08:55:11Started by upstream project "Trigger" build number 50508:55:11originally caused by:
08:55:11 Started by user devspace08:55:11 Restarted from build #504, stage OMERO Python
08:55:11Running as SYSTEM
08:55:11Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
08:55:11The recommended git tool is: NONE
08:55:11No credentials specified
08:55:11 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
08:55:11Fetching changes from the remote Git repository
08:55:11 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
08:55:11Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git08:55:11 > git --version # timeout=10
08:55:11 > git --version # 'git version 2.43.5'
08:55:11 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
08:55:11 > git rev-parse origin/merge_ci^{commit} # timeout=10
08:55:11Checking out Revision 0adf5ee26b4cd5ef2b9e90e0fa963ca4439ae30b (origin/merge_ci)
08:55:11 > git config core.sparsecheckout # timeout=10
08:55:11 > git checkout -f 0adf5ee26b4cd5ef2b9e90e0fa963ca4439ae30b # timeout=10
08:55:11Commit message: "Add version.properties to etc/omero.properties"
08:55:11 > git rev-list --no-walk 11b87d054ffe5f92065fa27560429adb0c5476ac # timeout=10
08:55:11Cleaning workspace
08:55:11 > git rev-parse --verify HEAD # timeout=10
08:55:11Resetting working tree
08:55:11 > git reset --hard # timeout=10
08:55:11 > git clean -fdx # timeout=10
08:55:12Copied 6 artifacts from "OMERO-python-superbuild-build" build number 42808:55:12[OMERO-build] $ /bin/bash -xe /tmp/jenkins9092690254179012470.sh
08:55:12+ mv omero-scripts/dist/omero_scripts-5.9.1.dev0.tar.gz .
08:55:12+ cd src
08:55:12+ export OMERO_BRANCH=merge_ci
08:55:12+ OMERO_BRANCH=merge_ci
08:55:12+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
08:55:12+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
08:55:12+ source /home/omero/settings.env
08:55:12++ OMERO_DB_HOST=pg
08:55:12++ OMERO_DB_USER=postgres
08:55:12++ OMERO_DB_PASS=
08:55:12++ OMERO_ROOT_PASS=omero
08:55:12++ OMERO_DATA_DIR=/OMERO
08:55:12++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
08:55:12+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
08:55:16+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl08:55:16Collecting zeroc-ice==3.6.5
08:55:17 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
08:55:20 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 7.5 MB/s eta 0:00:00
08:55:20Installing collected packages: zeroc-ice
08:55:21Successfully installed zeroc-ice-3.6.5
08:55:2108:55:21[notice] A new release of pip available: 22.3.1 -> 25.1.1
08:55:21[notice] To update, run: python3.11 -m pip install --upgrade pip
08:55:21+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
08:55:21Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
08:55:21Collecting setuptools<66
08:55:21 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
08:55:21Collecting omero-py
08:55:21 Using cached omero_py-5.20.0-py3-none-any.whl (2.8 MB)
08:55:22Collecting urllib3<2
08:55:22 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
08:55:22Collecting appdirs
08:55:22 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
08:55:22Collecting future
08:55:22 Using cached future-1.0.0-py3-none-any.whl (491 kB)
08:55:22Collecting numpy<3
08:55:22 Using cached numpy-2.2.6-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (16.8 MB)
08:55:23Collecting Pillow>=10.0.0
08:55:23 Using cached pillow-11.2.1-cp311-cp311-manylinux_2_28_x86_64.whl (4.6 MB)
08:55:23Collecting PyYAML
08:55:23 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB)
08:55:23Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
08:55:23Collecting requests
08:55:23 Using cached requests-2.32.3-py3-none-any.whl (64 kB)
08:55:23Collecting portalocker
08:55:23 Using cached portalocker-3.1.1-py3-none-any.whl (19 kB)
08:55:23Collecting charset-normalizer<4,>=2
08:55:23 Using cached charset_normalizer-3.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (147 kB)
08:55:23Collecting idna<4,>=2.5
08:55:23 Using cached idna-3.10-py3-none-any.whl (70 kB)
08:55:23Collecting certifi>=2017.4.17
08:55:23 Using cached certifi-2025.4.26-py3-none-any.whl (159 kB)
08:55:23Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset-normalizer, certifi, requests, omero-py
08:55:23 Attempting uninstall: setuptools
08:55:23 Found existing installation: setuptools 65.5.1
08:55:24 Uninstalling setuptools-65.5.1:
08:55:24 Successfully uninstalled setuptools-65.5.1
08:55:29Successfully installed Pillow-11.2.1 PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.4.26 charset-normalizer-3.4.2 future-1.0.0 idna-3.10 numpy-2.2.6 omero-py-5.20.0 portalocker-3.1.1 requests-2.32.3 setuptools-65.7.0 urllib3-1.26.20
08:55:2908:55:29[notice] A new release of pip available: 22.3.1 -> 25.1.1
08:55:29[notice] To update, run: python3.11 -m pip install --upgrade pip
08:55:29+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
08:55:29++ deactivate nondestructive
08:55:29++ '[' -n '' ']'
08:55:29++ '[' -n '' ']'
08:55:29++ hash -r
08:55:29++ '[' -n '' ']'
08:55:29++ unset VIRTUAL_ENV
08:55:29++ unset VIRTUAL_ENV_PROMPT
08:55:29++ '[' '!' nondestructive = nondestructive ']'
08:55:29++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
08:55:29++ export VIRTUAL_ENV
08:55:29++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
08:55:29++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
08:55:29++ export PATH
08:55:29++ '[' -n '' ']'
08:55:29++ '[' -z '' ']'
08:55:29++ _OLD_VIRTUAL_PS1=
08:55:29++ PS1='(omero-virtualenv) '
08:55:29++ export PS1
08:55:29++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
08:55:29++ export VIRTUAL_ENV_PROMPT
08:55:29++ hash -r
08:55:29+ source docs/hudson/OMERO.sh
08:55:29++ set -e
08:55:29++ set -u
