Skipping 235 KB..
Full LogTestTestTestTestTestTestTestTestTestTestTestTestTest
2025-08-30 00:45:19,111 [ scc.git] DEBUG [detached HEAD 724f3ad] merge master -Dorg -Ssuccess-only
2025-08-30 00:45:19,111 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-30 00:45:19,111 [ scc.repo] DEBUG ## PRs found:
2025-08-30 00:45:19,271 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:19,563 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None
2025-08-30 00:45:19,816 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:20,084 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None
2025-08-30 00:45:20,336 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:20,604 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None
2025-08-30 00:45:20,856 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:21,209 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-08-30 00:45:21,462 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:21,720 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-30 00:45:21,972 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:22,199 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-08-30 00:45:22,451 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:22,649 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2
2025-08-30 00:45:22,649 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-08-30 00:45:22,901 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:23,159 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None
2025-08-30 00:45:23,411 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:23,673 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None
2025-08-30 00:45:23,926 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:24,223 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-08-30 00:45:24,475 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:24,753 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-30 00:45:25,005 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:25,317 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-08-30 00:45:25,570 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:25,791 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2025-08-30 00:45:25,791 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-08-30 00:45:25,791 [ scc.repo] DEBUG ## Branches found:
2025-08-30 00:45:25,791 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-08-30 00:45:25,792 [ scc.git] DEBUG Get sha1 of %s
2025-08-30 00:45:25,792 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:45:25,795 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-30 00:45:25,797 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-30 00:45:25,797 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-30 00:45:25,800 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-30 00:45:25,808 [ scc.git] DEBUG Updating 3cd120c..55060a2
2025-08-30 00:45:26,043 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:26,452 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2025-08-30 00:45:26,453 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2025-08-30 00:45:26,745 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-08-30 00:45:26,745 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2025-08-30 00:45:26,749 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2025-08-30 00:45:27,026 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-08-30 00:45:27,026 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2025-08-30 00:45:27,030 [ scc.git] DEBUG ## Unique users: []
2025-08-30 00:45:27,030 [ scc.git] DEBUG Get sha1 of %s
2025-08-30 00:45:27,030 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:45:27,033 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-08-30 00:45:27,037 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:45:27,040 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-08-30 00:45:27,053 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2025-08-30 00:45:27,053 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2025-08-30 00:45:27,053 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-08-30 00:45:27,053 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-08-30 00:45:27,053 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-30 00:45:27,054 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-30 00:45:27,056 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-30 00:45:27,061 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-08-30 00:45:27,064 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:27,269 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-30 00:45:27,269 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-08-30 00:45:27,274 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-30 00:45:27,277 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#520](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/520/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/520/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/populate.py
- src/omero_metadata/cli.py
--conflicts
2025-08-30 00:45:27,280 [ scc.config] DEBUG Found github.token
2025-08-30 00:45:27,280 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2025-08-30 00:45:27,280 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2025-08-30 00:45:27,284 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:45:27,287 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2025-08-30 00:45:27,302 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-08-30 00:45:27,302 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-08-30 00:45:27,302 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2025-08-30 00:45:27,303 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-30 00:45:27,303 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-30 00:45:27,306 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-30 00:45:27,311 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-08-30 00:45:27,522 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:27,732 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-30 00:45:27,733 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7'
2025-08-30 00:45:27,737 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-30 00:45:27,740 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#520](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/520/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/520/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2025-08-30 00:45:27,742 [ scc.config] DEBUG Found github.token
2025-08-30 00:45:27,743 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2025-08-30 00:45:27,743 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-30 00:45:27,784 [ scc.git] DEBUG Get sha1 of %s
2025-08-30 00:45:27,784 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:45:27,787 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-30 00:45:27,829 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-30 00:45:27,833 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7f5996a7d0> has no local changes
2025-08-30 00:45:27,833 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#520 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/520/)'
2025-08-30 00:45:27,840 [ scc.git] DEBUG [detached HEAD 3ad1bdf] merge master -Dorg -Ssuccess-only
2025-08-30 00:45:27,841 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-30 00:45:27,841 [ scc.repo] DEBUG ## PRs found:
2025-08-30 00:45:27,985 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:28,330 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2025-08-30 00:45:28,597 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:28,870 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2025-08-30 00:45:29,123 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:29,419 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-08-30 00:45:29,672 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:29,947 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-30 00:45:30,199 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:30,481 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-30 00:45:30,733 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:31,032 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-08-30 00:45:31,284 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:31,495 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2025-08-30 00:45:31,495 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-30 00:45:31,747 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:31,999 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2025-08-30 00:45:31,999 [ scc.repo] DEBUG # ... Include label: dependencies
2025-08-30 00:45:32,251 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:32,599 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-08-30 00:45:32,852 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:33,153 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-30 00:45:33,405 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:33,756 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-30 00:45:34,009 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:34,335 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-08-30 00:45:34,588 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:34,801 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2025-08-30 00:45:34,801 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-08-30 00:45:35,053 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:35,306 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2025-08-30 00:45:35,307 [ scc.repo] DEBUG # ... Include label: dependencies
2025-08-30 00:45:35,558 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:35,879 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-08-30 00:45:36,132 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:36,442 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-30 00:45:36,694 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:37,003 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-30 00:45:37,256 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:37,591 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-08-30 00:45:37,843 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:38,054 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2025-08-30 00:45:38,054 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-08-30 00:45:38,306 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:38,570 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2025-08-30 00:45:38,822 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:39,091 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2025-08-30 00:45:39,344 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:39,583 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2025-08-30 00:45:39,835 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:40,103 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2025-08-30 00:45:40,355 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:40,673 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2025-08-30 00:45:40,925 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:41,181 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2025-08-30 00:45:41,434 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:41,712 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2025-08-30 00:45:41,714 [ scc.repo] DEBUG ## Branches found:
2025-08-30 00:45:41,714 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-08-30 00:45:41,714 [ scc.git] DEBUG Get sha1 of %s
2025-08-30 00:45:41,714 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:45:41,717 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-30 00:45:41,720 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-30 00:45:41,720 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-30 00:45:41,723 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-30 00:45:41,726 [ scc.git] DEBUG Already up to date.
2025-08-30 00:45:41,726 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2025-08-30 00:45:42,011 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-08-30 00:45:42,012 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2025-08-30 00:45:42,017 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2025-08-30 00:45:42,299 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-08-30 00:45:42,299 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2025-08-30 00:45:42,304 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2025-08-30 00:45:42,579 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-08-30 00:45:42,579 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2025-08-30 00:45:42,584 [ scc.git] DEBUG ## Unique users: []
2025-08-30 00:45:42,584 [ scc.git] DEBUG Get sha1 of %s
2025-08-30 00:45:42,584 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:45:42,586 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2025-08-30 00:45:42,589 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:45:42,591 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2025-08-30 00:45:42,600 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-30 00:45:42,603 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2025-08-30 00:45:42,604 [ scc.git] DEBUG package.json | 2 +-
2025-08-30 00:45:42,604 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2025-08-30 00:45:42,606 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:42,813 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-30 00:45:42,813 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2025-08-30 00:45:42,816 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:45:42,819 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2025-08-30 00:45:42,829 [ scc.git] DEBUG Auto-merging package-lock.json
2025-08-30 00:45:42,829 [ scc.git] DEBUG Auto-merging package.json
2025-08-30 00:45:42,830 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-30 00:45:42,834 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2025-08-30 00:45:42,834 [ scc.git] DEBUG package.json | 2 +-
2025-08-30 00:45:42,834 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2025-08-30 00:45:43,065 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:43,279 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-30 00:45:43,279 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-08-30 00:45:43,283 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:45:43,285 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-08-30 00:45:43,294 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-30 00:45:43,297 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-08-30 00:45:43,297 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-08-30 00:45:43,531 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:43,743 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-30 00:45:43,744 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-30 00:45:43,787 [ scc.git] DEBUG Get sha1 of %s
2025-08-30 00:45:43,787 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:45:43,789 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-30 00:45:43,830 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-30 00:45:43,834 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7f59a12090> has no local changes
2025-08-30 00:45:43,834 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#520 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/520/)'
2025-08-30 00:45:43,841 [ scc.git] DEBUG [detached HEAD 6714524] merge master -Dorg -Ssuccess-only
2025-08-30 00:45:43,841 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-30 00:45:43,841 [ scc.repo] DEBUG ## PRs found:
2025-08-30 00:45:43,996 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:44,217 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 2
2025-08-30 00:45:44,217 [ scc.repo] DEBUG ## Branches found:
2025-08-30 00:45:44,217 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-08-30 00:45:44,218 [ scc.git] DEBUG Get sha1 of %s
2025-08-30 00:45:44,218 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:45:44,220 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-30 00:45:44,223 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-30 00:45:44,223 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-30 00:45:44,226 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-30 00:45:44,229 [ scc.git] DEBUG Already up to date.
