06:21:55Started by upstream project "Trigger" build number 51606:21:55originally caused by:
06:21:55 Started by user devspace06:21:55Running as SYSTEM
06:21:55Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
06:21:55The recommended git tool is: NONE
06:21:55No credentials specified
06:21:55 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
06:21:55Fetching changes from the remote Git repository
06:21:55 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
06:21:55Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git06:21:55 > git --version # timeout=10
06:21:55 > git --version # 'git version 2.43.5'
06:21:55 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
06:21:56 > git rev-parse origin/merge_ci^{commit} # timeout=10
06:21:56Checking out Revision 1b63fb50f904c32995ba6fbc738f1827730dad14 (origin/merge_ci)
06:21:56 > git config core.sparsecheckout # timeout=10
06:21:56 > git checkout -f 1b63fb50f904c32995ba6fbc738f1827730dad14 # timeout=10
06:21:56Commit message: "Add version.properties to etc/omero.properties"
06:21:56 > git rev-list --no-walk 1cf34e42d9333be00eb2a9a723644c2ba29462e7 # timeout=10
06:21:56Cleaning workspace
06:21:56 > git rev-parse --verify HEAD # timeout=10
06:21:56Resetting working tree
06:21:56 > git reset --hard # timeout=10
06:21:57 > git clean -fdx # timeout=10
06:21:57Copied 6 artifacts from "OMERO-python-superbuild-build" build number 43306:21:57[OMERO-build] $ /bin/bash -xe /tmp/jenkins15795073807051277819.sh
06:21:57+ mv omero-scripts/dist/omero_scripts-5.9.1.dev0.tar.gz .
06:21:57+ cd src
06:21:57+ export OMERO_BRANCH=merge_ci
06:21:57+ OMERO_BRANCH=merge_ci
06:21:57+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
06:21:57+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
06:21:57+ source /home/omero/settings.env
06:21:57++ OMERO_DB_HOST=pg
06:21:57++ OMERO_DB_USER=postgres
06:21:57++ OMERO_DB_PASS=
06:21:57++ OMERO_ROOT_PASS=omero
06:21:57++ OMERO_DATA_DIR=/OMERO
06:21:57++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
06:21:57+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
06:22:02+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl06:22:02Collecting zeroc-ice==3.6.5
06:22:03 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
06:22:04 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 19.7 MB/s eta 0:00:00
06:22:05Installing collected packages: zeroc-ice
06:22:05Successfully installed zeroc-ice-3.6.5
06:22:0506:22:05[notice] A new release of pip available: 22.3.1 -> 25.1.1
06:22:05[notice] To update, run: python3.11 -m pip install --upgrade pip
06:22:06+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
06:22:06Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
06:22:06Collecting setuptools<66
06:22:06 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
06:22:06Collecting omero-py
06:22:06 Using cached omero_py-5.20.0-py3-none-any.whl (2.8 MB)
06:22:06Collecting urllib3<2
06:22:06 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
06:22:06Collecting appdirs
06:22:06 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
06:22:07Collecting future
06:22:07 Using cached future-1.0.0-py3-none-any.whl (491 kB)
06:22:07Collecting numpy<3
06:22:07 Using cached numpy-2.3.0-cp311-cp311-manylinux_2_28_x86_64.whl (16.9 MB)
06:22:08Collecting Pillow>=10.0.0
06:22:08 Using cached pillow-11.2.1-cp311-cp311-manylinux_2_28_x86_64.whl (4.6 MB)
06:22:08Collecting PyYAML
06:22:08 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB)
06:22:08Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
06:22:08Collecting requests
06:22:08 Using cached requests-2.32.4-py3-none-any.whl (64 kB)
06:22:08Collecting portalocker
06:22:08 Using cached portalocker-3.1.1-py3-none-any.whl (19 kB)
06:22:08Collecting charset_normalizer<4,>=2
06:22:08 Using cached charset_normalizer-3.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (147 kB)
06:22:08Collecting idna<4,>=2.5
06:22:08 Using cached idna-3.10-py3-none-any.whl (70 kB)
06:22:08Collecting certifi>=2017.4.17
06:22:08 Using cached certifi-2025.4.26-py3-none-any.whl (159 kB)
06:22:08Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
06:22:08 Attempting uninstall: setuptools
06:22:08 Found existing installation: setuptools 65.5.1
06:22:09 Uninstalling setuptools-65.5.1:
06:22:09 Successfully uninstalled setuptools-65.5.1
06:22:14Successfully installed Pillow-11.2.1 PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.4.26 charset_normalizer-3.4.2 future-1.0.0 idna-3.10 numpy-2.3.0 omero-py-5.20.0 portalocker-3.1.1 requests-2.32.4 setuptools-65.7.0 urllib3-1.26.20
06:22:1406:22:14[notice] A new release of pip available: 22.3.1 -> 25.1.1
06:22:14[notice] To update, run: python3.11 -m pip install --upgrade pip
06:22:14+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
06:22:14++ deactivate nondestructive
06:22:14++ '[' -n '' ']'
06:22:14++ '[' -n '' ']'
06:22:14++ hash -r
06:22:14++ '[' -n '' ']'
06:22:14++ unset VIRTUAL_ENV
06:22:14++ unset VIRTUAL_ENV_PROMPT
06:22:14++ '[' '!' nondestructive = nondestructive ']'
06:22:14++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
06:22:14++ export VIRTUAL_ENV
06:22:14++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
06:22:14++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
06:22:14++ export PATH
06:22:14++ '[' -n '' ']'
06:22:14++ '[' -z '' ']'
