17:24:25Started by upstream project "Trigger" build number 48617:24:25originally caused by:
17:24:25 Started by user devspace17:24:25 Restarted from build #485, stage OMERO Jars
17:24:25Running as SYSTEM
17:24:25Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
17:24:25The recommended git tool is: NONE
17:24:25No credentials specified
17:24:25 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
17:24:25Fetching changes from the remote Git repository
17:24:25 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
17:24:25Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git17:24:25 > git --version # timeout=10
17:24:25 > git --version # 'git version 2.43.5'
17:24:25 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
17:24:27 > git rev-parse origin/merge_ci^{commit} # timeout=10
17:24:27Checking out Revision 8af22b1ca384e6a4da8c828cf83de91e2b80c88f (origin/merge_ci)
17:24:27 > git config core.sparsecheckout # timeout=10
17:24:27 > git checkout -f 8af22b1ca384e6a4da8c828cf83de91e2b80c88f # timeout=10
17:24:27Commit message: "Add version.properties to etc/omero.properties"
17:24:27 > git rev-list --no-walk 393fd5256d687311e5d9cbd36a2cda42349184c1 # timeout=10
17:24:27Cleaning workspace
17:24:27 > git rev-parse --verify HEAD # timeout=10
17:24:27Resetting working tree
17:24:27 > git reset --hard # timeout=10
17:24:27 > git clean -fdx # timeout=10
17:24:28Copied 6 artifacts from "OMERO-python-superbuild-build" build number 41217:24:28[OMERO-build] $ /bin/bash -xe /tmp/jenkins15875608613183734238.sh
17:24:28+ mv omero-scripts/dist/omero_scripts-5.9.1.dev0.tar.gz .
17:24:28+ cd src
17:24:28+ export OMERO_BRANCH=merge_ci
17:24:28+ OMERO_BRANCH=merge_ci
17:24:28+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
17:24:28+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
17:24:28+ source /home/omero/settings.env
17:24:28++ OMERO_DB_HOST=pg
17:24:28++ OMERO_DB_USER=postgres
17:24:28++ OMERO_DB_PASS=
17:24:28++ OMERO_ROOT_PASS=omero
17:24:28++ OMERO_DATA_DIR=/OMERO
17:24:28++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
17:24:28+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
17:24:32+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl17:24:32Collecting zeroc-ice==3.6.5
17:24:33 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
17:24:35 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 19.6 MB/s eta 0:00:00
17:24:35Installing collected packages: zeroc-ice
17:24:36Successfully installed zeroc-ice-3.6.5
17:24:3617:24:36[notice] A new release of pip available: 22.3.1 -> 25.1.1
17:24:36[notice] To update, run: python3.11 -m pip install --upgrade pip
17:24:36+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
17:24:36Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
17:24:36Collecting setuptools<66
17:24:36 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
17:24:37Collecting omero-py
17:24:37 Using cached omero_py-5.20.0-py3-none-any.whl (2.8 MB)
17:24:37Collecting urllib3<2
17:24:37 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
17:24:37Collecting appdirs
17:24:37 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
17:24:37Collecting future
17:24:37 Using cached future-1.0.0-py3-none-any.whl (491 kB)
17:24:37Collecting numpy<3
17:24:37 Using cached numpy-2.2.6-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (16.8 MB)
17:24:38Collecting Pillow>=10.0.0
17:24:38 Using cached pillow-11.2.1-cp311-cp311-manylinux_2_28_x86_64.whl (4.6 MB)
17:24:39Collecting PyYAML
17:24:39 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB)
17:24:39Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
17:24:39Collecting requests
17:24:39 Using cached requests-2.32.3-py3-none-any.whl (64 kB)
17:24:39Collecting portalocker
17:24:39 Using cached portalocker-3.1.1-py3-none-any.whl (19 kB)
17:24:39Collecting charset-normalizer<4,>=2
17:24:39 Using cached charset_normalizer-3.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (147 kB)
17:24:39Collecting idna<4,>=2.5
17:24:39 Using cached idna-3.10-py3-none-any.whl (70 kB)
17:24:39Collecting certifi>=2017.4.17
17:24:39 Using cached certifi-2025.4.26-py3-none-any.whl (159 kB)
17:24:39Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset-normalizer, certifi, requests, omero-py
17:24:39 Attempting uninstall: setuptools
17:24:39 Found existing installation: setuptools 65.5.1
17:24:40 Uninstalling setuptools-65.5.1:
17:24:40 Successfully uninstalled setuptools-65.5.1
17:24:45Successfully installed Pillow-11.2.1 PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.4.26 charset-normalizer-3.4.2 future-1.0.0 idna-3.10 numpy-2.2.6 omero-py-5.20.0 portalocker-3.1.1 requests-2.32.3 setuptools-65.7.0 urllib3-1.26.20
17:24:4517:24:45[notice] A new release of pip available: 22.3.1 -> 25.1.1
17:24:45[notice] To update, run: python3.11 -m pip install --upgrade pip
17:24:45+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
17:24:45++ deactivate nondestructive
17:24:45++ '[' -n '' ']'
17:24:45++ '[' -n '' ']'
17:24:45++ hash -r
17:24:45++ '[' -n '' ']'
17:24:45++ unset VIRTUAL_ENV
17:24:45++ unset VIRTUAL_ENV_PROMPT
17:24:45++ '[' '!' nondestructive = nondestructive ']'
17:24:45++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
17:24:45++ export VIRTUAL_ENV
17:24:45++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
17:24:45++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
17:24:45++ export PATH
17:24:45++ '[' -n '' ']'
17:24:45++ '[' -z '' ']'
17:24:45++ _OLD_VIRTUAL_PS1=
17:24:45++ PS1='(omero-virtualenv) '
17:24:45++ export PS1
17:24:45++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
