02:43:09Started by upstream project "Trigger" build number 52502:43:09originally caused by:
02:43:09 Started by user devspace02:43:09Running as SYSTEM
02:43:10Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
02:43:10The recommended git tool is: NONE
02:43:10No credentials specified
02:43:10 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
02:43:10Fetching changes from the remote Git repository
02:43:10 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
02:43:10Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git02:43:10 > git --version # timeout=10
02:43:10 > git --version # 'git version 2.43.5'
02:43:10 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
02:43:14 > git rev-parse origin/merge_ci^{commit} # timeout=10
02:43:15Checking out Revision bca435d34b768dc4308207c233806d11a054f5a0 (origin/merge_ci)
02:43:15 > git config core.sparsecheckout # timeout=10
02:43:15 > git checkout -f bca435d34b768dc4308207c233806d11a054f5a0 # timeout=10
02:43:16Commit message: "Add version.properties to etc/omero.properties"
02:43:16 > git rev-list --no-walk 468b58077016ea9012d8489a835fb58dd310f9c2 # timeout=10
02:43:16Cleaning workspace
02:43:16 > git rev-parse --verify HEAD # timeout=10
02:43:16Resetting working tree
02:43:16 > git reset --hard # timeout=10
02:43:16 > git clean -fdx # timeout=10
02:43:17Copied 6 artifacts from "OMERO-python-superbuild-build" build number 43702:43:17[OMERO-build] $ /bin/bash -xe /tmp/jenkins1276598121566326390.sh
02:43:17+ mv omero-scripts/dist/omero_scripts-5.9.2.dev0.tar.gz .
02:43:17+ cd src
02:43:17+ export OMERO_BRANCH=merge_ci
02:43:17+ OMERO_BRANCH=merge_ci
02:43:17+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
02:43:17+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
02:43:17+ source /home/omero/settings.env
02:43:17++ OMERO_DB_HOST=pg
02:43:17++ OMERO_DB_USER=postgres
02:43:17++ OMERO_DB_PASS=
02:43:17++ OMERO_ROOT_PASS=omero
02:43:17++ OMERO_DATA_DIR=/OMERO
02:43:17++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
02:43:17+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
02:43:20+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl02:43:21Collecting zeroc-ice==3.6.5
02:43:21 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
02:43:23 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 19.6 MB/s eta 0:00:00
02:43:23Installing collected packages: zeroc-ice
02:43:24Successfully installed zeroc-ice-3.6.5
02:43:2402:43:24[notice] A new release of pip available: 22.3.1 -> 25.1.1
02:43:24[notice] To update, run: python3.11 -m pip install --upgrade pip
02:43:24+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
02:43:25Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
02:43:25Collecting setuptools<66
02:43:25 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
02:43:25Collecting omero-py
02:43:25 Using cached omero_py-5.21.0-py3-none-any.whl (2.8 MB)
02:43:25Collecting urllib3<2
02:43:25 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
02:43:26Collecting appdirs
02:43:26 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
02:43:26Collecting future
02:43:26 Using cached future-1.0.0-py3-none-any.whl (491 kB)
02:43:26Collecting numpy<3
02:43:26 Using cached numpy-2.3.0-cp311-cp311-manylinux_2_28_x86_64.whl (16.9 MB)
02:43:27Collecting Pillow>=10.0.0
02:43:27 Using cached pillow-11.2.1-cp311-cp311-manylinux_2_28_x86_64.whl (4.6 MB)
02:43:27Collecting PyYAML
02:43:27 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB)
02:43:27Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
02:43:27Collecting requests
02:43:27 Using cached requests-2.32.4-py3-none-any.whl (64 kB)
02:43:28Collecting portalocker
02:43:28 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
02:43:28Collecting charset_normalizer<4,>=2
02:43:28 Using cached charset_normalizer-3.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (147 kB)
02:43:28Collecting idna<4,>=2.5
02:43:28 Using cached idna-3.10-py3-none-any.whl (70 kB)
02:43:28Collecting certifi>=2017.4.17
02:43:28 Using cached certifi-2025.6.15-py3-none-any.whl (157 kB)
02:43:29Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
02:43:29 Attempting uninstall: setuptools
02:43:29 Found existing installation: setuptools 65.5.1
02:43:29 Uninstalling setuptools-65.5.1:
02:43:29 Successfully uninstalled setuptools-65.5.1
02:43:34Successfully installed Pillow-11.2.1 PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.6.15 charset_normalizer-3.4.2 future-1.0.0 idna-3.10 numpy-2.3.0 omero-py-5.21.0 portalocker-3.2.0 requests-2.32.4 setuptools-65.7.0 urllib3-1.26.20
02:43:3402:43:34[notice] A new release of pip available: 22.3.1 -> 25.1.1
02:43:34[notice] To update, run: python3.11 -m pip install --upgrade pip
02:43:34+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
02:43:34++ deactivate nondestructive
02:43:34++ '[' -n '' ']'
02:43:34++ '[' -n '' ']'
02:43:34++ hash -r
02:43:34++ '[' -n '' ']'
02:43:34++ unset VIRTUAL_ENV
02:43:34++ unset VIRTUAL_ENV_PROMPT
02:43:34++ '[' '!' nondestructive = nondestructive ']'
02:43:34++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
02:43:34++ export VIRTUAL_ENV
02:43:34++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
02:43:34++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
02:43:34++ export PATH
02:43:34++ '[' -n '' ']'
02:43:34++ '[' -z '' ']'
02:43:34++ _OLD_VIRTUAL_PS1=
02:43:34++ PS1='(omero-virtualenv) '
02:43:34++ export PS1
02:43:34++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
02:43:34++ export VIRTUAL_ENV_PROMPT
02:43:34++ hash -r
02:43:34+ source docs/hudson/OMERO.sh
02:43:34++ set -e
02:43:34++ set -u
02:43:34++ set -x
02:43:34++ source docs/hudson/functions.sh
