00:23:46Started by upstream project "Trigger" build number 64400:23:46originally caused by:
00:23:46 Started by timer
00:23:46Running as SYSTEM
00:23:46Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
00:23:46The recommended git tool is: NONE
00:23:46No credentials specified
00:23:46 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
00:23:46Fetching changes from the remote Git repository
00:23:46 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
00:23:46Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git00:23:46 > git --version # timeout=10
00:23:46 > git --version # 'git version 2.43.5'
00:23:46 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
00:23:47 > git rev-parse origin/merge_ci^{commit} # timeout=10
00:23:47Checking out Revision b406bad8dd645e3a6c4f5d2a9167ac396022bea5 (origin/merge_ci)
00:23:47 > git config core.sparsecheckout # timeout=10
00:23:47 > git checkout -f b406bad8dd645e3a6c4f5d2a9167ac396022bea5 # timeout=10
00:23:47Commit message: "Add version.properties to etc/omero.properties"
00:23:47 > git rev-list --no-walk 247223aaa436d862df7fcb4d950dac3386189bf6 # timeout=10
00:23:47Cleaning workspace
00:23:47 > git rev-parse --verify HEAD # timeout=10
00:23:47Resetting working tree
00:23:47 > git reset --hard # timeout=10
00:23:47 > git clean -fdx # timeout=10
00:23:47Copied 6 artifacts from "OMERO-python-superbuild-build" build number 53800:23:47[OMERO-build] $ /bin/bash -xe /tmp/jenkins7593331846078291336.sh
00:23:47+ mv omero-scripts/dist/omero_scripts-5.9.2.dev0.tar.gz .
00:23:47+ cd src
00:23:47+ export OMERO_BRANCH=merge_ci
00:23:47+ OMERO_BRANCH=merge_ci
00:23:47+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
00:23:47+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
00:23:48+ source /home/omero/settings.env
00:23:48++ OMERO_DB_HOST=pg
00:23:48++ OMERO_DB_USER=postgres
00:23:48++ OMERO_DB_PASS=
00:23:48++ OMERO_ROOT_PASS=omero
00:23:48++ OMERO_DATA_DIR=/OMERO
00:23:48++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:23:48+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
00:23:51+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl00:23:51Collecting zeroc-ice==3.6.5
00:23:52 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:23:55 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 7.2 MB/s eta 0:00:00
00:23:55Installing collected packages: zeroc-ice
00:23:56Successfully installed zeroc-ice-3.6.5
00:23:5600:23:56[notice] A new release of pip available: 22.3.1 -> 25.2
00:23:56[notice] To update, run: python3.11 -m pip install --upgrade pip
00:23:56+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
00:23:56Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
00:23:57Collecting setuptools<66
00:23:57 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
00:23:57Collecting omero-py
00:23:57 Downloading omero_py-5.21.2-py3-none-any.whl (2.8 MB)
00:23:57 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.8/2.8 MB 10.8 MB/s eta 0:00:00
00:23:59Collecting appdirs
00:23:59 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:23:59Collecting future
00:23:59 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:24:00Collecting numpy<3
00:24:00 Using cached numpy-2.3.3-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
00:24:00Collecting Pillow>=10.0.0
00:24:00 Using cached pillow-11.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.6 MB)
00:24:00Collecting PyYAML
00:24:00 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
00:24:00Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
00:24:00Collecting requests
00:24:00 Using cached requests-2.32.5-py3-none-any.whl (64 kB)
00:24:01Collecting portalocker
00:24:01 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
00:24:01Collecting charset_normalizer<4,>=2
00:24:01 Using cached charset_normalizer-3.4.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (150 kB)
00:24:01Collecting idna<4,>=2.5
00:24:01 Using cached idna-3.10-py3-none-any.whl (70 kB)
00:24:01Collecting urllib3<3,>=1.21.1
00:24:01 Using cached urllib3-2.5.0-py3-none-any.whl (129 kB)
00:24:01Collecting certifi>=2017.4.17
00:24:01 Using cached certifi-2025.10.5-py3-none-any.whl (163 kB)
00:24:01Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
00:24:01 Attempting uninstall: setuptools
00:24:01 Found existing installation: setuptools 65.5.1
00:24:01 Uninstalling setuptools-65.5.1:
00:24:01 Successfully uninstalled setuptools-65.5.1
00:24:07Successfully installed Pillow-11.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2025.10.5 charset_normalizer-3.4.3 future-1.0.0 idna-3.10 numpy-2.3.3 omero-py-5.21.2 portalocker-3.2.0 requests-2.32.5 setuptools-65.7.0 urllib3-2.5.0
00:24:0700:24:07[notice] A new release of pip available: 22.3.1 -> 25.2
00:24:07[notice] To update, run: python3.11 -m pip install --upgrade pip
00:24:07+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
00:24:07++ deactivate nondestructive
00:24:07++ '[' -n '' ']'
00:24:07++ '[' -n '' ']'
00:24:07++ hash -r
00:24:07++ '[' -n '' ']'
00:24:07++ unset VIRTUAL_ENV
00:24:07++ unset VIRTUAL_ENV_PROMPT
00:24:07++ '[' '!' nondestructive = nondestructive ']'
00:24:07++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
00:24:07++ export VIRTUAL_ENV
00:24:07++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:24:07++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:24:07++ export PATH
00:24:07++ '[' -n '' ']'
00:24:07++ '[' -z '' ']'
00:24:07++ _OLD_VIRTUAL_PS1=
00:24:07++ PS1='(omero-virtualenv) '
00:24:07++ export PS1
00:24:07++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
00:24:07++ export VIRTUAL_ENV_PROMPT
00:24:07++ hash -r
00:24:07+ source docs/hudson/OMERO.sh
00:24:07++ set -e
00:24:07++ set -u
00:24:07++ set -x
00:24:07++ source docs/hudson/functions.sh
00:24:07++ echo Building merge_ci
00:24:07Building merge_ci
00:24:07++ python3 ./build.py build-dev release-all