08:55:29++ set -x
08:55:29++ source docs/hudson/functions.sh
08:55:29++ echo Building merge_ci
08:55:29Building merge_ci
08:55:29++ python3 ./build.py build-dev release-all
08:55:29Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
08:55:3008:55:30check-ivy:
08:55:30Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
08:55:30Created dir: /home/omero/workspace/OMERO-build/src/target
08:55:30:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
08:55:30:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:55:3008:55:30build-scons:
08:55:30Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
08:55:30No sub-builds to iterate on
08:55:31Entering /home/omero/workspace/OMERO-build/src/components/tools...
08:55:3108:55:31buildlist:
08:55:31:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
08:55:31:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:55:3108:55:31clean:
08:55:31Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:55:31Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:55:3108:55:31python-clean:
08:55:31WARNING: '' not a valid package name; please use only .-separated package names in setup.py
08:55:31/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-562-0adf5ee26b-ice36-b435') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
08:55:31 warnings.warn(
08:55:31running clean
08:55:31Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
08:55:31Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
08:55:3208:55:32python-clean:
08:55:32WARNING: '' not a valid package name; please use only .-separated package names in setup.py
08:55:32/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-562-0adf5ee26b-ice36-b435') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
08:55:32 warnings.warn(
08:55:32running clean
08:55:32Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
08:55:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
08:55:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:55:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:55:3208:55:32python-clean:
08:55:32WARNING: '' not a valid package name; please use only .-separated package names in setup.py
08:55:32/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-562-0adf5ee26b-ice36-b435') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
08:55:32 warnings.warn(
08:55:32running clean
08:55:32Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
08:55:32Deleting directory /home/omero/workspace/OMERO-build/src/target
08:55:3208:55:32build-scons:
08:55:32Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
08:55:3208:55:32build:
08:55:32No sub-builds to iterate on
08:55:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:55:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:55:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
08:55:33Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
08:55:3308:55:33tools-init:
08:55:33no-op
08:55:3308:55:33retrieve:
08:55:33:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
08:55:33:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:55:33WARNING: An illegal reflective access operation has occurred
08:55:33WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
08:55:33WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
08:55:33WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
08:55:33WARNING: All illegal access operations will be denied in a future release
08:55:4708:55:47prepare:
08:55:47Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
08:55:47Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
08:55:47Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
08:55:47Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
08:55:47Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
08:55:47Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
08:55:47Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
08:55:47Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
08:55:47Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
08:55:47Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
08:55:47Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
08:55:47Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
08:55:47Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
08:55:47Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
08:55:47Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
08:55:4708:55:47pre-compile:
08:55:47Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
08:55:47Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
08:55:47Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
08:55:47Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
08:55:47Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
08:55:4708:55:47compile:
08:55:47no-op
08:55:4708:55:47package:
08:55:47Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
08:55:4808:55:48install:
08:55:48:: delivering :: omero#omero_client;working@db631b687d0c :: 5.6.3-562-0adf5ee26b-ice36-b435 :: integration :: Wed Jun 04 08:55:32 UTC 2025
08:55:48 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
08:55:48:: publishing :: omero#omero_client
08:55:48 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-562-0adf5ee26b-ice36-b435/omero_client-5.6.3-562-0adf5ee26b-ice36-b435.jar
08:55:48 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-562-0adf5ee26b-ice36-b435/omero_client-5.6.3-562-0adf5ee26b-ice36-b435.xml
08:55:48Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:55:48Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:55:4808:55:48retrieve:
08:55:48:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
08:55:48:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:55:48Entering /home/omero/workspace/OMERO-build/src/components/tools...
