08:38:46Started by upstream project "Trigger" build number 64708:38:46originally caused by:
08:38:46 Started by user devspace08:38:46Running as SYSTEM
08:38:46Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
08:38:46The recommended git tool is: NONE
08:38:46No credentials specified
08:38:46 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
08:38:46Fetching changes from the remote Git repository
08:38:46 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
08:38:46Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git08:38:46 > git --version # timeout=10
08:38:46 > git --version # 'git version 2.43.5'
08:38:46 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
08:38:47 > git rev-parse origin/merge_ci^{commit} # timeout=10
08:38:47Checking out Revision 6a1d6354160345a82ef41cb06c5d8a3ed0d2fb12 (origin/merge_ci)
08:38:47 > git config core.sparsecheckout # timeout=10
08:38:47 > git checkout -f 6a1d6354160345a82ef41cb06c5d8a3ed0d2fb12 # timeout=10
08:38:47Commit message: "Add version.properties to etc/omero.properties"
08:38:47 > git rev-list --no-walk 3473cccfd95591750e7f40bbac64e05874daf6cb # timeout=10
08:38:47Cleaning workspace
08:38:47 > git rev-parse --verify HEAD # timeout=10
08:38:47Resetting working tree
08:38:47 > git reset --hard # timeout=10
08:38:47 > git clean -fdx # timeout=10
08:38:47Copied 6 artifacts from "OMERO-python-superbuild-build" build number 54008:38:47[OMERO-build] $ /bin/bash -xe /tmp/jenkins13055938363356678628.sh
08:38:47+ mv omero-scripts/dist/omero_scripts-5.9.2.dev0.tar.gz .
08:38:47+ cd src
08:38:47+ export OMERO_BRANCH=merge_ci
08:38:47+ OMERO_BRANCH=merge_ci
08:38:47+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
08:38:47+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
08:38:47+ source /home/omero/settings.env
08:38:47++ OMERO_DB_HOST=pg
08:38:47++ OMERO_DB_USER=postgres
08:38:47++ OMERO_DB_PASS=
08:38:47++ OMERO_ROOT_PASS=omero
08:38:47++ OMERO_DATA_DIR=/OMERO
08:38:47++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
08:38:47+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
08:38:51+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl08:38:51Collecting zeroc-ice==3.6.5
08:38:51 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
08:38:53 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 15.2 MB/s eta 0:00:00
08:38:53Installing collected packages: zeroc-ice
08:38:54Successfully installed zeroc-ice-3.6.5
08:38:5408:38:54[notice] A new release of pip available: 22.3.1 -> 25.2
08:38:54[notice] To update, run: python3.11 -m pip install --upgrade pip
08:38:54+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
08:38:55Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
08:38:55Collecting setuptools<66
08:38:55 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
08:38:55Collecting omero-py
08:38:55 Using cached omero_py-5.21.2-py3-none-any.whl (2.8 MB)
08:38:55Collecting appdirs
08:38:55 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
08:38:55Collecting future
08:38:55 Using cached future-1.0.0-py3-none-any.whl (491 kB)
08:38:56Collecting numpy<3
08:38:56 Using cached numpy-2.3.3-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
08:38:56Collecting Pillow>=10.0.0
08:38:56 Using cached pillow-11.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.6 MB)
08:38:56Collecting PyYAML
08:38:56 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
08:38:56Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
08:38:56Collecting requests
08:38:56 Using cached requests-2.32.5-py3-none-any.whl (64 kB)
08:38:56Collecting portalocker
08:38:56 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
08:38:57Collecting charset_normalizer<4,>=2
08:38:57 Using cached charset_normalizer-3.4.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (150 kB)
08:38:57Collecting idna<4,>=2.5
08:38:57 Using cached idna-3.10-py3-none-any.whl (70 kB)
08:38:57Collecting urllib3<3,>=1.21.1
08:38:57 Using cached urllib3-2.5.0-py3-none-any.whl (129 kB)
08:38:57Collecting certifi>=2017.4.17
08:38:57 Using cached certifi-2025.10.5-py3-none-any.whl (163 kB)
08:38:57Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
08:38:57 Attempting uninstall: setuptools
08:38:57 Found existing installation: setuptools 65.5.1
08:38:57 Uninstalling setuptools-65.5.1:
08:38:57 Successfully uninstalled setuptools-65.5.1
08:39:03Successfully installed Pillow-11.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2025.10.5 charset_normalizer-3.4.3 future-1.0.0 idna-3.10 numpy-2.3.3 omero-py-5.21.2 portalocker-3.2.0 requests-2.32.5 setuptools-65.7.0 urllib3-2.5.0
08:39:0308:39:03[notice] A new release of pip available: 22.3.1 -> 25.2
08:39:03[notice] To update, run: python3.11 -m pip install --upgrade pip
08:39:03+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
08:39:03++ deactivate nondestructive
08:39:03++ '[' -n '' ']'
08:39:03++ '[' -n '' ']'
08:39:03++ hash -r
08:39:03++ '[' -n '' ']'
08:39:03++ unset VIRTUAL_ENV
08:39:03++ unset VIRTUAL_ENV_PROMPT
08:39:03++ '[' '!' nondestructive = nondestructive ']'
08:39:03++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
08:39:03++ export VIRTUAL_ENV
08:39:03++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
08:39:03++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
08:39:03++ export PATH
08:39:03++ '[' -n '' ']'
08:39:03++ '[' -z '' ']'
08:39:03++ _OLD_VIRTUAL_PS1=
08:39:03++ PS1='(omero-virtualenv) '
08:39:03++ export PS1
08:39:03++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
08:39:03++ export VIRTUAL_ENV_PROMPT
08:39:03++ hash -r
08:39:03+ source docs/hudson/OMERO.sh
08:39:03++ set -e
08:39:03++ set -u
08:39:03++ set -x
