00:56:47Started by upstream project "Trigger" build number 49500:56:47originally caused by:
00:56:47 Started by timer
00:56:47Running as SYSTEM
00:56:47Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
00:56:47The recommended git tool is: NONE
00:56:47No credentials specified
00:56:47 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
00:56:47Fetching changes from the remote Git repository
00:56:47 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
00:56:47Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git00:56:47 > git --version # timeout=10
00:56:47 > git --version # 'git version 2.43.5'
00:56:47 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
00:56:47 > git rev-parse origin/merge_ci^{commit} # timeout=10
00:56:47Checking out Revision 95697a9edb599747d89f2b5e0d8ae7718c594410 (origin/merge_ci)
00:56:47 > git config core.sparsecheckout # timeout=10
00:56:47 > git checkout -f 95697a9edb599747d89f2b5e0d8ae7718c594410 # timeout=10
00:56:47Commit message: "Add version.properties to etc/omero.properties"
00:56:47 > git rev-list --no-walk 77e4da3e316fefa18c13fdc53c1d290db2549725 # timeout=10
00:56:47Cleaning workspace
00:56:47 > git rev-parse --verify HEAD # timeout=10
00:56:47Resetting working tree
00:56:47 > git reset --hard # timeout=10
00:56:47 > git clean -fdx # timeout=10
00:56:48Copied 6 artifacts from "OMERO-python-superbuild-build" build number 41800:56:48[OMERO-build] $ /bin/bash -xe /tmp/jenkins12154972605605749976.sh
00:56:48+ mv omero-scripts/dist/omero_scripts-5.9.1.dev0.tar.gz .
00:56:48+ cd src
00:56:48+ export OMERO_BRANCH=merge_ci
00:56:48+ OMERO_BRANCH=merge_ci
00:56:48+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
00:56:48+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
00:56:48+ source /home/omero/settings.env
00:56:48++ OMERO_DB_HOST=pg
00:56:48++ OMERO_DB_USER=postgres
00:56:48++ OMERO_DB_PASS=
00:56:48++ OMERO_ROOT_PASS=omero
00:56:48++ OMERO_DATA_DIR=/OMERO
00:56:48++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:56:48+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
00:56:52+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl00:56:52Collecting zeroc-ice==3.6.5
00:56:53 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:56:55 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 19.6 MB/s eta 0:00:00
00:56:55Installing collected packages: zeroc-ice
00:56:56Successfully installed zeroc-ice-3.6.5
00:56:5600:56:56[notice] A new release of pip available: 22.3.1 -> 25.1.1
00:56:56[notice] To update, run: python3.11 -m pip install --upgrade pip
00:56:56+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
00:56:56Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
00:56:57Collecting setuptools<66
00:56:57 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
00:56:57Collecting omero-py
00:56:57 Using cached omero_py-5.20.0-py3-none-any.whl (2.8 MB)
00:56:57Collecting urllib3<2
00:56:57 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
00:56:57Collecting appdirs
00:56:57 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:56:57Collecting future
00:56:57 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:56:57Collecting numpy<3
00:56:57 Using cached numpy-2.2.6-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (16.8 MB)
00:56:58Collecting Pillow>=10.0.0
00:56:58 Using cached pillow-11.2.1-cp311-cp311-manylinux_2_28_x86_64.whl (4.6 MB)
00:56:58Collecting PyYAML
00:56:58 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB)
00:56:58Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
00:56:58Collecting requests
00:56:58 Using cached requests-2.32.3-py3-none-any.whl (64 kB)
00:56:58Collecting portalocker
00:56:58 Using cached portalocker-3.1.1-py3-none-any.whl (19 kB)
00:56:58Collecting charset-normalizer<4,>=2
00:56:58 Using cached charset_normalizer-3.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (147 kB)
00:56:58Collecting idna<4,>=2.5
00:56:58 Using cached idna-3.10-py3-none-any.whl (70 kB)
00:56:58Collecting certifi>=2017.4.17
00:56:58 Using cached certifi-2025.4.26-py3-none-any.whl (159 kB)
00:56:59Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset-normalizer, certifi, requests, omero-py
00:56:59 Attempting uninstall: setuptools
00:56:59 Found existing installation: setuptools 65.5.1
00:56:59 Uninstalling setuptools-65.5.1:
00:56:59 Successfully uninstalled setuptools-65.5.1
00:57:04Successfully installed Pillow-11.2.1 PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.4.26 charset-normalizer-3.4.2 future-1.0.0 idna-3.10 numpy-2.2.6 omero-py-5.20.0 portalocker-3.1.1 requests-2.32.3 setuptools-65.7.0 urllib3-1.26.20
00:57:0400:57:04[notice] A new release of pip available: 22.3.1 -> 25.1.1
00:57:04[notice] To update, run: python3.11 -m pip install --upgrade pip
00:57:04+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
00:57:04++ deactivate nondestructive
00:57:04++ '[' -n '' ']'
00:57:04++ '[' -n '' ']'
00:57:04++ hash -r
00:57:04++ '[' -n '' ']'
00:57:04++ unset VIRTUAL_ENV
00:57:04++ unset VIRTUAL_ENV_PROMPT
00:57:04++ '[' '!' nondestructive = nondestructive ']'
00:57:04++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
00:57:04++ export VIRTUAL_ENV
00:57:04++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:57:04++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:57:04++ export PATH
00:57:04++ '[' -n '' ']'
00:57:04++ '[' -z '' ']'
00:57:04++ _OLD_VIRTUAL_PS1=
00:57:04++ PS1='(omero-virtualenv) '
00:57:04++ export PS1
00:57:04++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
00:57:04++ export VIRTUAL_ENV_PROMPT
00:57:04++ hash -r
00:57:04+ source docs/hudson/OMERO.sh
00:57:04++ set -e
00:57:04++ set -u
00:57:04++ set -x
00:57:04++ source docs/hudson/functions.sh
00:57:04++ echo Building merge_ci
00:57:04Building merge_ci
00:57:04++ python3 ./build.py build-dev release-all