2025-08-30 00:45:44,229 [ scc.git] DEBUG ## Unique users: []
2025-08-30 00:45:44,229 [ scc.git] DEBUG Get sha1 of %s
2025-08-30 00:45:44,229 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:45:44,232 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-30 00:45:44,272 [ scc.git] DEBUG Get sha1 of %s
2025-08-30 00:45:44,272 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:45:44,274 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-30 00:45:44,313 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-30 00:45:44,316 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7f5802d650> has no local changes
2025-08-30 00:45:44,316 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Generated by OMERO-plugins-push#520 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/520/)'
2025-08-30 00:45:44,323 [ scc.git] DEBUG [detached HEAD d98e912] merge master -Dorg -Ssuccess-only
2025-08-30 00:45:44,323 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-30 00:45:44,323 [ scc.repo] DEBUG ## PRs found:
2025-08-30 00:45:44,470 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:44,773 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2025-08-30 00:45:45,026 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:45,320 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33 HTTP/1.1" 200 None
2025-08-30 00:45:45,573 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:45,829 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33/comments HTTP/1.1" 200 None
2025-08-30 00:45:46,081 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:46,426 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-08-30 00:45:46,678 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:46,932 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-30 00:45:47,184 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:47,437 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-30 00:45:47,689 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:47,990 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-08-30 00:45:48,242 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:48,493 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/1122baea98746effd4eb59deed25870f673ce3d3?per_page=1 HTTP/1.1" 200 None
2025-08-30 00:45:48,745 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:49,079 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-08-30 00:45:49,331 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:49,562 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/status HTTP/1.1" 200 None
2025-08-30 00:45:49,563 [ scc.repo] DEBUG - PR 33 jo-mueller 'Add roi to array functions'
2025-08-30 00:45:49,814 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:50,080 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2025-08-30 00:45:50,081 [ scc.repo] DEBUG ## Branches found:
2025-08-30 00:45:50,081 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-08-30 00:45:50,081 [ scc.git] DEBUG Get sha1 of %s
2025-08-30 00:45:50,081 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:45:50,084 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-30 00:45:50,086 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-30 00:45:50,086 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-30 00:45:50,089 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-30 00:45:50,093 [ scc.git] DEBUG Already up to date.
2025-08-30 00:45:50,093 [ scc.git] DEBUG Calling 'git fetch origin pull/33/head'
2025-08-30 00:45:50,385 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2025-08-30 00:45:50,385 [ scc.git] DEBUG * branch refs/pull/33/head -> FETCH_HEAD
2025-08-30 00:45:50,389 [ scc.git] DEBUG ## Unique users: []
2025-08-30 00:45:50,389 [ scc.git] DEBUG Get sha1 of %s
2025-08-30 00:45:50,389 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:45:50,391 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1122baea98746effd4eb59deed25870f673ce3d3'
2025-08-30 00:45:50,395 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:45:50,397 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 33 (Add roi to array functions) 1122baea98746effd4eb59deed25870f673ce3d3'
2025-08-30 00:45:50,405 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-30 00:45:50,408 [ scc.git] DEBUG setup.py | 4 +-
2025-08-30 00:45:50,408 [ scc.git] DEBUG src/omero_rois/__init__.py | 4 +
2025-08-30 00:45:50,408 [ scc.git] DEBUG src/omero_rois/library.py | 204 +++++++++++++++++++++++++++++++++++++++++++--
2025-08-30 00:45:50,408 [ scc.git] DEBUG 3 files changed, 203 insertions(+), 9 deletions(-)
2025-08-30 00:45:50,411 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:50,604 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-30 00:45:50,605 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-30 00:45:50,647 [ scc.git] DEBUG Get sha1 of %s
2025-08-30 00:45:50,647 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:45:50,649 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-30 00:45:50,688 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-30 00:45:50,692 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7f59c13450> has no local changes
2025-08-30 00:45:50,692 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
Generated by OMERO-plugins-push#520 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/520/)'
2025-08-30 00:45:50,699 [ scc.git] DEBUG [detached HEAD 428f545] merge master -Dorg -Ssuccess-only
2025-08-30 00:45:50,699 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-30 00:45:50,699 [ scc.repo] DEBUG ## PRs found:
2025-08-30 00:45:50,857 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:51,182 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2025-08-30 00:45:51,435 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:51,727 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2025-08-30 00:45:51,979 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:52,264 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2025-08-30 00:45:52,516 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:52,852 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-08-30 00:45:53,105 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:53,359 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-30 00:45:53,612 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:53,956 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-08-30 00:45:54,208 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:54,422 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2025-08-30 00:45:54,422 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2025-08-30 00:45:54,422 [ scc.repo] DEBUG ## Branches found:
2025-08-30 00:45:54,422 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-08-30 00:45:54,422 [ scc.git] DEBUG Get sha1 of %s
2025-08-30 00:45:54,422 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:45:54,425 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-30 00:45:54,428 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-30 00:45:54,428 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-30 00:45:54,431 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-30 00:45:54,434 [ scc.git] DEBUG Already up to date.
2025-08-30 00:45:54,434 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2025-08-30 00:45:54,720 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2025-08-30 00:45:54,720 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2025-08-30 00:45:54,724 [ scc.git] DEBUG ## Unique users: []
2025-08-30 00:45:54,724 [ scc.git] DEBUG Get sha1 of %s
2025-08-30 00:45:54,725 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:45:54,727 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-08-30 00:45:54,730 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:45:54,732 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-08-30 00:45:54,742 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2025-08-30 00:45:54,742 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2025-08-30 00:45:54,742 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2025-08-30 00:45:54,742 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2025-08-30 00:45:54,742 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2025-08-30 00:45:54,742 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2025-08-30 00:45:54,742 [ scc.git] DEBUG Auto-merging setup.py
2025-08-30 00:45:54,742 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2025-08-30 00:45:54,742 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-30 00:45:54,742 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-30 00:45:54,745 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2025-08-30 00:45:54,750 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2025-08-30 00:45:54,752 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:54,954 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-30 00:45:54,955 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-08-30 00:45:54,958 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2025-08-30 00:45:54,961 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#520](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/520/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/520/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_signup/urls.py
- omero_signup/views.py
- omero_signup/signup_settings.py
- setup.py
--conflicts
2025-08-30 00:45:54,963 [ scc.config] DEBUG Found github.token
2025-08-30 00:45:54,963 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2025-08-30 00:45:54,963 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-30 00:45:55,003 [ scc.git] DEBUG Get sha1 of %s
2025-08-30 00:45:55,003 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:45:55,005 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-30 00:45:55,045 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-30 00:45:55,049 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7f59a1ead0> has no local changes
2025-08-30 00:45:55,049 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#520 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/520/)'
2025-08-30 00:45:55,056 [ scc.git] DEBUG [detached HEAD 974604b] merge master -Dorg -Ssuccess-only
2025-08-30 00:45:55,056 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-30 00:45:55,056 [ scc.repo] DEBUG ## PRs found:
2025-08-30 00:45:55,207 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:55,573 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2025-08-30 00:45:55,826 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:56,105 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/76 HTTP/1.1" 200 None
2025-08-30 00:45:56,358 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:56,703 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-08-30 00:45:56,955 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:57,222 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-30 00:45:57,475 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:57,781 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-30 00:45:58,034 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:58,322 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-08-30 00:45:58,574 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:58,774 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6?per_page=1 HTTP/1.1" 200 2
2025-08-30 00:45:58,774 [ scc.repo] DEBUG - PR 76 will-moore 'Run cli deps'
2025-08-30 00:45:59,026 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:59,319 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2025-08-30 00:45:59,571 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:45:59,841 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2025-08-30 00:46:00,093 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:00,387 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None
2025-08-30 00:46:00,639 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:00,908 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-30 00:46:01,160 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:01,427 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-30 00:46:01,680 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:01,964 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73 HTTP/1.1" 200 None
2025-08-30 00:46:02,217 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:02,492 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73/comments HTTP/1.1" 200 None
2025-08-30 00:46:02,744 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:02,980 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12 HTTP/1.1" 200 None
2025-08-30 00:46:03,232 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:03,499 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12/comments HTTP/1.1" 200 None
2025-08-30 00:46:03,751 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:04,073 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-08-30 00:46:04,325 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:04,570 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-30 00:46:04,822 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:05,057 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-08-30 00:46:05,309 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:05,514 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/425319051224e8481afc40083fd9b5db4bc99928?per_page=1 HTTP/1.1" 200 2
2025-08-30 00:46:05,514 [ scc.repo] DEBUG - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-08-30 00:46:05,514 [ scc.repo] DEBUG ## Branches found:
2025-08-30 00:46:05,514 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-08-30 00:46:05,515 [ scc.git] DEBUG Get sha1 of %s
2025-08-30 00:46:05,515 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:46:05,517 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-30 00:46:05,520 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-30 00:46:05,520 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-30 00:46:05,523 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-30 00:46:05,526 [ scc.git] DEBUG Already up to date.
