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Started by upstream project "BIOFORMATS-test-repo" build number 297 originally caused by: Started by upstream project "Trigger" build number 319 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins16458654528495030701.sh + '[' zeiss-tiff = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_47032_merge_ci -v /uod/idr/repos/curated/zeiss-tiff:/data -v /uod/idr-scratch/merge-ci/curated/zeiss-tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/maven-metadata.xml [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/metakit/5.3.8-SNAPSHOT/maven-metadata.xml [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/maven-metadata.xml [resolver:resolve] Resolving artifacts [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/maven-metadata.xml [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/metakit/5.3.8-SNAPSHOT/maven-metadata.xml [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/maven-metadata.xml compile-tests: [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/maven-metadata.xml [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/metakit/5.3.8-SNAPSHOT/maven-metadata.xml [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/maven-metadata.xml [resolver:resolve] Resolving artifacts [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/maven-metadata.xml [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/metakit/5.3.8-SNAPSHOT/maven-metadata.xml [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/maven-metadata.xml [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 04:10:32,023 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 04:10:32,024 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 04:10:32,024 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:10:32,025 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:10:32,026 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 04:10:32,026 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 04:10:32,026 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 04:10:32,026 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:10:32,027 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:10:32,027 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 04:10:32,027 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 04:10:32,027 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 04:10:32,250 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 04:10:32,250 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 04:10:32,278 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 04:10:32,278 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 04:10:32,286 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 04:10:32,286 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 04:10:32,286 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 04:10:32,286 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 04:10:32,286 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 04:10:32,287 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 04:10:32,287 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 260 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-24 04:10:32,297] [main] java.version = 1.8.0_342 [testng] 04:10:32,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:10:32,301 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:10:32,346 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-24_04-10-32.log] [testng] 04:10:32,347 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-12-24 04:10:32,350] [main] testng.directory = /data [testng] [2024-12-24 04:10:32,350] [main] testng.configDirectory = /config [testng] [2024-12-24 04:10:32,362] [main] testng.multiplier = 1.0 [testng] [2024-12-24 04:10:32,363] [main] testng.in-memory = false [testng] [2024-12-24 04:10:32,363] [main] testng.allow-missing = false [testng] [2024-12-24 04:10:32,363] [main] user.language = en [testng] [2024-12-24 04:10:32,363] [main] user.country = ${user.country} [testng] [2024-12-24 04:10:32,363] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-12-24 04:13:16,765] [main] ---------------------------------------- [testng] [2024-12-24 04:13:16,766] [main] Total files: 15735 [testng] [2024-12-24 04:13:16,766] [main] Scan time: 164.402 s (10 ms/file) [testng] [2024-12-24 04:13:16,766] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 125 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-24 04:16:37,926] [pool-1-thread-1] Initializing /data/converted/converted/damian-compressed.tif: [testng] 04:16:37,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 04:16:37,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:16:37,928 