00:57:04Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:57:0500:57:05check-ivy:
00:57:05Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
00:57:05Created dir: /home/omero/workspace/OMERO-build/src/target
00:57:05:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:57:05:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:57:0600:57:06build-scons:
00:57:06Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:57:06No sub-builds to iterate on
00:57:06Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:57:0600:57:06buildlist:
00:57:06:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:57:06:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:57:0600:57:06clean:
00:57:06Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:57:06Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:57:0600:57:06python-clean:
00:57:06WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:57:06/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-95697a9edb-ice36-b426') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:57:06 warnings.warn(
00:57:06running clean
00:57:07Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
00:57:07Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:57:0700:57:07python-clean:
00:57:07WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:57:07/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-95697a9edb-ice36-b426') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:57:07 warnings.warn(
00:57:07running clean
00:57:07Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
00:57:07Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:57:07Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:57:07Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:57:0700:57:07python-clean:
00:57:07WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:57:07/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-95697a9edb-ice36-b426') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:57:07 warnings.warn(
00:57:07running clean
00:57:07Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
00:57:07Deleting directory /home/omero/workspace/OMERO-build/src/target
00:57:0700:57:07build-scons:
00:57:07Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:57:0700:57:07build:
00:57:07No sub-builds to iterate on
00:57:07Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:57:08Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:57:08Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:57:08Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:57:0800:57:08tools-init:
00:57:08no-op
00:57:0800:57:08retrieve:
00:57:08:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:57:08:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:57:08WARNING: An illegal reflective access operation has occurred
00:57:08WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
00:57:08WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
00:57:08WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
00:57:08WARNING: All illegal access operations will be denied in a future release
00:57:1900:57:19prepare:
00:57:19Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:57:19Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
00:57:19Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
00:57:19Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:57:19Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:57:19Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:57:19Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
00:57:19Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:57:19Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:57:19Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:57:19Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:57:19Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:57:19Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:57:19Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:57:19Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:57:1900:57:19pre-compile:
00:57:19Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:57:19Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:57:19Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:57:19Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:57:19Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:57:1900:57:19compile:
00:57:19no-op
00:57:2000:57:20package:
00:57:20Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
00:57:2000:57:20install:
00:57:20:: delivering :: omero#omero_client;working@db631b687d0c :: 5.6.3-552-95697a9edb-ice36-b426 :: integration :: Tue May 27 00:57:08 UTC 2025
00:57:20 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
00:57:20:: publishing :: omero#omero_client
00:57:20 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-552-95697a9edb-ice36-b426/omero_client-5.6.3-552-95697a9edb-ice36-b426.jar
00:57:20 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-552-95697a9edb-ice36-b426/omero_client-5.6.3-552-95697a9edb-ice36-b426.xml
00:57:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:57:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:57:2100:57:21retrieve:
00:57:21:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:57:21:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:57:21Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:57:2100:57:21dist:
00:57:21Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
00:57:21Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
00:57:21Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:57:21Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:57:21Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
00:57:21Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
00:57:21Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
00:57:21Entering /home/omero/workspace/OMERO-build/src/components/tests...
