13:20:39Started by upstream project "Trigger" build number 46813:20:39originally caused by:
13:20:39 Started by user devspace13:20:39Running as SYSTEM
13:20:40Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
13:20:40The recommended git tool is: NONE
13:20:40No credentials specified
13:20:40 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
13:20:40Fetching changes from the remote Git repository
13:20:40 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
13:20:40Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git13:20:40 > git --version # timeout=10
13:20:40 > git --version # 'git version 2.43.5'
13:20:40 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
13:20:43 > git rev-parse origin/merge_ci^{commit} # timeout=10
13:20:43Checking out Revision 7c47519573a1417d072c4dcd8454f3b33e9343fb (origin/merge_ci)
13:20:43 > git config core.sparsecheckout # timeout=10
13:20:43 > git checkout -f 7c47519573a1417d072c4dcd8454f3b33e9343fb # timeout=10
13:20:43Commit message: "Add version.properties to etc/omero.properties"
13:20:43 > git rev-list --no-walk 09a99dcf825c579bbe0540abbc09eaccf63d1eb5 # timeout=10
13:20:43Cleaning workspace
13:20:43 > git rev-parse --verify HEAD # timeout=10
13:20:43Resetting working tree
13:20:43 > git reset --hard # timeout=10
13:20:43 > git clean -fdx # timeout=10
13:20:43Copied 6 artifacts from "OMERO-python-superbuild-build" build number 39613:20:43[OMERO-build] $ /bin/bash -xe /tmp/jenkins1596747835685718598.sh
13:20:43+ mv omero-scripts/dist/omero_scripts-5.9.1.dev0.tar.gz .
13:20:43+ cd src
13:20:43+ export OMERO_BRANCH=merge_ci
13:20:43+ OMERO_BRANCH=merge_ci
13:20:43+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
13:20:43+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
13:20:43+ source /home/omero/settings.env
13:20:44++ OMERO_DB_HOST=pg
13:20:44++ OMERO_DB_USER=postgres
13:20:44++ OMERO_DB_PASS=
13:20:44++ OMERO_ROOT_PASS=omero
13:20:44++ OMERO_DATA_DIR=/OMERO
13:20:44++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
13:20:44+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
13:20:48+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl13:20:48Collecting zeroc-ice==3.6.5
13:20:49 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
13:20:51 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 19.0 MB/s eta 0:00:00
13:20:51Installing collected packages: zeroc-ice
13:20:52Successfully installed zeroc-ice-3.6.5
13:20:5213:20:52[notice] A new release of pip available: 22.3.1 -> 25.1.1
13:20:52[notice] To update, run: python3.11 -m pip install --upgrade pip
13:20:52+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
13:20:52Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
13:20:53Collecting setuptools<66
13:20:53 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
13:20:53Collecting omero-py
13:20:53 Using cached omero_py-5.20.0-py3-none-any.whl (2.8 MB)
13:20:53Collecting urllib3<2
13:20:53 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
13:20:53Collecting appdirs
13:20:53 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
13:20:53Collecting future
13:20:53 Using cached future-1.0.0-py3-none-any.whl (491 kB)
13:20:54Collecting numpy<3
13:20:54 Using cached numpy-2.2.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (16.4 MB)
13:20:55Collecting Pillow>=10.0.0
13:20:55 Using cached pillow-11.2.1-cp311-cp311-manylinux_2_28_x86_64.whl (4.6 MB)
13:20:55Collecting PyYAML
13:20:55 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB)
13:20:55Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
13:20:55Collecting requests
13:20:55 Using cached requests-2.32.3-py3-none-any.whl (64 kB)
13:20:55Collecting portalocker
13:20:55 Using cached portalocker-3.1.1-py3-none-any.whl (19 kB)
13:20:55Collecting charset-normalizer<4,>=2
13:20:55 Using cached charset_normalizer-3.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (147 kB)
13:20:55Collecting idna<4,>=2.5
13:20:56 Using cached idna-3.10-py3-none-any.whl (70 kB)
13:20:56Collecting certifi>=2017.4.17
13:20:56 Using cached certifi-2025.4.26-py3-none-any.whl (159 kB)
13:20:56Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset-normalizer, certifi, requests, omero-py
13:20:56 Attempting uninstall: setuptools
13:20:56 Found existing installation: setuptools 65.5.1
13:20:56 Uninstalling setuptools-65.5.1:
13:20:56 Successfully uninstalled setuptools-65.5.1
13:21:01Successfully installed Pillow-11.2.1 PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.4.26 charset-normalizer-3.4.2 future-1.0.0 idna-3.10 numpy-2.2.5 omero-py-5.20.0 portalocker-3.1.1 requests-2.32.3 setuptools-65.7.0 urllib3-1.26.20
13:21:0113:21:01[notice] A new release of pip available: 22.3.1 -> 25.1.1
13:21:01[notice] To update, run: python3.11 -m pip install --upgrade pip
13:21:02+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
13:21:02++ deactivate nondestructive
13:21:02++ '[' -n '' ']'
13:21:02++ '[' -n '' ']'
13:21:02++ hash -r
13:21:02++ '[' -n '' ']'
13:21:02++ unset VIRTUAL_ENV
13:21:02++ unset VIRTUAL_ENV_PROMPT
13:21:02++ '[' '!' nondestructive = nondestructive ']'
13:21:02++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
13:21:02++ export VIRTUAL_ENV
13:21:02++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
13:21:02++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
13:21:02++ export PATH
13:21:02++ '[' -n '' ']'
13:21:02++ '[' -z '' ']'
13:21:02++ _OLD_VIRTUAL_PS1=
13:21:02++ PS1='(omero-virtualenv) '
13:21:02++ export PS1
13:21:02++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
13:21:02++ export VIRTUAL_ENV_PROMPT
13:21:02++ hash -r
13:21:02+ source docs/hudson/OMERO.sh
13:21:02++ set -e
13:21:02++ set -u
13:21:02++ set -x