2025-08-30 00:46:05,526 [ scc.git] DEBUG Calling 'git fetch origin pull/12/head'
2025-08-30 00:46:05,817 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-08-30 00:46:05,817 [ scc.git] DEBUG * branch refs/pull/12/head -> FETCH_HEAD
2025-08-30 00:46:05,822 [ scc.git] DEBUG Calling 'git fetch origin pull/76/head'
2025-08-30 00:46:06,101 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-08-30 00:46:06,102 [ scc.git] DEBUG * branch refs/pull/76/head -> FETCH_HEAD
2025-08-30 00:46:06,106 [ scc.git] DEBUG ## Unique users: []
2025-08-30 00:46:06,106 [ scc.git] DEBUG Get sha1 of %s
2025-08-30 00:46:06,106 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:46:06,108 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...425319051224e8481afc40083fd9b5db4bc99928'
2025-08-30 00:46:06,112 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:46:06,114 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 12 (IDR: use downloaded ansible templates & variables to configure infra) 425319051224e8481afc40083fd9b5db4bc99928'
2025-08-30 00:46:06,127 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-30 00:46:06,131 [ scc.git] DEBUG idr-compose.yml | 66 ++++++++++++++
2025-08-30 00:46:06,131 [ scc.git] DEBUG idr-haproxy.yml | 58 +++++++++++++
2025-08-30 00:46:06,132 [ scc.git] DEBUG idr/40-ansible.sh | 7 ++
2025-08-30 00:46:06,132 [ scc.git] DEBUG idr/70-reset-password.sh | 1 +
2025-08-30 00:46:06,132 [ scc.git] DEBUG idr/nginx/conf.d/default.conf | 1 +
2025-08-30 00:46:06,132 [ scc.git] DEBUG idr/nginx/conf.d/example_ssl.conf | 1 +
2025-08-30 00:46:06,132 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cache.conf | 53 +++++++++++
2025-08-30 00:46:06,134 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cachebuster.conf | 114 ++++++++++++++++++++++++
2025-08-30 00:46:06,134 [ scc.git] DEBUG idr/nginx/conf.d/proxy-default.conf | 135 +++++++++++++++++++++++++++++
2025-08-30 00:46:06,134 [ scc.git] DEBUG idr/nginx/conf.d/proxy-omeroreadwrite.conf | 115 ++++++++++++++++++++++++
2025-08-30 00:46:06,134 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:06,134 [ scc.git] DEBUG idr/nginx/conf.d/proxy-redirect.conf | 15 ++++
2025-08-30 00:46:06,135 [ scc.git] DEBUG idr/nginx/conf.d/proxy-upstream.conf | 13 +++
2025-08-30 00:46:06,135 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v0.conf | 26 ++++++
2025-08-30 00:46:06,135 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v1.conf | 30 +++++++
2025-08-30 00:46:06,135 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v2.conf | 30 +++++++
2025-08-30 00:46:06,135 [ scc.git] DEBUG idr/nginx/conf.d/proxy-websockets.conf | 6 ++
2025-08-30 00:46:06,135 [ scc.git] DEBUG idr/nginx/nginx.conf | 53 +++++++++++
2025-08-30 00:46:06,135 [ scc.git] DEBUG idr/omero/Dockerfile | 3 +
2025-08-30 00:46:06,135 [ scc.git] DEBUG idr/omero/playbook.yml | 41 +++++++++
2025-08-30 00:46:06,135 [ scc.git] DEBUG idr/redirect/Dockerfile | 6 ++
2025-08-30 00:46:06,135 [ scc.git] DEBUG idr/web/Dockerfile | 5 ++
2025-08-30 00:46:06,135 [ scc.git] DEBUG idr/web/playbook.yml | 45 ++++++++++
2025-08-30 00:46:06,135 [ scc.git] DEBUG 22 files changed, 824 insertions(+)
2025-08-30 00:46:06,135 [ scc.git] DEBUG create mode 100644 idr-compose.yml
2025-08-30 00:46:06,135 [ scc.git] DEBUG create mode 100644 idr-haproxy.yml
2025-08-30 00:46:06,135 [ scc.git] DEBUG create mode 100755 idr/40-ansible.sh
2025-08-30 00:46:06,135 [ scc.git] DEBUG create mode 100755 idr/70-reset-password.sh
2025-08-30 00:46:06,135 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/default.conf
2025-08-30 00:46:06,135 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/example_ssl.conf
2025-08-30 00:46:06,135 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cache.conf
2025-08-30 00:46:06,135 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cachebuster.conf
2025-08-30 00:46:06,135 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-default.conf
2025-08-30 00:46:06,135 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-omeroreadwrite.conf
2025-08-30 00:46:06,135 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-redirect.conf
2025-08-30 00:46:06,135 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-upstream.conf
2025-08-30 00:46:06,135 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v0.conf
2025-08-30 00:46:06,135 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v1.conf
2025-08-30 00:46:06,135 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v2.conf
2025-08-30 00:46:06,135 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-websockets.conf
2025-08-30 00:46:06,136 [ scc.git] DEBUG create mode 100644 idr/nginx/nginx.conf
2025-08-30 00:46:06,136 [ scc.git] DEBUG create mode 100644 idr/omero/Dockerfile
2025-08-30 00:46:06,136 [ scc.git] DEBUG create mode 100644 idr/omero/playbook.yml
2025-08-30 00:46:06,136 [ scc.git] DEBUG create mode 100644 idr/redirect/Dockerfile
2025-08-30 00:46:06,136 [ scc.git] DEBUG create mode 100644 idr/web/Dockerfile
2025-08-30 00:46:06,136 [ scc.git] DEBUG create mode 100644 idr/web/playbook.yml
2025-08-30 00:46:06,370 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-30 00:46:06,370 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-08-30 00:46:06,375 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:46:06,378 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 76 (Run cli deps) bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-08-30 00:46:06,389 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-30 00:46:06,392 [ scc.git] DEBUG docker | 1 +
2025-08-30 00:46:06,392 [ scc.git] DEBUG 1 file changed, 1 insertion(+)
2025-08-30 00:46:06,622 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:06,829 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-30 00:46:06,830 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-30 00:46:06,871 [ scc.git] DEBUG Get sha1 of %s
2025-08-30 00:46:06,871 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:46:06,873 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-30 00:46:06,913 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-30 00:46:06,917 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7f5994a9d0> has no local changes
2025-08-30 00:46:06,917 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
- PR 76 will-moore 'Run cli deps'
Generated by OMERO-plugins-push#520 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/520/)'
2025-08-30 00:46:06,925 [ scc.git] DEBUG [detached HEAD 6c84e8d] merge master -Dorg -Ssuccess-only
2025-08-30 00:46:06,925 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-30 00:46:06,925 [ scc.repo] DEBUG ## PRs found:
2025-08-30 00:46:07,082 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:07,283 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 2
2025-08-30 00:46:07,284 [ scc.repo] DEBUG ## Branches found:
2025-08-30 00:46:07,284 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-08-30 00:46:07,284 [ scc.git] DEBUG Get sha1 of %s
2025-08-30 00:46:07,284 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:46:07,287 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-30 00:46:07,289 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-30 00:46:07,289 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-30 00:46:07,292 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-30 00:46:07,295 [ scc.git] DEBUG Already up to date.