00:57:21Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:57:2200:57:22copy-licenses:
00:57:22Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:57:22Created dir: /home/omero/workspace/OMERO-build/src/dist/share
00:57:22Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
00:57:2200:57:22copy-history:
00:57:22Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:57:2200:57:22copy-etc:
00:57:22Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
00:57:22Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
00:57:2200:57:22copy-sql:
00:57:22Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
00:57:2500:57:25copy-server:
00:57:25 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
00:57:2600:57:26copy-client:
00:57:26Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
00:57:27 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
00:57:2700:57:27update-version:
00:57:27Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
00:57:2700:57:27create-workdirs:
00:57:27Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
00:57:27Created dir: /home/omero/workspace/OMERO-build/src/dist/var
00:57:2700:57:27copy-luts:
00:57:27Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:57:27Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:57:2700:57:27test-compile:
00:57:27:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:57:27Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:57:27Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:57:27Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:57:27Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:57:27Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:57:27Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:57:27Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:57:2800:57:28testng-init:
00:57:28:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:57:28:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:57:3100:57:31,490 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
00:57:3100:57:31,492 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6f49a165 - No custom configurators were discovered as a service.
00:57:3100:57:31,492 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6f49a165 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
00:57:3100:57:31,496 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6f49a165 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
00:57:3100:57:31,496 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
00:57:3100:57:31,496 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
00:57:3100:57:31,497 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6f49a165 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
00:57:3100:57:31,497 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6f49a165 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
00:57:3100:57:31,499 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6f49a165 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
00:57:3100:57:31,499 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
00:57:3100:57:31,500 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:57:3100:57:31,500 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@20110864 - Resource [logback.xml] occurs multiple times on the classpath.
00:57:3100:57:31,500 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@20110864 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:57:3100:57:31,501 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@20110864 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
00:57:3100:57:31,704 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
00:57:3100:57:31,704 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
00:57:3100:57:31,723 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
00:57:3100:57:31,725 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@1391204c - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
00:57:3100:57:31,725 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@1391204c - Please move "immediateFlush" property into the enclosing appender.
00:57:3100:57:31,787 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@1391204c - Setting the "immediateFlush" property of the enclosing appender to true
00:57:3100:57:31,788 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
00:57:3100:57:31,788 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
00:57:3100:57:31,788 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
00:57:3100:57:31,788 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
00:57:3100:57:31,788 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
00:57:3100:57:31,788 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
00:57:3100:57:31,789 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2be6103f - End of configuration.