08:55:4808:55:48dist:
08:55:48Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
08:55:48Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
08:55:48Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
08:55:48Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
08:55:49Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
08:55:49Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
08:55:49Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
08:55:49Entering /home/omero/workspace/OMERO-build/src/components/tests...
08:55:49Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
08:55:4908:55:49copy-licenses:
08:55:49Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
08:55:49Created dir: /home/omero/workspace/OMERO-build/src/dist/share
08:55:49Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
08:55:4908:55:49copy-history:
08:55:49Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
08:55:4908:55:49copy-etc:
08:55:49Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
08:55:49Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
08:55:4908:55:49copy-sql:
08:55:49Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
08:55:5208:55:52copy-server:
08:55:52 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
08:55:5208:55:52copy-client:
08:55:52Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
08:55:55 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
08:55:5508:55:55update-version:
08:55:55Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
08:55:5508:55:55create-workdirs:
08:55:55Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
08:55:55Created dir: /home/omero/workspace/OMERO-build/src/dist/var
08:55:5508:55:55copy-luts:
08:55:55Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
08:55:55Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
08:55:5508:55:55test-compile:
08:55:55:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:55:55Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
08:55:55Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:55:55Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:55:55Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:55:55Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:55:55Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
08:55:55Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
08:55:5608:55:56testng-init:
08:55:56:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
08:55:56:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:55:5808:55:58,392 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
08:55:5808:55:58,395 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5d3e24e2 - No custom configurators were discovered as a service.
08:55:5808:55:58,395 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5d3e24e2 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
08:55:5808:55:58,398 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5d3e24e2 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
08:55:5808:55:58,399 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
08:55:5808:55:58,399 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
08:55:5808:55:58,400 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5d3e24e2 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
08:55:5808:55:58,400 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5d3e24e2 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
08:55:5808:55:58,401 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5d3e24e2 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
08:55:5808:55:58,402 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
08:55:5808:55:58,402 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
08:55:5808:55:58,403 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@280cc940 - Resource [logback.xml] occurs multiple times on the classpath.
08:55:5808:55:58,403 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@280cc940 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
08:55:5808:55:58,403 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@280cc940 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
08:55:5808:55:58,602 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
08:55:5808:55:58,602 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
08:55:5808:55:58,621 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
08:55:5808:55:58,623 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@6a478680 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
08:55:5808:55:58,623 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@6a478680 - Please move "immediateFlush" property into the enclosing appender.
08:55:5808:55:58,685 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@6a478680 - Setting the "immediateFlush" property of the enclosing appender to true
08:55:5808:55:58,686 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
08:55:5808:55:58,686 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
08:55:5808:55:58,686 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
08:55:5808:55:58,686 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
08:55:5808:55:58,686 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
08:55:5808:55:58,686 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
08:55:5808:55:58,687 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7eecb648 - End of configuration.