13:21:02++ source docs/hudson/functions.sh
13:21:02++ echo Building merge_ci
13:21:02Building merge_ci
13:21:02++ python3 ./build.py build-dev release-all
13:21:02Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
13:21:0313:21:03check-ivy:
13:21:03Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
13:21:03Created dir: /home/omero/workspace/OMERO-build/src/target
13:21:05:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
13:21:05:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:21:0513:21:05build-scons:
13:21:05Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
13:21:06No sub-builds to iterate on
13:21:06Entering /home/omero/workspace/OMERO-build/src/components/tools...
13:21:0713:21:07buildlist:
13:21:07:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
13:21:07:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:21:0713:21:07clean:
13:21:07Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
13:21:07Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
13:21:0713:21:07python-clean:
13:21:07WARNING: '' not a valid package name; please use only .-separated package names in setup.py
13:21:07/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-7c47519573-ice36-b404') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
13:21:07 warnings.warn(
13:21:07running clean
13:21:07Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
13:21:07Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
13:21:0813:21:08python-clean:
13:21:08WARNING: '' not a valid package name; please use only .-separated package names in setup.py
13:21:08/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-7c47519573-ice36-b404') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
13:21:08 warnings.warn(
13:21:08running clean
13:21:08Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
13:21:08Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
13:21:08Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
13:21:08Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
13:21:0813:21:08python-clean:
13:21:08WARNING: '' not a valid package name; please use only .-separated package names in setup.py
13:21:08/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-7c47519573-ice36-b404') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
13:21:08 warnings.warn(
13:21:08running clean
13:21:08Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
13:21:08Deleting directory /home/omero/workspace/OMERO-build/src/target
13:21:0813:21:08build-scons:
13:21:08Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
13:21:0813:21:08build:
13:21:08No sub-builds to iterate on
13:21:08Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
13:21:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
13:21:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
13:21:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
13:21:0913:21:09tools-init:
13:21:09no-op
13:21:0913:21:09retrieve:
13:21:09:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
13:21:09:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:21:09WARNING: An illegal reflective access operation has occurred
13:21:09WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
13:21:09WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
13:21:09WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
13:21:09WARNING: All illegal access operations will be denied in a future release
13:21:4813:21:48prepare:
13:21:48Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
13:21:48Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
13:21:48Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
13:21:48Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
13:21:48Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
13:21:48Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
13:21:48Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
13:21:48Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
13:21:48Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
13:21:48Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
13:21:48Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
13:21:48Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
13:21:48Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
13:21:48Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
13:21:48Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
13:21:4813:21:48pre-compile:
13:21:48Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
13:21:48Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
13:21:49Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
13:21:49Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
13:21:49Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
13:21:4913:21:49compile:
13:21:49no-op
13:21:4913:21:49package:
13:21:49Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
13:21:5013:21:50install:
13:21:50:: delivering :: omero#omero_client;working@db631b687d0c :: 5.6.3-552-7c47519573-ice36-b404 :: integration :: Thu May 08 13:21:09 UTC 2025
13:21:50 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
13:21:50:: publishing :: omero#omero_client
13:21:50 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-552-7c47519573-ice36-b404/omero_client-5.6.3-552-7c47519573-ice36-b404.jar
13:21:50 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-552-7c47519573-ice36-b404/omero_client-5.6.3-552-7c47519573-ice36-b404.xml
13:21:50Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
13:21:50Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
13:21:5013:21:50retrieve:
13:21:50:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
13:21:50:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:21:50Entering /home/omero/workspace/OMERO-build/src/components/tools...
