10:30:45Started by upstream project "Trigger" build number 14710:30:45originally caused by:
10:30:45 Started by user devspace10:30:45Running as SYSTEM
10:30:45Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
10:30:45The recommended git tool is: NONE
10:30:45No credentials specified
10:30:45 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
10:30:45Fetching changes from the remote Git repository
10:30:45 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
10:30:45Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git10:30:45 > git --version # timeout=10
10:30:45 > git --version # 'git version 2.39.3'
10:30:45 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
10:30:49 > git rev-parse origin/merge_ci^{commit} # timeout=10
10:30:49Checking out Revision 22ee6d815f3c2976ba4087d5a7989de1b6929e43 (origin/merge_ci)
10:30:49 > git config core.sparsecheckout # timeout=10
10:30:49 > git checkout -f 22ee6d815f3c2976ba4087d5a7989de1b6929e43 # timeout=10
10:30:50Commit message: "Add version.properties to etc/omero.properties"
10:30:50 > git rev-list --no-walk a8e300e65badef6b58e46f2c42bef5d24cefef37 # timeout=10
10:30:50Cleaning workspace
10:30:50 > git rev-parse --verify HEAD # timeout=10
10:30:50Resetting working tree
10:30:50 > git reset --hard # timeout=10
10:30:51 > git clean -fdx # timeout=10
10:30:51Copied 6 artifacts from "OMERO-python-superbuild-build" build number 12410:30:51[OMERO-build] $ /bin/bash -xe /tmp/jenkins10299085188119801549.sh
10:30:51+ mv omero-scripts/dist/omero_scripts-5.8.3.dev0.tar.gz .
10:30:51+ cd src
10:30:51+ export OMERO_BRANCH=merge_ci
10:30:51+ OMERO_BRANCH=merge_ci
10:30:51+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
10:30:51+ source /home/omero/settings.env
10:30:51++ OMERO_DB_HOST=pg
10:30:51++ OMERO_DB_USER=postgres
10:30:51++ OMERO_DB_PASS=
10:30:51++ OMERO_ROOT_PASS=omero
10:30:51++ OMERO_DATA_DIR=/OMERO
10:30:51++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
10:30:51+ python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
10:30:56+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl10:30:57Collecting zeroc-ice==3.6.5
10:30:58 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
10:31:00WARNING: You are using pip version 21.2.3; however, version 24.1.2 is available.
10:31:00You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
10:31:00+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py
10:31:00Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (71.1.0)
10:31:01Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.4)
10:31:01Requirement already satisfied: numpy<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4)
10:31:01Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5)
10:31:01Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2)
10:31:01Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4)
10:31:01Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0)
10:31:01Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0)
10:31:01Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1)
10:31:01Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0)
10:31:01Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18)
10:31:01Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2)
10:31:01Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2)
10:31:01Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6)
10:31:01WARNING: You are using pip version 21.2.3; however, version 24.1.2 is available.
10:31:01You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
10:31:01+ source docs/hudson/OMERO.sh
10:31:01++ set -e
10:31:01++ set -u
10:31:01++ set -x
10:31:01++ source docs/hudson/functions.sh
10:31:01++ echo Building merge_ci
10:31:01Building merge_ci
10:31:01++ python3 ./build.py build-dev release-all
10:31:01OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
10:31:01Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
10:31:0210:31:02check-ivy:
10:31:02Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
10:31:02Created dir: /home/omero/workspace/OMERO-build/src/target
10:31:02:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
10:31:02:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
10:31:0410:31:04build-scons:
10:31:04Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
10:31:04No sub-builds to iterate on
10:31:04Entering /home/omero/workspace/OMERO-build/src/components/tools...
