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+ export BASE_REPO=omero-matlab.git
+ BASE_REPO=omero-matlab.git
+ export BASE_BRANCH=master
+ BASE_BRANCH=master
+ export VERSION_LOG=/home/omero/workspace/OMERO-matlab-push/build/version.tsv
+ VERSION_LOG=/home/omero/workspace/OMERO-matlab-push/build/version.tsv
+ . build/venv/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ unset VIRTUAL_ENV_PROMPT
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/omero/workspace/OMERO-matlab-push/build/venv
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/home/omero/workspace/OMERO-matlab-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ PS1='(venv) '
++ export PS1
++ VIRTUAL_ENV_PROMPT='(venv) '
++ export VIRTUAL_ENV_PROMPT
++ hash -r
+ '[' merge_ci '!=' null ']'
+ export PUSH_BRANCH=merge_ci
+ PUSH_BRANCH=merge_ci
+ '[' null '!=' null ']'
+ export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment'
+ STATUS=success-only
+ MERGE_OPTIONS='-vvv --no-ask --reset --comment'
+ bash build/build-infra-master/recursive-merge
Merge base repository (no submodule updates)
2025-07-22 00:46:15,969 [  scc.config] DEBUG Found github.token
2025-07-22 00:46:15,971 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-22 00:46:16,184 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-07-22 00:46:16,435 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-22 00:46:16,615 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-07-22 00:46:16,866 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-22 00:46:17,029 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2025-07-22 00:46:17,029 [      scc.gh] DEBUG 4998 remaining from 5000 (Reset at 01:07
2025-07-22 00:46:17,030 [     scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2025-07-22 00:46:17,032 [     scc.git] DEBUG Check current status
2025-07-22 00:46:17,032 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2025-07-22 00:46:17,035 [     scc.git] DEBUG 7d4ddff change date
2025-07-22 00:46:17,035 [     scc.git] DEBUG Calling 'git submodule status'
2025-07-22 00:46:17,076 [  scc.config] DEBUG Found remote.origin.url
2025-07-22 00:46:17,280 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-22 00:46:17,585 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-matlab HTTP/1.1" 200 None
2025-07-22 00:46:17,837 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-22 00:46:18,071 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2025-07-22 00:46:18,323 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-22 00:46:18,520 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2025-07-22 00:46:18,771 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-22 00:46:18,963 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2025-07-22 00:46:19,215 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-22 00:46:19,395 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2025-07-22 00:46:19,396 [     scc.git] DEBUG Resetting...
2025-07-22 00:46:19,396 [     scc.git] DEBUG Calling 'git reset --hard HEAD'
2025-07-22 00:46:19,400 [     scc.git] DEBUG HEAD is now at 7d4ddff change date
2025-07-22 00:46:19,400 [     scc.git] DEBUG Calling 'git submodule update --recursive'
2025-07-22 00:46:19,440 [     scc.git] DEBUG Check current status
2025-07-22 00:46:19,440 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2025-07-22 00:46:19,442 [     scc.git] DEBUG 7d4ddff change date
2025-07-22 00:46:19,442 [     scc.git] DEBUG Calling 'git submodule status'
2025-07-22 00:46:19,482 [   scc.merge] INFO  Merging Pull Request(s) based on master
2025-07-22 00:46:19,482 [   scc.merge] INFO  Including Pull Request(s) opened by any public member of the organization
2025-07-22 00:46:19,482 [   scc.merge] INFO  Including Pull Request(s) labelled as include or dependencies
2025-07-22 00:46:19,482 [   scc.merge] INFO  Excluding Pull Request(s) staged as draft
2025-07-22 00:46:19,483 [   scc.merge] INFO  Excluding Pull Request(s) labelled as exclude or breaking
2025-07-22 00:46:19,483 [    scc.repo] DEBUG ## PRs found:
2025-07-22 00:46:19,646 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-22 00:46:19,923 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-matlab/pulls HTTP/1.1" 200 None
2025-07-22 00:46:20,175 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-22 00:46:20,426 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-matlab/issues/38 HTTP/1.1" 200 None
2025-07-22 00:46:20,427 [    scc.repo] DEBUG   - PR 38 jburel 'Update dependency'
2025-07-22 00:46:20,427 [    scc.repo] DEBUG ## Branches found:
2025-07-22 00:46:20,427 [     scc.git] DEBUG Get sha1 of %s
2025-07-22 00:46:20,427 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-22 00:46:20,429 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-07-22 00:46:20,432 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-07-22 00:46:20,432 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-07-22 00:46:20,434 [     scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-07-22 00:46:20,437 [     scc.git] DEBUG Already up to date.