00:24:07Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:24:0700:24:07check-ivy:
00:24:07Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
00:24:07Created dir: /home/omero/workspace/OMERO-build/src/target
00:24:08:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:24:08:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:24:0800:24:08build-scons:
00:24:08Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:24:08No sub-builds to iterate on
00:24:08Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:24:0800:24:08buildlist:
00:24:08:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:24:08:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:24:0900:24:09clean:
00:24:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:24:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:24:0900:24:09python-clean:
00:24:09WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:24:09/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-576-b406bad8dd-ice36-b541') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:24:09 warnings.warn(
00:24:09running clean
00:24:09Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
00:24:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:24:0900:24:09python-clean:
00:24:09WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:24:09/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-576-b406bad8dd-ice36-b541') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:24:09 warnings.warn(
00:24:09running clean
00:24:09Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
00:24:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:24:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:24:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:24:1000:24:10python-clean:
00:24:10WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:24:10/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-576-b406bad8dd-ice36-b541') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:24:10 warnings.warn(
00:24:10running clean
00:24:10Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
00:24:10Deleting directory /home/omero/workspace/OMERO-build/src/target
00:24:1000:24:10build-scons:
00:24:10Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:24:1000:24:10build:
00:24:10No sub-builds to iterate on
00:24:10Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:24:10Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:24:10Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:24:10Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:24:1000:24:10tools-init:
00:24:10no-op
00:24:1000:24:10retrieve:
00:24:10:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:24:10:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:24:12WARNING: An illegal reflective access operation has occurred
00:24:12WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
00:24:12WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
00:24:12WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
00:24:12WARNING: All illegal access operations will be denied in a future release
00:24:5200:24:52prepare:
00:24:52Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:24:52Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
00:24:52Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
00:24:52Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:24:52Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:24:52Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:24:52Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
00:24:52Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:24:52Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:24:52Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:24:52Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:24:52Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:24:52Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:24:52Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:24:52Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:24:5200:24:52pre-compile:
00:24:52Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:24:52Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:24:52Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:24:52Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:24:52Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:24:5200:24:52compile:
00:24:52no-op
00:24:5200:24:52package:
00:24:52Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
00:24:5200:24:52install:
00:24:52:: delivering :: omero#omero_client;working@52bf34d160e3 :: 5.6.3-576-b406bad8dd-ice36-b541 :: integration :: Tue Oct 07 00:24:10 UTC 2025
00:24:52 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
00:24:52:: publishing :: omero#omero_client
00:24:52 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-576-b406bad8dd-ice36-b541/omero_client-5.6.3-576-b406bad8dd-ice36-b541.jar
00:24:52 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-576-b406bad8dd-ice36-b541/omero_client-5.6.3-576-b406bad8dd-ice36-b541.xml
00:24:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:24:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:24:5300:24:53retrieve:
00:24:53:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:24:53:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:24:53Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:24:5300:24:53dist:
00:24:53Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
00:24:53Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
00:24:53Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:24:53Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.2.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:24:53Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
00:24:53Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
00:24:53Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
00:24:53Entering /home/omero/workspace/OMERO-build/src/components/tests...