08:55:5808:55:58,689 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@52599443 - Registering current configuration as safe fallback point
08:55:5808:55:58,689 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5d3e24e2 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 288 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
08:55:5808:55:58lifecycle.test-compile:
08:55:58Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
08:55:58Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
08:55:59warning: [options] bootstrap class path not set in conjunction with -source 8
08:56:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:56:00import omero.grid.RawAccessRequest;
08:56:00 ^
08:56:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:56:00import omero.grid.RawAccessRequest;
08:56:00 ^
08:56:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:56:00import omero.grid.RawAccessRequest;
08:56:00 ^
08:56:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
08:56:00import omero.model.ImportJob;
08:56:00 ^
08:56:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
08:56:00import omero.model.ImportJobI;
08:56:00 ^
08:56:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
08:56:01 IObject link = (IObject) linkClass.newInstance();
08:56:01 ^
08:56:01 where T is a type-variable:
08:56:01 T extends Object declared in class Class
08:56:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
08:56:01 T copy = (T) obj.getClass().newInstance();
08:56:01 ^
08:56:01 where T is a type-variable:
08:56:01 T extends Object declared in class Class
08:56:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:56:01 RawAccessRequest raw = new RawAccessRequest();
08:56:01 ^
08:56:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:56:01 RawAccessRequest raw = new RawAccessRequest();
08:56:01 ^
08:56:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
08:56:01 raw.repoUuid = legacy.root().getHash().getValue();
08:56:01 ^
08:56:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
08:56:01 raw.command = "rm";
08:56:01 ^
08:56:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
08:56:01 raw.args = Arrays.asList(path);
08:56:01 ^
08:56:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
08:56:01 final IObject link = linkClass.newInstance();
08:56:01 ^
08:56:01 where T is a type-variable:
08:56:01 T extends Object declared in class Class
08:56:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
08:56:01 originalLink.setChild(annotationClass.newInstance());
08:56:01 ^
08:56:01 where T is a type-variable:
08:56:01 T extends Object declared in class Class
08:56:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
08:56:02 RoiResult r = svc.findByImage(id, new RoiOptions());
08:56:02 ^
08:56:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:56:02 final RawAccessRequest request = new RawAccessRequest();
08:56:02 ^
08:56:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:56:02 final RawAccessRequest request = new RawAccessRequest();
08:56:02 ^
08:56:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
08:56:02 request.repoUuid = repo.root().getHash().getValue();
08:56:02 ^
08:56:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
08:56:02 request.command = "exists";
08:56:02 ^
08:56:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
08:56:02 request.args = Collections.singletonList(dirPath);
08:56:02 ^
08:56:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:56:02 final RawAccessRequest request = new RawAccessRequest();
08:56:02 ^
08:56:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:56:02 final RawAccessRequest request = new RawAccessRequest();
08:56:02 ^
08:56:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
08:56:02 request.repoUuid = repo.root().getHash().getValue();
08:56:02 ^
08:56:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
08:56:02 request.command = "exists";
08:56:02 ^
08:56:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
08:56:02 request.args = Collections.singletonList(dirName);
08:56:02 ^
08:56:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
08:56:02 final ImportJob importJob = new ImportJobI();
08:56:02 ^
08:56:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
08:56:02 final ImportJob importJob = new ImportJobI();
08:56:02 ^
08:56:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
08:56:02 importJob.setImageName(omero.rtypes.rstring(name));
08:56:02 ^
08:56:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
08:56:02 importJob.setImageDescription(omero.rtypes.rstring(desc));
08:56:02 ^
08:56:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
08:56:02 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
08:56:02 ^
08:56:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
08:56:02 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
08:56:02 ^
08:56:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
08:56:02 final String savedName = sent.getImageName().getValue().toString();
08:56:02 ^
08:56:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
08:56:02 final String savedDesc = sent.getImageDescription().getValue().toString();
08:56:02 ^
08:56:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
08:56:02 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
08:56:02 ^
08:56:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
08:56:02 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
08:56:02 ^
08:56:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
08:56:02 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
08:56:02 ^
08:56:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
08:56:02 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
08:56:02 ^
08:56:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
08:56:03 RoiResult r = svc.findByImage(image.getId().getValue(),
08:56:03 ^
08:56:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:56:03 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:56:03 ^
08:56:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:56:03 l = svc.getRoiMeasurements(image.getId().getValue(), options);
08:56:03 ^
08:56:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:56:03 l = svc.getRoiMeasurements(image.getId().getValue(), options);
08:56:03 ^
08:56:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:56:03 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:56:03 ^
08:56:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
08:56:03 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
08:56:03 ^
08:56:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:56:03 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:56:03 ^
08:56:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
08:56:03 table = svc.getTable(f.getId().getValue());
08:56:03 ^
08:56:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
08:56:03 RoiResult r = svc.findByImage(image.getId().getValue(),
08:56:03 ^
08:56:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
08:56:03 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
08:56:03 ^
08:56:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
08:56:03 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
08:56:03 ^
08:56:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
08:56:03 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
08:56:03 ^
