00:40:01Started by upstream project "Trigger" build number 2900:40:01originally caused by:
00:40:01 Started by timer
00:40:01Running as SYSTEM
00:40:01Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
00:40:01The recommended git tool is: NONE
00:40:01No credentials specified
00:40:01 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
00:40:01Fetching changes from the remote Git repository
00:40:01 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
00:40:01Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git00:40:01 > git --version # timeout=10
00:40:01 > git --version # 'git version 2.39.3'
00:40:01 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
00:40:07 > git rev-parse origin/merge_ci^{commit} # timeout=10
00:40:07Checking out Revision b04fc86a0a903b3231907caa51621cda3f2a1ea9 (origin/merge_ci)
00:40:07 > git config core.sparsecheckout # timeout=10
00:40:07 > git checkout -f b04fc86a0a903b3231907caa51621cda3f2a1ea9 # timeout=10
00:40:07Commit message: "Add version.properties to etc/omero.properties"
00:40:07 > git rev-list --no-walk 68c7620650d5f897edefb3e0a644d1bb9e02b469 # timeout=10
00:40:07Cleaning workspace
00:40:07 > git rev-parse --verify HEAD # timeout=10
00:40:07Resetting working tree
00:40:07 > git reset --hard # timeout=10
00:40:07 > git clean -fdx # timeout=10
00:40:09Copied 6 artifacts from "OMERO-python-superbuild-build" build number 2500:40:09[OMERO-build] $ /bin/bash -xe /tmp/jenkins978368218072244599.sh
00:40:09+ mv omero-scripts/dist/omero-scripts-5.8.1.dev0.tar.gz .
00:40:09+ cd src
00:40:09+ export OMERO_BRANCH=merge_ci
00:40:09+ OMERO_BRANCH=merge_ci
00:40:09+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
00:40:09+ source /home/omero/settings.env
00:40:09++ OMERO_DB_HOST=pg
00:40:09++ OMERO_DB_USER=postgres
00:40:09++ OMERO_DB_PASS=
00:40:09++ OMERO_ROOT_PASS=omero
00:40:09++ OMERO_DATA_DIR=/OMERO
00:40:09++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:40:09+ python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
00:40:13+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl00:40:15Collecting zeroc-ice==3.6.5
00:40:15 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
00:40:18WARNING: You are using pip version 21.2.3; however, version 24.0 is available.
00:40:18You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
00:40:19+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py
00:40:19Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (69.2.0)
00:40:20Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.1)
00:40:20Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4)
00:40:20Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5)
00:40:20Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0)
00:40:20Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0)
00:40:20Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2)
00:40:20Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0)
00:40:20Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18)
00:40:20Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1)
00:40:20Requirement already satisfied: numpy in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4)
00:40:20Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2)
00:40:20Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2)
00:40:20Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6)
00:40:20WARNING: You are using pip version 21.2.3; however, version 24.0 is available.
00:40:20You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
00:40:20+ source docs/hudson/OMERO.sh
00:40:20++ set -e
00:40:20++ set -u
00:40:20++ set -x
00:40:20++ source docs/hudson/functions.sh
00:40:20++ echo Building merge_ci
00:40:20Building merge_ci
00:40:20++ python3 ./build.py build-dev release-all
00:40:21OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
00:40:22Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:40:2300:40:23check-ivy:
00:40:23Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
00:40:23Created dir: /home/omero/workspace/OMERO-build/src/target
00:40:25:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:40:25:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:2600:40:26build-scons:
00:40:26Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:40:26No sub-builds to iterate on
00:40:26Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:40:2600:40:26buildlist:
00:40:26:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:40:26:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:2700:40:27clean:
00:40:27Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:40:27Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:40:2700:40:27python-clean:
00:40:27WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:40:27/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-451-b04fc86a0a-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:40:27 warnings.warn(
00:40:27running clean
00:40:27Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
00:40:27Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:40:2700:40:27python-clean:
00:40:27WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:40:27/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-451-b04fc86a0a-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:40:27 warnings.warn(
00:40:27running clean
00:40:27Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
00:40:28Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:40:28Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:40:28Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:40:2800:40:28python-clean:
00:40:28WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:40:28/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-451-b04fc86a0a-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:40:28 warnings.warn(
00:40:28running clean
00:40:28Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
00:40:28Deleting directory /home/omero/workspace/OMERO-build/src/target
00:40:2800:40:28build-scons:
00:40:28Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:40:2800:40:28build:
00:40:28No sub-builds to iterate on
00:40:28Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:40:28Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:40:28Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:40:28Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:40:2800:40:28tools-init:
00:40:28no-op
00:40:2800:40:28retrieve:
00:40:28:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:40:29:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:30WARNING: An illegal reflective access operation has occurred