00:24:53Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:24:5300:24:53copy-licenses:
00:24:53Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:24:53Created dir: /home/omero/workspace/OMERO-build/src/dist/share
00:24:53Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
00:24:5300:24:53copy-history:
00:24:53Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:24:5300:24:53copy-etc:
00:24:53Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
00:24:53Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
00:24:5300:24:53copy-sql:
00:24:53Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
00:24:5900:24:59copy-server:
00:24:59 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
00:24:5900:24:59copy-client:
00:24:59Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
00:25:00 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
00:25:0000:25:00update-version:
00:25:00Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
00:25:0000:25:00create-workdirs:
00:25:00Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
00:25:00Created dir: /home/omero/workspace/OMERO-build/src/dist/var
00:25:0000:25:00copy-luts:
00:25:00Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:25:00Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:25:0000:25:00test-compile:
00:25:00:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:25:00Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:25:00Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:25:00Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:25:00Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:25:00Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:25:01Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:25:01Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:25:0100:25:01testng-init:
00:25:01:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:25:01:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:25:0400:25:03,823 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
00:25:0400:25:03,826 |-INFO in ch.qos.logback.classic.util.ContextInitializer@33c4fc94 - No custom configurators were discovered as a service.
00:25:0400:25:03,826 |-INFO in ch.qos.logback.classic.util.ContextInitializer@33c4fc94 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
00:25:0400:25:03,829 |-INFO in ch.qos.logback.classic.util.ContextInitializer@33c4fc94 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
00:25:0400:25:03,830 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
00:25:0400:25:03,830 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
00:25:0400:25:03,831 |-INFO in ch.qos.logback.classic.util.ContextInitializer@33c4fc94 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
00:25:0400:25:03,831 |-INFO in ch.qos.logback.classic.util.ContextInitializer@33c4fc94 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
00:25:0400:25:03,832 |-INFO in ch.qos.logback.classic.util.ContextInitializer@33c4fc94 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
00:25:0400:25:03,833 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
00:25:0400:25:03,833 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:25:0400:25:03,834 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7ad9ed91 - Resource [logback.xml] occurs multiple times on the classpath.
00:25:0400:25:03,834 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7ad9ed91 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:25:0400:25:03,834 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7ad9ed91 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
00:25:0400:25:04,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
00:25:0400:25:04,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
00:25:0400:25:04,053 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
00:25:0400:25:04,055 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@60362b7 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
00:25:0400:25:04,055 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@60362b7 - Please move "immediateFlush" property into the enclosing appender.
00:25:0400:25:04,116 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@60362b7 - Setting the "immediateFlush" property of the enclosing appender to true
00:25:0400:25:04,117 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
00:25:0400:25:04,117 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
00:25:0400:25:04,117 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
00:25:0400:25:04,117 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
00:25:0400:25:04,117 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
00:25:0400:25:04,117 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
00:25:0400:25:04,118 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@18809db8 - End of configuration.