10:31:0410:31:04buildlist:
10:31:04:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
10:31:04:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
10:31:0510:31:05clean:
10:31:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
10:31:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
10:31:0510:31:05python-clean:
10:31:05WARNING: '' not a valid package name; please use only .-separated package names in setup.py
10:31:05/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-484-22ee6d815f-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
10:31:05 warnings.warn(
10:31:05running clean
10:31:05Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
10:31:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
10:31:0510:31:05python-clean:
10:31:05WARNING: '' not a valid package name; please use only .-separated package names in setup.py
10:31:05/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-484-22ee6d815f-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
10:31:05 warnings.warn(
10:31:05running clean
10:31:05Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
10:31:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
10:31:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
10:31:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
10:31:0510:31:05python-clean:
10:31:05WARNING: '' not a valid package name; please use only .-separated package names in setup.py
10:31:05/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-484-22ee6d815f-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
10:31:05 warnings.warn(
10:31:05running clean
10:31:05Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
10:31:05Deleting directory /home/omero/workspace/OMERO-build/src/target
10:31:0610:31:06build-scons:
10:31:06Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
10:31:0610:31:06build:
10:31:06No sub-builds to iterate on
10:31:06Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
10:31:06Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
10:31:06Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
10:31:06Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
10:31:0610:31:06tools-init:
10:31:06no-op
10:31:0610:31:06retrieve:
10:31:06:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
10:31:06:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
10:31:3910:31:39prepare:
10:31:39Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
10:31:39Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
10:31:39Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
10:31:39Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
10:31:39Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
10:31:39Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
10:31:39Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
10:31:39Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
10:31:39Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
10:31:39Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
10:31:39Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
10:31:39Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
10:31:39Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
10:31:39Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
10:31:39Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
10:31:3910:31:39pre-compile:
10:31:39Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
10:31:39Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
10:31:39Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
10:31:39Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
10:31:39Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
10:31:3910:31:39compile:
10:31:39no-op
10:31:3910:31:39package:
10:31:39Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
10:31:3910:31:39install:
10:31:39:: delivering :: omero#omero_client;working@121c5c9aa309 :: 5.6.3-484-22ee6d815f-ice36 :: integration :: Tue Jul 23 10:31:06 UTC 2024
10:31:39 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
10:31:39:: publishing :: omero#omero_client
10:31:39 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-484-22ee6d815f-ice36/omero_client-5.6.3-484-22ee6d815f-ice36.jar
10:31:39 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-484-22ee6d815f-ice36/omero_client-5.6.3-484-22ee6d815f-ice36.xml
10:31:40Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
10:31:40Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
10:31:4010:31:40retrieve:
10:31:40:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
10:31:40:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
10:31:40Entering /home/omero/workspace/OMERO-build/src/components/tools...
10:31:4010:31:40dist:
10:31:40Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
10:31:40Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
10:31:40Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
10:31:40Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.8.3.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
10:31:42Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
10:31:42Copying 28 files to /home/omero/workspace/OMERO-build/src/dist
10:31:42Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
10:31:42Entering /home/omero/workspace/OMERO-build/src/components/tests...
10:31:42Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
10:31:4210:31:42copy-licenses:
10:31:42Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
10:31:42Created dir: /home/omero/workspace/OMERO-build/src/dist/share
10:31:42Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
10:31:4210:31:42copy-history:
10:31:42Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
10:31:4210:31:42copy-etc:
10:31:42Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
10:31:42Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
10:31:4210:31:42copy-sql:
10:31:42Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
10:31:5310:31:53copy-server:
10:31:53 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
10:31:5310:31:53copy-client:
10:31:53Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
10:31:55 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
10:31:5510:31:55update-version:
10:31:55Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
10:31:5510:31:55create-workdirs:
10:31:55Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
10:31:55Created dir: /home/omero/workspace/OMERO-build/src/dist/var
10:31:5510:31:55copy-luts:
10:31:55Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
10:31:55Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
10:31:5510:31:55test-compile:
10:31:55:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
10:31:55Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
10:31:55Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
10:31:55Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
10:31:55Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
10:31:55Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
10:31:55Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
10:31:55Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
10:31:5610:31:56testng-init:
10:31:56:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
10:31:56:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
10:32:0410:32:04,449 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
10:32:0410:32:04,452 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7bde45d8 - No custom configurators were discovered as a service.