2025-08-30 00:46:07,295 [ scc.git] DEBUG ## Unique users: []
2025-08-30 00:46:07,295 [ scc.git] DEBUG Get sha1 of %s
2025-08-30 00:46:07,295 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:46:07,297 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-30 00:46:07,336 [ scc.git] DEBUG Get sha1 of %s
2025-08-30 00:46:07,336 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:46:07,338 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-30 00:46:07,378 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-30 00:46:07,381 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7f59a31590> has no local changes
2025-08-30 00:46:07,381 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Generated by OMERO-plugins-push#520 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/520/)'
2025-08-30 00:46:07,387 [ scc.git] DEBUG [detached HEAD 0b4569e] merge master -Dorg -Ssuccess-only
2025-08-30 00:46:07,388 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-30 00:46:07,388 [ scc.repo] DEBUG ## PRs found:
2025-08-30 00:46:07,536 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:07,749 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 2
2025-08-30 00:46:07,749 [ scc.repo] DEBUG ## Branches found:
2025-08-30 00:46:07,749 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-08-30 00:46:07,749 [ scc.git] DEBUG Get sha1 of %s
2025-08-30 00:46:07,749 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:46:07,752 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-30 00:46:07,754 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-30 00:46:07,754 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-30 00:46:07,757 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-30 00:46:07,766 [ scc.git] DEBUG Updating deab817..160d894
2025-08-30 00:46:08,001 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:08,528 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2025-08-30 00:46:08,529 [ scc.git] DEBUG ## Unique users: []
2025-08-30 00:46:08,529 [ scc.git] DEBUG Get sha1 of %s
2025-08-30 00:46:08,529 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:46:08,532 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-30 00:46:08,572 [ scc.git] DEBUG Get sha1 of %s
2025-08-30 00:46:08,572 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:46:08,574 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-30 00:46:08,613 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-30 00:46:08,617 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7f5c06bb10> has no local changes
2025-08-30 00:46:08,617 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Generated by OMERO-plugins-push#520 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/520/)'
2025-08-30 00:46:08,623 [ scc.git] DEBUG [detached HEAD a79c467] merge master -Dorg -Ssuccess-only
2025-08-30 00:46:08,623 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-30 00:46:08,623 [ scc.git] INFO Overriding base-branch from master to main
2025-08-30 00:46:08,623 [ scc.repo] DEBUG ## PRs found:
2025-08-30 00:46:08,781 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:09,109 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2025-08-30 00:46:09,361 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:09,623 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None
2025-08-30 00:46:09,875 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:10,175 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/cf419dd60e4884ee15050271c97a6268e6e998b8 HTTP/1.1" 200 None
2025-08-30 00:46:10,428 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:10,692 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/cf419dd60e4884ee15050271c97a6268e6e998b8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-30 00:46:10,944 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:11,200 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/cf419dd60e4884ee15050271c97a6268e6e998b8/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-30 00:46:11,452 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:11,718 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/cf419dd60e4884ee15050271c97a6268e6e998b8 HTTP/1.1" 200 None
2025-08-30 00:46:11,970 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:12,211 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/cf419dd60e4884ee15050271c97a6268e6e998b8?per_page=1 HTTP/1.1" 200 2
2025-08-30 00:46:12,212 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import'
2025-08-30 00:46:12,464 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:12,760 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/20 HTTP/1.1" 200 None
2025-08-30 00:46:13,013 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:13,289 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/20/comments HTTP/1.1" 200 None
2025-08-30 00:46:13,542 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:13,858 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/76b47bafa934219c6487579e3df167219ea56fec HTTP/1.1" 200 None
2025-08-30 00:46:14,110 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:14,378 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/76b47bafa934219c6487579e3df167219ea56fec/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-30 00:46:14,630 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:14,909 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/76b47bafa934219c6487579e3df167219ea56fec/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-30 00:46:15,161 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:15,441 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/76b47bafa934219c6487579e3df167219ea56fec HTTP/1.1" 200 None
2025-08-30 00:46:15,693 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:15,907 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/76b47bafa934219c6487579e3df167219ea56fec?per_page=1 HTTP/1.1" 200 2
2025-08-30 00:46:15,908 [ scc.repo] DEBUG - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2025-08-30 00:46:16,160 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:16,445 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/18 HTTP/1.1" 200 None
2025-08-30 00:46:16,697 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:16,937 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/18/comments HTTP/1.1" 200 None
2025-08-30 00:46:17,189 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:17,490 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec HTTP/1.1" 200 None
2025-08-30 00:46:17,743 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:18,019 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-30 00:46:18,271 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:18,533 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-30 00:46:18,786 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:19,069 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2025-08-30 00:46:19,321 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:19,590 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2025-08-30 00:46:19,842 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:20,099 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2025-08-30 00:46:20,352 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:20,681 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-08-30 00:46:20,933 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:21,195 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-30 00:46:21,447 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:21,822 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-08-30 00:46:22,074 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:22,280 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2025-08-30 00:46:22,281 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-08-30 00:46:22,281 [ scc.repo] DEBUG ## Branches found:
2025-08-30 00:46:22,281 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-08-30 00:46:22,281 [ scc.git] DEBUG Get sha1 of %s
2025-08-30 00:46:22,281 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:46:22,284 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2025-08-30 00:46:22,286 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-30 00:46:22,286 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2025-08-30 00:46:22,289 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2025-08-30 00:46:22,292 [ scc.git] DEBUG Already up to date.
2025-08-30 00:46:22,293 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2025-08-30 00:46:22,605 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-08-30 00:46:22,605 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2025-08-30 00:46:22,609 [ scc.git] DEBUG Calling 'git fetch origin pull/20/head'
2025-08-30 00:46:22,897 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-08-30 00:46:22,897 [ scc.git] DEBUG * branch refs/pull/20/head -> FETCH_HEAD
2025-08-30 00:46:22,901 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head'
2025-08-30 00:46:23,334 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-08-30 00:46:23,334 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD
2025-08-30 00:46:23,337 [ scc.git] DEBUG ## Unique users: []
2025-08-30 00:46:23,337 [ scc.git] DEBUG Get sha1 of %s
2025-08-30 00:46:23,337 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:46:23,339 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-08-30 00:46:23,342 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:46:23,344 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-08-30 00:46:23,352 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2025-08-30 00:46:23,352 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2025-08-30 00:46:23,352 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-30 00:46:23,353 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-30 00:46:23,355 [ scc.git] DEBUG Calling 'git reset --hard 8f3c31388de8a7c44f18a6f0e20ea41d35fae041'
2025-08-30 00:46:23,360 [ scc.git] DEBUG HEAD is now at 8f3c313 Merge pull request #17 from jburel/build
2025-08-30 00:46:23,363 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:23,547 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-30 00:46:23,548 [ scc.git] DEBUG Calling 'git merge-base 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-08-30 00:46:23,551 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..8f3c31388de8a7c44f18a6f0e20ea41d35fae041'
2025-08-30 00:46:23,554 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#520](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/520/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/520/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2025-08-30 00:46:23,556 [ scc.config] DEBUG Found github.token
2025-08-30 00:46:23,556 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2025-08-30 00:46:23,556 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...76b47bafa934219c6487579e3df167219ea56fec'
2025-08-30 00:46:23,559 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:46:23,561 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 20 (Use zarr_format=2 for .zarray and chunk endpoints) 76b47bafa934219c6487579e3df167219ea56fec'
2025-08-30 00:46:23,569 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-30 00:46:23,572 [ scc.git] DEBUG omero_web_zarr/views.py | 3 ++-
2025-08-30 00:46:23,572 [ scc.git] DEBUG 1 file changed, 2 insertions(+), 1 deletion(-)
2025-08-30 00:46:23,799 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:24,007 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-30 00:46:24,008 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...cf419dd60e4884ee15050271c97a6268e6e998b8'
2025-08-30 00:46:24,011 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:46:24,013 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) cf419dd60e4884ee15050271c97a6268e6e998b8'
2025-08-30 00:46:24,024 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2025-08-30 00:46:24,025 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-30 00:46:24,029 [ scc.git] DEBUG README.rst | 3 +
2025-08-30 00:46:24,029 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++
2025-08-30 00:46:24,029 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 +
2025-08-30 00:46:24,029 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++-
2025-08-30 00:46:24,029 [ scc.git] DEBUG setup.py | 5 +-
2025-08-30 00:46:24,029 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-)
2025-08-30 00:46:24,029 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html
2025-08-30 00:46:24,259 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:24,462 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-30 00:46:24,462 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-30 00:46:24,503 [ scc.git] DEBUG Get sha1 of %s
2025-08-30 00:46:24,503 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:46:24,505 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-30 00:46:24,544 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-30 00:46:24,548 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7f5805ff10> has no local changes
2025-08-30 00:46:24,548 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 18 will-moore 'Build' (status: failure)
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Already up to date.
Merged PRs:
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#520 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/520/)'
2025-08-30 00:46:24,555 [ scc.git] DEBUG [detached HEAD 037d933] merge master -Dorg -Ssuccess-only
2025-08-30 00:46:24,555 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-30 00:46:24,555 [ scc.repo] DEBUG ## PRs found:
2025-08-30 00:46:24,715 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:24,919 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 2
2025-08-30 00:46:24,920 [ scc.repo] DEBUG ## Branches found:
2025-08-30 00:46:24,920 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-08-30 00:46:24,920 [ scc.git] DEBUG Get sha1 of %s
2025-08-30 00:46:24,920 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:46:24,922 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-30 00:46:24,925 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-30 00:46:24,925 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-30 00:46:24,928 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-30 00:46:24,931 [ scc.git] DEBUG Already up to date.
2025-08-30 00:46:24,931 [ scc.git] DEBUG ## Unique users: []
2025-08-30 00:46:24,931 [ scc.git] DEBUG Get sha1 of %s
2025-08-30 00:46:24,931 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:46:24,933 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-30 00:46:24,974 [ scc.git] DEBUG Get sha1 of %s
2025-08-30 00:46:24,974 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:46:24,976 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-30 00:46:25,014 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-30 00:46:25,017 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7f58088b10> has no local changes
2025-08-30 00:46:25,017 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Generated by OMERO-plugins-push#520 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/520/)'
2025-08-30 00:46:25,024 [ scc.git] DEBUG [detached HEAD 63dbb19] merge master -Dorg -Ssuccess-only
2025-08-30 00:46:25,024 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-30 00:46:25,025 [ scc.repo] DEBUG ## PRs found:
2025-08-30 00:46:25,172 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:25,377 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 2
2025-08-30 00:46:25,377 [ scc.repo] DEBUG ## Branches found:
2025-08-30 00:46:25,377 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-08-30 00:46:25,377 [ scc.git] DEBUG Get sha1 of %s
2025-08-30 00:46:25,378 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:46:25,380 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-30 00:46:25,382 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-30 00:46:25,382 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-30 00:46:25,385 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-30 00:46:25,388 [ scc.git] DEBUG Already up to date.
