06:01:08Started by upstream project "Trigger" build number 49306:01:08originally caused by:
06:01:08 Started by user devspace06:01:08 Restarted from build #492, stage OMERO Jars
06:01:08Running as SYSTEM
06:01:08Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
06:01:08The recommended git tool is: NONE
06:01:08No credentials specified
06:01:08 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
06:01:08Fetching changes from the remote Git repository
06:01:08 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
06:01:08Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git06:01:08 > git --version # timeout=10
06:01:08 > git --version # 'git version 2.43.5'
06:01:08 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
06:01:09 > git rev-parse origin/merge_ci^{commit} # timeout=10
06:01:09Checking out Revision 050aa06f48775d7666b579eef882c586a1a0d74e (origin/merge_ci)
06:01:09 > git config core.sparsecheckout # timeout=10
06:01:09 > git checkout -f 050aa06f48775d7666b579eef882c586a1a0d74e # timeout=10
06:01:09Commit message: "Add version.properties to etc/omero.properties"
06:01:09 > git rev-list --no-walk 4d0fbe8529c1dc022a929405e33538c45df6ec5e # timeout=10
06:01:09Cleaning workspace
06:01:09 > git rev-parse --verify HEAD # timeout=10
06:01:09Resetting working tree
06:01:09 > git reset --hard # timeout=10
06:01:09 > git clean -fdx # timeout=10
06:01:09Copied 6 artifacts from "OMERO-python-superbuild-build" build number 41606:01:09[OMERO-build] $ /bin/bash -xe /tmp/jenkins1446253550886634533.sh
06:01:09+ mv omero-scripts/dist/omero_scripts-5.9.1.dev0.tar.gz .
06:01:09+ cd src
06:01:09+ export OMERO_BRANCH=merge_ci
06:01:09+ OMERO_BRANCH=merge_ci
06:01:09+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
06:01:09+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
06:01:09+ source /home/omero/settings.env
06:01:09++ OMERO_DB_HOST=pg
06:01:09++ OMERO_DB_USER=postgres
06:01:09++ OMERO_DB_PASS=
06:01:09++ OMERO_ROOT_PASS=omero
06:01:09++ OMERO_DATA_DIR=/OMERO
06:01:09++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
06:01:09+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
06:01:13+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl06:01:13Collecting zeroc-ice==3.6.5
06:01:14 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
06:01:16 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 19.5 MB/s eta 0:00:00
06:01:16Installing collected packages: zeroc-ice
06:01:17Successfully installed zeroc-ice-3.6.5
06:01:1706:01:17[notice] A new release of pip available: 22.3.1 -> 25.1.1
06:01:17[notice] To update, run: python3.11 -m pip install --upgrade pip
06:01:17+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
06:01:17Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
06:01:17Collecting setuptools<66
06:01:17 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
06:01:17Collecting omero-py
06:01:17 Using cached omero_py-5.20.0-py3-none-any.whl (2.8 MB)
06:01:18Collecting urllib3<2
06:01:18 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
06:01:18Collecting appdirs
06:01:18 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
06:01:18Collecting future
06:01:18 Using cached future-1.0.0-py3-none-any.whl (491 kB)