06:22:14++ _OLD_VIRTUAL_PS1=
06:22:14++ PS1='(omero-virtualenv) '
06:22:14++ export PS1
06:22:14++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
06:22:14++ export VIRTUAL_ENV_PROMPT
06:22:14++ hash -r
06:22:14+ source docs/hudson/OMERO.sh
06:22:14++ set -e
06:22:14++ set -u
06:22:14++ set -x
06:22:14++ source docs/hudson/functions.sh
06:22:14++ echo Building merge_ci
06:22:14Building merge_ci
06:22:14++ python3 ./build.py build-dev release-all
06:22:15Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
06:22:1506:22:15check-ivy:
06:22:15Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
06:22:15Created dir: /home/omero/workspace/OMERO-build/src/target
06:22:15:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
06:22:15:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
06:22:1606:22:16build-scons:
06:22:16Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
06:22:16No sub-builds to iterate on
06:22:16Entering /home/omero/workspace/OMERO-build/src/components/tools...
06:22:1606:22:16buildlist:
06:22:16:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
06:22:16:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
06:22:1606:22:16clean:
06:22:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
06:22:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
06:22:1706:22:17python-clean:
06:22:17WARNING: '' not a valid package name; please use only .-separated package names in setup.py
06:22:17/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-567-1b63fb50f9-ice36-b440') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
06:22:17 warnings.warn(
06:22:17running clean
06:22:17Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
06:22:17Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
06:22:1706:22:17python-clean:
06:22:17WARNING: '' not a valid package name; please use only .-separated package names in setup.py
06:22:17/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-567-1b63fb50f9-ice36-b440') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
06:22:17 warnings.warn(
06:22:17running clean
06:22:17Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
06:22:17Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
06:22:17Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
06:22:17Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
06:22:1706:22:17python-clean:
06:22:17WARNING: '' not a valid package name; please use only .-separated package names in setup.py
06:22:17/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-567-1b63fb50f9-ice36-b440') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
06:22:17 warnings.warn(
06:22:17running clean
06:22:17Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
06:22:17Deleting directory /home/omero/workspace/OMERO-build/src/target
06:22:1806:22:18build-scons:
06:22:18Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
06:22:1806:22:18build:
06:22:18No sub-builds to iterate on
06:22:18Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
06:22:18Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
06:22:18Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
06:22:18Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
06:22:1806:22:18tools-init:
06:22:18no-op
06:22:1806:22:18retrieve:
06:22:18:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
06:22:18:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
06:22:19WARNING: An illegal reflective access operation has occurred
06:22:19WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
06:22:19WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
06:22:19WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
06:22:19WARNING: All illegal access operations will be denied in a future release
06:22:4306:22:43prepare:
06:22:43Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
06:22:43Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
06:22:43Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
06:22:43Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
06:22:43Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
06:22:43Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
06:22:43Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
06:22:43Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
06:22:43Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
06:22:43Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
06:22:43Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
06:22:43Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
06:22:43Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
06:22:43Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
06:22:43Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
06:22:4306:22:43pre-compile:
06:22:43Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
06:22:43Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
06:22:43Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
06:22:43Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
06:22:43Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
06:22:4306:22:43compile:
06:22:43no-op
06:22:4306:22:43package:
06:22:43Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
06:22:4406:22:44install:
06:22:44:: delivering :: omero#omero_client;working@0746fffe56ce :: 5.6.3-567-1b63fb50f9-ice36-b440 :: integration :: Thu Jun 12 06:22:18 UTC 2025
06:22:44 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