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-24_04-16-37.log] [testng] 04:16:37,928 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1bf7fb6b - End of configuration. [testng] [2024-12-24 04:16:39,134] [pool-1-thread-12] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_03.tif: [testng] 04:16:39,134 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 04:16:39,134 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:16:39,135 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-24_04-16-39.log] [testng] 04:16:39,135 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17d8d56b - End of configuration. [testng] [2024-12-24 04:16:41,507] [pool-1-thread-11] Initializing /data/converted/rolf/example_2-2010_11_25.tif: [testng] 04:16:41,507 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 04:16:41,507 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:16:41,508 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-24_04-16-41.log] [testng] 04:16:41,508 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2fda5e5 - End of configuration. [testng] [2024-12-24 04:16:42,652] [pool-1-thread-10] Initializing /data/converted/karsten/Bild1.tif: [testng] 04:16:42,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 04:16:42,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:16:42,652 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-24_04-16-42.log] [testng] 04:16:42,653 |-INFO in ch.qos.logback.core.sift.SiftProcessor@492f7a1 - End of configuration. [testng] [2024-12-24 04:16:43,649] [pool-1-thread-9] Initializing /data/converted/eirinn/12_2_2009-16-hes5-brdu-proper_position(52).tif: [testng] 04:16:43,649 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 04:16:43,649 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:16:43,649 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-24_04-16-43.log] [testng] 04:16:43,650 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c6c07f5 - End of configuration. [testng] [2024-12-24 04:16:44,919] [pool-1-thread-8] Initializing /data/converted/eirinn/5_6_2009-dj9-03_a01_01.tif: [testng] 04:16:44,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 04:16:44,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:16:44,920 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-24_04-16-44.log] [testng] 04:16:44,920 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49a4faa3 - End of configuration. [testng] [2024-12-24 04:16:46,409] [pool-1-thread-7] Initializing /data/converted/darren/section0002_w1.tif: [testng] 04:16:46,409 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 04:16:46,409 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:16:46,409 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-24_04-16-46.log] [testng] 04:16:46,410 |-INFO in ch.qos.logback.core.sift.SiftProcessor@437a11bf - End of configuration. [testng] [2024-12-24 04:16:47,517] [pool-1-thread-6] Initializing /data/scott/Slide133-04.tif: [testng] 04:16:47,517 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 04:16:47,517 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:16:47,517 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-24_04-16-47.log] [testng] 04:16:47,518 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b3924d - End of configuration. [testng] [2024-12-24 04:16:48,730] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_8.tif: [testng] 04:16:48,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 04:16:48,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:16:48,731 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-24_04-16-48.log] [testng] 04:16:48,731 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13e42047 - End of configuration. [testng] [2024-12-24 04:16:50,476] [pool-1-thread-4] Initializing /data/converted/lior/live+cf5b.tif: [testng] 04:16:50,476 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 04:16:50,476 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:16:50,477 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-24_04-16-50.log] [testng] 04:16:50,477 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b98bef3 - End of configuration. [testng] [2024-12-24 04:16:51,764] [pool-1-thread-3] Initializing /data/converted/karsten/Bild2.tif: [testng] 04:16:51,764 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 04:16:51,764 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:16:51,765 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-24_04-16-51.log] [testng] 04:16:51,765 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2973f285 - End of configuration. [testng] [2024-12-24 04:16:52,966] [pool-1-thread-2] Initializing /data/converted/converted/2chz.tif: [testng] 