00:40:30WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
00:40:30WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
00:40:30WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
00:40:30WARNING: All illegal access operations will be denied in a future release
00:41:2500:41:25prepare:
00:41:25Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:41:25Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
00:41:25Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
00:41:25Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:41:25Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:41:25Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:41:25Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
00:41:25Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:41:25Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:41:25Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:41:25Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:41:25Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:41:25Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:41:25Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:41:25Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:41:2500:41:25pre-compile:
00:41:25Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:41:25Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:41:25Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:41:25Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:41:25Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:41:2500:41:25compile:
00:41:25no-op
00:41:2500:41:25package:
00:41:25Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
00:41:2600:41:26install:
00:41:26:: delivering :: omero#omero_client;working@aa84d84ce982 :: 5.6.3-451-b04fc86a0a-ice36 :: integration :: Sun Apr 07 00:40:28 UTC 2024
00:41:26 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
00:41:26:: publishing :: omero#omero_client
00:41:26 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-451-b04fc86a0a-ice36/omero_client-5.6.3-451-b04fc86a0a-ice36.jar
00:41:26 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-451-b04fc86a0a-ice36/omero_client-5.6.3-451-b04fc86a0a-ice36.xml
00:41:26Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:41:26Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:41:2600:41:26retrieve:
00:41:26:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:41:26:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:41:26Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:41:2600:41:26dist:
00:41:26Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
00:41:26Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
00:41:26Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:41:27Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero-scripts-5.8.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:41:27Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
00:41:27Copying 28 files to /home/omero/workspace/OMERO-build/src/dist
00:41:27Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
00:41:27Entering /home/omero/workspace/OMERO-build/src/components/tests...
00:41:27Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:41:2700:41:27copy-licenses:
00:41:27Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:41:27Created dir: /home/omero/workspace/OMERO-build/src/dist/share
00:41:27Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
00:41:2700:41:27copy-history:
00:41:27Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:41:2700:41:27copy-etc:
00:41:27Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
00:41:28Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
00:41:2800:41:28copy-sql:
00:41:28Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
00:41:4400:41:44copy-server:
00:41:44 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
00:41:4400:41:44copy-client:
00:41:44Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
00:41:45 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
00:41:4500:41:45update-version:
00:41:45Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
00:41:4500:41:45create-workdirs:
00:41:45Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
00:41:45Created dir: /home/omero/workspace/OMERO-build/src/dist/var
00:41:4500:41:45copy-luts:
00:41:45Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:41:45Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:41:4600:41:46test-compile:
00:41:46:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:41:46Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:41:46Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:41:46Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:41:46Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:41:46Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:41:46Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:41:46Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:41:4600:41:46testng-init:
00:41:46:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:41:46:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:41:5100:41:50,654 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
00:41:5100:41:50,657 |-INFO in ch.qos.logback.classic.util.ContextInitializer@54c78734 - No custom configurators were discovered as a service.
00:41:5100:41:50,657 |-INFO in ch.qos.logback.classic.util.ContextInitializer@54c78734 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
00:41:5100:41:50,661 |-INFO in ch.qos.logback.classic.util.ContextInitializer@54c78734 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
00:41:5100:41:50,662 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
00:41:5100:41:50,662 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
00:41:5100:41:50,663 |-INFO in ch.qos.logback.classic.util.ContextInitializer@54c78734 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
00:41:5100:41:50,663 |-INFO in ch.qos.logback.classic.util.ContextInitializer@54c78734 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
00:41:5100:41:50,665 |-INFO in ch.qos.logback.classic.util.ContextInitializer@54c78734 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
00:41:5100:41:50,666 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
00:41:5100:41:50,666 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:41:5100:41:50,667 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7cfe97db - Resource [logback.xml] occurs multiple times on the classpath.