06:22:44:: publishing :: omero#omero_client
06:22:44 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-567-1b63fb50f9-ice36-b440/omero_client-5.6.3-567-1b63fb50f9-ice36-b440.jar
06:22:44 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-567-1b63fb50f9-ice36-b440/omero_client-5.6.3-567-1b63fb50f9-ice36-b440.xml
06:22:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
06:22:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
06:22:4406:22:44retrieve:
06:22:44:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
06:22:44:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
06:22:45Entering /home/omero/workspace/OMERO-build/src/components/tools...
06:22:4506:22:45dist:
06:22:45Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
06:22:45Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
06:22:45Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
06:22:45Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
06:22:45Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
06:22:45Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
06:22:45Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
06:22:45Entering /home/omero/workspace/OMERO-build/src/components/tests...
06:22:45Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
06:22:4506:22:45copy-licenses:
06:22:45Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
06:22:45Created dir: /home/omero/workspace/OMERO-build/src/dist/share
06:22:45Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
06:22:4506:22:45copy-history:
06:22:45Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
06:22:4506:22:45copy-etc:
06:22:45Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
06:22:45Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
06:22:4506:22:45copy-sql:
06:22:45Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
06:22:4906:22:49copy-server:
06:22:49 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
06:22:4906:22:49copy-client:
06:22:49Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
06:22:50 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
06:22:5106:22:51update-version:
06:22:51Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
06:22:5106:22:51create-workdirs:
06:22:51Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
06:22:51Created dir: /home/omero/workspace/OMERO-build/src/dist/var
06:22:5106:22:51copy-luts:
06:22:51Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
06:22:51Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
06:22:5106:22:51test-compile:
06:22:51:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
06:22:51Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
06:22:51Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
06:22:51Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
06:22:51Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
06:22:51Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
06:22:51Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
06:22:51Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
06:22:5106:22:51testng-init:
06:22:51:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
06:22:51:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
06:22:5406:22:54,070 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
06:22:5406:22:54,073 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6a478680 - No custom configurators were discovered as a service.
06:22:5406:22:54,073 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6a478680 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
06:22:5406:22:54,076 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6a478680 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
06:22:5406:22:54,077 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
06:22:5406:22:54,077 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
06:22:5406:22:54,077 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6a478680 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
06:22:5406:22:54,077 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6a478680 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
06:22:5406:22:54,079 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6a478680 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
06:22:5406:22:54,080 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
06:22:5406:22:54,080 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
06:22:5406:22:54,081 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7eecb648 - Resource [logback.xml] occurs multiple times on the classpath.
06:22:5406:22:54,081 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7eecb648 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
06:22:5406:22:54,081 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7eecb648 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
06:22:5406:22:54,276 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
06:22:5406:22:54,276 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
06:22:5406:22:54,296 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
06:22:5406:22:54,298 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@52599443 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
06:22:5406:22:54,298 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@52599443 - Please move "immediateFlush" property into the enclosing appender.