02:43:34++ echo Building merge_ci
02:43:34Building merge_ci
02:43:34++ python3 ./build.py build-dev release-all
02:43:34Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
02:43:3502:43:35check-ivy:
02:43:35Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
02:43:35Created dir: /home/omero/workspace/OMERO-build/src/target
02:43:35:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
02:43:35:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
02:43:3602:43:36build-scons:
02:43:36Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
02:43:36No sub-builds to iterate on
02:43:36Entering /home/omero/workspace/OMERO-build/src/components/tools...
02:43:3602:43:36buildlist:
02:43:36:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
02:43:36:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
02:43:3602:43:36clean:
02:43:36Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
02:43:36Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
02:43:3702:43:37python-clean:
02:43:37WARNING: '' not a valid package name; please use only .-separated package names in setup.py
02:43:37/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-567-bca435d34b-ice36-b444') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
02:43:37 warnings.warn(
02:43:37running clean
02:43:37Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
02:43:37Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
02:43:3702:43:37python-clean:
02:43:37WARNING: '' not a valid package name; please use only .-separated package names in setup.py
02:43:37/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-567-bca435d34b-ice36-b444') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
02:43:37 warnings.warn(
02:43:37running clean
02:43:37Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
02:43:37Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
02:43:37Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
02:43:37Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
02:43:3702:43:37python-clean:
02:43:37WARNING: '' not a valid package name; please use only .-separated package names in setup.py
02:43:37/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-567-bca435d34b-ice36-b444') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
02:43:37 warnings.warn(
02:43:37running clean
02:43:37Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
02:43:37Deleting directory /home/omero/workspace/OMERO-build/src/target
02:43:3802:43:38build-scons:
02:43:38Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
02:43:3802:43:38build:
02:43:38No sub-builds to iterate on
02:43:38Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
02:43:38Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
02:43:38Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
02:43:38Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
02:43:3802:43:38tools-init:
02:43:38no-op
02:43:3802:43:38retrieve:
02:43:38:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
02:43:38:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
02:43:39WARNING: An illegal reflective access operation has occurred
02:43:39WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
02:43:39WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
02:43:39WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
02:43:39WARNING: All illegal access operations will be denied in a future release
02:44:0802:44:08prepare:
02:44:08Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
02:44:08Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
02:44:08Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
02:44:08Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
02:44:08Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
02:44:08Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
02:44:08Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
02:44:08Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
02:44:08Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
02:44:08Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
02:44:08Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
02:44:08Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
02:44:08Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
02:44:08Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
02:44:08Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
02:44:0802:44:08pre-compile:
02:44:08Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
02:44:08Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
02:44:09Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
02:44:09Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
02:44:09Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
02:44:0902:44:09compile:
02:44:09no-op
02:44:0902:44:09package:
02:44:09Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
02:44:0902:44:09install:
02:44:09:: delivering :: omero#omero_client;working@09a31b255605 :: 5.6.3-567-bca435d34b-ice36-b444 :: integration :: Wed Jun 18 02:43:38 UTC 2025
02:44:09 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
02:44:09:: publishing :: omero#omero_client
02:44:09 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-567-bca435d34b-ice36-b444/omero_client-5.6.3-567-bca435d34b-ice36-b444.jar
02:44:09 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-567-bca435d34b-ice36-b444/omero_client-5.6.3-567-bca435d34b-ice36-b444.xml
02:44:10Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
02:44:10Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
02:44:1002:44:10retrieve:
02:44:10:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
02:44:10:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
02:44:10Entering /home/omero/workspace/OMERO-build/src/components/tools...