10:32:0410:32:04,452 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7bde45d8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
10:32:0410:32:04,456 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7bde45d8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
10:32:0410:32:04,457 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
10:32:0410:32:04,457 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
10:32:0410:32:04,458 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7bde45d8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
10:32:0410:32:04,458 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7bde45d8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
10:32:0410:32:04,460 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7bde45d8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
10:32:0410:32:04,460 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
10:32:0410:32:04,461 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
10:32:0410:32:04,462 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@2054183c - Resource [logback.xml] occurs multiple times on the classpath.
10:32:0410:32:04,462 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@2054183c - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
10:32:0410:32:04,462 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@2054183c - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
10:32:0410:32:04,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
10:32:0410:32:04,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
10:32:0410:32:04,795 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
10:32:0410:32:04,798 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@bdc7a96 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
10:32:0410:32:04,798 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@bdc7a96 - Please move "immediateFlush" property into the enclosing appender.
10:32:0410:32:04,884 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@bdc7a96 - Setting the "immediateFlush" property of the enclosing appender to true
10:32:0410:32:04,885 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
10:32:0410:32:04,885 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
10:32:0410:32:04,885 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
10:32:0410:32:04,885 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
10:32:0410:32:04,885 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
10:32:0410:32:04,885 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
10:32:0410:32:04,887 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@4be980 - End of configuration.
10:32:0410:32:04,890 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@9b29cd4 - Registering current configuration as safe fallback point
10:32:0410:32:04,890 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7bde45d8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 430 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
10:32:0410:32:04lifecycle.test-compile:
10:32:04Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
10:32:04Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
10:32:05warning: [options] bootstrap class path not set in conjunction with -source 8
10:32:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:32:07import omero.grid.RawAccessRequest;
10:32:07 ^
10:32:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:32:07import omero.grid.RawAccessRequest;
10:32:07 ^
10:32:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:32:07import omero.grid.RawAccessRequest;
10:32:07 ^
10:32:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
10:32:07import omero.model.ImportJob;
10:32:07 ^
10:32:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
10:32:07import omero.model.ImportJobI;
10:32:07 ^
10:32:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
10:32:09 IObject link = (IObject) linkClass.newInstance();
10:32:09 ^
10:32:09 where T is a type-variable:
10:32:09 T extends Object declared in class Class
10:32:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
10:32:09 T copy = (T) obj.getClass().newInstance();
10:32:09 ^
10:32:09 where T is a type-variable:
10:32:09 T extends Object declared in class Class
10:32:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:32:09 RawAccessRequest raw = new RawAccessRequest();
10:32:09 ^
10:32:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:32:09 RawAccessRequest raw = new RawAccessRequest();
10:32:09 ^
10:32:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
10:32:09 raw.repoUuid = legacy.root().getHash().getValue();
10:32:09 ^
10:32:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
10:32:09 raw.command = "rm";
10:32:09 ^
10:32:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
10:32:09 raw.args = Arrays.asList(path);
10:32:09 ^
10:32:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
10:32:10 final IObject link = linkClass.newInstance();
10:32:10 ^
10:32:10 where T is a type-variable:
10:32:10 T extends Object declared in class Class
10:32:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
10:32:10 originalLink.setChild(annotationClass.newInstance());
10:32:10 ^
10:32:10 where T is a type-variable:
10:32:10 T extends Object declared in class Class
10:32:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
10:32:11 RoiResult r = svc.findByImage(id, new RoiOptions());
10:32:11 ^
10:32:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:32:11 final RawAccessRequest request = new RawAccessRequest();
10:32:11 ^
10:32:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:32:11 final RawAccessRequest request = new RawAccessRequest();
10:32:11 ^
10:32:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
10:32:11 request.repoUuid = repo.root().getHash().getValue();
