00:39:00Started by upstream project "Trigger" build number 7200:39:00originally caused by:
00:39:00 Started by timer
00:39:00Running as SYSTEM
00:39:00Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
00:39:00The recommended git tool is: NONE
00:39:00No credentials specified
00:39:00 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
00:39:00Fetching changes from the remote Git repository
00:39:00 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
00:39:00Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git00:39:00 > git --version # timeout=10
00:39:00 > git --version # 'git version 2.39.3'
00:39:00 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
00:39:05 > git rev-parse origin/merge_ci^{commit} # timeout=10
00:39:05Checking out Revision 436015b77305b2161a0dff36bf695a4ce98321df (origin/merge_ci)
00:39:05 > git config core.sparsecheckout # timeout=10
00:39:05 > git checkout -f 436015b77305b2161a0dff36bf695a4ce98321df # timeout=10
00:39:05Commit message: "Add version.properties to etc/omero.properties"
00:39:05 > git rev-list --no-walk 6f0487114606debc3c9e6f03d94059a04bc4faa4 # timeout=10
00:39:05Cleaning workspace
00:39:05 > git rev-parse --verify HEAD # timeout=10
00:39:05Resetting working tree
00:39:05 > git reset --hard # timeout=10
00:39:05 > git clean -fdx # timeout=10
00:39:05Copied 6 artifacts from "OMERO-python-superbuild-build" build number 6300:39:05[OMERO-build] $ /bin/bash -xe /tmp/jenkins7741392421809616119.sh
00:39:05+ mv omero-scripts/dist/omero_scripts-5.8.3.dev0.tar.gz .
00:39:05+ cd src
00:39:05+ export OMERO_BRANCH=merge_ci
00:39:05+ OMERO_BRANCH=merge_ci
00:39:05+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
00:39:05+ source /home/omero/settings.env
00:39:05++ OMERO_DB_HOST=pg
00:39:05++ OMERO_DB_USER=postgres
00:39:05++ OMERO_DB_PASS=
00:39:05++ OMERO_ROOT_PASS=omero
00:39:05++ OMERO_DATA_DIR=/OMERO
00:39:05++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:39:05+ python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
00:39:09+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl00:39:10Collecting zeroc-ice==3.6.5
00:39:11 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
00:39:12WARNING: You are using pip version 21.2.3; however, version 24.0 is available.
00:39:12You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
00:39:13+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py
00:39:13Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (69.5.1)
00:39:14Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.2)
00:39:14Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0)
00:39:14Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18)
00:39:14Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0)
00:39:14Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4)
00:39:14Requirement already satisfied: numpy in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4)
00:39:14Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0)
00:39:14Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5)
00:39:14Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1)
00:39:14Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2)
00:39:14Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6)
00:39:14Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2)
00:39:14Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2)
00:39:14WARNING: You are using pip version 21.2.3; however, version 24.0 is available.
00:39:14You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
00:39:14+ source docs/hudson/OMERO.sh
00:39:14++ set -e
00:39:14++ set -u
00:39:14++ set -x
00:39:14++ source docs/hudson/functions.sh
00:39:14++ echo Building merge_ci
00:39:14Building merge_ci
00:39:14++ python3 ./build.py build-dev release-all
00:39:14OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
00:39:15Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:39:1500:39:15check-ivy:
00:39:15Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
00:39:15Created dir: /home/omero/workspace/OMERO-build/src/target
00:39:16:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
00:39:16:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:39:1700:39:17build-scons:
00:39:17Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:39:18No sub-builds to iterate on
00:39:18Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:39:1800:39:18buildlist:
00:39:18:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
00:39:18:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:39:1900:39:19clean:
00:39:19Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:39:19Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:39:1900:39:19python-clean:
00:39:19WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:39:19/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-467-436015b773-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:39:19 warnings.warn(
00:39:19running clean
00:39:19Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
00:39:19Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:39:1900:39:19python-clean:
00:39:19WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:39:19/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-467-436015b773-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:39:19 warnings.warn(
00:39:19running clean
00:39:19Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
00:39:19Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:39:19Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:39:19Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:39:2000:39:20python-clean:
00:39:20WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:39:20/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-467-436015b773-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:39:20 warnings.warn(
00:39:20running clean
00:39:20Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
00:39:20Deleting directory /home/omero/workspace/OMERO-build/src/target
00:39:2000:39:20build-scons:
00:39:20Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:39:2000:39:20build:
00:39:20No sub-builds to iterate on
00:39:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:39:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:39:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:39:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:39:2000:39:20tools-init:
00:39:20no-op
00:39:2000:39:20retrieve:
00:39:20:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
00:39:20:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:39:4600:39:46prepare:
00:39:46Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:39:46Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
00:39:46Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
00:39:46Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:39:46Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:39:46Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:39:46Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