02:44:1002:44:10dist:
02:44:10Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
02:44:10Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
02:44:10Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
02:44:10Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.2.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
02:44:10Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
02:44:10Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
02:44:10Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
02:44:10Entering /home/omero/workspace/OMERO-build/src/components/tests...
02:44:10Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
02:44:1002:44:10copy-licenses:
02:44:10Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
02:44:10Created dir: /home/omero/workspace/OMERO-build/src/dist/share
02:44:10Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
02:44:1002:44:10copy-history:
02:44:10Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
02:44:1002:44:10copy-etc:
02:44:10Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
02:44:10Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
02:44:1002:44:10copy-sql:
02:44:10Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
02:44:1602:44:16copy-server:
02:44:16 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
02:44:1702:44:17copy-client:
02:44:17Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
02:44:18 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
02:44:1802:44:18update-version:
02:44:18Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
02:44:1802:44:18create-workdirs:
02:44:18Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
02:44:18Created dir: /home/omero/workspace/OMERO-build/src/dist/var
02:44:1802:44:18copy-luts:
02:44:18Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
02:44:18Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
02:44:1802:44:18test-compile:
02:44:18:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
02:44:18Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
02:44:18Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
02:44:18Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
02:44:18Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
02:44:18Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
02:44:18Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
02:44:18Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
02:44:1802:44:18testng-init:
02:44:18:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
02:44:18:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
02:44:2202:44:22,154 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
02:44:2202:44:22,156 |-INFO in ch.qos.logback.classic.util.ContextInitializer@52599443 - No custom configurators were discovered as a service.
02:44:2202:44:22,156 |-INFO in ch.qos.logback.classic.util.ContextInitializer@52599443 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
02:44:2202:44:22,159 |-INFO in ch.qos.logback.classic.util.ContextInitializer@52599443 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
02:44:2202:44:22,160 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
02:44:2202:44:22,160 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
02:44:2202:44:22,161 |-INFO in ch.qos.logback.classic.util.ContextInitializer@52599443 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
02:44:2202:44:22,161 |-INFO in ch.qos.logback.classic.util.ContextInitializer@52599443 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
02:44:2202:44:22,163 |-INFO in ch.qos.logback.classic.util.ContextInitializer@52599443 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
02:44:2202:44:22,163 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
02:44:2202:44:22,163 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
02:44:2202:44:22,164 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1c510181 - Resource [logback.xml] occurs multiple times on the classpath.
02:44:2202:44:22,164 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1c510181 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
02:44:2202:44:22,164 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1c510181 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
02:44:2202:44:22,359 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
02:44:2202:44:22,359 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
02:44:2202:44:22,378 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
02:44:2202:44:22,380 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@4a74e70d - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
02:44:2202:44:22,380 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@4a74e70d - Please move "immediateFlush" property into the enclosing appender.
02:44:2202:44:22,439 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@4a74e70d - Setting the "immediateFlush" property of the enclosing appender to true
02:44:2202:44:22,440 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
02:44:2202:44:22,440 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
02:44:2202:44:22,440 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
02:44:2202:44:22,440 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
02:44:2202:44:22,440 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
02:44:2202:44:22,440 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
02:44:2202:44:22,441 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@513156fd - End of configuration.