00:25:0400:25:04,120 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@c34e260 - Registering current configuration as safe fallback point
00:25:0400:25:04,120 |-INFO in ch.qos.logback.classic.util.ContextInitializer@33c4fc94 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 288 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
00:25:0400:25:04lifecycle.test-compile:
00:25:04Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:25:04Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:25:04warning: [options] bootstrap class path not set in conjunction with -source 8
00:25:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:25:05import omero.grid.RawAccessRequest;
00:25:05 ^
00:25:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:25:05import omero.grid.RawAccessRequest;
00:25:05 ^
00:25:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:25:05import omero.grid.RawAccessRequest;
00:25:05 ^
00:25:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
00:25:05import omero.model.ImportJob;
00:25:05 ^
00:25:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:25:05import omero.model.ImportJobI;
00:25:05 ^
00:25:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
00:25:06 IObject link = (IObject) linkClass.newInstance();
00:25:06 ^
00:25:06 where T is a type-variable:
00:25:06 T extends Object declared in class Class
00:25:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
00:25:06 T copy = (T) obj.getClass().newInstance();
00:25:06 ^
00:25:06 where T is a type-variable:
00:25:06 T extends Object declared in class Class
00:25:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:25:06 RawAccessRequest raw = new RawAccessRequest();
00:25:06 ^
00:25:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:25:06 RawAccessRequest raw = new RawAccessRequest();
00:25:06 ^
00:25:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:25:06 raw.repoUuid = legacy.root().getHash().getValue();
00:25:06 ^
00:25:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
00:25:06 raw.command = "rm";
00:25:06 ^
00:25:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
00:25:06 raw.args = Arrays.asList(path);
00:25:06 ^
00:25:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
00:25:07 final IObject link = linkClass.newInstance();
00:25:07 ^
00:25:07 where T is a type-variable:
00:25:07 T extends Object declared in class Class
00:25:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
00:25:07 originalLink.setChild(annotationClass.newInstance());
00:25:07 ^
00:25:07 where T is a type-variable:
00:25:07 T extends Object declared in class Class
00:25:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:25:07 RoiResult r = svc.findByImage(id, new RoiOptions());
00:25:07 ^
00:25:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:25:07 final RawAccessRequest request = new RawAccessRequest();
00:25:07 ^
00:25:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:25:07 final RawAccessRequest request = new RawAccessRequest();
00:25:07 ^
00:25:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:25:07 request.repoUuid = repo.root().getHash().getValue();
00:25:07 ^
00:25:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
00:25:07 request.command = "exists";
00:25:07 ^
00:25:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
00:25:07 request.args = Collections.singletonList(dirPath);
00:25:07 ^
00:25:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:25:07 final RawAccessRequest request = new RawAccessRequest();
00:25:07 ^
00:25:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:25:07 final RawAccessRequest request = new RawAccessRequest();
00:25:07 ^
00:25:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:25:07 request.repoUuid = repo.root().getHash().getValue();
00:25:07 ^
00:25:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
00:25:07 request.command = "exists";
00:25:07 ^
00:25:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
00:25:07 request.args = Collections.singletonList(dirName);
00:25:07 ^
00:25:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
00:25:08 final ImportJob importJob = new ImportJobI();
00:25:08 ^
00:25:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:25:08 final ImportJob importJob = new ImportJobI();
00:25:08 ^
00:25:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
00:25:08 importJob.setImageName(omero.rtypes.rstring(name));
00:25:08 ^
00:25:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
00:25:08 importJob.setImageDescription(omero.rtypes.rstring(desc));
00:25:08 ^
00:25:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:25:08 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:25:08 ^
00:25:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:25:08 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:25:08 ^
00:25:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:25:08 final String savedName = sent.getImageName().getValue().toString();
00:25:08 ^
00:25:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:25:08 final String savedDesc = sent.getImageDescription().getValue().toString();
00:25:08 ^
00:25:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:25:08 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:25:08 ^
00:25:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:25:08 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:25:08 ^
00:25:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:25:08 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
00:25:08 ^
00:25:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:25:08 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
00:25:08 ^
00:25:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:25:08 RoiResult r = svc.findByImage(image.getId().getValue(),
00:25:08 ^
00:25:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:25:08 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:25:08 ^
00:25:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:25:08 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:25:08 ^
00:25:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:25:08 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:25:08 ^
00:25:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:25:08 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:25:08 ^
00:25:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
00:25:08 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
00:25:08 ^
00:25:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:25:08 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:25:08 ^
00:25:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
00:25:08 table = svc.getTable(f.getId().getValue());
00:25:08 ^
00:25:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:25:08 RoiResult r = svc.findByImage(image.getId().getValue(),
00:25:08 ^
00:25:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:25:08 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
00:25:08 ^
00:25:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:25:08 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
00:25:08 ^
00:25:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:25:08 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