13:21:5013:21:50dist:
13:21:50Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
13:21:50Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
13:21:50Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
13:21:50Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
13:21:50Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
13:21:50Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
13:21:50Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
13:21:50Entering /home/omero/workspace/OMERO-build/src/components/tests...
13:21:51Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
13:21:5113:21:51copy-licenses:
13:21:51Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
13:21:51Created dir: /home/omero/workspace/OMERO-build/src/dist/share
13:21:51Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
13:21:5213:21:52copy-history:
13:21:52Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
13:21:5213:21:52copy-etc:
13:21:52Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
13:21:52Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
13:21:5213:21:52copy-sql:
13:21:52Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
13:22:0213:22:02copy-server:
13:22:02 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
13:22:0213:22:02copy-client:
13:22:02Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
13:22:03 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
13:22:0313:22:03update-version:
13:22:03Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
13:22:0313:22:03create-workdirs:
13:22:03Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
13:22:03Created dir: /home/omero/workspace/OMERO-build/src/dist/var
13:22:0313:22:03copy-luts:
13:22:03Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
13:22:03Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
13:22:0413:22:04test-compile:
13:22:04:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:22:04Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
13:22:04Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
13:22:04Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
13:22:04Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
13:22:04Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
13:22:04Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
13:22:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
13:22:0513:22:05testng-init:
13:22:05:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
13:22:05:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:22:0913:22:08,861 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
13:22:0913:22:08,864 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6026c754 - No custom configurators were discovered as a service.
13:22:0913:22:08,864 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6026c754 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
13:22:0913:22:08,867 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6026c754 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
13:22:0913:22:08,868 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
13:22:0913:22:08,868 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
13:22:0913:22:08,869 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6026c754 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
13:22:0913:22:08,869 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6026c754 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
13:22:0913:22:08,870 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6026c754 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
13:22:0913:22:08,871 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
13:22:0913:22:08,871 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
13:22:0913:22:08,872 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@3d7c21b7 - Resource [logback.xml] occurs multiple times on the classpath.
13:22:0913:22:08,872 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@3d7c21b7 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
13:22:0913:22:08,872 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@3d7c21b7 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
13:22:0913:22:09,069 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
13:22:0913:22:09,069 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
13:22:0913:22:09,087 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
13:22:0913:22:09,089 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@11f8bff1 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
13:22:0913:22:09,089 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@11f8bff1 - Please move "immediateFlush" property into the enclosing appender.
13:22:0913:22:09,149 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@11f8bff1 - Setting the "immediateFlush" property of the enclosing appender to true
13:22:0913:22:09,150 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
13:22:0913:22:09,150 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
13:22:0913:22:09,150 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
13:22:0913:22:09,150 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
13:22:0913:22:09,150 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
13:22:0913:22:09,150 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
13:22:0913:22:09,151 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3fb2306 - End of configuration.