08:39:03++ source docs/hudson/functions.sh
08:39:03++ echo Building merge_ci
08:39:03Building merge_ci
08:39:03++ python3 ./build.py build-dev release-all
08:39:03Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
08:39:0308:39:03check-ivy:
08:39:03Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
08:39:03Created dir: /home/omero/workspace/OMERO-build/src/target
08:39:03:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
08:39:03:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:39:0408:39:04build-scons:
08:39:04Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
08:39:04No sub-builds to iterate on
08:39:04Entering /home/omero/workspace/OMERO-build/src/components/tools...
08:39:0408:39:04buildlist:
08:39:04:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
08:39:04:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:39:0408:39:04clean:
08:39:04Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:39:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:39:0508:39:05python-clean:
08:39:05WARNING: '' not a valid package name; please use only .-separated package names in setup.py
08:39:05/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-576-6a1d635416-ice36-b543') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
08:39:05 warnings.warn(
08:39:05running clean
08:39:05Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
08:39:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
08:39:0508:39:05python-clean:
08:39:05WARNING: '' not a valid package name; please use only .-separated package names in setup.py
08:39:05/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-576-6a1d635416-ice36-b543') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
08:39:05 warnings.warn(
08:39:05running clean
08:39:05Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
08:39:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
08:39:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:39:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:39:0608:39:06python-clean:
08:39:06WARNING: '' not a valid package name; please use only .-separated package names in setup.py
08:39:06/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-576-6a1d635416-ice36-b543') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
08:39:06 warnings.warn(
08:39:06running clean
08:39:06Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
08:39:06Deleting directory /home/omero/workspace/OMERO-build/src/target
08:39:0608:39:06build-scons:
08:39:06Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
08:39:0608:39:06build:
08:39:06No sub-builds to iterate on
08:39:06Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:39:06Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:39:06Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
08:39:06Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
08:39:0608:39:06tools-init:
08:39:06no-op
08:39:0608:39:06retrieve:
08:39:06:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
08:39:06:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:39:07WARNING: An illegal reflective access operation has occurred
08:39:07WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
08:39:07WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
08:39:07WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
08:39:07WARNING: All illegal access operations will be denied in a future release
08:39:4108:39:41prepare:
08:39:41Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
08:39:41Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
08:39:41Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
08:39:41Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
08:39:41Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
08:39:41Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
08:39:41Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
08:39:41Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
08:39:41Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
08:39:41Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
08:39:41Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
08:39:41Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
08:39:41Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
08:39:41Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
08:39:41Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
08:39:4108:39:41pre-compile:
08:39:41Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
08:39:41Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
08:39:41Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
08:39:41Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
08:39:41Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
08:39:4108:39:41compile:
08:39:41no-op
08:39:4108:39:41package:
08:39:41Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
08:39:4108:39:41install:
08:39:41:: delivering :: omero#omero_client;working@52bf34d160e3 :: 5.6.3-576-6a1d635416-ice36-b543 :: integration :: Thu Oct 09 08:39:06 UTC 2025
08:39:41 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
08:39:41:: publishing :: omero#omero_client
08:39:41 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-576-6a1d635416-ice36-b543/omero_client-5.6.3-576-6a1d635416-ice36-b543.jar
08:39:41 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-576-6a1d635416-ice36-b543/omero_client-5.6.3-576-6a1d635416-ice36-b543.xml
08:39:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:39:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:39:4208:39:42retrieve:
08:39:42:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
08:39:42:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:39:42Entering /home/omero/workspace/OMERO-build/src/components/tools...