00:41:5100:41:50,667 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7cfe97db - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:41:5100:41:50,667 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7cfe97db - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
00:41:5100:41:50,964 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
00:41:5100:41:50,964 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
00:41:5100:41:50,986 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
00:41:5100:41:50,988 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@664bd35e - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
00:41:5100:41:50,988 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@664bd35e - Please move "immediateFlush" property into the enclosing appender.
00:41:5100:41:51,062 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@664bd35e - Setting the "immediateFlush" property of the enclosing appender to true
00:41:5100:41:51,064 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
00:41:5100:41:51,064 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
00:41:5100:41:51,064 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
00:41:5100:41:51,064 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
00:41:5100:41:51,064 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
00:41:5100:41:51,064 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
00:41:5100:41:51,065 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@33ce766b - End of configuration.
00:41:5100:41:51,068 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5bd8b901 - Registering current configuration as safe fallback point
00:41:5100:41:51,068 |-INFO in ch.qos.logback.classic.util.ContextInitializer@54c78734 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 403 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
00:41:5100:41:51lifecycle.test-compile:
00:41:51Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:41:51Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:41:52warning: [options] bootstrap class path not set in conjunction with -source 8
00:41:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:55import omero.grid.RawAccessRequest;
00:41:55 ^
00:41:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:55import omero.grid.RawAccessRequest;
00:41:55 ^
00:41:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:56import omero.grid.RawAccessRequest;
00:41:56 ^
00:41:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
00:41:56import omero.model.ImportJob;
00:41:56 ^
00:41:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:41:56import omero.model.ImportJobI;
00:41:56 ^
00:41:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
00:41:57 IObject link = (IObject) linkClass.newInstance();
00:41:57 ^
00:41:57 where T is a type-variable:
00:41:57 T extends Object declared in class Class
00:41:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
00:41:57 T copy = (T) obj.getClass().newInstance();
00:41:57 ^
00:41:57 where T is a type-variable:
00:41:57 T extends Object declared in class Class
00:41:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:57 RawAccessRequest raw = new RawAccessRequest();
00:41:57 ^
00:41:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:57 RawAccessRequest raw = new RawAccessRequest();
00:41:57 ^
00:41:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:41:57 raw.repoUuid = legacy.root().getHash().getValue();
00:41:57 ^
00:41:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
00:41:57 raw.command = "rm";
00:41:57 ^
00:41:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
00:41:57 raw.args = Arrays.asList(path);
00:41:57 ^
00:41:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
00:41:58 final IObject link = linkClass.newInstance();
00:41:58 ^
00:41:58 where T is a type-variable:
00:41:58 T extends Object declared in class Class
00:41:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
00:41:58 originalLink.setChild(annotationClass.newInstance());
00:41:58 ^
00:41:58 where T is a type-variable:
00:41:58 T extends Object declared in class Class
00:41:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:41:58 RoiResult r = svc.findByImage(id, new RoiOptions());
00:41:58 ^
00:41:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:59 final RawAccessRequest request = new RawAccessRequest();
00:41:59 ^
00:41:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:59 final RawAccessRequest request = new RawAccessRequest();
00:41:59 ^
00:41:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:41:59 request.repoUuid = repo.root().getHash().getValue();
00:41:59 ^
00:41:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
00:41:59 request.command = "exists";
00:41:59 ^
00:41:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
00:41:59 request.args = Collections.singletonList(dirPath);
00:41:59 ^
00:41:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:59 final RawAccessRequest request = new RawAccessRequest();
00:41:59 ^
00:41:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:59 final RawAccessRequest request = new RawAccessRequest();
00:41:59 ^
00:41:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:41:59 request.repoUuid = repo.root().getHash().getValue();
00:41:59 ^
00:41:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
00:41:59 request.command = "exists";
00:41:59 ^
00:41:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
00:41:59 request.args = Collections.singletonList(dirName);
00:41:59 ^
00:41:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
00:41:59 final ImportJob importJob = new ImportJobI();
00:41:59 ^
00:41:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:41:59 final ImportJob importJob = new ImportJobI();
00:41:59 ^
00:41:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
00:41:59 importJob.setImageName(omero.rtypes.rstring(name));
00:41:59 ^
00:41:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
00:41:59 importJob.setImageDescription(omero.rtypes.rstring(desc));
00:41:59 ^
00:41:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:41:59 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:41:59 ^
00:41:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:41:59 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:41:59 ^
00:41:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:41:59 final String savedName = sent.getImageName().getValue().toString();
00:41:59 ^
00:41:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:41:59 final String savedDesc = sent.getImageDescription().getValue().toString();
00:41:59 ^