17:24:45++ export VIRTUAL_ENV_PROMPT
17:24:45++ hash -r
17:24:45+ source docs/hudson/OMERO.sh
17:24:45++ set -e
17:24:45++ set -u
17:24:45++ set -x
17:24:45++ source docs/hudson/functions.sh
17:24:45++ echo Building merge_ci
17:24:45Building merge_ci
17:24:45++ python3 ./build.py build-dev release-all
17:24:46Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
17:24:4617:24:46check-ivy:
17:24:46Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
17:24:46Created dir: /home/omero/workspace/OMERO-build/src/target
17:24:46:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
17:24:46:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
17:24:4717:24:47build-scons:
17:24:47Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
17:24:47No sub-builds to iterate on
17:24:47Entering /home/omero/workspace/OMERO-build/src/components/tools...
17:24:4717:24:47buildlist:
17:24:47:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
17:24:47:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
17:24:4717:24:47clean:
17:24:47Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
17:24:48Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
17:24:4817:24:48python-clean:
17:24:48WARNING: '' not a valid package name; please use only .-separated package names in setup.py
17:24:48/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-8af22b1ca3-ice36-b420') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
17:24:48 warnings.warn(
17:24:48running clean
17:24:48Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
17:24:48Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
17:24:4817:24:48python-clean:
17:24:48WARNING: '' not a valid package name; please use only .-separated package names in setup.py
17:24:48/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-8af22b1ca3-ice36-b420') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
17:24:48 warnings.warn(
17:24:48running clean
17:24:48Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
17:24:48Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
17:24:48Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
17:24:48Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
17:24:4917:24:49python-clean:
17:24:49WARNING: '' not a valid package name; please use only .-separated package names in setup.py
17:24:49/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-8af22b1ca3-ice36-b420') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
17:24:49 warnings.warn(
17:24:49running clean
17:24:49Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
17:24:49Deleting directory /home/omero/workspace/OMERO-build/src/target
17:24:4917:24:49build-scons:
17:24:49Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
17:24:4917:24:49build:
17:24:49No sub-builds to iterate on
17:24:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
17:24:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
17:24:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
17:24:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
17:24:4917:24:49tools-init:
17:24:49no-op
17:24:4917:24:49retrieve:
17:24:49:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
17:24:49:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
17:24:50WARNING: An illegal reflective access operation has occurred
17:24:50WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
17:24:50WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
17:24:50WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
17:24:50WARNING: All illegal access operations will be denied in a future release
17:25:3417:25:34prepare:
17:25:34Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
17:25:34Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
17:25:34Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
17:25:34Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
17:25:34Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
17:25:34Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
17:25:34Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
17:25:34Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
17:25:34Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
17:25:34Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
17:25:34Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
17:25:34Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
17:25:34Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
17:25:34Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
17:25:34Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
17:25:3417:25:34pre-compile:
17:25:34Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
17:25:34Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
17:25:34Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
17:25:34Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
17:25:34Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
17:25:3417:25:34compile:
17:25:34no-op
17:25:3417:25:34package:
17:25:34Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
17:25:3517:25:35install:
17:25:35:: delivering :: omero#omero_client;working@db631b687d0c :: 5.6.3-552-8af22b1ca3-ice36-b420 :: integration :: Mon May 19 17:24:49 UTC 2025
17:25:35 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
17:25:35:: publishing :: omero#omero_client
17:25:35 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-552-8af22b1ca3-ice36-b420/omero_client-5.6.3-552-8af22b1ca3-ice36-b420.jar
17:25:35 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-552-8af22b1ca3-ice36-b420/omero_client-5.6.3-552-8af22b1ca3-ice36-b420.xml
17:25:35Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
17:25:35Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