2025-08-30 00:46:25,388 [ scc.git] DEBUG ## Unique users: []
2025-08-30 00:46:25,388 [ scc.git] DEBUG Get sha1 of %s
2025-08-30 00:46:25,388 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:46:25,390 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-30 00:46:25,429 [ scc.git] DEBUG Get sha1 of %s
2025-08-30 00:46:25,429 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:46:25,431 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-30 00:46:25,471 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-30 00:46:25,474 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7f580c6090> has no local changes
2025-08-30 00:46:25,474 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Generated by OMERO-plugins-push#520 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/520/)'
2025-08-30 00:46:25,481 [ scc.git] DEBUG [detached HEAD d21ee59] merge master -Dorg -Ssuccess-only
2025-08-30 00:46:25,481 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-30 00:46:25,481 [ scc.repo] DEBUG ## PRs found:
2025-08-30 00:46:25,630 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:25,934 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 None
2025-08-30 00:46:26,186 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:26,441 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100 HTTP/1.1" 200 None
2025-08-30 00:46:26,693 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:26,938 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100/comments HTTP/1.1" 200 None
2025-08-30 00:46:27,191 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:27,525 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-08-30 00:46:27,777 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:28,034 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-30 00:46:28,286 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:28,580 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-08-30 00:46:28,833 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:29,060 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/statuses/b4abacf0cb9b7aee150761d320bdbb80762cd6e7?per_page=1 HTTP/1.1" 200 2
2025-08-30 00:46:29,060 [ scc.repo] DEBUG - PR 100 dominikl 'Run tests properly'
2025-08-30 00:46:29,061 [ scc.repo] DEBUG ## Branches found:
2025-08-30 00:46:29,061 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-08-30 00:46:29,061 [ scc.git] DEBUG Get sha1 of %s
2025-08-30 00:46:29,061 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:46:29,064 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-30 00:46:29,066 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-30 00:46:29,066 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-30 00:46:29,069 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-30 00:46:29,072 [ scc.git] DEBUG Already up to date.
2025-08-30 00:46:29,072 [ scc.git] DEBUG Calling 'git fetch origin pull/100/head'
2025-08-30 00:46:29,354 [ scc.git] DEBUG From https://github.com/ome/rOMERO-gateway
2025-08-30 00:46:29,354 [ scc.git] DEBUG * branch refs/pull/100/head -> FETCH_HEAD
2025-08-30 00:46:29,358 [ scc.git] DEBUG ## Unique users: []
2025-08-30 00:46:29,358 [ scc.git] DEBUG Get sha1 of %s
2025-08-30 00:46:29,358 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:46:29,360 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-08-30 00:46:29,363 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:46:29,366 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 100 (Run tests properly) b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-08-30 00:46:29,375 [ scc.git] DEBUG Auto-merging Dockerfile
2025-08-30 00:46:29,375 [ scc.git] DEBUG CONFLICT (content): Merge conflict in Dockerfile
2025-08-30 00:46:29,376 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-30 00:46:29,376 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-30 00:46:29,379 [ scc.git] DEBUG Calling 'git reset --hard 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-08-30 00:46:29,384 [ scc.git] DEBUG HEAD is now at 7b5d64d Merge pull request #106 from dominikl/add_examples_2
2025-08-30 00:46:29,386 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:29,566 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-30 00:46:29,566 [ scc.git] DEBUG Calling 'git merge-base 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-08-30 00:46:29,569 [ scc.git] DEBUG Calling 'git diff --name-only 8b424d2d21f70d07729c4da38a9241b9a9f483be..7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-08-30 00:46:29,572 [ scc.git] INFO - PR 100 dominikl 'Run tests properly'
Conflicting PR. Removed from build [OMERO-plugins-push#520](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/520/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/520/consoleText) for more details.
Possible conflicts:
- Upstream changes
- Dockerfile
--conflicts
2025-08-30 00:46:29,574 [ scc.config] DEBUG Found github.token
2025-08-30 00:46:29,574 [ scc.git] DEBUG Not adding comment to issue #100, already --conflicts.
2025-08-30 00:46:29,574 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-30 00:46:29,614 [ scc.git] DEBUG Get sha1 of %s
2025-08-30 00:46:29,615 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:46:29,617 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-30 00:46:29,656 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-30 00:46:29,660 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7f580cb190> has no local changes
2025-08-30 00:46:29,660 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Generated by OMERO-plugins-push#520 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/520/)'
2025-08-30 00:46:29,667 [ scc.git] DEBUG [detached HEAD ad8b255] merge master -Dorg -Ssuccess-only
2025-08-30 00:46:29,667 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-30 00:46:29,668 [ scc.git] INFO Overriding base-branch from master to develop
2025-08-30 00:46:29,668 [ scc.repo] DEBUG ## PRs found:
2025-08-30 00:46:29,819 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:30,146 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2025-08-30 00:46:30,399 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:30,692 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223 HTTP/1.1" 200 None
2025-08-30 00:46:30,944 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:31,186 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223/comments HTTP/1.1" 200 None
2025-08-30 00:46:31,438 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:31,659 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-08-30 00:46:31,911 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:32,179 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-30 00:46:32,431 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:32,712 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-30 00:46:32,964 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:33,224 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-08-30 00:46:33,477 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:33,674 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/d8b2bbd6f5066de883a41ba5338662d60472b0d8?per_page=1 HTTP/1.1" 200 2
2025-08-30 00:46:33,675 [ scc.repo] DEBUG - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-08-30 00:46:33,927 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:34,175 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202 HTTP/1.1" 200 None
2025-08-30 00:46:34,427 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:34,720 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202/comments HTTP/1.1" 200 None
2025-08-30 00:46:34,973 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:35,276 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-08-30 00:46:35,529 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:35,754 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-30 00:46:36,006 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:36,297 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-08-30 00:46:36,549 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:36,770 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/1fd6030669613cdb8879cfe6395db8c820fdcf19?per_page=1 HTTP/1.1" 200 2
2025-08-30 00:46:36,771 [ scc.repo] DEBUG - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-08-30 00:46:37,023 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:37,293 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None
2025-08-30 00:46:37,545 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:37,792 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None
2025-08-30 00:46:38,044 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:38,333 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103 HTTP/1.1" 200 None
2025-08-30 00:46:38,585 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:38,868 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103/comments HTTP/1.1" 200 None
2025-08-30 00:46:38,869 [ scc.repo] DEBUG ## Branches found:
2025-08-30 00:46:38,870 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-08-30 00:46:38,870 [ scc.git] DEBUG Get sha1 of %s
2025-08-30 00:46:38,870 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:46:38,873 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2025-08-30 00:46:38,875 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-30 00:46:38,875 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2025-08-30 00:46:38,878 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2025-08-30 00:46:38,889 [ scc.git] DEBUG Updating 4b4c755..573db34
2025-08-30 00:46:39,121 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:39,528 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2025-08-30 00:46:39,780 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:40,260 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2025-08-30 00:46:40,261 [ scc.git] DEBUG Calling 'git fetch origin pull/202/head'
2025-08-30 00:46:40,566 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-08-30 00:46:40,566 [ scc.git] DEBUG * branch refs/pull/202/head -> FETCH_HEAD
2025-08-30 00:46:40,570 [ scc.git] DEBUG Calling 'git fetch origin pull/223/head'
2025-08-30 00:46:40,871 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-08-30 00:46:40,871 [ scc.git] DEBUG * branch refs/pull/223/head -> FETCH_HEAD
2025-08-30 00:46:40,875 [ scc.git] DEBUG ## Unique users: []
2025-08-30 00:46:40,876 [ scc.git] DEBUG Get sha1 of %s
2025-08-30 00:46:40,876 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:46:40,878 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-08-30 00:46:40,884 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:46:40,887 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 202 (Add Plate support to KeyVal_to_csv.py) 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-08-30 00:46:40,898 [ scc.git] DEBUG CONFLICT (modify/delete): omero/annotation_scripts/KeyVal_to_csv.py deleted in HEAD and modified in 1fd6030669613cdb8879cfe6395db8c820fdcf19. Version 1fd6030669613cdb8879cfe6395db8c820fdcf19 of omero/annotation_scripts/KeyVal_to_csv.py left in tree.