08:39:4208:39:42dist:
08:39:42Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
08:39:42Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
08:39:42Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
08:39:42Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.2.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
08:39:42Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
08:39:42Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
08:39:42Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
08:39:42Entering /home/omero/workspace/OMERO-build/src/components/tests...
08:39:42Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
08:39:4208:39:42copy-licenses:
08:39:42Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
08:39:42Created dir: /home/omero/workspace/OMERO-build/src/dist/share
08:39:42Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
08:39:4208:39:42copy-history:
08:39:42Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
08:39:4208:39:42copy-etc:
08:39:42Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
08:39:42Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
08:39:4208:39:42copy-sql:
08:39:42Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
08:39:4708:39:47copy-server:
08:39:47 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
08:39:4708:39:47copy-client:
08:39:47Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
08:39:48 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
08:39:4808:39:48update-version:
08:39:48Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
08:39:4808:39:48create-workdirs:
08:39:48Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
08:39:48Created dir: /home/omero/workspace/OMERO-build/src/dist/var
08:39:4808:39:48copy-luts:
08:39:48Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
08:39:48Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
08:39:4808:39:48test-compile:
08:39:48:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:39:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
08:39:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:39:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:39:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:39:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:39:49Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
08:39:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
08:39:4908:39:49testng-init:
08:39:49:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
08:39:49:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:39:5208:39:51,946 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
08:39:5208:39:51,949 |-INFO in ch.qos.logback.classic.util.ContextInitializer@33c4fc94 - No custom configurators were discovered as a service.
08:39:5208:39:51,949 |-INFO in ch.qos.logback.classic.util.ContextInitializer@33c4fc94 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
08:39:5208:39:51,952 |-INFO in ch.qos.logback.classic.util.ContextInitializer@33c4fc94 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
08:39:5208:39:51,952 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
08:39:5208:39:51,952 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
08:39:5208:39:51,953 |-INFO in ch.qos.logback.classic.util.ContextInitializer@33c4fc94 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
08:39:5208:39:51,953 |-INFO in ch.qos.logback.classic.util.ContextInitializer@33c4fc94 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
08:39:5208:39:51,955 |-INFO in ch.qos.logback.classic.util.ContextInitializer@33c4fc94 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
08:39:5208:39:51,955 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
08:39:5208:39:51,955 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
08:39:5208:39:51,956 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7ad9ed91 - Resource [logback.xml] occurs multiple times on the classpath.
08:39:5208:39:51,956 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7ad9ed91 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
08:39:5208:39:51,956 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7ad9ed91 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
08:39:5208:39:52,148 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
08:39:5208:39:52,148 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
08:39:5208:39:52,167 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
08:39:5208:39:52,168 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@60362b7 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
08:39:5208:39:52,168 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@60362b7 - Please move "immediateFlush" property into the enclosing appender.
08:39:5208:39:52,227 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@60362b7 - Setting the "immediateFlush" property of the enclosing appender to true
08:39:5208:39:52,228 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
08:39:5208:39:52,228 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
08:39:5208:39:52,228 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
08:39:5208:39:52,228 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
08:39:5208:39:52,228 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
08:39:5208:39:52,228 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
08:39:5208:39:52,229 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@18809db8 - End of configuration.
