04:53:45Started by upstream project "Trigger" build number 52604:53:45originally caused by:
04:53:45 Started by user devspace04:53:45Running as SYSTEM
04:53:45Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
04:53:45The recommended git tool is: NONE
04:53:45No credentials specified
04:53:45 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
04:53:45Fetching changes from the remote Git repository
04:53:45 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
04:53:45Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git04:53:45 > git --version # timeout=10
04:53:45 > git --version # 'git version 2.43.5'
04:53:45 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
04:53:45 > git rev-parse origin/merge_ci^{commit} # timeout=10
04:53:45Checking out Revision 5cb394a3c1305b16167057685d60e611d3b0fc70 (origin/merge_ci)
04:53:45 > git config core.sparsecheckout # timeout=10
04:53:45 > git checkout -f 5cb394a3c1305b16167057685d60e611d3b0fc70 # timeout=10
04:53:46Commit message: "Add version.properties to etc/omero.properties"
04:53:46 > git rev-list --no-walk bca435d34b768dc4308207c233806d11a054f5a0 # timeout=10
04:53:46Cleaning workspace
04:53:46 > git rev-parse --verify HEAD # timeout=10
04:53:46Resetting working tree
04:53:46 > git reset --hard # timeout=10
04:53:46 > git clean -fdx # timeout=10
04:53:47Copied 6 artifacts from "OMERO-python-superbuild-build" build number 43804:53:47[OMERO-build] $ /bin/bash -xe /tmp/jenkins8764782736594877008.sh
04:53:47+ mv omero-scripts/dist/omero_scripts-5.9.2.dev0.tar.gz .
04:53:47+ cd src
04:53:47+ export OMERO_BRANCH=merge_ci
04:53:47+ OMERO_BRANCH=merge_ci
04:53:47+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
04:53:47+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
04:53:47+ source /home/omero/settings.env
04:53:47++ OMERO_DB_HOST=pg
04:53:47++ OMERO_DB_USER=postgres
04:53:47++ OMERO_DB_PASS=
04:53:47++ OMERO_ROOT_PASS=omero
04:53:47++ OMERO_DATA_DIR=/OMERO
04:53:47++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
04:53:47+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
04:53:50+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl04:53:51Collecting zeroc-ice==3.6.5
04:53:51 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
04:53:54 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 5.2 MB/s eta 0:00:00
04:53:55Installing collected packages: zeroc-ice
04:53:55Successfully installed zeroc-ice-3.6.5
04:53:5604:53:56[notice] A new release of pip available: 22.3.1 -> 25.1.1
04:53:56[notice] To update, run: python3.11 -m pip install --upgrade pip
04:53:56+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
04:53:56Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
04:53:58Collecting setuptools<66
04:53:58 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
04:53:58Collecting omero-py
04:53:58 Using cached omero_py-5.21.0-py3-none-any.whl (2.8 MB)
04:53:58Collecting urllib3<2
04:53:58 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
04:53:58Collecting appdirs
04:53:58 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
04:53:58Collecting future
04:53:58 Using cached future-1.0.0-py3-none-any.whl (491 kB)
04:53:58Collecting numpy<3
04:53:58 Using cached numpy-2.3.0-cp311-cp311-manylinux_2_28_x86_64.whl (16.9 MB)
04:53:59Collecting Pillow>=10.0.0
04:53:59 Using cached pillow-11.2.1-cp311-cp311-manylinux_2_28_x86_64.whl (4.6 MB)
04:53:59Collecting PyYAML
04:53:59 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB)
04:53:59Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
04:53:59Collecting requests
04:53:59 Using cached requests-2.32.4-py3-none-any.whl (64 kB)
04:53:59Collecting portalocker
04:53:59 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
04:53:59Collecting charset_normalizer<4,>=2
04:53:59 Using cached charset_normalizer-3.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (147 kB)
04:53:59Collecting idna<4,>=2.5
04:53:59 Using cached idna-3.10-py3-none-any.whl (70 kB)
04:53:59Collecting certifi>=2017.4.17
04:54:00 Using cached certifi-2025.6.15-py3-none-any.whl (157 kB)
04:54:00Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
04:54:00 Attempting uninstall: setuptools
04:54:00 Found existing installation: setuptools 65.5.1
04:54:00 Uninstalling setuptools-65.5.1:
04:54:00 Successfully uninstalled setuptools-65.5.1