00:39:46Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:39:46Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:39:46Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:39:46Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:39:46Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:39:46Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:39:46Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:39:46Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:39:4600:39:46pre-compile:
00:39:46Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:39:46Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:39:46Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:39:46Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:39:46Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:39:4600:39:46compile:
00:39:46no-op
00:39:4600:39:46package:
00:39:46Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
00:39:4700:39:47install:
00:39:47:: delivering :: omero#omero_client;working@2fed98c19e20 :: 5.6.3-467-436015b773-ice36 :: integration :: Thu May 16 00:39:20 UTC 2024
00:39:47 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
00:39:47:: publishing :: omero#omero_client
00:39:47 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-467-436015b773-ice36/omero_client-5.6.3-467-436015b773-ice36.jar
00:39:47 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-467-436015b773-ice36/omero_client-5.6.3-467-436015b773-ice36.xml
00:39:47Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:39:47Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:39:4700:39:47retrieve:
00:39:47:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
00:39:47:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:39:47Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:39:4700:39:47dist:
00:39:47Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
00:39:47Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
00:39:47Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:39:47Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.8.3.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:39:47Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
00:39:47Copying 28 files to /home/omero/workspace/OMERO-build/src/dist
00:39:47Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
00:39:48Entering /home/omero/workspace/OMERO-build/src/components/tests...
00:39:48Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:39:4800:39:48copy-licenses:
00:39:48Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:39:48Created dir: /home/omero/workspace/OMERO-build/src/dist/share
00:39:48Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
00:39:4800:39:48copy-history:
00:39:48Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:39:4800:39:48copy-etc:
00:39:48Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
00:39:48Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
00:39:4900:39:49copy-sql:
00:39:49Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
00:39:5500:39:55copy-server:
00:39:55 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
00:39:5500:39:55copy-client:
00:39:55Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
00:39:56 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
00:39:5700:39:57update-version:
00:39:57Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
00:39:5700:39:57create-workdirs:
00:39:57Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
00:39:57Created dir: /home/omero/workspace/OMERO-build/src/dist/var
00:39:5700:39:57copy-luts:
00:39:57Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:39:57Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:39:5700:39:57test-compile:
00:39:57:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:39:57Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:39:57Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:39:57Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:39:57Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:39:57Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:39:57Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:39:57Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:39:5800:39:58testng-init:
00:39:58:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
00:39:58:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:0100:40:01,197 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
00:40:0100:40:01,200 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - No custom configurators were discovered as a service.
00:40:0100:40:01,200 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
00:40:0100:40:01,204 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
00:40:0100:40:01,204 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
00:40:0100:40:01,205 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
00:40:0100:40:01,205 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
00:40:0100:40:01,205 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
00:40:0100:40:01,207 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
00:40:0100:40:01,208 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
00:40:0100:40:01,208 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:40:0100:40:01,209 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@39b266b2 - Resource [logback.xml] occurs multiple times on the classpath.
00:40:0100:40:01,209 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@39b266b2 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:40:0100:40:01,209 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@39b266b2 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
00:40:0100:40:01,458 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
00:40:0100:40:01,459 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
00:40:0100:40:01,483 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
00:40:0100:40:01,486 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5ea7ad41 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
00:40:0100:40:01,486 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5ea7ad41 - Please move "immediateFlush" property into the enclosing appender.
00:40:0100:40:01,555 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5ea7ad41 - Setting the "immediateFlush" property of the enclosing appender to true
00:40:0100:40:01,556 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
00:40:0100:40:01,556 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
00:40:0100:40:01,556 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
00:40:0100:40:01,556 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
00:40:0100:40:01,556 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
00:40:0100:40:01,556 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
00:40:0100:40:01,557 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3dc70c5a - End of configuration.