08:39:5208:39:52,231 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@c34e260 - Registering current configuration as safe fallback point
08:39:5208:39:52,231 |-INFO in ch.qos.logback.classic.util.ContextInitializer@33c4fc94 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 276 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
08:39:5208:39:52lifecycle.test-compile:
08:39:52Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
08:39:52Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
08:39:52warning: [options] bootstrap class path not set in conjunction with -source 8
08:39:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:39:53import omero.grid.RawAccessRequest;
08:39:53 ^
08:39:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:39:53import omero.grid.RawAccessRequest;
08:39:53 ^
08:39:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:39:53import omero.grid.RawAccessRequest;
08:39:53 ^
08:39:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
08:39:53import omero.model.ImportJob;
08:39:53 ^
08:39:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
08:39:53import omero.model.ImportJobI;
08:39:53 ^
08:39:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
08:39:54 IObject link = (IObject) linkClass.newInstance();
08:39:54 ^
08:39:54 where T is a type-variable:
08:39:54 T extends Object declared in class Class
08:39:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
08:39:54 T copy = (T) obj.getClass().newInstance();
08:39:54 ^
08:39:54 where T is a type-variable:
08:39:54 T extends Object declared in class Class
08:39:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:39:54 RawAccessRequest raw = new RawAccessRequest();
08:39:54 ^
08:39:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:39:54 RawAccessRequest raw = new RawAccessRequest();
08:39:54 ^
08:39:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
08:39:54 raw.repoUuid = legacy.root().getHash().getValue();
08:39:54 ^
08:39:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
08:39:54 raw.command = "rm";
08:39:54 ^
08:39:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
08:39:54 raw.args = Arrays.asList(path);
08:39:54 ^
08:39:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
08:39:55 final IObject link = linkClass.newInstance();
08:39:55 ^
08:39:55 where T is a type-variable:
08:39:55 T extends Object declared in class Class
08:39:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
08:39:55 originalLink.setChild(annotationClass.newInstance());
08:39:55 ^
08:39:55 where T is a type-variable:
08:39:55 T extends Object declared in class Class
08:39:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
08:39:55 RoiResult r = svc.findByImage(id, new RoiOptions());
08:39:55 ^
08:39:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:39:55 final RawAccessRequest request = new RawAccessRequest();
08:39:55 ^
08:39:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:39:55 final RawAccessRequest request = new RawAccessRequest();
08:39:55 ^
08:39:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
08:39:55 request.repoUuid = repo.root().getHash().getValue();
08:39:55 ^
08:39:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
08:39:55 request.command = "exists";
08:39:55 ^
08:39:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
08:39:55 request.args = Collections.singletonList(dirPath);
08:39:55 ^
08:39:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:39:55 final RawAccessRequest request = new RawAccessRequest();
08:39:55 ^
08:39:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:39:55 final RawAccessRequest request = new RawAccessRequest();
08:39:55 ^
08:39:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
08:39:55 request.repoUuid = repo.root().getHash().getValue();
08:39:55 ^
08:39:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
08:39:55 request.command = "exists";
08:39:55 ^
08:39:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
08:39:55 request.args = Collections.singletonList(dirName);
08:39:55 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
08:39:56 final ImportJob importJob = new ImportJobI();
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
08:39:56 final ImportJob importJob = new ImportJobI();
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
08:39:56 importJob.setImageName(omero.rtypes.rstring(name));
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
08:39:56 importJob.setImageDescription(omero.rtypes.rstring(desc));
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
08:39:56 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
08:39:56 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
08:39:56 final String savedName = sent.getImageName().getValue().toString();
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
08:39:56 final String savedDesc = sent.getImageDescription().getValue().toString();
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
08:39:56 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
08:39:56 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
08:39:56 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
08:39:56 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
08:39:56 RoiResult r = svc.findByImage(image.getId().getValue(),
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:39:56 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:39:56 l = svc.getRoiMeasurements(image.getId().getValue(), options);
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:39:56 l = svc.getRoiMeasurements(image.getId().getValue(), options);
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:39:56 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
08:39:56 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:39:56 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