00:25:08 ^
00:25:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:25:08 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
00:25:08 ^
00:25:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:25:08 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:25:08 ^
00:25:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:25:08 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:25:08 ^
00:25:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:25:08 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:25:08 ^
00:25:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:25:08 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:25:08 ^
00:25:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
00:25:08 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:25:08 ^
00:25:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:25:08 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:25:08 ^
00:25:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:25:08 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:25:08 ^
00:25:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:25:08 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:25:08 ^
00:25:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:25:08 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:25:08 ^
00:25:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:25:08 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:25:08 ^
00:25:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:25:08 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:25:08 ^
00:25:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:25:08 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:25:08 ^
00:25:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:25:08 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:25:08 ^
00:25:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:25:08 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:25:08 ^
00:25:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:25:08 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:25:08 ^
00:25:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:25:08 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:25:08 ^
00:25:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:25:08 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:25:08 ^
00:25:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:25:08 svc.getShapeStatsRestricted(
00:25:08 ^
00:25:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:25:08 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
00:25:08 ^
00:25:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:25:08 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:25:08 ^
00:25:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:25:08 request.typesToIgnore = Collections.singletonList("TagAnnotation");
00:25:08 ^
00:25:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:25:08 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
00:25:08 ^
00:25:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:25:08 request.typesToIgnore = Collections.singletonList("Annotation");
00:25:08 ^
00:25:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:25:09 request.typesToIgnore = Collections.singletonList("Annotation");
00:25:09 ^
00:25:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:25:09 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:25:09 ^
00:25:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:25:09 p2.setRelatedTo(p1);
00:25:09 ^
00:25:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:25:09 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
00:25:09 ^
00:25:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:25:09 pixels1.setRelatedTo(pixels2);
00:25:09 ^
00:25:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:25:09 Pixels pixels = pixels1.getRelatedTo();
00:25:09 ^
00:25:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:25:09 Assert.assertNull(pixels1.getRelatedTo());
00:25:09 ^
00:25:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:25:09 pixels1.setRelatedTo(pixels2);
00:25:09 ^
00:25:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:25:09 Pixels pixels = pixels1.getRelatedTo();
00:25:09 ^
00:25:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:25:09 Assert.assertNull(pixels1.getRelatedTo());
00:25:09 ^
00:25:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:25:09 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:25:09 ^
00:25:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:25:09 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:25:09 ^
00:25:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:25:09 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:25:09 ^
00:25:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:25:09 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:25:09 ^
00:25:09Note: Some input files use unchecked or unsafe operations.
00:25:09Note: Recompile with -Xlint:unchecked for details.
00:25:0988 warnings
00:25:09Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_715851555.tmp
00:25:09Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
00:25:09:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:25:09:: delivering :: omero#OmeroJava-test;working@52bf34d160e3 :: 5.6.3-576-b406bad8dd-ice36-b541 :: integration :: Tue Oct 07 00:25:01 UTC 2025
00:25:09 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
00:25:09:: publishing :: omero#OmeroJava-test
00:25:09 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-576-b406bad8dd-ice36-b541.jar
00:25:09 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-576-b406bad8dd-ice36-b541.xml
00:25:0900:25:09build-eclipse:
00:25:09No sub-builds to iterate on
00:25:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:25:0900:25:09retrieve:
00:25:09:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:25:09:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:25:1400:25:14prepare:
00:25:14Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:25:1500:25:15release-clients:
00:25:15Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-576-b406bad8dd-ice36-b541.zip
00:25:2000:25:20release-zip:
00:25:20Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-576-b406bad8dd-ice36-b541.zip
00:25:3000:25:30BUILD SUCCESSFUL
00:25:30Total time: 1 minute 23 seconds
00:25:30++ '[' -d .git ']'
00:25:30++ python3 ./build.py release-src
00:25:30Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:25:3100:25:31release-src-git:
00:25:31Releasing openmicroscopy-5.6.3-576-b406bad8dd-ice36-b541
00:25:32 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-576-b406bad8dd-ice36-b541.zip
00:25:32 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-576-b406bad8dd-ice36-b541-base.zip
00:25:3400:25:34BUILD SUCCESSFUL
00:25:34Total time: 3 seconds
00:25:34++ echo BUILD_NUMBER=541
00:25:34++ echo OMERO_BRANCH=merge_ci
00:25:34++ git_info
00:25:34+++ git rev-parse HEAD
00:25:34++ HEAD=b406bad8dd645e3a6c4f5d2a9167ac396022bea5
00:25:34++ git log --max-count=1 b406bad8dd645e3a6c4f5d2a9167ac396022bea5
00:25:34++ env
00:25:34++ sort
00:25:34Archiving artifacts
00:25:58Finished: SUCCESS
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