09:20:53Started by upstream project "Trigger" build number 53609:20:53originally caused by:
09:20:53 Started by user devspace09:20:53Running as SYSTEM
09:20:53Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
09:20:53The recommended git tool is: NONE
09:20:53No credentials specified
09:20:53 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
09:20:53Fetching changes from the remote Git repository
09:20:53 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
09:20:53Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git09:20:53 > git --version # timeout=10
09:20:53 > git --version # 'git version 2.43.5'
09:20:53 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
09:20:59 > git rev-parse origin/merge_ci^{commit} # timeout=10
09:20:59Checking out Revision 4523d266feca187cbb47b1e00cc14d97bef8c79d (origin/merge_ci)
09:20:59 > git config core.sparsecheckout # timeout=10
09:20:59 > git checkout -f 4523d266feca187cbb47b1e00cc14d97bef8c79d # timeout=10
09:21:01Commit message: "Add version.properties to etc/omero.properties"
09:21:01 > git rev-list --no-walk a43ec3615d37db7e98e8fb785a4a9f6288fea66e # timeout=10
09:21:01Cleaning workspace
09:21:01 > git rev-parse --verify HEAD # timeout=10
09:21:01Resetting working tree
09:21:01 > git reset --hard # timeout=10
09:21:01 > git clean -fdx # timeout=10
09:21:02Copied 6 artifacts from "OMERO-python-superbuild-build" build number 44409:21:02[OMERO-build] $ /bin/bash -xe /tmp/jenkins4374456069317686312.sh
09:21:02+ mv omero-scripts/dist/omero_scripts-5.9.2.dev0.tar.gz .
09:21:02+ cd src
09:21:02+ export OMERO_BRANCH=merge_ci
09:21:02+ OMERO_BRANCH=merge_ci
09:21:02+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
09:21:02+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
09:21:02+ source /home/omero/settings.env
09:21:02++ OMERO_DB_HOST=pg
09:21:02++ OMERO_DB_USER=postgres
09:21:02++ OMERO_DB_PASS=
09:21:02++ OMERO_ROOT_PASS=omero
09:21:02++ OMERO_DATA_DIR=/OMERO
09:21:02++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
09:21:02+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
09:21:06+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl09:21:06Collecting zeroc-ice==3.6.5
09:21:07 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
09:21:09 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 13.1 MB/s eta 0:00:00
09:21:09Installing collected packages: zeroc-ice
09:21:10Successfully installed zeroc-ice-3.6.5
09:21:1009:21:10[notice] A new release of pip available: 22.3.1 -> 25.1.1
09:21:10[notice] To update, run: python3.11 -m pip install --upgrade pip
09:21:10+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
09:21:10Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
09:21:11Collecting setuptools<66
09:21:11 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
09:21:11Collecting omero-py
09:21:11 Using cached omero_py-5.21.0-py3-none-any.whl (2.8 MB)
09:21:11Collecting urllib3<2
09:21:11 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
09:21:11Collecting appdirs
09:21:11 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
09:21:11Collecting future
09:21:12 Using cached future-1.0.0-py3-none-any.whl (491 kB)
09:21:12Collecting numpy<3
09:21:12 Using cached numpy-2.3.1-cp311-cp311-manylinux_2_28_x86_64.whl (16.9 MB)
09:21:13Collecting Pillow>=10.0.0
09:21:13 Using cached pillow-11.2.1-cp311-cp311-manylinux_2_28_x86_64.whl (4.6 MB)
09:21:13Collecting PyYAML
09:21:13 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB)
09:21:13Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
09:21:13Collecting requests
09:21:13 Using cached requests-2.32.4-py3-none-any.whl (64 kB)
09:21:14Collecting portalocker
09:21:14 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
09:21:15Collecting charset_normalizer<4,>=2
09:21:15 Using cached charset_normalizer-3.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (147 kB)
09:21:15Collecting idna<4,>=2.5
09:21:15 Using cached idna-3.10-py3-none-any.whl (70 kB)
09:21:15Collecting certifi>=2017.4.17
09:21:15 Using cached certifi-2025.6.15-py3-none-any.whl (157 kB)
09:21:16Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
09:21:16 Attempting uninstall: setuptools
09:21:16 Found existing installation: setuptools 65.5.1
09:21:16 Uninstalling setuptools-65.5.1:
09:21:16 Successfully uninstalled setuptools-65.5.1
09:21:21Successfully installed Pillow-11.2.1 PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.6.15 charset_normalizer-3.4.2 future-1.0.0 idna-3.10 numpy-2.3.1 omero-py-5.21.0 portalocker-3.2.0 requests-2.32.4 setuptools-65.7.0 urllib3-1.26.20
09:21:2109:21:21[notice] A new release of pip available: 22.3.1 -> 25.1.1
09:21:21[notice] To update, run: python3.11 -m pip install --upgrade pip
09:21:21+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
09:21:21++ deactivate nondestructive
09:21:21++ '[' -n '' ']'
09:21:21++ '[' -n '' ']'
09:21:21++ hash -r
09:21:21++ '[' -n '' ']'
09:21:21++ unset VIRTUAL_ENV
09:21:21++ unset VIRTUAL_ENV_PROMPT
09:21:21++ '[' '!' nondestructive = nondestructive ']'
09:21:21++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
09:21:21++ export VIRTUAL_ENV
09:21:21++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:21:21++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:21:21++ export PATH
09:21:21++ '[' -n '' ']'
09:21:21++ '[' -z '' ']'
09:21:21++ _OLD_VIRTUAL_PS1=
09:21:21++ PS1='(omero-virtualenv) '
09:21:21++ export PS1
09:21:21++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
09:21:21++ export VIRTUAL_ENV_PROMPT
09:21:21++ hash -r
09:21:21+ source docs/hudson/OMERO.sh
09:21:21++ set -e
09:21:21++ set -u
09:21:21++ set -x