08:39:56 table = svc.getTable(f.getId().getValue());
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
08:39:56 RoiResult r = svc.findByImage(image.getId().getValue(),
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
08:39:56 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
08:39:56 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
08:39:56 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
08:39:56 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
08:39:56 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
08:39:56 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
08:39:56 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
08:39:56 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
08:39:56 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
08:39:56 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
08:39:56 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
08:39:56 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
08:39:56 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
08:39:56 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
08:39:56 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
08:39:56 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
08:39:56 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
08:39:56 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
08:39:56 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
08:39:56 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
08:39:56 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
08:39:56 svc.getShapeStatsRestricted(
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
08:39:56 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:39:56 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
08:39:56 request.typesToIgnore = Collections.singletonList("TagAnnotation");
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
08:39:56 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
08:39:56 request.typesToIgnore = Collections.singletonList("Annotation");
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
08:39:56 request.typesToIgnore = Collections.singletonList("Annotation");
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:39:56 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:39:56 p2.setRelatedTo(p1);
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:39:56 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:39:56 pixels1.setRelatedTo(pixels2);
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:39:56 Pixels pixels = pixels1.getRelatedTo();
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:39:56 Assert.assertNull(pixels1.getRelatedTo());
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:39:56 pixels1.setRelatedTo(pixels2);
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:39:56 Pixels pixels = pixels1.getRelatedTo();
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:39:56 Assert.assertNull(pixels1.getRelatedTo());
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:39:56 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:39:56 l = svc.getRoiMeasurements(image.getId().getValue(), options);
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:39:56 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:39:56 ^
08:39:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:39:56 l = svc.getRoiMeasurements(image.getId().getValue(), options);
08:39:56 ^
08:39:57Note: Some input files use unchecked or unsafe operations.
08:39:57Note: Recompile with -Xlint:unchecked for details.
08:39:5788 warnings
08:39:57Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_2059380638.tmp
08:39:57Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
08:39:57:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:39:57:: delivering :: omero#OmeroJava-test;working@52bf34d160e3 :: 5.6.3-576-6a1d635416-ice36-b543 :: integration :: Thu Oct 09 08:39:49 UTC 2025
08:39:57 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
08:39:57:: publishing :: omero#OmeroJava-test
08:39:57 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-576-6a1d635416-ice36-b543.jar
08:39:57 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-576-6a1d635416-ice36-b543.xml
08:39:5708:39:57build-eclipse:
08:39:57No sub-builds to iterate on
08:39:57Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
08:39:5708:39:57retrieve:
08:39:57:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
08:39:57:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:39:5908:39:59prepare:
08:39:59Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
08:40:0008:40:00release-clients:
08:40:00Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-576-6a1d635416-ice36-b543.zip
08:40:0508:40:05release-zip:
08:40:05Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-576-6a1d635416-ice36-b543.zip
08:40:1508:40:15BUILD SUCCESSFUL
08:40:15Total time: 1 minute 12 seconds
08:40:15++ '[' -d .git ']'
08:40:15++ python3 ./build.py release-src
08:40:15Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
08:40:1608:40:16release-src-git:
08:40:16Releasing openmicroscopy-5.6.3-576-6a1d635416-ice36-b543
08:40:17 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-576-6a1d635416-ice36-b543.zip
08:40:17 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-576-6a1d635416-ice36-b543-base.zip
08:40:1808:40:18BUILD SUCCESSFUL
08:40:18Total time: 3 seconds
08:40:18++ echo BUILD_NUMBER=543
08:40:18++ echo OMERO_BRANCH=merge_ci
08:40:18++ git_info
08:40:18+++ git rev-parse HEAD
08:40:18++ HEAD=6a1d6354160345a82ef41cb06c5d8a3ed0d2fb12
08:40:18++ git log --max-count=1 6a1d6354160345a82ef41cb06c5d8a3ed0d2fb12
08:40:18++ env
08:40:18++ sort
08:40:19Archiving artifacts
08:40:42Finished: SUCCESS
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