06:01:18Collecting numpy<3
06:01:18 Using cached numpy-2.2.6-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (16.8 MB)
06:01:19Collecting Pillow>=10.0.0
06:01:19 Using cached pillow-11.2.1-cp311-cp311-manylinux_2_28_x86_64.whl (4.6 MB)
06:01:19Collecting PyYAML
06:01:19 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB)
06:01:19Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
06:01:19Collecting requests
06:01:19 Using cached requests-2.32.3-py3-none-any.whl (64 kB)
06:01:19Collecting portalocker
06:01:19 Using cached portalocker-3.1.1-py3-none-any.whl (19 kB)
06:01:19Collecting charset-normalizer<4,>=2
06:01:19 Using cached charset_normalizer-3.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (147 kB)
06:01:19Collecting idna<4,>=2.5
06:01:19 Using cached idna-3.10-py3-none-any.whl (70 kB)
06:01:19Collecting certifi>=2017.4.17
06:01:19 Using cached certifi-2025.4.26-py3-none-any.whl (159 kB)
06:01:19Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset-normalizer, certifi, requests, omero-py
06:01:19 Attempting uninstall: setuptools
06:01:19 Found existing installation: setuptools 65.5.1
06:01:19 Uninstalling setuptools-65.5.1:
06:01:19 Successfully uninstalled setuptools-65.5.1
06:01:25Successfully installed Pillow-11.2.1 PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.4.26 charset-normalizer-3.4.2 future-1.0.0 idna-3.10 numpy-2.2.6 omero-py-5.20.0 portalocker-3.1.1 requests-2.32.3 setuptools-65.7.0 urllib3-1.26.20
06:01:2506:01:25[notice] A new release of pip available: 22.3.1 -> 25.1.1
06:01:25[notice] To update, run: python3.11 -m pip install --upgrade pip
06:01:25+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
06:01:25++ deactivate nondestructive
06:01:25++ '[' -n '' ']'
06:01:25++ '[' -n '' ']'
06:01:25++ hash -r
06:01:25++ '[' -n '' ']'
06:01:25++ unset VIRTUAL_ENV
06:01:25++ unset VIRTUAL_ENV_PROMPT
06:01:25++ '[' '!' nondestructive = nondestructive ']'
06:01:25++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
06:01:25++ export VIRTUAL_ENV
06:01:25++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
06:01:25++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
06:01:25++ export PATH
06:01:25++ '[' -n '' ']'
06:01:25++ '[' -z '' ']'
06:01:25++ _OLD_VIRTUAL_PS1=
06:01:25++ PS1='(omero-virtualenv) '
06:01:25++ export PS1
06:01:25++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
06:01:25++ export VIRTUAL_ENV_PROMPT
06:01:25++ hash -r
06:01:25+ source docs/hudson/OMERO.sh
06:01:25++ set -e
06:01:25++ set -u
06:01:25++ set -x
06:01:25++ source docs/hudson/functions.sh
06:01:25++ echo Building merge_ci
06:01:25Building merge_ci
06:01:25++ python3 ./build.py build-dev release-all
06:01:25Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
06:01:2606:01:26check-ivy:
06:01:26Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
06:01:26Created dir: /home/omero/workspace/OMERO-build/src/target
06:01:26:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
06:01:26:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
06:01:2606:01:26build-scons:
06:01:26Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
06:01:26No sub-builds to iterate on
06:01:27Entering /home/omero/workspace/OMERO-build/src/components/tools...