09:21:21++ source docs/hudson/functions.sh
09:21:21++ echo Building merge_ci
09:21:21Building merge_ci
09:21:21++ python3 ./build.py build-dev release-all
09:21:21Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
09:21:2209:21:22check-ivy:
09:21:22Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
09:21:22Created dir: /home/omero/workspace/OMERO-build/src/target
09:21:22:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:21:22:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:21:2309:21:23build-scons:
09:21:23Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
09:21:23No sub-builds to iterate on
09:21:23Entering /home/omero/workspace/OMERO-build/src/components/tools...
09:21:2309:21:23buildlist:
09:21:23:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:21:23:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:21:2309:21:23clean:
09:21:23Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:21:23Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:21:2409:21:24python-clean:
09:21:24WARNING: '' not a valid package name; please use only .-separated package names in setup.py
09:21:24/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-569-4523d266fe-ice36-b451') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
09:21:24 warnings.warn(
09:21:24running clean
09:21:24Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
09:21:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
09:21:2409:21:24python-clean:
09:21:24WARNING: '' not a valid package name; please use only .-separated package names in setup.py
09:21:24/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-569-4523d266fe-ice36-b451') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
09:21:24 warnings.warn(
09:21:24running clean
09:21:24Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
09:21:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
09:21:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:21:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:21:2409:21:24python-clean:
09:21:24WARNING: '' not a valid package name; please use only .-separated package names in setup.py
09:21:24/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-569-4523d266fe-ice36-b451') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
09:21:24 warnings.warn(
09:21:24running clean
09:21:24Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
09:21:24Deleting directory /home/omero/workspace/OMERO-build/src/target
09:21:2409:21:24build-scons:
09:21:24Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
09:21:2509:21:25build:
09:21:25No sub-builds to iterate on
09:21:25Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:21:25Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:21:25Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
09:21:25Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
09:21:2509:21:25tools-init:
09:21:25no-op
09:21:2509:21:25retrieve:
09:21:25:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:21:25:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:21:26WARNING: An illegal reflective access operation has occurred
09:21:26WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
09:21:26WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
09:21:26WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
09:21:26WARNING: All illegal access operations will be denied in a future release
09:21:5209:21:52prepare:
09:21:52Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
09:21:52Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
09:21:52Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
09:21:52Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:21:52Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:21:52Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
09:21:52Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
09:21:52Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:21:52Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:21:52Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:21:52Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:21:52Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:21:52Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:21:52Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:21:52Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:21:5209:21:52pre-compile:
09:21:52Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:21:52Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:21:52Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:21:52Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:21:52Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:21:5309:21:53compile:
09:21:53no-op
09:21:5309:21:53package:
09:21:53Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
09:21:5309:21:53install:
09:21:53:: delivering :: omero#omero_client;working@52bf34d160e3 :: 5.6.3-569-4523d266fe-ice36-b451 :: integration :: Thu Jun 26 09:21:25 UTC 2025
09:21:53 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
09:21:53:: publishing :: omero#omero_client
09:21:53 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-569-4523d266fe-ice36-b451/omero_client-5.6.3-569-4523d266fe-ice36-b451.jar
09:21:53 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-569-4523d266fe-ice36-b451/omero_client-5.6.3-569-4523d266fe-ice36-b451.xml
09:21:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:21:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:21:5409:21:54retrieve:
09:21:54:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:21:54:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:21:54Entering /home/omero/workspace/OMERO-build/src/components/tools...