17:25:3517:25:35retrieve:
17:25:35:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
17:25:35:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
17:25:36Entering /home/omero/workspace/OMERO-build/src/components/tools...
17:25:3617:25:36dist:
17:25:36Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
17:25:36Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
17:25:36Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
17:25:36Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
17:25:36Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
17:25:36Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
17:25:36Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
17:25:36Entering /home/omero/workspace/OMERO-build/src/components/tests...
17:25:36Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
17:25:3617:25:36copy-licenses:
17:25:36Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
17:25:36Created dir: /home/omero/workspace/OMERO-build/src/dist/share
17:25:36Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
17:25:3617:25:36copy-history:
17:25:36Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
17:25:3617:25:36copy-etc:
17:25:36Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
17:25:36Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
17:25:3617:25:36copy-sql:
17:25:36Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
17:25:4317:25:43copy-server:
17:25:43 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
17:25:4317:25:43copy-client:
17:25:43Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
17:25:44 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
17:25:4417:25:44update-version:
17:25:44Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
17:25:4417:25:44create-workdirs:
17:25:44Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
17:25:44Created dir: /home/omero/workspace/OMERO-build/src/dist/var
17:25:4417:25:44copy-luts:
17:25:44Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
17:25:44Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
17:25:4517:25:45test-compile:
17:25:45:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
17:25:45Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
17:25:45Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
17:25:45Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
17:25:45Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
17:25:45Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
17:25:45Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
17:25:45Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
17:25:4517:25:45testng-init:
17:25:45:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
17:25:45:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
17:25:4817:25:48,372 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
17:25:4817:25:48,375 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3ae2721b - No custom configurators were discovered as a service.
17:25:4817:25:48,375 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3ae2721b - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
17:25:4817:25:48,378 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3ae2721b - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
17:25:4817:25:48,379 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
17:25:4817:25:48,379 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
17:25:4817:25:48,380 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3ae2721b - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
17:25:4817:25:48,380 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3ae2721b - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
17:25:4817:25:48,381 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3ae2721b - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
17:25:4817:25:48,382 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
17:25:4817:25:48,382 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
17:25:4817:25:48,383 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@3065a6ee - Resource [logback.xml] occurs multiple times on the classpath.
17:25:4817:25:48,383 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@3065a6ee - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
17:25:4817:25:48,383 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@3065a6ee - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
17:25:4817:25:48,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
17:25:4817:25:48,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
17:25:4817:25:48,610 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
17:25:4817:25:48,612 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7d2fc711 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
17:25:4817:25:48,612 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7d2fc711 - Please move "immediateFlush" property into the enclosing appender.
17:25:4817:25:48,674 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7d2fc711 - Setting the "immediateFlush" property of the enclosing appender to true
17:25:4817:25:48,675 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
17:25:4817:25:48,675 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
17:25:4817:25:48,675 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
17:25:4817:25:48,675 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
17:25:4817:25:48,675 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
17:25:4817:25:48,675 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
17:25:4817:25:48,676 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@a741f59 - End of configuration.