2025-08-30 00:46:40,898 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-30 00:46:40,899 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-30 00:46:40,901 [ scc.git] DEBUG Calling 'git reset --hard 573db340d5d1429fa17c7e486206948412a7c150'
2025-08-30 00:46:40,905 [ scc.git] DEBUG HEAD is now at 573db34 Bump version: 5.9.1 → 5.9.2.dev0
2025-08-30 00:46:40,908 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:41,090 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-30 00:46:41,090 [ scc.git] DEBUG Calling 'git merge-base 573db340d5d1429fa17c7e486206948412a7c150 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-08-30 00:46:41,096 [ scc.git] DEBUG Calling 'git diff --name-only a90f59802f6752ad74badec5c0c1d6b0c9c43b15..573db340d5d1429fa17c7e486206948412a7c150'
2025-08-30 00:46:41,100 [ scc.git] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Conflicting PR. Removed from build [OMERO-plugins-push#520](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/520/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/520/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero/annotation_scripts/KeyVal_to_csv.py
--conflicts
2025-08-30 00:46:41,102 [ scc.config] DEBUG Found github.token
2025-08-30 00:46:41,102 [ scc.git] DEBUG Not adding comment to issue #202, already --conflicts.
2025-08-30 00:46:41,102 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-08-30 00:46:41,107 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:46:41,109 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 223 (don't attempt ROI stats on big images) d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-08-30 00:46:41,119 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-30 00:46:41,122 [ scc.git] DEBUG omero/export_scripts/Batch_ROI_Export.py | 9 ++++++++-
2025-08-30 00:46:41,123 [ scc.git] DEBUG 1 file changed, 8 insertions(+), 1 deletion(-)
2025-08-30 00:46:41,342 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:41,544 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-30 00:46:41,545 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-30 00:46:41,587 [ scc.git] DEBUG Get sha1 of %s
2025-08-30 00:46:41,587 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-30 00:46:41,590 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-30 00:46:41,631 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-30 00:46:41,635 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7f58043150> has no local changes
2025-08-30 00:46:41,635 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..573db34
Previously merged:
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#520 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/520/)'
2025-08-30 00:46:41,642 [ scc.git] DEBUG [detached HEAD ba27b9b] merge master -Dorg -Ssuccess-only
2025-08-30 00:46:41,643 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-30 00:46:41,643 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-30 00:46:41,725 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2025-08-30 00:46:41,798 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:42,011 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-30 00:46:42,016 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2025-08-30 00:46:42,018 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2025-08-30 00:46:42,263 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:42,464 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-30 00:46:42,469 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2025-08-30 00:46:42,471 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2025-08-30 00:46:42,716 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:42,973 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-30 00:46:42,977 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2025-08-30 00:46:42,979 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2025-08-30 00:46:43,225 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:43,419 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-30 00:46:43,427 [ scc.config] DEBUG Found submodule.omero-figure.url
2025-08-30 00:46:43,672 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:43,908 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-30 00:46:43,914 [ scc.config] DEBUG Found submodule.omero-figure.branch
2025-08-30 00:46:43,916 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2025-08-30 00:46:44,161 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:44,358 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-30 00:46:44,363 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2025-08-30 00:46:44,365 [ scc.config] DEBUG Found submodule.omero-gallery.url
2025-08-30 00:46:44,610 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:44,818 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-30 00:46:44,823 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2025-08-30 00:46:44,825 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2025-08-30 00:46:45,070 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:45,260 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-30 00:46:45,265 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2025-08-30 00:46:45,267 [ scc.config] DEBUG Found submodule.omero-mapr.url
2025-08-30 00:46:45,513 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:45,703 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-30 00:46:45,708 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2025-08-30 00:46:45,710 [ scc.config] DEBUG Found submodule.omero-metadata.url
2025-08-30 00:46:45,956 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:46,157 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-30 00:46:46,162 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2025-08-30 00:46:46,164 [ scc.config] DEBUG Found submodule.omero-parade.url
2025-08-30 00:46:46,410 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:46,616 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-30 00:46:46,622 [ scc.config] DEBUG Found submodule.omero-parade.branch
2025-08-30 00:46:46,624 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2025-08-30 00:46:46,869 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:47,078 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-30 00:46:47,083 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2025-08-30 00:46:47,085 [ scc.config] DEBUG Found submodule.omero-rois.url
2025-08-30 00:46:47,331 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:47,525 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-30 00:46:47,532 [ scc.config] DEBUG Found submodule.omero-signup.url
2025-08-30 00:46:47,777 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:47,967 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-30 00:46:47,974 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2025-08-30 00:46:48,220 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:48,436 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-30 00:46:48,441 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2025-08-30 00:46:48,443 [ scc.config] DEBUG Found submodule.omero-upload.url
2025-08-30 00:46:48,689 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:48,900 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-30 00:46:48,907 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2025-08-30 00:46:49,153 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:49,383 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-30 00:46:49,390 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2025-08-30 00:46:49,636 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:49,824 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-30 00:46:49,829 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2025-08-30 00:46:49,831 [ scc.config] DEBUG Found submodule.omero-weberror.url
2025-08-30 00:46:50,076 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:50,284 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-30 00:46:50,289 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2025-08-30 00:46:50,291 [ scc.config] DEBUG Found submodule.omero-webtest.url
2025-08-30 00:46:50,536 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:50,747 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-30 00:46:50,752 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2025-08-30 00:46:50,754 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2025-08-30 00:46:51,000 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:51,205 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-30 00:46:51,210 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2025-08-30 00:46:51,212 [ scc.config] DEBUG Found submodule.scripts.url
2025-08-30 00:46:51,457 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-30 00:46:51,689 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-30 00:46:51,694 [ scc.config] DEBUG Found submodule.scripts.branch
2025-08-30 00:46:51,694 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-30 00:46:51,787 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7f59939490> has local changes
2025-08-30 00:46:51,787 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Repository: ome/omero-cli-render
Excluded PRs:
- PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Already up to date.
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
- PR 69 dominikl 'Fix help text for impo/export commands'
- PR 71 dominikl 'Escape slash character in image names'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 174 will-moore 'Skip wells' (stage: draft)
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (exclude comment)
- PR 170 will-moore 'Use ome zarr models py' (stage: draft)
- PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
- PR 167 dominikl 'Add extinfo command' (stage: draft)
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..f7eea7c
Previously merged:
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
- PR 180 will-moore 'Register command'
Repository: ome/omero-figure
Excluded PRs:
- PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
- PR 619 will-moore 'OME-Zarr support' (stage: draft)
- PR 543 will-moore 'Plate well labels' (exclude comment)
Updating 9cc36cde..d2c6f5bc
Previously merged:
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 600 Rdornier 'Label on rois'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 612 will-moore 'Script version'
- PR 639 dependabot[bot] 'Bump vite from 6.2.6 to 6.2.7'
Conflicting PRs (not included):
- PR 616 Rdornier 'Fix labels around border'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 637 Rdornier 'Fix scalebar position'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..bb94cf8
Previously merged:
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
Conflicting PRs (not included):
- PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
Repository: ome/omero-signup
Already up to date.
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
- PR 76 will-moore 'Run cli deps'
Repository: ome/omero-upload
Already up to date.
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 18 will-moore 'Build' (status: failure)
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Already up to date.
Merged PRs:
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Repository: openmicroscopy/omero-webtest
Already up to date.
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..573db34
Previously merged:
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#520 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/520/)'
2025-08-30 00:46:51,801 [ scc.git] DEBUG [detached HEAD 21efb57] merge master -Dorg -Ssuccess-only
2025-08-30 00:46:51,801 [ scc.merge] INFO Repository: ome/omero-plugins
2025-08-30 00:46:51,801 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-)
2025-08-30 00:46:51,801 [ scc.merge] INFO Already up to date.
2025-08-30 00:46:51,801 [ scc.merge] INFO
2025-08-30 00:46:51,801 [ scc.merge] INFO Merged PRs:
2025-08-30 00:46:51,801 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2025-08-30 00:46:51,801 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2025-08-30 00:46:51,801 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2025-08-30 00:46:51,801 [ scc.merge] INFO
2025-08-30 00:46:51,801 [ scc.merge] INFO Repository: ome/minimal-omero-client
2025-08-30 00:46:51,801 [ scc.merge] INFO Already up to date.
2025-08-30 00:46:51,801 [ scc.merge] INFO
2025-08-30 00:46:51,801 [ scc.merge] INFO
2025-08-30 00:46:51,802 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2025-08-30 00:46:51,802 [ scc.merge] INFO Excluded PRs:
2025-08-30 00:46:51,802 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2025-08-30 00:46:51,802 [ scc.merge] INFO Already up to date.