09:21:5409:21:54dist:
09:21:54Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
09:21:54Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
09:21:54Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
09:21:54Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.2.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
09:21:54Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
09:21:54Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
09:21:54Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
09:21:54Entering /home/omero/workspace/OMERO-build/src/components/tests...
09:21:54Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
09:21:5409:21:54copy-licenses:
09:21:54Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
09:21:54Created dir: /home/omero/workspace/OMERO-build/src/dist/share
09:21:54Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
09:21:5409:21:54copy-history:
09:21:54Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
09:21:5409:21:54copy-etc:
09:21:54Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
09:21:54Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
09:21:5409:21:54copy-sql:
09:21:54Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
09:21:5909:21:59copy-server:
09:21:59 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
09:21:5909:21:59copy-client:
09:21:59Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
09:22:00 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
09:22:0009:22:00update-version:
09:22:00Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
09:22:0009:22:00create-workdirs:
09:22:00Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
09:22:00Created dir: /home/omero/workspace/OMERO-build/src/dist/var
09:22:0009:22:00copy-luts:
09:22:00Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
09:22:00Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
09:22:0009:22:00test-compile:
09:22:00:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:22:00Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
09:22:00Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:22:00Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:22:00Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:22:00Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:22:00Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
09:22:00Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
09:22:0109:22:01testng-init:
09:22:01:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:22:01:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:22:0409:22:04,285 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
09:22:0409:22:04,287 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6a478680 - No custom configurators were discovered as a service.
09:22:0409:22:04,287 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6a478680 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
09:22:0409:22:04,291 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6a478680 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
09:22:0409:22:04,291 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
09:22:0409:22:04,292 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
09:22:0409:22:04,292 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6a478680 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
09:22:0409:22:04,292 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6a478680 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
09:22:0409:22:04,294 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6a478680 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
09:22:0409:22:04,295 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
09:22:0409:22:04,295 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
09:22:0409:22:04,296 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7eecb648 - Resource [logback.xml] occurs multiple times on the classpath.
09:22:0409:22:04,296 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7eecb648 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
09:22:0409:22:04,296 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7eecb648 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
09:22:0409:22:04,497 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
09:22:0409:22:04,497 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
09:22:0409:22:04,516 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
09:22:0409:22:04,518 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@52599443 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
09:22:0409:22:04,518 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@52599443 - Please move "immediateFlush" property into the enclosing appender.
09:22:0409:22:04,578 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@52599443 - Setting the "immediateFlush" property of the enclosing appender to true
09:22:0409:22:04,579 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
09:22:0409:22:04,579 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
09:22:0409:22:04,579 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
09:22:0409:22:04,579 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
09:22:0409:22:04,579 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
09:22:0409:22:04,579 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
09:22:0409:22:04,581 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1c510181 - End of configuration.
