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Started by upstream project "BIOFORMATS-test-repo" build number 399
originally caused by:
 Started by upstream project "Trigger" build number 485
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@12
[BIOFORMATS-test-folder@12] $ /bin/bash -xe /tmp/jenkins8733959935415676780.sh
+ '[' scanr = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_63088_merge_ci -v /uod/idr/repos/curated/scanr:/data -v /uod/idr-scratch/merge-ci/curated/scanr:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test

test-automated:
   [testng] File leak detector installed
   [testng] 09:04:11,070 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
   [testng] 09:04:11,072 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service.
   [testng] 09:04:11,072 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 09:04:11,073 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 09:04:11,073 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 09:04:11,074 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 09:04:11,074 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 09:04:11,074 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 09:04:11,074 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 09:04:11,075 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 09:04:11,075 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 09:04:11,075 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 09:04:11,291 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 09:04:11,291 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 09:04:11,318 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 09:04:11,318 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 09:04:11,325 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 09:04:11,326 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 09:04:11,326 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 09:04:11,326 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 09:04:11,326 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration.
   [testng] 09:04:11,327 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point
   [testng] 09:04:11,327 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 253 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2025-05-19 09:04:11,336] [main] java.version = 1.8.0_342
   [testng] 09:04:11,340 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 09:04:11,340 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:04:11,383 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-05-19_09-04-11.log]
   [testng] 09:04:11,384 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration.
   [testng] [2025-05-19 09:04:11,386] [main] testng.directory = /data
   [testng] [2025-05-19 09:04:11,386] [main] testng.configDirectory = /config
   [testng] [2025-05-19 09:04:11,398] [main] testng.multiplier = 1.0
   [testng] [2025-05-19 09:04:11,398] [main] testng.in-memory = false
   [testng] [2025-05-19 09:04:11,398] [main] testng.allow-missing = false
   [testng] [2025-05-19 09:04:11,398] [main] user.language = fr
   [testng] [2025-05-19 09:04:11,398] [main] user.country = FR
   [testng] [2025-05-19 09:04:11,398] [main] Maximum heap size = 13653 MB
   [testng] Scanning for files...
   [testng] [2025-05-19 09:11:42,612] [main] ----------------------------------------
   [testng] [2025-05-19 09:11:42,612] [main] Total files: 2169
   [testng] [2025-05-19 09:11:42,612] [main] Scan time: 451.214 s (208 ms/file)
   [testng] [2025-05-19 09:11:42,613] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 18 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2025-05-19 11:43:27,674] [pool-1-thread-1] Initializing /data/embl/170309_Sec13_GM130m_001/experiment_descriptor.xml: 
   [testng] 11:43:27,675 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 11:43:27,675 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:43:27,676 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-05-19_11-43-27.log]
   [testng] 11:43:27,676 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9258a6d - End of configuration.
   [testng] [2025-05-19 11:48:38,005] [pool-1-thread-12] Initializing /data/ruben/TestPlate_Mock_01_001/experiment_descriptor.xml: 
   [testng] 11:48:38,006 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 11:48:38,006 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:48:38,007 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-05-19_11-48-38.log]
   [testng] 11:48:38,007 |-INFO in ch.qos.logback.core.sift.SiftProcessor@262c26cd - End of configuration.
   [testng] [2025-05-19 11:49:55,629] [pool-1-thread-11] Initializing /data/options/emptywells/0307-10--2007-05-30/experiment_descriptor.xml: 
   [testng] 11:49:55,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 11:49:55,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:49:55,631 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-05-19_11-49-55.log]
   [testng] 11:49:55,631 |-INFO in ch.qos.logback.core.sift.SiftProcessor@109b30e0 - End of configuration.
   [testng] [2025-05-19 11:54:29,723] [pool-1-thread-10] Initializing /data/ruben/161009test2/151009_002/experiment_descriptor.xml: 
   [testng] 11:54:29,724 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 11:54:29,724 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:54:29,725 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-05-19_11-54-29.log]
   [testng] 11:54:29,725 |-INFO in ch.qos.logback.core.sift.SiftProcessor@cc8729e - End of configuration.