06:22:5406:22:54,358 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@52599443 - Setting the "immediateFlush" property of the enclosing appender to true
06:22:5406:22:54,359 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
06:22:5406:22:54,359 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
06:22:5406:22:54,359 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
06:22:5406:22:54,359 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
06:22:5406:22:54,359 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
06:22:5406:22:54,359 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
06:22:5406:22:54,360 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1c510181 - End of configuration.
06:22:5406:22:54,362 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4a74e70d - Registering current configuration as safe fallback point
06:22:5406:22:54,362 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6a478680 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 283 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
06:22:5406:22:54lifecycle.test-compile:
06:22:54Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
06:22:54Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
06:22:54warning: [options] bootstrap class path not set in conjunction with -source 8
06:22:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
06:22:55import omero.grid.RawAccessRequest;
06:22:55 ^
06:22:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
06:22:55import omero.grid.RawAccessRequest;
06:22:55 ^
06:22:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
06:22:56import omero.grid.RawAccessRequest;
06:22:56 ^
06:22:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
06:22:56import omero.model.ImportJob;
06:22:56 ^
06:22:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
06:22:56import omero.model.ImportJobI;
06:22:56 ^
06:22:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
06:22:56 IObject link = (IObject) linkClass.newInstance();
06:22:56 ^
06:22:56 where T is a type-variable:
06:22:56 T extends Object declared in class Class
06:22:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
06:22:57 T copy = (T) obj.getClass().newInstance();
06:22:57 ^
06:22:57 where T is a type-variable:
06:22:57 T extends Object declared in class Class
06:22:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
06:22:57 RawAccessRequest raw = new RawAccessRequest();
06:22:57 ^
06:22:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
06:22:57 RawAccessRequest raw = new RawAccessRequest();
06:22:57 ^
06:22:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
06:22:57 raw.repoUuid = legacy.root().getHash().getValue();
06:22:57 ^
06:22:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
06:22:57 raw.command = "rm";
06:22:57 ^
06:22:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
06:22:57 raw.args = Arrays.asList(path);
06:22:57 ^
06:22:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
06:22:57 final IObject link = linkClass.newInstance();
06:22:57 ^
06:22:57 where T is a type-variable:
06:22:57 T extends Object declared in class Class
06:22:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
06:22:57 originalLink.setChild(annotationClass.newInstance());
06:22:57 ^
06:22:57 where T is a type-variable:
06:22:57 T extends Object declared in class Class
06:22:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
06:22:57 RoiResult r = svc.findByImage(id, new RoiOptions());
06:22:57 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
06:22:58 final RawAccessRequest request = new RawAccessRequest();
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
06:22:58 final RawAccessRequest request = new RawAccessRequest();
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
06:22:58 request.repoUuid = repo.root().getHash().getValue();
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
06:22:58 request.command = "exists";
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
06:22:58 request.args = Collections.singletonList(dirPath);
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
06:22:58 final RawAccessRequest request = new RawAccessRequest();
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
06:22:58 final RawAccessRequest request = new RawAccessRequest();
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
06:22:58 request.repoUuid = repo.root().getHash().getValue();
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
06:22:58 request.command = "exists";
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
06:22:58 request.args = Collections.singletonList(dirName);
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
06:22:58 final ImportJob importJob = new ImportJobI();
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
06:22:58 final ImportJob importJob = new ImportJobI();
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
06:22:58 importJob.setImageName(omero.rtypes.rstring(name));
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
06:22:58 importJob.setImageDescription(omero.rtypes.rstring(desc));
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
06:22:58 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
06:22:58 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
06:22:58 final String savedName = sent.getImageName().getValue().toString();
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
06:22:58 final String savedDesc = sent.getImageDescription().getValue().toString();
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
06:22:58 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
06:22:58 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
06:22:58 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
06:22:58 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
06:22:58 RoiResult r = svc.findByImage(image.getId().getValue(),
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
06:22:58 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
06:22:58 l = svc.getRoiMeasurements(image.getId().getValue(), options);
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