04:16:52,966 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 04:16:52,966 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:16:52,966 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-24_04-16-52.log] [testng] 04:16:52,967 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b15d458 - End of configuration. [testng] [2024-12-24 04:17:21,859] [pool-1-thread-1] Initializing /data/converted/converted/2chzt.tif: [testng] [2024-12-24 04:17:30,687] [pool-1-thread-11] Initializing /data/qa-21570/250618_J1_diff_D3-2-0004.tif: [testng] [2024-12-24 04:17:32,367] [pool-1-thread-7] Initializing /data/converted/dietmar/hmads-24h-bac1-7-af647-af488-rho-1day-hyb-csk-2007-06-29-0008_position(113).tif: [testng] [2024-12-24 04:17:34,267] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_11.tif: [testng] [2024-12-24 04:17:38,536] [pool-1-thread-10] Initializing /data/converted/joseph/E-2009-0004.tif: [testng] [2024-12-24 04:17:41,139] [pool-1-thread-3] Initializing /data/converted/dan/adultnr1.tif: [testng] [2024-12-24 04:17:53,883] [pool-1-thread-4] Initializing /data/converted/michel/d.tif: [testng] [2024-12-24 04:17:55,776] [pool-1-thread-8] Initializing /data/converted/markus/HeLa-Reggie-GFP_ZT_fast-DCV-CI-measured-PSF.tif: [testng] [2024-12-24 04:18:08,449] [pool-1-thread-11] Initializing /data/converted/markus/Smart_Experiment_4ch-T-time-stitched.tif: [testng] [2024-12-24 04:18:36,556] [pool-1-thread-4] Initializing /data/converted/converted/wtzer_series76_z003_ch00-with-rois.tif: [testng] [2024-12-24 04:18:58,325] [pool-1-thread-3] Initializing /data/scott/Slide133-01.tif: [testng] [2024-12-24 04:19:05,086] [pool-1-thread-4] Initializing /data/converted/othmar/z-stack.tif: [testng] [2024-12-24 04:19:35,730] [pool-1-thread-3] Initializing /data/converted/kelsey/1300x1030BW.tif: [testng] [2024-12-24 04:20:06,963] [pool-1-thread-3] Initializing /data/qa-21570/250618_J1_diff_D3-2-0002.tif: [testng] [2024-12-24 04:20:35,112] [pool-1-thread-2] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-six.tif: [testng] [2024-12-24 04:20:39,680] [pool-1-thread-3] Initializing /data/qa-21570/20150421_HepG2_yH2AX_DAPI_0.5h_5GyDOWN_1512_cell04_SIR_ALX.dv_comp.tif: [testng] [2024-12-24 04:20:55,220] [pool-1-thread-3] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_08.tif: [testng] [2024-12-24 04:21:33,214] [pool-1-thread-9] Initializing /data/converted/markus/Mouse-newborn-panorama.tif: [testng] [2024-12-24 04:22:32,793] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_10.tif: [testng] [2024-12-24 04:26:14,326] [pool-1-thread-2] Initializing /data/dorai/F_ZImage10_(X10)_C.tif: [testng] [2024-12-24 04:26:19,479] [pool-1-thread-5] Initializing /data/converted/converted/deconvolve6_pseudo_tl000_zs000.tif: [testng] [2024-12-24 04:26:50,513] [pool-1-thread-5] Initializing /data/converted/markus/HighSpeedParas.tif: [testng] [2024-12-24 04:27:01,914] [pool-1-thread-2] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-0016.tif: [testng] [2024-12-24 04:27:04,492] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_21.tif: [testng] [2024-12-24 04:27:11,808] [pool-1-thread-6] Initializing /data/converted/joseph/Alike_best_example_but_WORKS_FINE_maybe_cause_shorter_expose.tif: [testng] [2024-12-24 04:29:09,300] [pool-1-thread-10] Initializing /data/converted/markus/Mouse-newborn-panorama_lossless_compressed.tif: [testng] [2024-12-24 04:29:32,295] [pool-1-thread-6] Initializing /data/converted/ville/MultiCh-RGB/pollen_rgb.tif: [testng] [2024-12-24 04:30:04,435] [pool-1-thread-10] Initializing /data/converted/markus/6ch-Z-stack_deconvolved.tif: [testng] [2024-12-24 04:30:18,860] [pool-1-thread-6] Initializing /data/converted/monica/Monica_elegans_movie.tif: [testng] [2024-12-24 04:30:42,239] [pool-1-thread-2] Initializing /data/converted/rachel/40K 30s A2.tif: [testng] [2024-12-24 04:31:20,527] [pool-1-thread-2] Initializing /data/converted/stephan/notok2.tif: [testng] [2024-12-24 04:31:24,653] [pool-1-thread-9] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sectioned.tif: [testng] [2024-12-24 04:34:02,912] [pool-1-thread-2] Initializing /data/converted/converted/damian.tif: [testng] [2024-12-24 04:34:38,809] [pool-1-thread-2] Initializing /data/converted/james/Sylvain_run3_1Gy_Live7-2008-0019.tif: [testng] [2024-12-24 04:37:53,405] [pool-1-thread-7] Initializing /data/converted/converted/mri-stack.tif: [testng] [2024-12-24 04:37:56,389] [pool-1-thread-2] Initializing /data/qa-21570/250618_J1_diff_D3-2-0003.tif: [testng] [2024-12-24 04:38:35,435] [pool-1-thread-7] Initializing /data/scott/Slide133-08.tif: [testng] [2024-12-24 04:38:38,195] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_23.tif: [testng] [2024-12-24 04:38:48,899] [pool-1-thread-12] Initializing /data/converted/karsten/247096n3s3s9.tif: [testng] [2024-12-24 04:39:23,918] [pool-1-thread-4] Initializing /data/converted/markus/Branchiostoma_6x12_MosaiX_Tiles_color.tif: [testng] [2024-12-24 04:39:31,321] [pool-1-thread-7] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-ten.tif: [testng] [2024-12-24 04:40:12,977] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_9.tif: [testng] [2024-12-24 04:42:47,650] [pool-1-thread-12] Initializing /data/converted/markus/Brain_high_dynamic_range_imaging_Z-stack.tif: [testng] [2024-12-24 04:45:09,256] [pool-1-thread-3] Initializing /data/converted/thomas/test_axiocam_3_1.tif: [testng] [2024-12-24 04:45:16,356] [pool-1-thread-10] Initializing /data/converted/joseph/E-2009_0022.tif: [testng] [2024-12-24 04:46:14,909] [pool-1-thread-3] Initializing /data/converted/michel/c.tif: [testng] [2024-12-24 04:47:21,525] [pool-1-thread-3] Initializing /data/converted/darren/section0001_w1.tif: [testng] [2024-12-24 04:47:43,792] [pool-1-thread-7] Initializing /data/converted/eirinn/pharm3-saline2-0147_11.tif: [testng] [2024-12-24 04:48:10,636] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_17.tif: [testng] [2024-12-24 04:49:46,844] [pool-1-thread-9] Initializing /data/converted/markus/PC12_neuroblastoma_Fura2_exp#9.tif: [testng] [2024-12-24 04:49:54,843] [pool-1-thread-12] Initializing /data/converted/markus/Confidence_ratio_image_PC12_neuroblastoma_Fura2_exp#9-2.tif: [testng] [2024-12-24 04:51:31,736] [pool-1-thread-4] Initializing /data/converted/lior/live+cf2b.tif: [testng] [2024-12-24 04:53:11,103] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_3.tif: [testng] [2024-12-24 04:53:53,838] [pool-1-thread-2] Initializing /data/converted/dietmar/138.tif: [testng] [2024-12-24 04:54:14,335] [pool-1-thread-11] Initializing /data/converted/rolf/example_1-2010_11_25.tif: [testng] [2024-12-24 04:55:08,260] [pool-1-thread-11] Initializing /data/converted/sebastien/test.tif: [testng] [2024-12-24 04:58:23,178] [pool-1-thread-8] Initializing /data/converted/markus/30channels_exposure-series.tif: [testng] [2024-12-24 04:59:30,672] [pool-1-thread-7] Initializing /data/converted/joseph/E-2009-0001a.tif: [testng] [2024-12-24 05:03:21,882] [pool-1-thread-3] Initializing /data/converted/dietmar/137.tif: [testng] [2024-12-24 05:03:26,499] [pool-1-thread-8] Initializing /data/converted/markus/Mouse-newborn-panorama_JPEG_5percent_compressed.tif: [testng] [2024-12-24 05:04:52,356] [pool-1-thread-10] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast.tif: [testng] [2024-12-24 05:05:00,192] [pool-1-thread-8] Initializing /data/converted/markus/PhaseGFP-MosaiX-Timelapse_Tiles.tif: [testng] [2024-12-24 05:07:30,354] [pool-1-thread-4] Initializing /data/converted/rachel/40K 30s A1.tif: [testng] [2024-12-24 05:08:16,194] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_5.tif: [testng] [2024-12-24 05:08:29,639] [pool-1-thread-4] Initializing /data/converted/othmar/mozaic.tif: [testng] [2024-12-24 05:10:53,029] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_13.tif: [testng] [2024-12-24 05:11:15,498] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_14.tif: [testng] [2024-12-24 05:15:27,245] [pool-1-thread-4] Initializing /data/converted/markus/Material_color_image_HRc_microscanned_4x3K.tif: [testng] [2024-12-24 05:16:13,704] [pool-1-thread-4] Initializing /data/converted/michel/b.tif: [testng] [2024-12-24 05:16:51,712] [pool-1-thread-3] Initializing /data/converted/michel/e.tif: [testng] [2024-12-24 05:17:17,833] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_25.tif: [testng] [2024-12-24 05:17:27,634] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_2.tif: [testng] [2024-12-24 05:18:29,077] [pool-1-thread-3] Initializing /data/scott/Slide133-11.tif: [testng] [2024-12-24 05:19:18,351] [pool-1-thread-3] Initializing /data/converted/kelsey/650x514BW.tif: [testng] [2024-12-24 05:20:01,704] [pool-1-thread-3] Initializing /data/converted/dan/zstack_convalaria.tif: [testng] [2024-12-24 05:20:48,518] [pool-1-thread-2] Initializing /data/converted/shalin/ibidiuslide1-timelapse3_mid2.tif: [testng] [2024-12-24 05:20:57,514] [pool-1-thread-3] Initializing /data/converted/converted/wtzer_series76_z003_ch00.tif: [testng] [2024-12-24 05:21:38,565] [pool-1-thread-3] Initializing /data/converted/eirinn/12_16_2009-01-tara-hd-triple-5to15_position(1)5.tif: [testng] [2024-12-24 05:22:09,468] [pool-1-thread-8] Initializing /data/converted/eirinn/11_10_2009-01-lcstim-15-10-09_position(1).tif: [testng] [2024-12-24 