2025-08-30 00:46:51,802 [ scc.merge] INFO
2025-08-30 00:46:51,802 [ scc.merge] INFO
2025-08-30 00:46:51,802 [ scc.merge] INFO Repository: ome/omero-cli-render
2025-08-30 00:46:51,802 [ scc.merge] INFO Excluded PRs:
2025-08-30 00:46:51,802 [ scc.merge] INFO - PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
2025-08-30 00:46:51,802 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2025-08-30 00:46:51,802 [ scc.merge] INFO Already up to date.
2025-08-30 00:46:51,802 [ scc.merge] INFO
2025-08-30 00:46:51,802 [ scc.merge] INFO Merged PRs:
2025-08-30 00:46:51,802 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2025-08-30 00:46:51,802 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2025-08-30 00:46:51,802 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2025-08-30 00:46:51,802 [ scc.merge] INFO
2025-08-30 00:46:51,802 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2025-08-30 00:46:51,802 [ scc.merge] INFO Excluded PRs:
2025-08-30 00:46:51,802 [ scc.merge] INFO - PR 174 will-moore 'Skip wells' (stage: draft)
2025-08-30 00:46:51,802 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (exclude comment)
2025-08-30 00:46:51,802 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft)
2025-08-30 00:46:51,802 [ scc.merge] INFO - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
2025-08-30 00:46:51,802 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft)
2025-08-30 00:46:51,802 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2025-08-30 00:46:51,802 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-08-30 00:46:51,802 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2025-08-30 00:46:51,802 [ scc.merge] INFO Updating 11d3587..f7eea7c
2025-08-30 00:46:51,802 [ scc.merge] INFO Previously merged:
2025-08-30 00:46:51,802 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2025-08-30 00:46:51,802 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2025-08-30 00:46:51,802 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2025-08-30 00:46:51,802 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2025-08-30 00:46:51,802 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2025-08-30 00:46:51,802 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2025-08-30 00:46:51,802 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-30 00:46:51,802 [ scc.merge] INFO
2025-08-30 00:46:51,802 [ scc.merge] INFO Merged PRs:
2025-08-30 00:46:51,802 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2025-08-30 00:46:51,802 [ scc.merge] INFO - PR 180 will-moore 'Register command'
2025-08-30 00:46:51,802 [ scc.merge] INFO
2025-08-30 00:46:51,803 [ scc.merge] INFO Repository: ome/omero-figure
2025-08-30 00:46:51,803 [ scc.merge] INFO Excluded PRs:
2025-08-30 00:46:51,803 [ scc.merge] INFO - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
2025-08-30 00:46:51,803 [ scc.merge] INFO - PR 619 will-moore 'OME-Zarr support' (stage: draft)
2025-08-30 00:46:51,803 [ scc.merge] INFO - PR 543 will-moore 'Plate well labels' (exclude comment)
2025-08-30 00:46:51,803 [ scc.merge] INFO Updating 9cc36cde..d2c6f5bc
2025-08-30 00:46:51,803 [ scc.merge] INFO Previously merged:
2025-08-30 00:46:51,803 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2025-08-30 00:46:51,803 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2025-08-30 00:46:51,803 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2025-08-30 00:46:51,803 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2025-08-30 00:46:51,803 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-30 00:46:51,803 [ scc.merge] INFO
2025-08-30 00:46:51,803 [ scc.merge] INFO Merged PRs:
2025-08-30 00:46:51,803 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2025-08-30 00:46:51,803 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2025-08-30 00:46:51,803 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2025-08-30 00:46:51,803 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2025-08-30 00:46:51,803 [ scc.merge] INFO - PR 639 dependabot[bot] 'Bump vite from 6.2.6 to 6.2.7'
2025-08-30 00:46:51,803 [ scc.merge] INFO
2025-08-30 00:46:51,803 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-30 00:46:51,803 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2025-08-30 00:46:51,803 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2025-08-30 00:46:51,803 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2025-08-30 00:46:51,803 [ scc.merge] INFO
2025-08-30 00:46:51,803 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2025-08-30 00:46:51,803 [ scc.merge] INFO Already up to date.
2025-08-30 00:46:51,803 [ scc.merge] INFO
2025-08-30 00:46:51,803 [ scc.merge] INFO Merged PRs:
2025-08-30 00:46:51,803 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2025-08-30 00:46:51,803 [ scc.merge] INFO
2025-08-30 00:46:51,803 [ scc.merge] INFO Repository: ome/omero-gallery
2025-08-30 00:46:51,803 [ scc.merge] INFO Already up to date.
2025-08-30 00:46:51,803 [ scc.merge] INFO
2025-08-30 00:46:51,803 [ scc.merge] INFO Merged PRs:
2025-08-30 00:46:51,803 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2025-08-30 00:46:51,803 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2025-08-30 00:46:51,803 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2025-08-30 00:46:51,803 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2025-08-30 00:46:51,803 [ scc.merge] INFO
2025-08-30 00:46:51,803 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-30 00:46:51,804 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2025-08-30 00:46:51,804 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2025-08-30 00:46:51,804 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2025-08-30 00:46:51,804 [ scc.merge] INFO
2025-08-30 00:46:51,804 [ scc.merge] INFO Repository: ome/omero-iviewer
2025-08-30 00:46:51,804 [ scc.merge] INFO Excluded PRs:
2025-08-30 00:46:51,804 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
2025-08-30 00:46:51,804 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
2025-08-30 00:46:51,804 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2025-08-30 00:46:51,804 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2025-08-30 00:46:51,804 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure)
2025-08-30 00:46:51,804 [ scc.merge] INFO Updating 7a798ce..bb94cf8
2025-08-30 00:46:51,804 [ scc.merge] INFO Previously merged:
2025-08-30 00:46:51,804 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-30 00:46:51,804 [ scc.merge] INFO
2025-08-30 00:46:51,804 [ scc.merge] INFO Merged PRs:
2025-08-30 00:46:51,804 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix'
2025-08-30 00:46:51,804 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2025-08-30 00:46:51,804 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2025-08-30 00:46:51,804 [ scc.merge] INFO - PR 499 dependabot[bot] 'Bump nanoid and mocha'
2025-08-30 00:46:51,804 [ scc.merge] INFO
2025-08-30 00:46:51,804 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-30 00:46:51,804 [ scc.merge] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
2025-08-30 00:46:51,804 [ scc.merge] INFO
2025-08-30 00:46:51,804 [ scc.merge] INFO Repository: ome/omero-mapr
2025-08-30 00:46:51,804 [ scc.merge] INFO Excluded PRs:
2025-08-30 00:46:51,804 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2025-08-30 00:46:51,804 [ scc.merge] INFO Already up to date.
2025-08-30 00:46:51,804 [ scc.merge] INFO
2025-08-30 00:46:51,804 [ scc.merge] INFO Merged PRs:
2025-08-30 00:46:51,804 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient'
2025-08-30 00:46:51,804 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-30 00:46:51,804 [ scc.merge] INFO
2025-08-30 00:46:51,804 [ scc.merge] INFO Repository: ome/omero-metadata
2025-08-30 00:46:51,804 [ scc.merge] INFO Updating 3cd120c..55060a2
2025-08-30 00:46:51,804 [ scc.merge] INFO Previously merged:
2025-08-30 00:46:51,804 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-30 00:46:51,804 [ scc.merge] INFO
2025-08-30 00:46:51,804 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-30 00:46:51,804 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-08-30 00:46:51,804 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-08-30 00:46:51,804 [ scc.merge] INFO
2025-08-30 00:46:51,805 [ scc.merge] INFO Repository: ome/omero-parade
2025-08-30 00:46:51,805 [ scc.merge] INFO Excluded PRs:
2025-08-30 00:46:51,805 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2025-08-30 00:46:51,805 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2025-08-30 00:46:51,805 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2025-08-30 00:46:51,805 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2025-08-30 00:46:51,805 [ scc.merge] INFO Already up to date.
2025-08-30 00:46:51,805 [ scc.merge] INFO
2025-08-30 00:46:51,805 [ scc.merge] INFO Merged PRs:
2025-08-30 00:46:51,805 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-08-30 00:46:51,805 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-08-30 00:46:51,805 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-30 00:46:51,805 [ scc.merge] INFO
2025-08-30 00:46:51,805 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2025-08-30 00:46:51,805 [ scc.merge] INFO Already up to date.
2025-08-30 00:46:51,805 [ scc.merge] INFO
2025-08-30 00:46:51,805 [ scc.merge] INFO
2025-08-30 00:46:51,805 [ scc.merge] INFO Repository: ome/omero-rois
2025-08-30 00:46:51,805 [ scc.merge] INFO Excluded PRs:
2025-08-30 00:46:51,805 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-08-30 00:46:51,805 [ scc.merge] INFO Already up to date.
2025-08-30 00:46:51,805 [ scc.merge] INFO
2025-08-30 00:46:51,805 [ scc.merge] INFO Merged PRs:
2025-08-30 00:46:51,805 [ scc.merge] INFO - PR 33 jo-mueller 'Add roi to array functions'
2025-08-30 00:46:51,805 [ scc.merge] INFO
2025-08-30 00:46:51,805 [ scc.merge] INFO Repository: ome/omero-signup
2025-08-30 00:46:51,805 [ scc.merge] INFO Already up to date.