06:22:58 l = svc.getRoiMeasurements(image.getId().getValue(), options);
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
06:22:58 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
06:22:58 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
06:22:58 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
06:22:58 table = svc.getTable(f.getId().getValue());
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
06:22:58 RoiResult r = svc.findByImage(image.getId().getValue(),
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
06:22:58 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
06:22:58 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
06:22:58 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
06:22:58 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
06:22:58 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
06:22:58 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
06:22:58 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
06:22:58 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
06:22:58 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
06:22:58 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
06:22:58 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
06:22:58 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
06:22:58 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
06:22:58 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
06:22:58 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
06:22:58 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
06:22:58 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
06:22:58 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
06:22:58 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
06:22:58 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
06:22:58 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
06:22:58 svc.getShapeStatsRestricted(
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
06:22:58 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
06:22:58 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
06:22:58 request.typesToIgnore = Collections.singletonList("TagAnnotation");
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
06:22:58 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
06:22:58 request.typesToIgnore = Collections.singletonList("Annotation");
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
06:22:58 request.typesToIgnore = Collections.singletonList("Annotation");
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
06:22:58 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
06:22:58 p2.setRelatedTo(p1);
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
06:22:58 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
06:22:58 pixels1.setRelatedTo(pixels2);
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
06:22:58 Pixels pixels = pixels1.getRelatedTo();
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
06:22:58 Assert.assertNull(pixels1.getRelatedTo());
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
06:22:58 pixels1.setRelatedTo(pixels2);
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
06:22:58 Pixels pixels = pixels1.getRelatedTo();
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
06:22:58 Assert.assertNull(pixels1.getRelatedTo());
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
06:22:58 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
06:22:58 l = svc.getRoiMeasurements(image.getId().getValue(), options);
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
06:22:58 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
06:22:58 ^
06:22:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
06:22:58 l = svc.getRoiMeasurements(image.getId().getValue(), options);
06:22:58 ^
06:22:59Note: Some input files use unchecked or unsafe operations.
06:22:59Note: Recompile with -Xlint:unchecked for details.
06:22:5988 warnings
06:22:59Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_850115925.tmp
06:22:59Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
06:22:59:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
06:22:59:: delivering :: omero#OmeroJava-test;working@0746fffe56ce :: 5.6.3-567-1b63fb50f9-ice36-b440 :: integration :: Thu Jun 12 06:22:51 UTC 2025
06:22:59 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
06:22:59:: publishing :: omero#OmeroJava-test
06:22:59 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-567-1b63fb50f9-ice36-b440.jar
06:22:59 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-567-1b63fb50f9-ice36-b440.xml
06:22:5906:22:59build-eclipse:
06:22:59No sub-builds to iterate on
06:22:59Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
06:22:5906:22:59retrieve:
06:22:59:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
06:22:59:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
06:23:0206:23:02prepare:
06:23:02Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
06:23:0306:23:03release-clients:
06:23:03Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-567-1b63fb50f9-ice36-b440.zip
06:23:0806:23:08release-zip:
06:23:08Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-567-1b63fb50f9-ice36-b440.zip
06:23:1906:23:19BUILD SUCCESSFUL
06:23:19Total time: 1 minute 4 seconds
06:23:20++ '[' -d .git ']'
06:23:20++ python3 ./build.py release-src
06:23:20Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
06:23:2006:23:20release-src-git:
06:23:20Releasing openmicroscopy-5.6.3-567-1b63fb50f9-ice36-b440
06:23:22 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-567-1b63fb50f9-ice36-b440.zip
06:23:22 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-567-1b63fb50f9-ice36-b440-base.zip
06:23:2306:23:23BUILD SUCCESSFUL
06:23:23Total time: 3 seconds
06:23:23++ echo BUILD_NUMBER=440
06:23:23++ echo OMERO_BRANCH=merge_ci
06:23:23++ git_info
06:23:23+++ git rev-parse HEAD
06:23:23++ HEAD=1b63fb50f904c32995ba6fbc738f1827730dad14
06:23:23++ git log --max-count=1 1b63fb50f904c32995ba6fbc738f1827730dad14
06:23:23++ env
06:23:23++ sort
06:23:23Archiving artifacts
06:23:47Finished: SUCCESS
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