00:40:0100:40:01,560 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48d46169 - Registering current configuration as safe fallback point
00:40:0100:40:01,560 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 353 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
00:40:0100:40:01lifecycle.test-compile:
00:40:01Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:40:01Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:40:02warning: [options] bootstrap class path not set in conjunction with -source 8
00:40:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:04import omero.grid.RawAccessRequest;
00:40:04 ^
00:40:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:04import omero.grid.RawAccessRequest;
00:40:04 ^
00:40:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:04import omero.grid.RawAccessRequest;
00:40:04 ^
00:40:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
00:40:05import omero.model.ImportJob;
00:40:05 ^
00:40:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:40:05import omero.model.ImportJobI;
00:40:05 ^
00:40:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
00:40:05 IObject link = (IObject) linkClass.newInstance();
00:40:05 ^
00:40:05 where T is a type-variable:
00:40:05 T extends Object declared in class Class
00:40:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
00:40:06 T copy = (T) obj.getClass().newInstance();
00:40:06 ^
00:40:06 where T is a type-variable:
00:40:06 T extends Object declared in class Class
00:40:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:06 RawAccessRequest raw = new RawAccessRequest();
00:40:06 ^
00:40:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:06 RawAccessRequest raw = new RawAccessRequest();
00:40:06 ^
00:40:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:40:06 raw.repoUuid = legacy.root().getHash().getValue();
00:40:06 ^
00:40:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
00:40:06 raw.command = "rm";
00:40:06 ^
00:40:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
00:40:06 raw.args = Arrays.asList(path);
00:40:06 ^
00:40:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
00:40:06 final IObject link = linkClass.newInstance();
00:40:06 ^
00:40:06 where T is a type-variable:
00:40:06 T extends Object declared in class Class
00:40:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
00:40:06 originalLink.setChild(annotationClass.newInstance());
00:40:06 ^
00:40:06 where T is a type-variable:
00:40:06 T extends Object declared in class Class
00:40:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:40:07 RoiResult r = svc.findByImage(id, new RoiOptions());
00:40:07 ^
00:40:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:07 final RawAccessRequest request = new RawAccessRequest();
00:40:07 ^
00:40:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:07 final RawAccessRequest request = new RawAccessRequest();
00:40:07 ^
00:40:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:40:07 request.repoUuid = repo.root().getHash().getValue();
00:40:07 ^
00:40:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
00:40:07 request.command = "exists";
00:40:07 ^
00:40:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
00:40:07 request.args = Collections.singletonList(dirPath);
00:40:07 ^
00:40:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:07 final RawAccessRequest request = new RawAccessRequest();
00:40:07 ^
00:40:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:07 final RawAccessRequest request = new RawAccessRequest();
00:40:07 ^
00:40:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:40:07 request.repoUuid = repo.root().getHash().getValue();
00:40:07 ^
00:40:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
00:40:07 request.command = "exists";
00:40:07 ^
00:40:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
00:40:07 request.args = Collections.singletonList(dirName);
00:40:07 ^
00:40:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
00:40:07 final ImportJob importJob = new ImportJobI();
00:40:07 ^
00:40:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:40:07 final ImportJob importJob = new ImportJobI();
00:40:07 ^
00:40:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
00:40:07 importJob.setImageName(omero.rtypes.rstring(name));
00:40:07 ^
00:40:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
00:40:07 importJob.setImageDescription(omero.rtypes.rstring(desc));
00:40:07 ^
00:40:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:40:07 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:40:07 ^
00:40:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:40:07 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:40:07 ^
00:40:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:40:07 final String savedName = sent.getImageName().getValue().toString();
00:40:07 ^
00:40:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:40:07 final String savedDesc = sent.getImageDescription().getValue().toString();
00:40:07 ^
00:40:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:40:07 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:40:07 ^
00:40:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:40:07 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:40:07 ^
00:40:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:40:07 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
00:40:07 ^
00:40:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:40:07 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
00:40:07 ^
00:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:40:08 RoiResult r = svc.findByImage(image.getId().getValue(),
00:40:08 ^
00:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:08 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:40:08 ^
00:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:08 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:40:08 ^
00:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:08 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:40:08 ^
00:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:08 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:40:08 ^
00:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
00:40:08 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
00:40:08 ^
00:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:08 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:40:08 ^
00:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
00:40:08 table = svc.getTable(f.getId().getValue());
00:40:08 ^
00:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:40:08 RoiResult r = svc.findByImage(image.getId().getValue(),
00:40:08 ^
00:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:40:08 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
00:40:08 ^
00:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:40:08 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
00:40:08 ^
00:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:40:08 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