06:01:2706:01:27buildlist:
06:01:27:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
06:01:27:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
06:01:2706:01:27clean:
06:01:27Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
06:01:27Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
06:01:2706:01:27python-clean:
06:01:27WARNING: '' not a valid package name; please use only .-separated package names in setup.py
06:01:27/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-050aa06f48-ice36-b424') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
06:01:27 warnings.warn(
06:01:27running clean
06:01:27Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
06:01:27Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
06:01:2806:01:28python-clean:
06:01:28WARNING: '' not a valid package name; please use only .-separated package names in setup.py
06:01:28/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-050aa06f48-ice36-b424') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
06:01:28 warnings.warn(
06:01:28running clean
06:01:28Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
06:01:28Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
06:01:28Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
06:01:28Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
06:01:2806:01:28python-clean:
06:01:28WARNING: '' not a valid package name; please use only .-separated package names in setup.py
06:01:28/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-050aa06f48-ice36-b424') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
06:01:28 warnings.warn(
06:01:28running clean
06:01:28Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
06:01:28Deleting directory /home/omero/workspace/OMERO-build/src/target
06:01:2806:01:28build-scons:
06:01:28Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
06:01:2806:01:28build:
06:01:28No sub-builds to iterate on
06:01:28Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
06:01:28Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
06:01:28Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
06:01:28Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
06:01:2806:01:28tools-init:
06:01:28no-op
06:01:2906:01:29retrieve:
06:01:29:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
06:01:29:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
06:01:29WARNING: An illegal reflective access operation has occurred
06:01:29WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
06:01:29WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
06:01:29WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
06:01:29WARNING: All illegal access operations will be denied in a future release
06:02:0806:02:08prepare:
06:02:08Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
06:02:08Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
06:02:08Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
06:02:08Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
06:02:08Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
06:02:08Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
06:02:08Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
06:02:08Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
06:02:08Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
06:02:08Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
06:02:08Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
06:02:08Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
06:02:08Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
06:02:08Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
06:02:08Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
06:02:0806:02:08pre-compile:
06:02:08Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
06:02:08Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
06:02:08Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
06:02:08Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
06:02:08Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
06:02:0806:02:08compile:
06:02:08no-op
06:02:0806:02:08package:
06:02:08Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
06:02:0906:02:09install:
06:02:09:: delivering :: omero#omero_client;working@db631b687d0c :: 5.6.3-552-050aa06f48-ice36-b424 :: integration :: Sun May 25 06:01:28 UTC 2025
06:02:09 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
06:02:09:: publishing :: omero#omero_client
06:02:09 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-552-050aa06f48-ice36-b424/omero_client-5.6.3-552-050aa06f48-ice36-b424.jar
06:02:09 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-552-050aa06f48-ice36-b424/omero_client-5.6.3-552-050aa06f48-ice36-b424.xml
06:02:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
06:02:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
06:02:0906:02:09retrieve:
06:02:09:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
06:02:10:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
06:02:10Entering /home/omero/workspace/OMERO-build/src/components/tools...
06:02:1006:02:10dist:
06:02:10Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
06:02:10Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
06:02:10Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
06:02:10Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
06:02:10Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
06:02:10Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
06:02:10Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
06:02:10Entering /home/omero/workspace/OMERO-build/src/components/tests...
06:02:10Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
06:02:1006:02:10copy-licenses:
06:02:10Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
06:02:10Created dir: /home/omero/workspace/OMERO-build/src/dist/share
06:02:10Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
06:02:1006:02:10copy-history:
06:02:10Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
06:02:1006:02:10copy-etc:
06:02:10Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
06:02:10Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
06:02:1006:02:10copy-sql:
06:02:10Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
06:02:1506:02:15copy-server:
06:02:15 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
06:02:1506:02:15copy-client:
06:02:15Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
06:02:16 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
06:02:1606:02:16update-version:
06:02:16Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
06:02:1606:02:16create-workdirs:
06:02:16Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
06:02:16Created dir: /home/omero/workspace/OMERO-build/src/dist/var
06:02:1606:02:16copy-luts:
06:02:16Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
06:02:16Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
06:02:1606:02:16test-compile:
06:02:16:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
06:02:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
06:02:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
06:02:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
06:02:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
06:02:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
06:02:16Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
06:02:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
06:02:1706:02:17testng-init:
06:02:17:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
06:02:17:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
06:02:1906:02:19,671 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
06:02:1906:02:19,674 |-INFO in ch.qos.logback.classic.util.ContextInitializer@8742b32 - No custom configurators were discovered as a service.
06:02:1906:02:19,674 |-INFO in ch.qos.logback.classic.util.ContextInitializer@8742b32 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
06:02:1906:02:19,677 |-INFO in ch.qos.logback.classic.util.ContextInitializer@8742b32 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
06:02:1906:02:19,678 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
06:02:1906:02:19,678 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
06:02:1906:02:19,679 |-INFO in ch.qos.logback.classic.util.ContextInitializer@8742b32 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
06:02:1906:02:19,679 |-INFO in ch.qos.logback.classic.util.ContextInitializer@8742b32 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
06:02:1906:02:19,680 |-INFO in ch.qos.logback.classic.util.ContextInitializer@8742b32 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
06:02:1906:02:19,681 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
06:02:1906:02:19,681 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
06:02:1906:02:19,682 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@38dfbd6e - Resource [logback.xml] occurs multiple times on the classpath.