17:25:4817:25:48,678 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@232fc6a6 - Registering current configuration as safe fallback point
17:25:4817:25:48,678 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3ae2721b - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 297 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
17:25:4817:25:48lifecycle.test-compile:
17:25:48Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
17:25:48Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
17:25:49warning: [options] bootstrap class path not set in conjunction with -source 8
17:25:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
17:25:50import omero.grid.RawAccessRequest;
17:25:50 ^
17:25:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
17:25:50import omero.grid.RawAccessRequest;
17:25:50 ^
17:25:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
17:25:50import omero.grid.RawAccessRequest;
17:25:50 ^
17:25:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
17:25:50import omero.model.ImportJob;
17:25:50 ^
17:25:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
17:25:50import omero.model.ImportJobI;
17:25:50 ^
17:25:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
17:25:51 IObject link = (IObject) linkClass.newInstance();
17:25:51 ^
17:25:51 where T is a type-variable:
17:25:51 T extends Object declared in class Class
17:25:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
17:25:51 T copy = (T) obj.getClass().newInstance();
17:25:51 ^
17:25:51 where T is a type-variable:
17:25:51 T extends Object declared in class Class
17:25:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
17:25:51 RawAccessRequest raw = new RawAccessRequest();
17:25:51 ^
17:25:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
17:25:51 RawAccessRequest raw = new RawAccessRequest();
17:25:51 ^
17:25:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
17:25:51 raw.repoUuid = legacy.root().getHash().getValue();
17:25:51 ^
17:25:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
17:25:51 raw.command = "rm";
17:25:51 ^
17:25:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
17:25:51 raw.args = Arrays.asList(path);
17:25:51 ^
17:25:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
17:25:51 final IObject link = linkClass.newInstance();
17:25:51 ^
17:25:51 where T is a type-variable:
17:25:51 T extends Object declared in class Class
17:25:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
17:25:51 originalLink.setChild(annotationClass.newInstance());
17:25:51 ^
17:25:51 where T is a type-variable:
17:25:51 T extends Object declared in class Class
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
17:25:52 RoiResult r = svc.findByImage(id, new RoiOptions());
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
17:25:52 final RawAccessRequest request = new RawAccessRequest();
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
17:25:52 final RawAccessRequest request = new RawAccessRequest();
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
17:25:52 request.repoUuid = repo.root().getHash().getValue();
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
17:25:52 request.command = "exists";
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
17:25:52 request.args = Collections.singletonList(dirPath);
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
17:25:52 final RawAccessRequest request = new RawAccessRequest();
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
17:25:52 final RawAccessRequest request = new RawAccessRequest();
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
17:25:52 request.repoUuid = repo.root().getHash().getValue();
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
17:25:52 request.command = "exists";
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
17:25:52 request.args = Collections.singletonList(dirName);
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
17:25:52 final ImportJob importJob = new ImportJobI();
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
17:25:52 final ImportJob importJob = new ImportJobI();
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
17:25:52 importJob.setImageName(omero.rtypes.rstring(name));
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
17:25:52 importJob.setImageDescription(omero.rtypes.rstring(desc));
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
17:25:52 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
17:25:52 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
17:25:52 final String savedName = sent.getImageName().getValue().toString();
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
17:25:52 final String savedDesc = sent.getImageDescription().getValue().toString();
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
17:25:52 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
17:25:52 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
17:25:52 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
17:25:52 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
17:25:52 RoiResult r = svc.findByImage(image.getId().getValue(),
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
17:25:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
17:25:52 l = svc.getRoiMeasurements(image.getId().getValue(), options);
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
17:25:52 l = svc.getRoiMeasurements(image.getId().getValue(), options);
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
17:25:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
17:25:52 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
17:25:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
17:25:52 table = svc.getTable(f.getId().getValue());
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
17:25:52 RoiResult r = svc.findByImage(image.getId().getValue(),
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
17:25:52 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
17:25:52 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
17:25:52 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