02:44:2202:44:22,444 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4fd43b14 - Registering current configuration as safe fallback point
02:44:2202:44:22,444 |-INFO in ch.qos.logback.classic.util.ContextInitializer@52599443 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 281 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
02:44:2202:44:22lifecycle.test-compile:
02:44:22Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
02:44:22Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
02:44:22warning: [options] bootstrap class path not set in conjunction with -source 8
02:44:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
02:44:23import omero.grid.RawAccessRequest;
02:44:23 ^
02:44:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
02:44:24import omero.grid.RawAccessRequest;
02:44:24 ^
02:44:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
02:44:24import omero.grid.RawAccessRequest;
02:44:24 ^
02:44:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
02:44:24import omero.model.ImportJob;
02:44:24 ^
02:44:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
02:44:24import omero.model.ImportJobI;
02:44:24 ^
02:44:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
02:44:24 IObject link = (IObject) linkClass.newInstance();
02:44:24 ^
02:44:24 where T is a type-variable:
02:44:24 T extends Object declared in class Class
02:44:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
02:44:25 T copy = (T) obj.getClass().newInstance();
02:44:25 ^
02:44:25 where T is a type-variable:
02:44:25 T extends Object declared in class Class
02:44:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
02:44:25 RawAccessRequest raw = new RawAccessRequest();
02:44:25 ^
02:44:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
02:44:25 RawAccessRequest raw = new RawAccessRequest();
02:44:25 ^
02:44:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
02:44:25 raw.repoUuid = legacy.root().getHash().getValue();
02:44:25 ^
02:44:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
02:44:25 raw.command = "rm";
02:44:25 ^
02:44:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
02:44:25 raw.args = Arrays.asList(path);
02:44:25 ^
02:44:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
02:44:25 final IObject link = linkClass.newInstance();
02:44:25 ^
02:44:25 where T is a type-variable:
02:44:25 T extends Object declared in class Class
02:44:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
02:44:25 originalLink.setChild(annotationClass.newInstance());
02:44:25 ^
02:44:25 where T is a type-variable:
02:44:25 T extends Object declared in class Class
02:44:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
02:44:25 RoiResult r = svc.findByImage(id, new RoiOptions());
02:44:25 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
02:44:26 final RawAccessRequest request = new RawAccessRequest();
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
02:44:26 final RawAccessRequest request = new RawAccessRequest();
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
02:44:26 request.repoUuid = repo.root().getHash().getValue();
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
02:44:26 request.command = "exists";
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
02:44:26 request.args = Collections.singletonList(dirPath);
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
02:44:26 final RawAccessRequest request = new RawAccessRequest();
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
02:44:26 final RawAccessRequest request = new RawAccessRequest();
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
02:44:26 request.repoUuid = repo.root().getHash().getValue();
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
02:44:26 request.command = "exists";
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
02:44:26 request.args = Collections.singletonList(dirName);
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
02:44:26 final ImportJob importJob = new ImportJobI();
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
02:44:26 final ImportJob importJob = new ImportJobI();
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
02:44:26 importJob.setImageName(omero.rtypes.rstring(name));
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
02:44:26 importJob.setImageDescription(omero.rtypes.rstring(desc));
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
02:44:26 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
02:44:26 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
02:44:26 final String savedName = sent.getImageName().getValue().toString();
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
02:44:26 final String savedDesc = sent.getImageDescription().getValue().toString();
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
02:44:26 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
02:44:26 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
02:44:26 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
02:44:26 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
02:44:26 RoiResult r = svc.findByImage(image.getId().getValue(),
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
02:44:26 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
02:44:26 l = svc.getRoiMeasurements(image.getId().getValue(), options);
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
02:44:26 l = svc.getRoiMeasurements(image.getId().getValue(), options);
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
02:44:26 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
02:44:26 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
02:44:26 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
02:44:26 table = svc.getTable(f.getId().getValue());
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
02:44:26 RoiResult r = svc.findByImage(image.getId().getValue(),
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
02:44:26 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
02:44:26 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
02:44:26 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
