:22:40Created dir: /home/omero/workspace/OMERO-build/src/dist/var
01:22:4001:22:40copy-luts:
01:22:40Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
01:22:40Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
01:22:4001:22:40test-compile:
01:22:40:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:22:40Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:22:40Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:22:40Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:22:40Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:22:40Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:22:40Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
01:22:40Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:22:4101:22:41testng-init:
01:22:41:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:22:41:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:22:4401:22:43,763 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
01:22:4401:22:43,766 |-INFO in ch.qos.logback.classic.util.ContextInitializer@78682201 - No custom configurators were discovered as a service.
01:22:4401:22:43,766 |-INFO in ch.qos.logback.classic.util.ContextInitializer@78682201 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
01:22:4401:22:43,769 |-INFO in ch.qos.logback.classic.util.ContextInitializer@78682201 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
01:22:4401:22:43,769 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
01:22:4401:22:43,770 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
01:22:4401:22:43,770 |-INFO in ch.qos.logback.classic.util.ContextInitializer@78682201 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
01:22:4401:22:43,770 |-INFO in ch.qos.logback.classic.util.ContextInitializer@78682201 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
01:22:4401:22:43,772 |-INFO in ch.qos.logback.classic.util.ContextInitializer@78682201 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
01:22:4401:22:43,772 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
01:22:4401:22:43,773 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
01:22:4401:22:43,774 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7d7a0e06 - Resource [logback.xml] occurs multiple times on the classpath.
01:22:4401:22:43,774 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7d7a0e06 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
01:22:4401:22:43,774 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7d7a0e06 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
01:22:4401:22:43,968 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
01:22:4401:22:43,968 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
01:22:4401:22:43,987 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
01:22:4401:22:43,989 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2c3f9229 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
01:22:4401:22:43,989 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2c3f9229 - Please move "immediateFlush" property into the enclosing appender.
01:22:4401:22:44,049 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2c3f9229 - Setting the "immediateFlush" property of the enclosing appender to true
01:22:4401:22:44,050 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
01:22:4401:22:44,050 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
01:22:4401:22:44,050 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
01:22:4401:22:44,050 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
01:22:4401:22:44,050 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
01:22:4401:22:44,050 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
01:22:4401:22:44,051 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@abe3a3 - End of configuration.
01:22:4401:22:44,053 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@396ab19d - Registering current configuration as safe fallback point
01:22:4401:22:44,053 |-INFO in ch.qos.logback.classic.util.ContextInitializer@78682201 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 281 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
01:22:4401:22:44lifecycle.test-compile:
01:22:44Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:22:44Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:22:44warning: [options] bootstrap class path not set in conjunction with -source 8
01:22:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:22:45import omero.grid.RawAccessRequest;
01:22:45 ^
01:22:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:22:45import omero.grid.RawAccessRequest;
01:22:45 ^
01:22:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:22:45import omero.grid.RawAccessRequest;
01:22:45 ^
01:22:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
01:22:45import omero.model.ImportJob;
01:22:45 ^
01:22:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:22:45import omero.model.ImportJobI;
01:22:45 ^
01:22:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
01:22:46 IObject link = (IObject) linkClass.newInstance();
01:22:46 ^
01:22:46 where T is a type-variable:
01:22:46 T extends Object declared in class Class
01:22:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
01:22:46 T copy = (T) obj.getClass().newInstance();
01:22:46 ^
01:22:46 where T is a type-variable:
01:22:46 T extends Object declared in class Class
01:22:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:22:46 RawAccessRequest raw = new RawAccessRequest();
01:22:46 ^
01:22:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:22:46 RawAccessRequest raw = new RawAccessRequest();
01:22:46 ^
01:22:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:22:46 raw.repoUuid = legacy.root().getHash().getValue();
01:22:46 ^
01:22:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
01:22:46 raw.command = "rm";
01:22:46 ^
01:22:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
01:22:46 raw.args = Arrays.asList(path);
01:22:46 ^
01:22:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
01:22:47 final IObject link = linkClass.newInstance();