09:22:0409:22:04,583 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4a74e70d - Registering current configuration as safe fallback point
09:22:0409:22:04,583 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6a478680 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 289 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
09:22:0409:22:04lifecycle.test-compile:
09:22:04Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
09:22:04Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
09:22:04warning: [options] bootstrap class path not set in conjunction with -source 8
09:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:22:06import omero.grid.RawAccessRequest;
09:22:06 ^
09:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:22:06import omero.grid.RawAccessRequest;
09:22:06 ^
09:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:22:06import omero.grid.RawAccessRequest;
09:22:06 ^
09:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
09:22:06import omero.model.ImportJob;
09:22:06 ^
09:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
09:22:06import omero.model.ImportJobI;
09:22:06 ^
09:22:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
09:22:07 IObject link = (IObject) linkClass.newInstance();
09:22:07 ^
09:22:07 where T is a type-variable:
09:22:07 T extends Object declared in class Class
09:22:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
09:22:07 T copy = (T) obj.getClass().newInstance();
09:22:07 ^
09:22:07 where T is a type-variable:
09:22:07 T extends Object declared in class Class
09:22:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:22:07 RawAccessRequest raw = new RawAccessRequest();
09:22:07 ^
09:22:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:22:07 RawAccessRequest raw = new RawAccessRequest();
09:22:07 ^
09:22:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
09:22:07 raw.repoUuid = legacy.root().getHash().getValue();
09:22:07 ^
09:22:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
09:22:07 raw.command = "rm";
09:22:07 ^
09:22:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
09:22:07 raw.args = Arrays.asList(path);
09:22:07 ^
09:22:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
09:22:07 final IObject link = linkClass.newInstance();
09:22:07 ^
09:22:07 where T is a type-variable:
09:22:07 T extends Object declared in class Class
09:22:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
09:22:07 originalLink.setChild(annotationClass.newInstance());
09:22:07 ^
09:22:07 where T is a type-variable:
09:22:07 T extends Object declared in class Class
09:22:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
09:22:07 RoiResult r = svc.findByImage(id, new RoiOptions());
09:22:07 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:22:08 final RawAccessRequest request = new RawAccessRequest();
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:22:08 final RawAccessRequest request = new RawAccessRequest();
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
09:22:08 request.repoUuid = repo.root().getHash().getValue();
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
09:22:08 request.command = "exists";
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
09:22:08 request.args = Collections.singletonList(dirPath);
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:22:08 final RawAccessRequest request = new RawAccessRequest();
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:22:08 final RawAccessRequest request = new RawAccessRequest();
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
09:22:08 request.repoUuid = repo.root().getHash().getValue();
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
09:22:08 request.command = "exists";
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
09:22:08 request.args = Collections.singletonList(dirName);
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
09:22:08 final ImportJob importJob = new ImportJobI();
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
09:22:08 final ImportJob importJob = new ImportJobI();
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
09:22:08 importJob.setImageName(omero.rtypes.rstring(name));
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
09:22:08 importJob.setImageDescription(omero.rtypes.rstring(desc));
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
09:22:08 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
09:22:08 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
09:22:08 final String savedName = sent.getImageName().getValue().toString();
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
09:22:08 final String savedDesc = sent.getImageDescription().getValue().toString();
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
09:22:08 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
09:22:08 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
09:22:08 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
09:22:08 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
09:22:08 RoiResult r = svc.findByImage(image.getId().getValue(),
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:22:08 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:22:08 l = svc.getRoiMeasurements(image.getId().getValue(), options);
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:22:08 l = svc.getRoiMeasurements(image.getId().getValue(), options);
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:22:08 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
09:22:08 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:22:08 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
09:22:08 table = svc.getTable(f.getId().getValue());
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
09:22:08 RoiResult r = svc.findByImage(image.getId().getValue(),
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
09:22:08 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
09:22:08 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
09:22:08 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