00:40:08 ^
00:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:40:08 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
00:40:08 ^
00:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:08 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:40:08 ^
00:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:08 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:40:08 ^
00:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:08 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:40:08 ^
00:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:08 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:40:08 ^
00:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
00:40:08 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:40:08 ^
00:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:08 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:40:08 ^
00:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:08 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:40:08 ^
00:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:08 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:40:08 ^
00:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:08 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:40:08 ^
00:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:08 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:40:08 ^
00:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:08 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:40:08 ^
00:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:08 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:40:08 ^
00:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:08 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:40:08 ^
00:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:08 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:40:08 ^
00:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:08 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:40:08 ^
00:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:08 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:40:08 ^
00:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:08 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:40:08 ^
00:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:40:08 svc.getShapeStatsRestricted(
00:40:08 ^
00:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:40:08 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
00:40:08 ^
00:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:40:08 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:40:08 ^
00:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:40:08 request.typesToIgnore = Collections.singletonList("TagAnnotation");
00:40:08 ^
00:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:40:08 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
00:40:08 ^
00:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:40:08 request.typesToIgnore = Collections.singletonList("Annotation");
00:40:08 ^
00:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:40:08 request.typesToIgnore = Collections.singletonList("Annotation");
00:40:08 ^
00:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:40:08 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:40:08 ^
00:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:40:08 p2.setRelatedTo(p1);
00:40:08 ^
00:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:40:08 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
00:40:08 ^
00:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:40:08 pixels1.setRelatedTo(pixels2);
00:40:08 ^
00:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:40:08 Pixels pixels = pixels1.getRelatedTo();
00:40:08 ^
00:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:40:08 Assert.assertNull(pixels1.getRelatedTo());
00:40:08 ^
00:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:40:08 pixels1.setRelatedTo(pixels2);
00:40:08 ^
00:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:40:08 Pixels pixels = pixels1.getRelatedTo();
00:40:08 ^
00:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:40:08 Assert.assertNull(pixels1.getRelatedTo());
00:40:08 ^
00:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:08 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:40:08 ^
00:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:08 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:40:08 ^
00:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:08 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:40:08 ^
00:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:08 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:40:08 ^
00:40:09Note: Some input files use unchecked or unsafe operations.
00:40:09Note: Recompile with -Xlint:unchecked for details.
00:40:0988 warnings
00:40:09Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1117539780.tmp
00:40:09Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
00:40:09:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:09:: delivering :: omero#OmeroJava-test;working@2fed98c19e20 :: 5.6.3-467-436015b773-ice36 :: integration :: Thu May 16 00:39:57 UTC 2024
00:40:09 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
00:40:09:: publishing :: omero#OmeroJava-test
00:40:09 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-467-436015b773-ice36.jar
00:40:09 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-467-436015b773-ice36.xml
00:40:0900:40:09build-eclipse:
00:40:09No sub-builds to iterate on
00:40:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:40:0900:40:09retrieve:
00:40:09:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
00:40:09:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:1200:40:12prepare:
00:40:12Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:40:1300:40:13release-clients:
00:40:13Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-467-436015b773-ice36.zip
00:40:2000:40:20release-zip:
00:40:20Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-467-436015b773-ice36.zip
00:40:3300:40:33BUILD SUCCESSFUL
00:40:33Total time: 1 minute 18 seconds
00:40:33++ '[' -d .git ']'
00:40:33++ python3 ./build.py release-src
00:40:33OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
00:40:33Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:40:3400:40:34release-src-git:
00:40:34Releasing openmicroscopy-5.6.3-467-436015b773-ice36
00:40:36 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-467-436015b773-ice36.zip
00:40:36 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-467-436015b773-ice36-base.zip
00:40:3800:40:38BUILD SUCCESSFUL
00:40:38Total time: 4 seconds
00:40:38++ echo BUILD_NUMBER=64
00:40:38++ echo OMERO_BRANCH=merge_ci
00:40:38++ git_info
00:40:38+++ git rev-parse HEAD
00:40:38++ HEAD=436015b77305b2161a0dff36bf695a4ce98321df
00:40:38++ git log --max-count=1 436015b77305b2161a0dff36bf695a4ce98321df
00:40:38++ env
00:40:38++ sort
00:40:38Archiving artifacts
00:41:08Finished: SUCCESS
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