02:44:26 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
02:44:26 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
02:44:26 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
02:44:26 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
02:44:26 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
02:44:26 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
02:44:26 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
02:44:26 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
02:44:26 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
02:44:26 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
02:44:26 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
02:44:26 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
02:44:26 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
02:44:26 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
02:44:26 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
02:44:26 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
02:44:26 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
02:44:26 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
02:44:26 svc.getShapeStatsRestricted(
02:44:26 ^
02:44:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
02:44:26 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
02:44:26 ^
02:44:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
02:44:27 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
02:44:27 ^
02:44:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
02:44:27 request.typesToIgnore = Collections.singletonList("TagAnnotation");
02:44:27 ^
02:44:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
02:44:27 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
02:44:27 ^
02:44:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
02:44:27 request.typesToIgnore = Collections.singletonList("Annotation");
02:44:27 ^
02:44:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
02:44:27 request.typesToIgnore = Collections.singletonList("Annotation");
02:44:27 ^
02:44:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
02:44:27 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
02:44:27 ^
02:44:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
02:44:27 p2.setRelatedTo(p1);
02:44:27 ^
02:44:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
02:44:27 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
02:44:27 ^
02:44:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
02:44:27 pixels1.setRelatedTo(pixels2);
02:44:27 ^
02:44:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
02:44:27 Pixels pixels = pixels1.getRelatedTo();
02:44:27 ^
02:44:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
02:44:27 Assert.assertNull(pixels1.getRelatedTo());
02:44:27 ^
02:44:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
02:44:27 pixels1.setRelatedTo(pixels2);
02:44:27 ^
02:44:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
02:44:27 Pixels pixels = pixels1.getRelatedTo();
02:44:27 ^
02:44:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
02:44:27 Assert.assertNull(pixels1.getRelatedTo());
02:44:27 ^
02:44:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
02:44:27 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
02:44:27 ^
02:44:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
02:44:27 l = svc.getRoiMeasurements(image.getId().getValue(), options);
02:44:27 ^
02:44:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
02:44:27 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
02:44:27 ^
02:44:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
02:44:27 l = svc.getRoiMeasurements(image.getId().getValue(), options);
02:44:27 ^
02:44:27Note: Some input files use unchecked or unsafe operations.
02:44:27Note: Recompile with -Xlint:unchecked for details.
02:44:2788 warnings
02:44:27Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1737489661.tmp
02:44:27Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
02:44:27:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
02:44:27:: delivering :: omero#OmeroJava-test;working@09a31b255605 :: 5.6.3-567-bca435d34b-ice36-b444 :: integration :: Wed Jun 18 02:44:18 UTC 2025
02:44:27 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
02:44:27:: publishing :: omero#OmeroJava-test
02:44:27 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-567-bca435d34b-ice36-b444.jar
02:44:27 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-567-bca435d34b-ice36-b444.xml
02:44:2702:44:27build-eclipse:
02:44:27No sub-builds to iterate on
02:44:27Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
02:44:2702:44:27retrieve:
02:44:27:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
02:44:27:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
02:44:2902:44:29prepare:
02:44:29Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
02:44:3102:44:31release-clients:
02:44:31Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-567-bca435d34b-ice36-b444.zip
02:44:3602:44:36release-zip:
02:44:36Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-567-bca435d34b-ice36-b444.zip
02:44:4702:44:47BUILD SUCCESSFUL
02:44:47Total time: 1 minute 12 seconds
02:44:47++ '[' -d .git ']'
02:44:47++ python3 ./build.py release-src
02:44:47Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
02:44:4802:44:48release-src-git:
02:44:48Releasing openmicroscopy-5.6.3-567-bca435d34b-ice36-b444
02:44:49 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-567-bca435d34b-ice36-b444.zip
02:44:49 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-567-bca435d34b-ice36-b444-base.zip
02:44:5102:44:51BUILD SUCCESSFUL
02:44:51Total time: 3 seconds
02:44:51++ echo BUILD_NUMBER=444
02:44:51++ echo OMERO_BRANCH=merge_ci
02:44:51++ git_info
02:44:51+++ git rev-parse HEAD
02:44:51++ HEAD=bca435d34b768dc4308207c233806d11a054f5a0
02:44:51++ git log --max-count=1 bca435d34b768dc4308207c233806d11a054f5a0
02:44:51++ env
02:44:51++ sort
02:44:51Archiving artifacts
02:45:15Finished: SUCCESS
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