09:22:08 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
09:22:08 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
09:22:08 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
09:22:08 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
09:22:08 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
09:22:08 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
09:22:08 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
09:22:08 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
09:22:08 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
09:22:08 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
09:22:08 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
09:22:08 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
09:22:08 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
09:22:08 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
09:22:08 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
09:22:08 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
09:22:08 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
09:22:08 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
09:22:08 svc.getShapeStatsRestricted(
09:22:08 ^
09:22:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
09:22:08 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
09:22:08 ^
09:22:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:22:09 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
09:22:09 ^
09:22:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
09:22:09 request.typesToIgnore = Collections.singletonList("TagAnnotation");
09:22:09 ^
09:22:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
09:22:09 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
09:22:09 ^
09:22:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
09:22:09 request.typesToIgnore = Collections.singletonList("Annotation");
09:22:09 ^
09:22:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
09:22:09 request.typesToIgnore = Collections.singletonList("Annotation");
09:22:09 ^
09:22:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:22:09 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
09:22:09 ^
09:22:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:22:09 p2.setRelatedTo(p1);
09:22:09 ^
09:22:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:22:09 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
09:22:09 ^
09:22:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:22:09 pixels1.setRelatedTo(pixels2);
09:22:09 ^
09:22:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:22:09 Pixels pixels = pixels1.getRelatedTo();
09:22:09 ^
09:22:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:22:09 Assert.assertNull(pixels1.getRelatedTo());
09:22:09 ^
09:22:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:22:09 pixels1.setRelatedTo(pixels2);
09:22:09 ^
09:22:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:22:09 Pixels pixels = pixels1.getRelatedTo();
09:22:09 ^
09:22:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:22:09 Assert.assertNull(pixels1.getRelatedTo());
09:22:09 ^
09:22:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:22:09 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:22:09 ^
09:22:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:22:09 l = svc.getRoiMeasurements(image.getId().getValue(), options);
09:22:09 ^
09:22:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:22:09 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:22:09 ^
09:22:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:22:09 l = svc.getRoiMeasurements(image.getId().getValue(), options);
09:22:09 ^
09:22:09Note: Some input files use unchecked or unsafe operations.
09:22:09Note: Recompile with -Xlint:unchecked for details.
09:22:0988 warnings
09:22:09Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1682363129.tmp
09:22:09Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
09:22:09:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:22:09:: delivering :: omero#OmeroJava-test;working@52bf34d160e3 :: 5.6.3-569-4523d266fe-ice36-b451 :: integration :: Thu Jun 26 09:22:00 UTC 2025
09:22:09 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
09:22:09:: publishing :: omero#OmeroJava-test
09:22:09 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-569-4523d266fe-ice36-b451.jar
09:22:09 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-569-4523d266fe-ice36-b451.xml
09:22:0909:22:09build-eclipse:
09:22:09No sub-builds to iterate on
09:22:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
09:22:1009:22:10retrieve:
09:22:10:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:22:10:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:22:1209:22:12prepare:
09:22:12Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
09:22:1309:22:13release-clients:
09:22:13Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-569-4523d266fe-ice36-b451.zip
09:22:1809:22:18release-zip:
09:22:18Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-569-4523d266fe-ice36-b451.zip
09:22:2909:22:29BUILD SUCCESSFUL
09:22:29Total time: 1 minute 8 seconds
09:22:29++ '[' -d .git ']'
09:22:29++ python3 ./build.py release-src
09:22:30Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
09:22:3009:22:30release-src-git:
09:22:30Releasing openmicroscopy-5.6.3-569-4523d266fe-ice36-b451
09:22:31 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-569-4523d266fe-ice36-b451.zip
09:22:31 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-569-4523d266fe-ice36-b451-base.zip
09:22:3309:22:33BUILD SUCCESSFUL
09:22:33Total time: 3 seconds
09:22:33++ echo BUILD_NUMBER=451
09:22:33++ echo OMERO_BRANCH=merge_ci
09:22:33++ git_info
09:22:33+++ git rev-parse HEAD
09:22:33++ HEAD=4523d266feca187cbb47b1e00cc14d97bef8c79d
09:22:33++ git log --max-count=1 4523d266feca187cbb47b1e00cc14d97bef8c79d
09:22:33++ env
09:22:33++ sort
09:22:33Archiving artifacts
09:22:57Finished: SUCCESS
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