13:22:0913:22:09,153 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5531484a - Registering current configuration as safe fallback point
13:22:0913:22:09,153 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6026c754 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 283 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
13:22:0913:22:09lifecycle.test-compile:
13:22:09Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
13:22:09Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
13:22:09warning: [options] bootstrap class path not set in conjunction with -source 8
13:22:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:22:13import omero.grid.RawAccessRequest;
13:22:13 ^
13:22:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:22:13import omero.grid.RawAccessRequest;
13:22:13 ^
13:22:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:22:13import omero.grid.RawAccessRequest;
13:22:13 ^
13:22:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
13:22:13import omero.model.ImportJob;
13:22:13 ^
13:22:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
13:22:13import omero.model.ImportJobI;
13:22:13 ^
13:22:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
13:22:14 IObject link = (IObject) linkClass.newInstance();
13:22:14 ^
13:22:14 where T is a type-variable:
13:22:14 T extends Object declared in class Class
13:22:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
13:22:14 T copy = (T) obj.getClass().newInstance();
13:22:14 ^
13:22:14 where T is a type-variable:
13:22:14 T extends Object declared in class Class
13:22:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:22:14 RawAccessRequest raw = new RawAccessRequest();
13:22:14 ^
13:22:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:22:14 RawAccessRequest raw = new RawAccessRequest();
13:22:14 ^
13:22:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
13:22:14 raw.repoUuid = legacy.root().getHash().getValue();
13:22:14 ^
13:22:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
13:22:14 raw.command = "rm";
13:22:14 ^
13:22:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
13:22:14 raw.args = Arrays.asList(path);
13:22:14 ^
13:22:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
13:22:14 final IObject link = linkClass.newInstance();
13:22:14 ^
13:22:14 where T is a type-variable:
13:22:14 T extends Object declared in class Class
13:22:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
13:22:15 originalLink.setChild(annotationClass.newInstance());
13:22:15 ^
13:22:15 where T is a type-variable:
13:22:15 T extends Object declared in class Class
13:22:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
13:22:15 RoiResult r = svc.findByImage(id, new RoiOptions());
13:22:15 ^
13:22:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:22:15 final RawAccessRequest request = new RawAccessRequest();
13:22:15 ^
13:22:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:22:15 final RawAccessRequest request = new RawAccessRequest();
13:22:15 ^
13:22:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
13:22:15 request.repoUuid = repo.root().getHash().getValue();
13:22:15 ^
13:22:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
13:22:15 request.command = "exists";
13:22:15 ^
13:22:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
13:22:15 request.args = Collections.singletonList(dirPath);
13:22:15 ^
13:22:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:22:15 final RawAccessRequest request = new RawAccessRequest();
13:22:15 ^
13:22:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
13:22:15 final RawAccessRequest request = new RawAccessRequest();
13:22:15 ^
13:22:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
13:22:15 request.repoUuid = repo.root().getHash().getValue();
13:22:15 ^
13:22:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
13:22:15 request.command = "exists";
13:22:15 ^
13:22:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
13:22:15 request.args = Collections.singletonList(dirName);
13:22:15 ^
13:22:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
13:22:15 final ImportJob importJob = new ImportJobI();
13:22:15 ^
13:22:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
13:22:15 final ImportJob importJob = new ImportJobI();
13:22:15 ^
13:22:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
13:22:15 importJob.setImageName(omero.rtypes.rstring(name));
13:22:15 ^
13:22:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
13:22:15 importJob.setImageDescription(omero.rtypes.rstring(desc));
13:22:15 ^
13:22:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
13:22:15 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
13:22:15 ^
13:22:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
13:22:15 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
13:22:15 ^
13:22:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
13:22:15 final String savedName = sent.getImageName().getValue().toString();
13:22:15 ^
13:22:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
13:22:15 final String savedDesc = sent.getImageDescription().getValue().toString();
13:22:15 ^
13:22:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
13:22:15 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
13:22:15 ^
13:22:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
13:22:15 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
13:22:15 ^
13:22:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
13:22:15 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
13:22:15 ^
13:22:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
13:22:15 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
13:22:15 ^
13:22:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
13:22:16 RoiResult r = svc.findByImage(image.getId().getValue(),
13:22:16 ^
13:22:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:22:16 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
13:22:16 ^
13:22:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:22:16 l = svc.getRoiMeasurements(image.getId().getValue(), options);
13:22:16 ^
13:22:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:22:16 l = svc.getRoiMeasurements(image.getId().getValue(), options);
13:22:16 ^
13:22:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:22:16 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
13:22:16 ^
13:22:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
13:22:16 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
13:22:16 ^
13:22:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:22:16 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
13:22:16 ^
13:22:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
13:22:16 table = svc.getTable(f.getId().getValue());
13:22:16 ^
13:22:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
13:22:16 RoiResult r = svc.findByImage(image.getId().getValue(),
13:22:16 ^
13:22:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
13:22:16 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
13:22:16 ^
13:22:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
13:22:16 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
13:22:16 ^
13:22:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
13:22:16 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
13:22:16 ^
13:22:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