06:02:1906:02:19,682 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@38dfbd6e - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
06:02:1906:02:19,682 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@38dfbd6e - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
06:02:1906:02:19,889 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
06:02:1906:02:19,889 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
06:02:1906:02:19,908 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
06:02:1906:02:19,910 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5aa345a5 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
06:02:1906:02:19,910 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5aa345a5 - Please move "immediateFlush" property into the enclosing appender.
06:02:1906:02:19,971 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5aa345a5 - Setting the "immediateFlush" property of the enclosing appender to true
06:02:1906:02:19,972 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
06:02:1906:02:19,972 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
06:02:1906:02:19,972 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
06:02:1906:02:19,972 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
06:02:1906:02:19,972 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
06:02:1906:02:19,972 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
06:02:1906:02:19,974 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3330bdd1 - End of configuration.
06:02:1906:02:19,976 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@1a343d3e - Registering current configuration as safe fallback point
06:02:1906:02:19,976 |-INFO in ch.qos.logback.classic.util.ContextInitializer@8742b32 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 296 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
06:02:1906:02:19lifecycle.test-compile:
06:02:19Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
06:02:20Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
06:02:20warning: [options] bootstrap class path not set in conjunction with -source 8
06:02:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
06:02:21import omero.grid.RawAccessRequest;
06:02:21 ^
06:02:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
06:02:21import omero.grid.RawAccessRequest;
06:02:21 ^
06:02:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
06:02:21import omero.grid.RawAccessRequest;
06:02:21 ^
06:02:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
06:02:21import omero.model.ImportJob;
06:02:21 ^
06:02:21/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
06:02:21import omero.model.ImportJobI;
06:02:21 ^
06:02:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
06:02:22 IObject link = (IObject) linkClass.newInstance();
06:02:22 ^
06:02:22 where T is a type-variable:
06:02:22 T extends Object declared in class Class
06:02:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
06:02:22 T copy = (T) obj.getClass().newInstance();
06:02:22 ^
06:02:22 where T is a type-variable:
06:02:22 T extends Object declared in class Class
06:02:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
06:02:22 RawAccessRequest raw = new RawAccessRequest();
06:02:22 ^
06:02:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
06:02:22 RawAccessRequest raw = new RawAccessRequest();
06:02:22 ^
06:02:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
06:02:22 raw.repoUuid = legacy.root().getHash().getValue();
06:02:22 ^
06:02:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
06:02:22 raw.command = "rm";
06:02:22 ^
06:02:22/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
06:02:22 raw.args = Arrays.asList(path);
06:02:22 ^
06:02:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
06:02:23 final IObject link = linkClass.newInstance();
06:02:23 ^
06:02:23 where T is a type-variable:
06:02:23 T extends Object declared in class Class
06:02:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
06:02:23 originalLink.setChild(annotationClass.newInstance());
06:02:23 ^
06:02:23 where T is a type-variable:
06:02:23 T extends Object declared in class Class
06:02:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
06:02:23 RoiResult r = svc.findByImage(id, new RoiOptions());
06:02:23 ^
06:02:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
06:02:23 final RawAccessRequest request = new RawAccessRequest();
06:02:23 ^
06:02:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
06:02:23 final RawAccessRequest request = new RawAccessRequest();
06:02:23 ^
06:02:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
06:02:23 request.repoUuid = repo.root().getHash().getValue();
06:02:23 ^
06:02:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
06:02:23 request.command = "exists";
06:02:23 ^
06:02:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
06:02:23 request.args = Collections.singletonList(dirPath);
06:02:23 ^
06:02:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
06:02:23 final RawAccessRequest request = new RawAccessRequest();
06:02:23 ^
06:02:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
06:02:23 final RawAccessRequest request = new RawAccessRequest();
06:02:23 ^
06:02:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
06:02:23 request.repoUuid = repo.root().getHash().getValue();
06:02:23 ^
06:02:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