00:57:3100:57:31,791 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@986deaf - Registering current configuration as safe fallback point
00:57:3100:57:31,791 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6f49a165 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 292 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
00:57:3100:57:31lifecycle.test-compile:
00:57:31Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:57:31Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:57:32warning: [options] bootstrap class path not set in conjunction with -source 8
00:57:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:57:33import omero.grid.RawAccessRequest;
00:57:33 ^
00:57:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:57:33import omero.grid.RawAccessRequest;
00:57:33 ^
00:57:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:57:33import omero.grid.RawAccessRequest;
00:57:33 ^
00:57:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
00:57:33import omero.model.ImportJob;
00:57:33 ^
00:57:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:57:33import omero.model.ImportJobI;
00:57:33 ^
00:57:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
00:57:34 IObject link = (IObject) linkClass.newInstance();
00:57:34 ^
00:57:34 where T is a type-variable:
00:57:34 T extends Object declared in class Class
00:57:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
00:57:34 T copy = (T) obj.getClass().newInstance();
00:57:34 ^
00:57:34 where T is a type-variable:
00:57:34 T extends Object declared in class Class
00:57:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:57:34 RawAccessRequest raw = new RawAccessRequest();
00:57:34 ^
00:57:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:57:34 RawAccessRequest raw = new RawAccessRequest();
00:57:34 ^
00:57:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:57:34 raw.repoUuid = legacy.root().getHash().getValue();
00:57:34 ^
00:57:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
00:57:34 raw.command = "rm";
00:57:34 ^
00:57:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
00:57:34 raw.args = Arrays.asList(path);
00:57:34 ^
00:57:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
00:57:34 final IObject link = linkClass.newInstance();
00:57:34 ^
00:57:34 where T is a type-variable:
00:57:34 T extends Object declared in class Class
00:57:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
00:57:34 originalLink.setChild(annotationClass.newInstance());
00:57:34 ^
00:57:34 where T is a type-variable:
00:57:34 T extends Object declared in class Class
00:57:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:57:35 RoiResult r = svc.findByImage(id, new RoiOptions());
00:57:35 ^
00:57:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:57:35 final RawAccessRequest request = new RawAccessRequest();
00:57:35 ^
00:57:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:57:35 final RawAccessRequest request = new RawAccessRequest();
00:57:35 ^
00:57:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:57:35 request.repoUuid = repo.root().getHash().getValue();
00:57:35 ^
00:57:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
00:57:35 request.command = "exists";
00:57:35 ^
00:57:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
00:57:35 request.args = Collections.singletonList(dirPath);
00:57:35 ^
00:57:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:57:35 final RawAccessRequest request = new RawAccessRequest();
00:57:35 ^
00:57:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:57:35 final RawAccessRequest request = new RawAccessRequest();
00:57:35 ^
00:57:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:57:35 request.repoUuid = repo.root().getHash().getValue();
00:57:35 ^
00:57:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
00:57:35 request.command = "exists";
00:57:35 ^
00:57:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
00:57:35 request.args = Collections.singletonList(dirName);
00:57:35 ^
00:57:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
00:57:35 final ImportJob importJob = new ImportJobI();
00:57:35 ^
00:57:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:57:35 final ImportJob importJob = new ImportJobI();
00:57:35 ^
00:57:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
00:57:35 importJob.setImageName(omero.rtypes.rstring(name));
00:57:35 ^
00:57:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
00:57:35 importJob.setImageDescription(omero.rtypes.rstring(desc));
00:57:35 ^
00:57:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:57:35 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:57:35 ^
00:57:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:57:35 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:57:35 ^
00:57:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:57:35 final String savedName = sent.getImageName().getValue().toString();
00:57:35 ^
00:57:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:57:35 final String savedDesc = sent.getImageDescription().getValue().toString();
00:57:35 ^
00:57:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:57:35 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:57:35 ^
00:57:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:57:35 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:57:35 ^
00:57:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:57:35 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
00:57:35 ^
00:57:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:57:35 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
00:57:35 ^
00:57:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:57:36 RoiResult r = svc.findByImage(image.getId().getValue(),
00:57:36 ^
00:57:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:57:36 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:57:36 ^
00:57:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:57:36 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:57:36 ^
00:57:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:57:36 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:57:36 ^
00:57:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:57:36 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:57:36 ^
00:57:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
00:57:36 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
00:57:36 ^
00:57:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:57:36 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:57:36 ^
00:57:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
00:57:36 table = svc.getTable(f.getId().getValue());
00:57:36 ^
00:57:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:57:36 RoiResult r = svc.findByImage(image.getId().getValue(),
00:57:36 ^
00:57:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:57:36 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
00:57:36 ^
00:57:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:57:36 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
00:57:36 ^
00:57:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:57:36 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