13:22:16 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
13:22:16 ^
13:22:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
13:22:16 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
13:22:16 ^
13:22:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
13:22:16 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
13:22:16 ^
13:22:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
13:22:16 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
13:22:16 ^
13:22:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
13:22:16 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
13:22:16 ^
13:22:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
13:22:16 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
13:22:16 ^
13:22:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
13:22:16 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
13:22:16 ^
13:22:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
13:22:16 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
13:22:16 ^
13:22:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
13:22:16 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
13:22:16 ^
13:22:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
13:22:16 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
13:22:16 ^
13:22:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
13:22:16 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
13:22:16 ^
13:22:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
13:22:16 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
13:22:16 ^
13:22:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
13:22:16 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
13:22:16 ^
13:22:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
13:22:16 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
13:22:16 ^
13:22:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
13:22:16 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
13:22:16 ^
13:22:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
13:22:16 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
13:22:16 ^
13:22:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
13:22:16 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
13:22:16 ^
13:22:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
13:22:16 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
13:22:16 ^
13:22:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
13:22:16 svc.getShapeStatsRestricted(
13:22:16 ^
13:22:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
13:22:16 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
13:22:16 ^
13:22:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
13:22:16 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
13:22:16 ^
13:22:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
13:22:16 request.typesToIgnore = Collections.singletonList("TagAnnotation");
13:22:16 ^
13:22:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
13:22:16 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
13:22:16 ^
13:22:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
13:22:16 request.typesToIgnore = Collections.singletonList("Annotation");
13:22:16 ^
13:22:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
13:22:16 request.typesToIgnore = Collections.singletonList("Annotation");
13:22:16 ^
13:22:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
13:22:16 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
13:22:16 ^
13:22:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
13:22:16 p2.setRelatedTo(p1);
13:22:16 ^
13:22:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
13:22:16 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
13:22:16 ^
13:22:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
13:22:16 pixels1.setRelatedTo(pixels2);
13:22:16 ^
13:22:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
13:22:16 Pixels pixels = pixels1.getRelatedTo();
13:22:16 ^
13:22:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
13:22:16 Assert.assertNull(pixels1.getRelatedTo());
13:22:16 ^
13:22:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
13:22:16 pixels1.setRelatedTo(pixels2);
13:22:16 ^
13:22:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
13:22:16 Pixels pixels = pixels1.getRelatedTo();
13:22:16 ^
13:22:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
13:22:16 Assert.assertNull(pixels1.getRelatedTo());
13:22:16 ^
13:22:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:22:16 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
13:22:16 ^
13:22:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:22:16 l = svc.getRoiMeasurements(image.getId().getValue(), options);
13:22:16 ^
13:22:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:22:16 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
13:22:16 ^
13:22:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
13:22:16 l = svc.getRoiMeasurements(image.getId().getValue(), options);
13:22:16 ^
13:22:16Note: Some input files use unchecked or unsafe operations.
13:22:16Note: Recompile with -Xlint:unchecked for details.
13:22:1688 warnings
13:22:16Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1332792171.tmp
13:22:16Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
13:22:16:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:22:16:: delivering :: omero#OmeroJava-test;working@db631b687d0c :: 5.6.3-552-7c47519573-ice36-b404 :: integration :: Thu May 08 13:22:04 UTC 2025
13:22:16 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
13:22:16:: publishing :: omero#OmeroJava-test
13:22:16 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-552-7c47519573-ice36-b404.jar
13:22:16 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-552-7c47519573-ice36-b404.xml
13:22:1613:22:16build-eclipse:
13:22:16No sub-builds to iterate on
13:22:17Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
13:22:1713:22:17retrieve:
13:22:17:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
13:22:17:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
13:22:1913:22:19prepare:
13:22:19Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
13:22:2013:22:20release-clients:
13:22:20Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-552-7c47519573-ice36-b404.zip
13:22:2713:22:27release-zip:
13:22:27Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-552-7c47519573-ice36-b404.zip
13:22:4013:22:40BUILD SUCCESSFUL
13:22:40Total time: 1 minute 38 seconds
13:22:40++ '[' -d .git ']'
13:22:40++ python3 ./build.py release-src
13:22:40Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
13:22:4113:22:41release-src-git:
13:22:41Releasing openmicroscopy-5.6.3-552-7c47519573-ice36-b404
13:22:43 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-552-7c47519573-ice36-b404.zip
13:22:43 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-552-7c47519573-ice36-b404-base.zip
13:22:4413:22:44BUILD SUCCESSFUL
13:22:44Total time: 3 seconds
13:22:44++ echo BUILD_NUMBER=404
13:22:44++ echo OMERO_BRANCH=merge_ci
13:22:44++ git_info
13:22:44+++ git rev-parse HEAD
13:22:44++ HEAD=7c47519573a1417d072c4dcd8454f3b33e9343fb
13:22:44++ git log --max-count=1 7c47519573a1417d072c4dcd8454f3b33e9343fb
13:22:44++ env
13:22:44++ sort
13:22:44Archiving artifacts
13:23:13Finished: SUCCESS
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