06:02:23 request.command = "exists";
06:02:23 ^
06:02:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
06:02:23 request.args = Collections.singletonList(dirName);
06:02:23 ^
06:02:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
06:02:23 final ImportJob importJob = new ImportJobI();
06:02:23 ^
06:02:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
06:02:23 final ImportJob importJob = new ImportJobI();
06:02:23 ^
06:02:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
06:02:23 importJob.setImageName(omero.rtypes.rstring(name));
06:02:23 ^
06:02:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
06:02:23 importJob.setImageDescription(omero.rtypes.rstring(desc));
06:02:23 ^
06:02:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
06:02:23 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
06:02:23 ^
06:02:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
06:02:23 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
06:02:23 ^
06:02:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
06:02:23 final String savedName = sent.getImageName().getValue().toString();
06:02:23 ^
06:02:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
06:02:23 final String savedDesc = sent.getImageDescription().getValue().toString();
06:02:23 ^
06:02:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
06:02:23 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
06:02:23 ^
06:02:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
06:02:23 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
06:02:23 ^
06:02:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
06:02:23 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
06:02:23 ^
06:02:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
06:02:23 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
06:02:23 ^
06:02:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
06:02:24 RoiResult r = svc.findByImage(image.getId().getValue(),
06:02:24 ^
06:02:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
06:02:24 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
06:02:24 ^
06:02:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
06:02:24 l = svc.getRoiMeasurements(image.getId().getValue(), options);
06:02:24 ^
06:02:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
06:02:24 l = svc.getRoiMeasurements(image.getId().getValue(), options);
06:02:24 ^
06:02:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
06:02:24 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
06:02:24 ^
06:02:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
06:02:24 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
06:02:24 ^
06:02:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
06:02:24 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
06:02:24 ^
06:02:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
06:02:24 table = svc.getTable(f.getId().getValue());
06:02:24 ^
06:02:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
06:02:24 RoiResult r = svc.findByImage(image.getId().getValue(),
06:02:24 ^
06:02:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
06:02:24 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
06:02:24 ^
06:02:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
06:02:24 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
06:02:24 ^
06:02:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
06:02:24 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
06:02:24 ^
06:02:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
06:02:24 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
06:02:24 ^
06:02:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
06:02:24 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
06:02:24 ^
06:02:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
06:02:24 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
06:02:24 ^
06:02:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
06:02:24 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
06:02:24 ^
06:02:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
06:02:24 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
06:02:24 ^
06:02:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
06:02:24 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
06:02:24 ^
06:02:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
06:02:24 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
06:02:24 ^
06:02:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
06:02:24 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
06:02:24 ^
06:02:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
06:02:24 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
06:02:24 ^
06:02:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
06:02:24 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
06:02:24 ^
06:02:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
06:02:24 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
06:02:24 ^
06:02:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
06:02:24 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
06:02:24 ^
06:02:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
06:02:24 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
06:02:24 ^
06:02:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
06:02:24 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
06:02:24 ^
06:02:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