17:25:52 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
17:25:52 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
17:25:52 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
17:25:52 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
17:25:52 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
17:25:52 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
17:25:52 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
17:25:52 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
17:25:52 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
17:25:52 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
17:25:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
17:25:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
17:25:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
17:25:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
17:25:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
17:25:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
17:25:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
17:25:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
17:25:52 svc.getShapeStatsRestricted(
17:25:52 ^
17:25:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
17:25:52 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
17:25:52 ^
17:25:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
17:25:53 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
17:25:53 ^
17:25:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
17:25:53 request.typesToIgnore = Collections.singletonList("TagAnnotation");
17:25:53 ^
17:25:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
17:25:53 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
17:25:53 ^
17:25:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
17:25:53 request.typesToIgnore = Collections.singletonList("Annotation");
17:25:53 ^
17:25:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
17:25:53 request.typesToIgnore = Collections.singletonList("Annotation");
17:25:53 ^
17:25:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
17:25:53 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
17:25:53 ^
17:25:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
17:25:53 p2.setRelatedTo(p1);
17:25:53 ^
17:25:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
17:25:53 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
17:25:53 ^
17:25:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
17:25:53 pixels1.setRelatedTo(pixels2);
17:25:53 ^
17:25:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
17:25:53 Pixels pixels = pixels1.getRelatedTo();
17:25:53 ^
17:25:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
17:25:53 Assert.assertNull(pixels1.getRelatedTo());
17:25:53 ^
17:25:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
17:25:53 pixels1.setRelatedTo(pixels2);
17:25:53 ^
17:25:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
17:25:53 Pixels pixels = pixels1.getRelatedTo();
17:25:53 ^
17:25:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
17:25:53 Assert.assertNull(pixels1.getRelatedTo());
17:25:53 ^
17:25:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
17:25:53 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
17:25:53 ^
17:25:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
17:25:53 l = svc.getRoiMeasurements(image.getId().getValue(), options);
17:25:53 ^
17:25:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
17:25:53 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
17:25:53 ^
17:25:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
17:25:53 l = svc.getRoiMeasurements(image.getId().getValue(), options);
17:25:53 ^
17:25:53Note: Some input files use unchecked or unsafe operations.
17:25:53Note: Recompile with -Xlint:unchecked for details.
17:25:5388 warnings
17:25:53Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1683933248.tmp
17:25:53Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
17:25:53:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
17:25:53:: delivering :: omero#OmeroJava-test;working@db631b687d0c :: 5.6.3-552-8af22b1ca3-ice36-b420 :: integration :: Mon May 19 17:25:45 UTC 2025
17:25:53 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
17:25:53:: publishing :: omero#OmeroJava-test
17:25:53 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-552-8af22b1ca3-ice36-b420.jar
17:25:53 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-552-8af22b1ca3-ice36-b420.xml
17:25:5317:25:53build-eclipse:
17:25:53No sub-builds to iterate on
17:25:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
17:25:5417:25:54retrieve:
17:25:54:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
17:25:54:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
17:25:5817:25:58prepare:
17:25:58Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
17:25:5917:25:59release-clients:
17:25:59Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-552-8af22b1ca3-ice36-b420.zip
17:26:0417:26:04release-zip:
17:26:04Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-552-8af22b1ca3-ice36-b420.zip
17:26:1517:26:15BUILD SUCCESSFUL
17:26:15Total time: 1 minute 29 seconds
17:26:15++ '[' -d .git ']'
17:26:15++ python3 ./build.py release-src
17:26:15Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
17:26:1617:26:16release-src-git:
17:26:16Releasing openmicroscopy-5.6.3-552-8af22b1ca3-ice36-b420
17:26:18 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-552-8af22b1ca3-ice36-b420.zip
17:26:18 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-552-8af22b1ca3-ice36-b420-base.zip
17:26:1917:26:19BUILD SUCCESSFUL
17:26:19Total time: 4 seconds
17:26:19++ echo BUILD_NUMBER=420
17:26:19++ echo OMERO_BRANCH=merge_ci
17:26:19++ git_info
17:26:19+++ git rev-parse HEAD
17:26:19++ HEAD=8af22b1ca384e6a4da8c828cf83de91e2b80c88f
17:26:19++ git log --max-count=1 8af22b1ca384e6a4da8c828cf83de91e2b80c88f
17:26:19++ env
17:26:19++ sort
17:26:20Archiving artifacts
17:26:43Finished: SUCCESS
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