2025-07-22 00:46:20,437 [     scc.git] DEBUG Calling 'git fetch origin pull/38/head'
2025-07-22 00:46:20,728 [     scc.git] DEBUG From https://github.com/ome/omero-matlab
2025-07-22 00:46:20,728 [     scc.git] DEBUG  * branch            refs/pull/38/head -> FETCH_HEAD
2025-07-22 00:46:20,733 [     scc.git] DEBUG ## Unique users: []
2025-07-22 00:46:20,733 [     scc.git] DEBUG Get sha1 of %s
2025-07-22 00:46:20,733 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-22 00:46:20,735 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...a8d38c69bde53075007fff870c8bb5f671b87737'
2025-07-22 00:46:20,738 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-22 00:46:20,740 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 38 (Update dependency) a8d38c69bde53075007fff870c8bb5f671b87737'
2025-07-22 00:46:20,747 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2025-07-22 00:46:20,750 [     scc.git] DEBUG  .github/workflows/gradle.yml | 19 ++++++++++++-------
2025-07-22 00:46:20,750 [     scc.git] DEBUG  build.gradle                 |  4 ++--
2025-07-22 00:46:20,750 [     scc.git] DEBUG  2 files changed, 14 insertions(+), 9 deletions(-)
2025-07-22 00:46:20,751 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-22 00:46:20,913 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-07-22 00:46:20,913 [     scc.git] DEBUG Calling 'git submodule update'
2025-07-22 00:46:20,952 [     scc.git] DEBUG Get sha1 of %s
2025-07-22 00:46:20,952 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-22 00:46:20,954 [     scc.git] DEBUG Calling 'git status --porcelain'
2025-07-22 00:46:20,958 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7ff58f2a4910> has no local changes
2025-07-22 00:46:20,958 [     scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone

Repository: ome/omero-matlab
Already up to date.

Merged PRs:
  - PR 38 jburel 'Update dependency'

Generated by OMERO-matlab-push#437 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-matlab-push/437/)'
2025-07-22 00:46:20,964 [     scc.git] DEBUG [detached HEAD 07c21aa] merge master -Dorg -Snone
2025-07-22 00:46:20,965 [   scc.merge] INFO  Repository: ome/omero-matlab
2025-07-22 00:46:20,965 [   scc.merge] INFO  Already up to date.
2025-07-22 00:46:20,965 [   scc.merge] INFO  
2025-07-22 00:46:20,965 [   scc.merge] INFO  Merged PRs:
2025-07-22 00:46:20,965 [   scc.merge] INFO    - PR 38 jburel 'Update dependency'
2025-07-22 00:46:20,965 [   scc.merge] INFO  
2025-07-22 00:46:20,965 [   scc.merge] DEBUG Cleaning remote branches created for merging
2025-07-22 00:46:20,965 [     scc.git] DEBUG Calling 'git remote'
Merge all submodules2025-07-22 00:46:21,401 [  scc.config] DEBUG Found github.token
2025-07-22 00:46:21,402 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-22 00:46:21,623 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-07-22 00:46:21,875 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-22 00:46:22,060 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-07-22 00:46:22,311 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-22 00:46:22,483 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2025-07-22 00:46:22,484 [      scc.gh] DEBUG 4988 remaining from 5000 (Reset at 01:07
2025-07-22 00:46:22,485 [     scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2025-07-22 00:46:22,487 [     scc.git] DEBUG Check current status
2025-07-22 00:46:22,487 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2025-07-22 00:46:22,490 [     scc.git] DEBUG 07c21aa merge master -Dorg -Snone
2025-07-22 00:46:22,490 [     scc.git] DEBUG Calling 'git submodule status'
2025-07-22 00:46:22,531 [  scc.config] DEBUG Found remote.origin.url
2025-07-22 00:46:22,735 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-22 00:46:23,012 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-matlab HTTP/1.1" 200 None
2025-07-22 00:46:23,264 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-22 00:46:23,491 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2025-07-22 00:46:23,742 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-22 00:46:23,938 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2025-07-22 00:46:24,190 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-22 00:46:24,398 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2025-07-22 00:46:24,650 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-22 00:46:24,830 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2025-07-22 00:46:24,830 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-07-22 00:46:24,872 [     scc.git] DEBUG Resetting...
2025-07-22 00:46:24,872 [     scc.git] DEBUG Calling 'git reset --hard HEAD'
2025-07-22 00:46:24,876 [     scc.git] DEBUG HEAD is now at 07c21aa merge master -Dorg -Snone
2025-07-22 00:46:24,877 [     scc.git] DEBUG Calling 'git submodule update --recursive'
2025-07-22 00:46:24,917 [     scc.git] DEBUG Check current status
2025-07-22 00:46:24,917 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2025-07-22 00:46:24,919 [     scc.git] DEBUG 07c21aa merge master -Dorg -Snone
2025-07-22 00:46:24,919 [     scc.git] DEBUG Calling 'git submodule status'
2025-07-22 00:46:24,956 [   scc.merge] INFO  Merging Pull Request(s) based on master
2025-07-22 00:46:24,956 [   scc.merge] INFO  Including Pull Request(s) opened by any public member of the organization
2025-07-22 00:46:24,956 [   scc.merge] INFO  Including Pull Request(s) labelled as include or dependencies
2025-07-22 00:46:24,956 [   scc.merge] INFO  Excluding Pull Request(s) staged as draft
2025-07-22 00:46:24,956 [   scc.merge] INFO  Excluding Pull Request(s) labelled as exclude or breaking
2025-07-22 00:46:24,956 [   scc.merge] INFO  Excluding Pull Request(s) without successful status
2025-07-22 00:46:24,956 [    scc.repo] DEBUG ## PRs found:
2025-07-22 00:46:25,081 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-22 00:46:25,367 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-matlab/pulls HTTP/1.1" 200 None
2025-07-22 00:46:25,619 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-22 00:46:25,890 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-matlab/issues/38 HTTP/1.1" 200 None
2025-07-22 00:46:26,141 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-22 00:46:26,439 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-matlab/commits/a8d38c69bde53075007fff870c8bb5f671b87737 HTTP/1.1" 200 None
2025-07-22 00:46:26,690 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-22 00:46:26,921 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-matlab/commits/a8d38c69bde53075007fff870c8bb5f671b87737/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-07-22 00:46:27,172 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-22 00:46:27,443 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-matlab/commits/a8d38c69bde53075007fff870c8bb5f671b87737/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-07-22 00:46:27,694 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-22 00:46:27,976 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-matlab/commits/a8d38c69bde53075007fff870c8bb5f671b87737 HTTP/1.1" 200 None
2025-07-22 00:46:28,228 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-22 00:46:28,408 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-matlab/statuses/a8d38c69bde53075007fff870c8bb5f671b87737?per_page=1 HTTP/1.1" 200 2
2025-07-22 00:46:28,409 [    scc.repo] DEBUG   - PR 38 jburel 'Update dependency'
2025-07-22 00:46:28,409 [    scc.repo] DEBUG ## Branches found:
2025-07-22 00:46:28,409 [     scc.git] DEBUG Get sha1 of %s
2025-07-22 00:46:28,409 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-22 00:46:28,412 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-07-22 00:46:28,414 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-07-22 00:46:28,414 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-07-22 00:46:28,417 [     scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-07-22 00:46:28,420 [     scc.git] DEBUG Already up to date.