   [testng] [2025-05-19 12:07:47,516] [pool-1-thread-9] Initializing /data/nadine/experiment_descriptor.xml: 
   [testng] 12:07:47,517 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 12:07:47,517 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 12:07:47,518 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-05-19_12-07-47.log]
   [testng] 12:07:47,518 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55348823 - End of configuration.
   [testng] [2025-05-19 12:07:55,176] [pool-1-thread-8] Initializing /data/public/idr0009/0307-10--2007-05-30/experiment_descriptor.xml: 
   [testng] 12:07:55,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 12:07:55,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 12:07:55,176 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-05-19_12-07-55.log]
   [testng] 12:07:55,177 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5fdb9e8d - End of configuration.
   [testng] [2025-05-19 12:12:18,810] [pool-1-thread-7] Initializing /data/ruben/plate_002/experiment_descriptor.xml: 
   [testng] 12:12:18,810 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 12:12:18,810 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 12:12:18,811 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-05-19_12-12-18.log]
   [testng] 12:12:18,812 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c4b168d - End of configuration.
   [testng] [2025-05-19 12:12:40,936] [pool-1-thread-6] Initializing /data/jcb/201301120/p17/experiment_descriptor.xml: 
   [testng] 12:12:40,936 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 12:12:40,936 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 12:12:40,937 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-05-19_12-12-40.log]
   [testng] 12:12:40,937 |-INFO in ch.qos.logback.core.sift.SiftProcessor@239713bb - End of configuration.
   [testng] [2025-05-19 12:30:04,745] [pool-1-thread-5] Initializing /data/embl/Maik_001/experiment_descriptor.xml: 
   [testng] 12:30:04,745 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 12:30:04,745 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 12:30:04,746 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-05-19_12-30-04.log]
   [testng] 12:30:04,746 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6fbc3c72 - End of configuration.
   [testng] [2025-05-19 12:31:24,750] [pool-1-thread-4] Initializing /data/ruben/scanr_no_labels/Peter/experiment_descriptor.xml: 
   [testng] 12:31:24,751 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 12:31:24,751 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 12:31:24,752 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-05-19_12-31-24.log]
   [testng] 12:31:24,752 |-INFO in ch.qos.logback.core.sift.SiftProcessor@337d5b6e - End of configuration.
   [testng] [2025-05-19 12:38:08,285] [pool-1-thread-3] Initializing /data/ruben/12-05-25_009/experiment_descriptor.xml: 
   [testng] 12:38:08,285 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 12:38:08,285 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 12:38:08,286 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-05-19_12-38-08.log]
   [testng] 12:38:08,286 |-INFO in ch.qos.logback.core.sift.SiftProcessor@287b6319 - End of configuration.
   [testng] [2025-05-19 12:41:08,682] [pool-1-thread-2] Initializing /data/christian/example/experiment_descriptor.xml: 
   [testng] 12:41:08,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 12:41:08,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 12:41:08,683 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-05-19_12-41-08.log]
   [testng] 12:41:08,684 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21dcdcb8 - End of configuration.
   [testng] [2025-05-19 12:44:49,788] [pool-1-thread-2] Initializing /data/ruben/280809_8wellLT_008/experiment_descriptor.xml: 
   [testng] [2025-05-19 12:48:48,663] [pool-1-thread-9] Initializing /data/ruben/161009test2/151009_001/experiment_descriptor.xml: 
   [testng] [2025-05-19 13:19:03,176] [pool-1-thread-7] Initializing /data/jcb/201301120/p2/experiment_descriptor.xml: 
   [testng] 13:54:17,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 13:54:17,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 13:54:17,717 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-05-19_13-54-17.log]
   [testng] 13:54:17,718 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b94eb25 - End of configuration.
   [testng] [2025-05-19 13:58:55,964] [pool-1-thread-5] Initializing /data/juergen/Experiment/experiment_descriptor.xml: 
   [testng] [2025-05-19 14:03:52,895] [pool-1-thread-5] Initializing /data/ruben/20100827_004/experiment_descriptor.xml: 
   [testng] [2025-05-19 14:15:39,933] [pool-1-thread-2] Initializing /data/gideon/experiment_descriptor.xml: 
   [testng] 14:30:24,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 14:30:24,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 14:30:24,915 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-05-19_14-30-24.log]
   [testng] 14:30:24,916 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ddeb18d - End of configuration.
Build was aborted
Calling Pipeline was cancelled
Finished: ABORTED