10:32:11 ^
10:32:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
10:32:11 request.command = "exists";
10:32:11 ^
10:32:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
10:32:11 request.args = Collections.singletonList(dirPath);
10:32:11 ^
10:32:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:32:11 final RawAccessRequest request = new RawAccessRequest();
10:32:11 ^
10:32:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:32:11 final RawAccessRequest request = new RawAccessRequest();
10:32:11 ^
10:32:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
10:32:11 request.repoUuid = repo.root().getHash().getValue();
10:32:11 ^
10:32:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
10:32:11 request.command = "exists";
10:32:11 ^
10:32:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
10:32:11 request.args = Collections.singletonList(dirName);
10:32:11 ^
10:32:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
10:32:11 final ImportJob importJob = new ImportJobI();
10:32:11 ^
10:32:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
10:32:11 final ImportJob importJob = new ImportJobI();
10:32:11 ^
10:32:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
10:32:11 importJob.setImageName(omero.rtypes.rstring(name));
10:32:11 ^
10:32:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
10:32:11 importJob.setImageDescription(omero.rtypes.rstring(desc));
10:32:11 ^
10:32:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
10:32:11 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
10:32:11 ^
10:32:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
10:32:11 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
10:32:11 ^
10:32:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
10:32:11 final String savedName = sent.getImageName().getValue().toString();
10:32:11 ^
10:32:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
10:32:11 final String savedDesc = sent.getImageDescription().getValue().toString();
10:32:11 ^
10:32:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
10:32:11 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
10:32:11 ^
10:32:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
10:32:11 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
10:32:11 ^
10:32:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
10:32:11 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
10:32:11 ^
10:32:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
10:32:11 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
10:32:11 ^
10:32:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
10:32:12 RoiResult r = svc.findByImage(image.getId().getValue(),
10:32:12 ^
10:32:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:32:12 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
10:32:12 ^
10:32:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:32:12 l = svc.getRoiMeasurements(image.getId().getValue(), options);
10:32:12 ^
10:32:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:32:12 l = svc.getRoiMeasurements(image.getId().getValue(), options);
10:32:12 ^
10:32:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:32:12 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
10:32:12 ^
10:32:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
10:32:12 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
10:32:12 ^
10:32:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:32:12 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
10:32:12 ^
10:32:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
10:32:12 table = svc.getTable(f.getId().getValue());
10:32:12 ^
10:32:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
10:32:12 RoiResult r = svc.findByImage(image.getId().getValue(),
10:32:12 ^
10:32:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
10:32:12 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
10:32:12 ^
10:32:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
10:32:12 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
10:32:12 ^
10:32:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
10:32:12 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
10:32:12 ^
10:32:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
10:32:12 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
10:32:12 ^
10:32:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
10:32:12 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
10:32:12 ^
10:32:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
10:32:12 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
10:32:12 ^
10:32:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
10:32:12 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
10:32:12 ^
10:32:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
10:32:12 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
10:32:12 ^
10:32:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
10:32:12 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
10:32:12 ^
10:32:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
10:32:12 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
10:32:12 ^
10:32:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
10:32:12 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
10:32:12 ^
10:32:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
10:32:12 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
10:32:12 ^
10:32:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
10:32:12 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
10:32:12 ^
10:32:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
10:32:12 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
10:32:12 ^
10:32:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
10:32:12 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
10:32:12 ^