01:22:47 ^
01:22:47 where T is a type-variable:
01:22:47 T extends Object declared in class Class
01:22:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
01:22:47 originalLink.setChild(annotationClass.newInstance());
01:22:47 ^
01:22:47 where T is a type-variable:
01:22:47 T extends Object declared in class Class
01:22:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:22:47 RoiResult r = svc.findByImage(id, new RoiOptions());
01:22:47 ^
01:22:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:22:47 final RawAccessRequest request = new RawAccessRequest();
01:22:47 ^
01:22:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:22:47 final RawAccessRequest request = new RawAccessRequest();
01:22:47 ^
01:22:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:22:47 request.repoUuid = repo.root().getHash().getValue();
01:22:47 ^
01:22:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
01:22:47 request.command = "exists";
01:22:47 ^
01:22:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
01:22:47 request.args = Collections.singletonList(dirPath);
01:22:47 ^
01:22:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:22:47 final RawAccessRequest request = new RawAccessRequest();
01:22:47 ^
01:22:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:22:47 final RawAccessRequest request = new RawAccessRequest();
01:22:47 ^
01:22:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:22:47 request.repoUuid = repo.root().getHash().getValue();
01:22:47 ^
01:22:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
01:22:47 request.command = "exists";
01:22:47 ^
01:22:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
01:22:47 request.args = Collections.singletonList(dirName);
01:22:47 ^
01:22:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
01:22:47 final ImportJob importJob = new ImportJobI();
01:22:47 ^
01:22:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:22:47 final ImportJob importJob = new ImportJobI();
01:22:47 ^
01:22:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
01:22:47 importJob.setImageName(omero.rtypes.rstring(name));
01:22:47 ^
01:22:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
01:22:47 importJob.setImageDescription(omero.rtypes.rstring(desc));
01:22:47 ^
01:22:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:22:47 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:22:47 ^
01:22:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:22:47 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:22:47 ^
01:22:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:22:47 final String savedName = sent.getImageName().getValue().toString();
01:22:47 ^
01:22:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:22:47 final String savedDesc = sent.getImageDescription().getValue().toString();
01:22:47 ^
01:22:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:22:47 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:22:47 ^
01:22:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:22:47 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:22:47 ^
01:22:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:22:47 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
01:22:47 ^
01:22:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:22:47 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
01:22:47 ^
01:22:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:22:48 RoiResult r = svc.findByImage(image.getId().getValue(),
01:22:48 ^
01:22:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:22:48 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:22:48 ^
01:22:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:22:48 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:22:48 ^
01:22:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:22:48 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:22:48 ^
01:22:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:22:48 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:22:48 ^
01:22:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
01:22:48 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
01:22:48 ^
01:22:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:22:48 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:22:48 ^
01:22:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
01:22:48 table = svc.getTable(f.getId().getValue());
01:22:48 ^
01:22:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:22:48 RoiResult r = svc.findByImage(image.getId().getValue(),
01:22:48 ^
01:22:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:22:48 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
01:22:48 ^
01:22:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:22:48 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
01:22:48 ^
01:22:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:22:48 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
01:22:48 ^
01:22:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:22:48 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
01:22:48 ^
01:22:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
01:22:48 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:22:48 ^
01:22:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
01:22:48 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:22:48 ^
01:22:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
01:22:48 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:22:48 ^
01:22:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
01:22:48 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:22:48 ^
01:22:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
01:22:48 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:22:48 ^
01:22:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
01:22:48 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:22:48 ^
01:22:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
01:22:48 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:22:48 ^
01:22:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