00:57:36 ^
00:57:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:57:36 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
00:57:36 ^
00:57:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:57:36 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:57:36 ^
00:57:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:57:36 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:57:36 ^
00:57:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:57:36 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:57:36 ^
00:57:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:57:36 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:57:36 ^
00:57:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
00:57:36 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:57:36 ^
00:57:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:57:36 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:57:36 ^
00:57:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:57:36 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:57:36 ^
00:57:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:57:36 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:57:36 ^
00:57:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:57:36 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:57:36 ^
00:57:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:57:36 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:57:36 ^
00:57:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:57:36 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:57:36 ^
00:57:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:57:36 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:57:36 ^
00:57:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:57:36 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:57:36 ^
00:57:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:57:36 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:57:36 ^
00:57:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:57:36 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:57:36 ^
00:57:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:57:36 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:57:36 ^
00:57:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:57:36 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:57:36 ^
00:57:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:57:36 svc.getShapeStatsRestricted(
00:57:36 ^
00:57:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:57:36 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
00:57:36 ^
00:57:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:57:36 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:57:36 ^
00:57:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:57:36 request.typesToIgnore = Collections.singletonList("TagAnnotation");
00:57:36 ^
00:57:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:57:36 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
00:57:36 ^
00:57:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:57:36 request.typesToIgnore = Collections.singletonList("Annotation");
00:57:36 ^
00:57:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:57:36 request.typesToIgnore = Collections.singletonList("Annotation");
00:57:36 ^
00:57:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:57:36 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:57:36 ^
00:57:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:57:36 p2.setRelatedTo(p1);
00:57:36 ^
00:57:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:57:36 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
00:57:36 ^
00:57:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:57:36 pixels1.setRelatedTo(pixels2);
00:57:36 ^
00:57:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:57:36 Pixels pixels = pixels1.getRelatedTo();
00:57:36 ^
00:57:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:57:36 Assert.assertNull(pixels1.getRelatedTo());
00:57:36 ^
00:57:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:57:36 pixels1.setRelatedTo(pixels2);
00:57:36 ^
00:57:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:57:36 Pixels pixels = pixels1.getRelatedTo();
00:57:36 ^
00:57:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:57:36 Assert.assertNull(pixels1.getRelatedTo());
00:57:36 ^
00:57:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:57:36 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:57:36 ^
00:57:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:57:36 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:57:36 ^
00:57:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:57:36 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:57:36 ^
00:57:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:57:36 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:57:36 ^
00:57:36Note: Some input files use unchecked or unsafe operations.
00:57:36Note: Recompile with -Xlint:unchecked for details.
00:57:3688 warnings
00:57:36Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_241271990.tmp
00:57:36Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
00:57:36:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:57:36:: delivering :: omero#OmeroJava-test;working@db631b687d0c :: 5.6.3-552-95697a9edb-ice36-b426 :: integration :: Tue May 27 00:57:27 UTC 2025
00:57:36 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
00:57:36:: publishing :: omero#OmeroJava-test
00:57:36 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-552-95697a9edb-ice36-b426.jar
00:57:36 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-552-95697a9edb-ice36-b426.xml
00:57:3600:57:36build-eclipse:
00:57:36No sub-builds to iterate on
00:57:36Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:57:3700:57:37retrieve:
00:57:37:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:57:37:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:57:3900:57:39prepare:
00:57:39Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:57:4000:57:40release-clients:
00:57:40Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-552-95697a9edb-ice36-b426.zip
00:57:4500:57:45release-zip:
00:57:45Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-552-95697a9edb-ice36-b426.zip
00:57:5700:57:57BUILD SUCCESSFUL
00:57:57Total time: 52 seconds
00:57:57++ '[' -d .git ']'
00:57:57++ python3 ./build.py release-src
00:57:57Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:57:5700:57:57release-src-git:
00:57:57Releasing openmicroscopy-5.6.3-552-95697a9edb-ice36-b426
00:57:59 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-552-95697a9edb-ice36-b426.zip
00:57:59 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-552-95697a9edb-ice36-b426-base.zip
00:58:0000:58:00BUILD SUCCESSFUL
00:58:00Total time: 3 seconds
00:58:00++ echo BUILD_NUMBER=426
00:58:00++ echo OMERO_BRANCH=merge_ci
00:58:00++ git_info
00:58:00+++ git rev-parse HEAD
00:58:00++ HEAD=95697a9edb599747d89f2b5e0d8ae7718c594410
00:58:00++ git log --max-count=1 95697a9edb599747d89f2b5e0d8ae7718c594410
00:58:00++ env
00:58:00++ sort
00:58:00Archiving artifacts
00:58:25Finished: SUCCESS
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