06:02:24 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
06:02:24 ^
06:02:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
06:02:24 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
06:02:24 ^
06:02:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
06:02:24 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
06:02:24 ^
06:02:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
06:02:24 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
06:02:24 ^
06:02:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
06:02:24 svc.getShapeStatsRestricted(
06:02:24 ^
06:02:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
06:02:24 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
06:02:24 ^
06:02:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
06:02:24 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
06:02:24 ^
06:02:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
06:02:24 request.typesToIgnore = Collections.singletonList("TagAnnotation");
06:02:24 ^
06:02:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
06:02:24 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
06:02:24 ^
06:02:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
06:02:24 request.typesToIgnore = Collections.singletonList("Annotation");
06:02:24 ^
06:02:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
06:02:24 request.typesToIgnore = Collections.singletonList("Annotation");
06:02:24 ^
06:02:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
06:02:24 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
06:02:24 ^
06:02:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
06:02:24 p2.setRelatedTo(p1);
06:02:24 ^
06:02:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
06:02:24 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
06:02:24 ^
06:02:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
06:02:24 pixels1.setRelatedTo(pixels2);
06:02:24 ^
06:02:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
06:02:24 Pixels pixels = pixels1.getRelatedTo();
06:02:24 ^
06:02:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
06:02:24 Assert.assertNull(pixels1.getRelatedTo());
06:02:24 ^
06:02:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
06:02:24 pixels1.setRelatedTo(pixels2);
06:02:24 ^
06:02:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
06:02:24 Pixels pixels = pixels1.getRelatedTo();
06:02:24 ^
06:02:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
06:02:24 Assert.assertNull(pixels1.getRelatedTo());
06:02:24 ^
06:02:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
06:02:24 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
06:02:24 ^
06:02:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
06:02:24 l = svc.getRoiMeasurements(image.getId().getValue(), options);
06:02:24 ^
06:02:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
06:02:24 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
06:02:24 ^
06:02:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
06:02:24 l = svc.getRoiMeasurements(image.getId().getValue(), options);
06:02:24 ^
06:02:25Note: Some input files use unchecked or unsafe operations.
06:02:25Note: Recompile with -Xlint:unchecked for details.
06:02:2588 warnings
06:02:25Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_784975060.tmp
06:02:25Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
06:02:25:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
06:02:25:: delivering :: omero#OmeroJava-test;working@db631b687d0c :: 5.6.3-552-050aa06f48-ice36-b424 :: integration :: Sun May 25 06:02:16 UTC 2025
06:02:25 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
06:02:25:: publishing :: omero#OmeroJava-test
06:02:25 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-552-050aa06f48-ice36-b424.jar
06:02:25 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-552-050aa06f48-ice36-b424.xml
06:02:2506:02:25build-eclipse:
06:02:25No sub-builds to iterate on
06:02:25Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
06:02:2506:02:25retrieve:
06:02:25:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
06:02:25:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
06:02:2706:02:27prepare:
06:02:27Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
06:02:2806:02:28release-clients:
06:02:28Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-552-050aa06f48-ice36-b424.zip
06:02:3406:02:34release-zip:
06:02:34Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-552-050aa06f48-ice36-b424.zip
06:02:4506:02:45BUILD SUCCESSFUL
06:02:45Total time: 1 minute 20 seconds
06:02:45++ '[' -d .git ']'
06:02:45++ python3 ./build.py release-src
06:02:46Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
06:02:4606:02:46release-src-git:
06:02:46Releasing openmicroscopy-5.6.3-552-050aa06f48-ice36-b424
06:02:47 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-552-050aa06f48-ice36-b424.zip
06:02:47 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-552-050aa06f48-ice36-b424-base.zip
06:02:4906:02:49BUILD SUCCESSFUL
06:02:49Total time: 3 seconds
06:02:49++ echo BUILD_NUMBER=424
06:02:49++ echo OMERO_BRANCH=merge_ci
06:02:49++ git_info
06:02:49+++ git rev-parse HEAD
06:02:49++ HEAD=050aa06f48775d7666b579eef882c586a1a0d74e
06:02:49++ git log --max-count=1 050aa06f48775d7666b579eef882c586a1a0d74e
06:02:49++ env
06:02:49++ sort
06:02:49Archiving artifacts
06:03:13Finished: SUCCESS
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