08:56:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
08:56:03 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
08:56:03 ^
08:56:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
08:56:03 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
08:56:03 ^
08:56:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
08:56:03 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
08:56:03 ^
08:56:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
08:56:03 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
08:56:03 ^
08:56:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
08:56:03 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
08:56:03 ^
08:56:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
08:56:03 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
08:56:03 ^
08:56:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
08:56:03 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
08:56:03 ^
08:56:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
08:56:03 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
08:56:03 ^
08:56:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
08:56:03 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
08:56:03 ^
08:56:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
08:56:03 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
08:56:03 ^
08:56:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
08:56:03 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
08:56:03 ^
08:56:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
08:56:03 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
08:56:03 ^
08:56:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
08:56:03 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
08:56:03 ^
08:56:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
08:56:03 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
08:56:03 ^
08:56:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
08:56:03 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
08:56:03 ^
08:56:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
08:56:03 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
08:56:03 ^
08:56:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
08:56:03 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
08:56:03 ^
08:56:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
08:56:03 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
08:56:03 ^
08:56:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
08:56:03 svc.getShapeStatsRestricted(
08:56:03 ^
08:56:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
08:56:03 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
08:56:03 ^
08:56:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:56:03 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
08:56:03 ^
08:56:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
08:56:03 request.typesToIgnore = Collections.singletonList("TagAnnotation");
08:56:03 ^
08:56:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
08:56:03 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
08:56:03 ^
08:56:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
08:56:03 request.typesToIgnore = Collections.singletonList("Annotation");
08:56:03 ^
08:56:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
08:56:03 request.typesToIgnore = Collections.singletonList("Annotation");
08:56:03 ^
08:56:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:56:03 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
08:56:03 ^
08:56:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:56:03 p2.setRelatedTo(p1);
08:56:03 ^
08:56:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:56:03 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
08:56:03 ^
08:56:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:56:03 pixels1.setRelatedTo(pixels2);
08:56:03 ^
08:56:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:56:03 Pixels pixels = pixels1.getRelatedTo();
08:56:03 ^
08:56:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:56:03 Assert.assertNull(pixels1.getRelatedTo());
08:56:03 ^
08:56:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:56:03 pixels1.setRelatedTo(pixels2);
08:56:03 ^
08:56:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:56:03 Pixels pixels = pixels1.getRelatedTo();
08:56:03 ^
08:56:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:56:03 Assert.assertNull(pixels1.getRelatedTo());
08:56:03 ^
08:56:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:56:03 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:56:03 ^
08:56:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:56:03 l = svc.getRoiMeasurements(image.getId().getValue(), options);
08:56:03 ^
08:56:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:56:03 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:56:03 ^
08:56:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:56:03 l = svc.getRoiMeasurements(image.getId().getValue(), options);
08:56:03 ^
08:56:03Note: Some input files use unchecked or unsafe operations.
08:56:03Note: Recompile with -Xlint:unchecked for details.
08:56:0388 warnings
08:56:03Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1550557674.tmp
08:56:03Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
08:56:03:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:56:03:: delivering :: omero#OmeroJava-test;working@db631b687d0c :: 5.6.3-562-0adf5ee26b-ice36-b435 :: integration :: Wed Jun 04 08:55:55 UTC 2025
08:56:03 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
08:56:03:: publishing :: omero#OmeroJava-test
08:56:03 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-562-0adf5ee26b-ice36-b435.jar
08:56:03 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-562-0adf5ee26b-ice36-b435.xml
08:56:0308:56:03build-eclipse:
08:56:03No sub-builds to iterate on
08:56:03Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
08:56:0408:56:04retrieve:
08:56:04:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
08:56:04:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:56:0608:56:06prepare:
08:56:06Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
08:56:0708:56:07release-clients:
08:56:07Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-562-0adf5ee26b-ice36-b435.zip
08:56:1208:56:12release-zip:
08:56:12Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-562-0adf5ee26b-ice36-b435.zip
08:56:2408:56:24BUILD SUCCESSFUL
08:56:24Total time: 54 seconds
08:56:24++ '[' -d .git ']'
08:56:24++ python3 ./build.py release-src
08:56:24Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
08:56:2408:56:24release-src-git:
08:56:24Releasing openmicroscopy-5.6.3-562-0adf5ee26b-ice36-b435
08:56:26 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-562-0adf5ee26b-ice36-b435.zip
08:56:26 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-562-0adf5ee26b-ice36-b435-base.zip
08:56:2708:56:27BUILD SUCCESSFUL
08:56:27Total time: 3 seconds
08:56:27++ echo BUILD_NUMBER=435
08:56:27++ echo OMERO_BRANCH=merge_ci
08:56:27++ git_info
08:56:27+++ git rev-parse HEAD
08:56:27++ HEAD=0adf5ee26b4cd5ef2b9e90e0fa963ca4439ae30b
08:56:27++ git log --max-count=1 0adf5ee26b4cd5ef2b9e90e0fa963ca4439ae30b
08:56:27++ env
08:56:27++ sort
08:56:27Archiving artifacts
08:56:52Finished: SUCCESS
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