05:23:11,265] [pool-1-thread-10] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sidebyside.tif: [testng] [2024-12-24 05:23:42,214] [pool-1-thread-1] Initializing /data/converted/nicolas/image.tif: [testng] [2024-12-24 05:24:27,540] [pool-1-thread-1] Initializing /data/converted/joseph/BEST_EXAMPLE_LONGER_EXPOSURE.tif: [testng] [2024-12-24 05:24:37,769] [pool-1-thread-11] Initializing /data/converted/cecilia/day 1 naked nb positive 1-2007-0055.tif: [testng] [2024-12-24 05:25:16,073] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_16.tif: [testng] [2024-12-24 05:25:44,515] [pool-1-thread-11] Initializing /data/converted/susan/BY4741NQ2.tif: [testng] [2024-12-24 05:26:32,907] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_24.tif: [testng] [2024-12-24 05:26:47,240] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_19.tif: [testng] [2024-12-24 05:26:55,746] [pool-1-thread-2] Initializing /data/converted/jeffrey/750-30-03.tif: [testng] [2024-12-24 05:27:47,025] [pool-1-thread-2] Initializing /data/converted/stephan/notok1.tif: [testng] [2024-12-24 05:28:31,263] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_15.tif: [testng] [2024-12-24 05:29:32,920] [pool-1-thread-7] Initializing /data/converted/david/snap-181518-0001.tif: [testng] [2024-12-24 05:30:15,551] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_22.tif: [testng] [2024-12-24 05:30:45,905] [pool-1-thread-3] Initializing /data/converted/eirinn/demo-tile.tif: [testng] [2024-12-24 05:30:48,677] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_12.tif: [testng] [2024-12-24 05:30:52,170] [pool-1-thread-4] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-widefield.tif: [testng] [2024-12-24 05:32:03,861] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_4.tif: [testng] [2024-12-24 05:37:33,423] [pool-1-thread-12] Initializing /data/converted/markus/MosaiX_irregular_Z-stack_with_autofocus.tif: [testng] [2024-12-24 05:38:46,334] [pool-1-thread-11] Initializing /data/converted/michel/a.tif: [testng] [2024-12-24 05:39:22,809] [pool-1-thread-11] Initializing /data/converted/ville/MultiCh-RGB/pollen_bw.tif: [testng] [2024-12-24 05:39:28,059] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_1.tif: [testng] [2024-12-24 05:39:45,463] [pool-1-thread-10] Initializing /data/converted/markus/Long_TL_CElegans.tif: [testng] [2024-12-24 05:40:13,069] [pool-1-thread-8] Initializing /data/converted/vladan/vladan.tif: [testng] [2024-12-24 05:40:15,788] [pool-1-thread-11] Initializing /data/converted/jan/SampleStack_Mosaic4x5_comb.tif: [testng] [2024-12-24 05:42:05,033] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_6.tif: [testng] [2024-12-24 05:42:30,393] [pool-1-thread-2] Initializing /data/converted/markus/Hypocampus_Tiles_with_stiching.tif: [testng] [2024-12-24 05:42:38,423] [pool-1-thread-3] Initializing /data/converted/dietmar/dapi-texasred-0015.tif: [testng] [2024-12-24 05:46:36,983] [pool-1-thread-2] Initializing /data/converted/sebastien/F1.tif: [testng] [2024-12-24 05:47:11,281] [pool-1-thread-4] Initializing /data/othmar/mozaic.tif: [testng] [2024-12-24 05:48:40,778] [pool-1-thread-9] Initializing /data/samples/mri-stack/mri-stack.tif: [testng] [2024-12-24 05:49:19,262] [pool-1-thread-9] Initializing /data/converted/miso/Aufnahme-184058-0002.tif: [testng] [2024-12-24 05:49:34,970] [pool-1-thread-8] Initializing /data/converted/strand/2Colors1Plane.tif: [testng] [2024-12-24 05:49:55,929] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_18.tif: [testng] [2024-12-24 05:50:06,932] [pool-1-thread-1] Initializing /data/converted/kelsey/432x342BW.tif: [testng] 05:59:03,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 05:59:03,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:59:03,243 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-24_05-59-03.log] [testng] 05:59:03,244 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60d53b73 - End of configuration. [testng] 06:34:40,897 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 06:34:40,897 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:34:40,900 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-24_06-34-40.log] [testng] 06:34:40,900 |-INFO in ch.qos.logback.core.sift.SiftProcessor@da77677 - End of configuration. [testng] 06:38:13,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 06:38:13,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:38:13,162 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-24_06-38-13.log] [testng] 06:38:13,162 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ef8cf89 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 6625, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 147 minutes 52 seconds Finished: SUCCESS