2025-07-22 00:46:28,420 [     scc.git] DEBUG Calling 'git fetch origin pull/38/head'
2025-07-22 00:46:28,705 [     scc.git] DEBUG From https://github.com/ome/omero-matlab
2025-07-22 00:46:28,705 [     scc.git] DEBUG  * branch            refs/pull/38/head -> FETCH_HEAD
2025-07-22 00:46:28,709 [     scc.git] DEBUG ## Unique users: []
2025-07-22 00:46:28,710 [     scc.git] DEBUG Get sha1 of %s
2025-07-22 00:46:28,710 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-22 00:46:28,712 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...a8d38c69bde53075007fff870c8bb5f671b87737'
2025-07-22 00:46:28,715 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-22 00:46:28,717 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 38 (Update dependency) a8d38c69bde53075007fff870c8bb5f671b87737'
2025-07-22 00:46:28,719 [     scc.git] DEBUG Already up to date.
2025-07-22 00:46:28,721 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-22 00:46:28,911 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-07-22 00:46:28,911 [     scc.git] DEBUG Calling 'git submodule update'
2025-07-22 00:46:28,951 [     scc.git] DEBUG Get sha1 of %s
2025-07-22 00:46:28,951 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-22 00:46:28,954 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-07-22 00:46:28,991 [     scc.git] DEBUG Calling 'git status --porcelain'
2025-07-22 00:46:28,995 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7fedddbd4690> has no local changes
2025-07-22 00:46:28,995 [     scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only

Repository: ome/omero-matlab
Already up to date.

Merged PRs:
  - PR 38 jburel 'Update dependency'

Generated by OMERO-matlab-push#437 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-matlab-push/437/)'
2025-07-22 00:46:29,001 [     scc.git] DEBUG [detached HEAD 43e7c09] merge master -Dorg -Ssuccess-only
2025-07-22 00:46:29,001 [   scc.merge] INFO  Repository: ome/omero-matlab
2025-07-22 00:46:29,001 [   scc.merge] INFO  Already up to date.
2025-07-22 00:46:29,002 [   scc.merge] INFO  
2025-07-22 00:46:29,002 [   scc.merge] INFO  Merged PRs:
2025-07-22 00:46:29,002 [   scc.merge] INFO    - PR 38 jburel 'Update dependency'
2025-07-22 00:46:29,002 [   scc.merge] INFO  
2025-07-22 00:46:29,002 [   scc.merge] DEBUG Cleaning remote branches created for merging
2025-07-22 00:46:29,002 [     scc.git] DEBUG Calling 'git remote'
Update component versions
Updating omero-gateway from 5.10.1 to 5.10.4-SNAPSHOT
Commit all component version changes
[detached HEAD d714950] Update component versions
 1 file changed, 1 insertion(+), 1 deletion(-)
2025-07-22 00:46:35,347 [    scc.push] INFO  Merged branch pushed to https://github.com/snoopycrimecop/omero-matlab/tree/merge_ci