2025-08-30 00:46:51,805 [ scc.merge] INFO
2025-08-30 00:46:51,805 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-30 00:46:51,805 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2025-08-30 00:46:51,805 [ scc.merge] INFO
2025-08-30 00:46:51,805 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2025-08-30 00:46:51,805 [ scc.merge] INFO Excluded PRs:
2025-08-30 00:46:51,805 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2025-08-30 00:46:51,805 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
2025-08-30 00:46:51,805 [ scc.merge] INFO - PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
2025-08-30 00:46:51,805 [ scc.merge] INFO Already up to date.
2025-08-30 00:46:51,805 [ scc.merge] INFO
2025-08-30 00:46:51,805 [ scc.merge] INFO Merged PRs:
2025-08-30 00:46:51,805 [ scc.merge] INFO - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-08-30 00:46:51,805 [ scc.merge] INFO - PR 76 will-moore 'Run cli deps'
2025-08-30 00:46:51,805 [ scc.merge] INFO
2025-08-30 00:46:51,806 [ scc.merge] INFO Repository: ome/omero-upload
2025-08-30 00:46:51,806 [ scc.merge] INFO Already up to date.
2025-08-30 00:46:51,806 [ scc.merge] INFO
2025-08-30 00:46:51,806 [ scc.merge] INFO
2025-08-30 00:46:51,806 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2025-08-30 00:46:51,806 [ scc.merge] INFO Updating deab817..160d894
2025-08-30 00:46:51,806 [ scc.merge] INFO Previously merged:
2025-08-30 00:46:51,806 [ scc.merge] INFO - PR 20 jburel 'Build'
2025-08-30 00:46:51,806 [ scc.merge] INFO
2025-08-30 00:46:51,806 [ scc.merge] INFO
2025-08-30 00:46:51,806 [ scc.merge] INFO Repository: ome/omero-web-zarr
2025-08-30 00:46:51,806 [ scc.merge] INFO Excluded PRs:
2025-08-30 00:46:51,806 [ scc.merge] INFO - PR 18 will-moore 'Build' (status: failure)
2025-08-30 00:46:51,806 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2025-08-30 00:46:51,806 [ scc.merge] INFO Already up to date.
2025-08-30 00:46:51,806 [ scc.merge] INFO
2025-08-30 00:46:51,806 [ scc.merge] INFO Merged PRs:
2025-08-30 00:46:51,806 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2025-08-30 00:46:51,806 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import'
2025-08-30 00:46:51,806 [ scc.merge] INFO
2025-08-30 00:46:51,806 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-30 00:46:51,806 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-08-30 00:46:51,806 [ scc.merge] INFO
2025-08-30 00:46:51,806 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2025-08-30 00:46:51,806 [ scc.merge] INFO Already up to date.
2025-08-30 00:46:51,806 [ scc.merge] INFO
2025-08-30 00:46:51,806 [ scc.merge] INFO
2025-08-30 00:46:51,806 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2025-08-30 00:46:51,806 [ scc.merge] INFO Already up to date.
2025-08-30 00:46:51,806 [ scc.merge] INFO
2025-08-30 00:46:51,806 [ scc.merge] INFO
2025-08-30 00:46:51,806 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2025-08-30 00:46:51,806 [ scc.merge] INFO Already up to date.
2025-08-30 00:46:51,806 [ scc.merge] INFO
2025-08-30 00:46:51,806 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-30 00:46:51,806 [ scc.merge] INFO - PR 100 dominikl 'Run tests properly'
2025-08-30 00:46:51,806 [ scc.merge] INFO
2025-08-30 00:46:51,806 [ scc.merge] INFO Repository: ome/scripts
2025-08-30 00:46:51,806 [ scc.merge] INFO Excluded PRs:
2025-08-30 00:46:51,806 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
2025-08-30 00:46:51,806 [ scc.merge] INFO - PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
2025-08-30 00:46:51,806 [ scc.merge] INFO Updating 4b4c755..573db34
2025-08-30 00:46:51,807 [ scc.merge] INFO Previously merged:
2025-08-30 00:46:51,807 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2025-08-30 00:46:51,807 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2025-08-30 00:46:51,807 [ scc.merge] INFO
2025-08-30 00:46:51,807 [ scc.merge] INFO Merged PRs:
2025-08-30 00:46:51,807 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-08-30 00:46:51,807 [ scc.merge] INFO
2025-08-30 00:46:51,807 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-30 00:46:51,807 [ scc.merge] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-08-30 00:46:51,807 [ scc.merge] INFO
2025-08-30 00:46:51,807 [ scc.merge] DEBUG Cleaning remote branches created for merging
2025-08-30 00:46:51,807 [ scc.git] DEBUG Calling 'git remote'
2025-08-30 00:46:51,809 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2025-08-30 00:46:51,809 [ scc.git] DEBUG Calling 'git remote'
2025-08-30 00:46:51,811 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-30 00:46:51,811 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2025-08-30 00:46:51,811 [ scc.git] DEBUG Calling 'git remote'
2025-08-30 00:46:51,814 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-30 00:46:51,814 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2025-08-30 00:46:51,814 [ scc.git] DEBUG Calling 'git remote'
2025-08-30 00:46:51,816 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-30 00:46:51,816 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2025-08-30 00:46:51,816 [ scc.git] DEBUG Calling 'git remote'
2025-08-30 00:46:51,818 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-30 00:46:51,818 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2025-08-30 00:46:51,818 [ scc.git] DEBUG Calling 'git remote'
2025-08-30 00:46:51,820 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-30 00:46:51,821 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2025-08-30 00:46:51,821 [ scc.git] DEBUG Calling 'git remote'
2025-08-30 00:46:51,823 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-30 00:46:51,823 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2025-08-30 00:46:51,823 [ scc.git] DEBUG Calling 'git remote'
2025-08-30 00:46:51,825 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-30 00:46:51,825 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2025-08-30 00:46:51,825 [ scc.git] DEBUG Calling 'git remote'
2025-08-30 00:46:51,827 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-30 00:46:51,827 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2025-08-30 00:46:51,827 [ scc.git] DEBUG Calling 'git remote'
2025-08-30 00:46:51,830 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-30 00:46:51,830 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-08-30 00:46:51,830 [ scc.git] DEBUG Calling 'git remote'
2025-08-30 00:46:51,832 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-30 00:46:51,832 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-08-30 00:46:51,832 [ scc.git] DEBUG Calling 'git remote'
2025-08-30 00:46:51,834 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-30 00:46:51,834 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-08-30 00:46:51,834 [ scc.git] DEBUG Calling 'git remote'
2025-08-30 00:46:51,836 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-30 00:46:51,836 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-08-30 00:46:51,836 [ scc.git] DEBUG Calling 'git remote'
2025-08-30 00:46:51,839 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-30 00:46:51,839 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-08-30 00:46:51,839 [ scc.git] DEBUG Calling 'git remote'
2025-08-30 00:46:51,841 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-30 00:46:51,841 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-08-30 00:46:51,841 [ scc.git] DEBUG Calling 'git remote'
2025-08-30 00:46:51,843 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-30 00:46:51,843 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-08-30 00:46:51,843 [ scc.git] DEBUG Calling 'git remote'
2025-08-30 00:46:51,845 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-30 00:46:51,845 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-08-30 00:46:51,845 [ scc.git] DEBUG Calling 'git remote'
2025-08-30 00:46:51,848 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-30 00:46:51,848 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-08-30 00:46:51,848 [ scc.git] DEBUG Calling 'git remote'
2025-08-30 00:46:51,850 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-30 00:46:51,850 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-08-30 00:46:51,850 [ scc.git] DEBUG Calling 'git remote'
2025-08-30 00:46:51,852 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-30 00:46:51,852 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-08-30 00:46:51,852 [ scc.git] DEBUG Calling 'git remote'
2025-08-30 00:46:51,855 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-30 00:46:51,855 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-08-30 00:46:51,855 [ scc.git] DEBUG Calling 'git remote'
2025-08-30 00:46:51,857 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-30 00:46:51,857 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-08-30 00:46:51,857 [ scc.git] DEBUG Calling 'git remote'
2025-08-30 00:46:51,859 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.10.4-SNAPSHOT
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD 8ac9c2b] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798ce
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD de2cd18] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2025-08-30 00:47:41,885 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2025-08-30 00:47:51,858 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2025-08-30 00:47:54,559 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-08-30 00:47:59,741 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-08-30 00:48:39,306 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
[Pipeline] archiveArtifacts
Archiving artifacts
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: SUCCESS
![[Jenkins]](/jenkins/static/eb00aee0/images/svgs/logo.svg){kind=logo}