00:41:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:41:59 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:41:59 ^
00:41:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:41:59 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:41:59 ^
00:41:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:41:59 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
00:41:59 ^
00:41:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:41:59 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
00:41:59 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:42:00 RoiResult r = svc.findByImage(image.getId().getValue(),
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:42:00 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:42:00 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:42:00 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:42:00 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
00:42:00 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:42:00 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
00:42:00 table = svc.getTable(f.getId().getValue());
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:42:00 RoiResult r = svc.findByImage(image.getId().getValue(),
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:42:00 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:42:00 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:42:00 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:42:00 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:42:00 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:42:00 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:42:00 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:42:00 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
00:42:00 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:42:00 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:42:00 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:42:00 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:42:00 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:42:00 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:42:00 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:42:00 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:42:00 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:42:00 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:42:00 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:42:00 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:42:00 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:42:00 svc.getShapeStatsRestricted(
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:42:00 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:42:00 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:42:00 request.typesToIgnore = Collections.singletonList("TagAnnotation");
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:42:00 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:42:00 request.typesToIgnore = Collections.singletonList("Annotation");
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:42:00 request.typesToIgnore = Collections.singletonList("Annotation");
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:42:00 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:42:00 p2.setRelatedTo(p1);
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:42:00 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:42:00 pixels1.setRelatedTo(pixels2);
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:42:00 Pixels pixels = pixels1.getRelatedTo();
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:42:00 Assert.assertNull(pixels1.getRelatedTo());
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:42:00 pixels1.setRelatedTo(pixels2);
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:42:00 Pixels pixels = pixels1.getRelatedTo();
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:42:00 Assert.assertNull(pixels1.getRelatedTo());
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:42:00 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:42:00 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:42:00 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:42:00 ^
00:42:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:42:00 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:42:00 ^
00:42:01Note: Some input files use unchecked or unsafe operations.
00:42:01Note: Recompile with -Xlint:unchecked for details.
00:42:0188 warnings
00:42:01Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_2078061840.tmp
00:42:01Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
00:42:01:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:42:01:: delivering :: omero#OmeroJava-test;working@aa84d84ce982 :: 5.6.3-451-b04fc86a0a-ice36 :: integration :: Sun Apr 07 00:41:46 UTC 2024
00:42:01 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
00:42:01:: publishing :: omero#OmeroJava-test
00:42:01 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-451-b04fc86a0a-ice36.jar
00:42:01 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-451-b04fc86a0a-ice36.xml
00:42:0100:42:01build-eclipse:
00:42:01No sub-builds to iterate on
00:42:01Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:42:0100:42:01retrieve:
00:42:01:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:42:01:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:42:0500:42:05prepare:
00:42:05Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:42:0600:42:06release-clients:
00:42:06Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-451-b04fc86a0a-ice36.zip
00:42:1200:42:12release-zip:
00:42:12Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-451-b04fc86a0a-ice36.zip
00:42:2400:42:24BUILD SUCCESSFUL
00:42:24Total time: 2 minutes 2 seconds
00:42:24++ '[' -d .git ']'
00:42:24++ python3 ./build.py release-src
00:42:25OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
00:42:25Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:42:2600:42:26release-src-git:
00:42:26Releasing openmicroscopy-5.6.3-451-b04fc86a0a-ice36
00:42:28 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-451-b04fc86a0a-ice36.zip
00:42:28 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-451-b04fc86a0a-ice36-base.zip
00:42:2900:42:29BUILD SUCCESSFUL
00:42:29Total time: 4 seconds
00:42:29++ echo BUILD_NUMBER=25
00:42:29++ echo OMERO_BRANCH=merge_ci
00:42:29++ git_info
00:42:29+++ git rev-parse HEAD
00:42:29++ HEAD=b04fc86a0a903b3231907caa51621cda3f2a1ea9
00:42:29++ git log --max-count=1 b04fc86a0a903b3231907caa51621cda3f2a1ea9
00:42:29++ env
00:42:29++ sort
00:42:30Archiving artifacts
00:42:58Finished: SUCCESS
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