01:22:48 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:22:48 ^
01:22:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
01:22:48 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:22:48 ^
01:22:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
01:22:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:22:48 ^
01:22:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
01:22:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:22:48 ^
01:22:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
01:22:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:22:48 ^
01:22:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
01:22:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:22:48 ^
01:22:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
01:22:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:22:48 ^
01:22:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
01:22:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:22:48 ^
01:22:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
01:22:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:22:48 ^
01:22:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
01:22:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:22:48 ^
01:22:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:22:48 svc.getShapeStatsRestricted(
01:22:48 ^
01:22:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:22:48 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
01:22:48 ^
01:22:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:22:48 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:22:48 ^
01:22:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:22:48 request.typesToIgnore = Collections.singletonList("TagAnnotation");
01:22:48 ^
01:22:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:22:48 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
01:22:48 ^
01:22:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:22:48 request.typesToIgnore = Collections.singletonList("Annotation");
01:22:48 ^
01:22:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:22:48 request.typesToIgnore = Collections.singletonList("Annotation");
01:22:48 ^
01:22:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:22:48 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:22:48 ^
01:22:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:22:48 p2.setRelatedTo(p1);
01:22:48 ^
01:22:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:22:48 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
01:22:48 ^
01:22:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:22:48 pixels1.setRelatedTo(pixels2);
01:22:48 ^
01:22:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:22:48 Pixels pixels = pixels1.getRelatedTo();
01:22:48 ^
01:22:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:22:48 Assert.assertNull(pixels1.getRelatedTo());
01:22:48 ^
01:22:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:22:48 pixels1.setRelatedTo(pixels2);
01:22:48 ^
01:22:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:22:48 Pixels pixels = pixels1.getRelatedTo();
01:22:48 ^
01:22:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:22:48 Assert.assertNull(pixels1.getRelatedTo());
01:22:48 ^
01:22:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:22:48 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:22:48 ^
01:22:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:22:48 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:22:48 ^
01:22:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:22:48 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:22:48 ^
01:22:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:22:48 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:22:48 ^
01:22:48Note: Some input files use unchecked or unsafe operations.
01:22:48Note: Recompile with -Xlint:unchecked for details.
01:22:4888 warnings
01:22:49Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1301022183.tmp
01:22:49Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
01:22:49:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:22:49:: delivering :: omero#OmeroJava-test;working@db631b687d0c :: 5.6.3-552-0e25b866b5-ice36-b396 :: integration :: Tue Apr 29 01:22:40 UTC 2025
01:22:49 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
01:22:49:: publishing :: omero#OmeroJava-test
01:22:49 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-552-0e25b866b5-ice36-b396.jar
01:22:49 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-552-0e25b866b5-ice36-b396.xml
01:22:4901:22:49build-eclipse:
01:22:49No sub-builds to iterate on
01:22:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:22:4901:22:49retrieve:
01:22:49:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:22:49:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:22:5301:22:53prepare:
01:22:53Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
01:22:5401:22:54release-clients:
01:22:54Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-552-0e25b866b5-ice36-b396.zip
01:23:0101:23:01release-zip:
01:23:01Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-552-0e25b866b5-ice36-b396.zip
01:23:1401:23:14BUILD SUCCESSFUL
01:23:14Total time: 1 minute 13 seconds
01:23:14++ '[' -d .git ']'
01:23:14++ python3 ./build.py release-src
01:23:15Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
01:23:1501:23:15release-src-git:
01:23:15Releasing openmicroscopy-5.6.3-552-0e25b866b5-ice36-b396
01:23:16 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-552-0e25b866b5-ice36-b396.zip
01:23:16 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-552-0e25b866b5-ice36-b396-base.zip
01:23:1801:23:18BUILD SUCCESSFUL
01:23:18Total time: 3 seconds
01:23:18++ echo BUILD_NUMBER=396
01:23:18++ echo OMERO_BRANCH=merge_ci
01:23:18++ git_info
01:23:18+++ git rev-parse HEAD
01:23:18++ HEAD=0e25b866b5d8438205900870b47fe8dc9470a715
01:23:18++ git log --max-count=1 0e25b866b5d8438205900870b47fe8dc9470a715
01:23:18++ env
01:23:18++ sort
01:23:18Archiving artifacts
01:23:47Finished: SUCCESS
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