10:32:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
10:32:12 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
10:32:12 ^
10:32:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
10:32:12 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
10:32:12 ^
10:32:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
10:32:12 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
10:32:12 ^
10:32:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
10:32:12 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
10:32:12 ^
10:32:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
10:32:12 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
10:32:12 ^
10:32:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
10:32:12 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
10:32:12 ^
10:32:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
10:32:12 svc.getShapeStatsRestricted(
10:32:12 ^
10:32:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
10:32:12 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
10:32:12 ^
10:32:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
10:32:12 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
10:32:12 ^
10:32:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
10:32:13 request.typesToIgnore = Collections.singletonList("TagAnnotation");
10:32:13 ^
10:32:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
10:32:13 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
10:32:13 ^
10:32:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
10:32:13 request.typesToIgnore = Collections.singletonList("Annotation");
10:32:13 ^
10:32:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
10:32:13 request.typesToIgnore = Collections.singletonList("Annotation");
10:32:13 ^
10:32:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
10:32:13 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
10:32:13 ^
10:32:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
10:32:13 p2.setRelatedTo(p1);
10:32:13 ^
10:32:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
10:32:13 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
10:32:13 ^
10:32:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
10:32:13 pixels1.setRelatedTo(pixels2);
10:32:13 ^
10:32:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
10:32:13 Pixels pixels = pixels1.getRelatedTo();
10:32:13 ^
10:32:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
10:32:13 Assert.assertNull(pixels1.getRelatedTo());
10:32:13 ^
10:32:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
10:32:13 pixels1.setRelatedTo(pixels2);
10:32:13 ^
10:32:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
10:32:13 Pixels pixels = pixels1.getRelatedTo();
10:32:13 ^
10:32:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
10:32:13 Assert.assertNull(pixels1.getRelatedTo());
10:32:13 ^
10:32:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:32:13 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
10:32:13 ^
10:32:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:32:13 l = svc.getRoiMeasurements(image.getId().getValue(), options);
10:32:13 ^
10:32:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:32:13 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
10:32:13 ^
10:32:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:32:13 l = svc.getRoiMeasurements(image.getId().getValue(), options);
10:32:13 ^
10:32:13Note: Some input files use unchecked or unsafe operations.
10:32:13Note: Recompile with -Xlint:unchecked for details.
10:32:1388 warnings
10:32:13Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_94380732.tmp
10:32:13Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
10:32:13:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
10:32:13:: delivering :: omero#OmeroJava-test;working@121c5c9aa309 :: 5.6.3-484-22ee6d815f-ice36 :: integration :: Tue Jul 23 10:31:55 UTC 2024
10:32:13 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
10:32:13:: publishing :: omero#OmeroJava-test
10:32:13 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-484-22ee6d815f-ice36.jar
10:32:13 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-484-22ee6d815f-ice36.xml
10:32:1310:32:13build-eclipse:
10:32:13No sub-builds to iterate on
10:32:13Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
10:32:1310:32:13retrieve:
10:32:13:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
10:32:13:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
10:32:1710:32:17prepare:
10:32:17Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
10:32:1910:32:19release-clients:
10:32:19Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-484-22ee6d815f-ice36.zip
10:32:2510:32:25release-zip:
10:32:25Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-484-22ee6d815f-ice36.zip
10:32:3810:32:38BUILD SUCCESSFUL
10:32:38Total time: 1 minute 36 seconds
10:32:38++ '[' -d .git ']'
10:32:38++ python3 ./build.py release-src
10:32:38OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
10:32:38Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
10:32:3910:32:39release-src-git:
10:32:39Releasing openmicroscopy-5.6.3-484-22ee6d815f-ice36
10:32:41 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-484-22ee6d815f-ice36.zip
10:32:41 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-484-22ee6d815f-ice36-base.zip
10:32:4210:32:42BUILD SUCCESSFUL
10:32:42Total time: 3 seconds
10:32:42++ echo BUILD_NUMBER=125
10:32:42++ echo OMERO_BRANCH=merge_ci
10:32:42++ git_info
10:32:42+++ git rev-parse HEAD
10:32:42++ HEAD=22ee6d815f3c2976ba4087d5a7989de1b6929e43
10:32:42++ git log --max-count=1 22ee6d815f3c2976ba4087d5a7989de1b6929e43
10:32:42++ env
10:32:42++ sort
10:32:42Archiving artifacts
10:33:13Finished: SUCCESS
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