04:54:06Successfully installed Pillow-11.2.1 PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.6.15 charset_normalizer-3.4.2 future-1.0.0 idna-3.10 numpy-2.3.0 omero-py-5.21.0 portalocker-3.2.0 requests-2.32.4 setuptools-65.7.0 urllib3-1.26.20
04:54:0604:54:06[notice] A new release of pip available: 22.3.1 -> 25.1.1
04:54:06[notice] To update, run: python3.11 -m pip install --upgrade pip
04:54:06+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
04:54:06++ deactivate nondestructive
04:54:06++ '[' -n '' ']'
04:54:06++ '[' -n '' ']'
04:54:06++ hash -r
04:54:06++ '[' -n '' ']'
04:54:06++ unset VIRTUAL_ENV
04:54:06++ unset VIRTUAL_ENV_PROMPT
04:54:06++ '[' '!' nondestructive = nondestructive ']'
04:54:06++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
04:54:06++ export VIRTUAL_ENV
04:54:06++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
04:54:06++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
04:54:06++ export PATH
04:54:06++ '[' -n '' ']'
04:54:06++ '[' -z '' ']'
04:54:06++ _OLD_VIRTUAL_PS1=
04:54:06++ PS1='(omero-virtualenv) '
04:54:06++ export PS1
04:54:06++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
04:54:06++ export VIRTUAL_ENV_PROMPT
04:54:06++ hash -r
04:54:06+ source docs/hudson/OMERO.sh
04:54:06++ set -e
04:54:06++ set -u
04:54:06++ set -x
04:54:06++ source docs/hudson/functions.sh
04:54:06++ echo Building merge_ci
04:54:06Building merge_ci
04:54:06++ python3 ./build.py build-dev release-all
04:54:06Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
04:54:0704:54:07check-ivy:
04:54:07Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
04:54:07Created dir: /home/omero/workspace/OMERO-build/src/target
04:54:07:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
04:54:07:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
04:54:0704:54:07build-scons:
04:54:07Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
04:54:07No sub-builds to iterate on
04:54:07Entering /home/omero/workspace/OMERO-build/src/components/tools...
04:54:0804:54:08buildlist:
04:54:08:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
04:54:08:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
04:54:0804:54:08clean:
04:54:08Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
04:54:08Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
04:54:0804:54:08python-clean:
04:54:08WARNING: '' not a valid package name; please use only .-separated package names in setup.py
04:54:08/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-567-5cb394a3c1-ice36-b445') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
04:54:08 warnings.warn(
04:54:08running clean
04:54:08Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
04:54:08Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
04:54:0904:54:09python-clean:
04:54:09WARNING: '' not a valid package name; please use only .-separated package names in setup.py
04:54:09/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-567-5cb394a3c1-ice36-b445') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
04:54:09 warnings.warn(
04:54:09running clean
04:54:09Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
04:54:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
04:54:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
04:54:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
04:54:0904:54:09python-clean:
04:54:09WARNING: '' not a valid package name; please use only .-separated package names in setup.py
04:54:09/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-567-5cb394a3c1-ice36-b445') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
04:54:09 warnings.warn(
04:54:09running clean
04:54:09Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
04:54:09Deleting directory /home/omero/workspace/OMERO-build/src/target
04:54:0904:54:09build-scons:
04:54:09Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
04:54:0904:54:09build:
04:54:09No sub-builds to iterate on
04:54:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
04:54:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
04:54:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
04:54:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
04:54:0904:54:09tools-init:
04:54:09no-op
04:54:1004:54:10retrieve:
04:54:10:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
04:54:10:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
04:54:10WARNING: An illegal reflective access operation has occurred
04:54:10WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
04:54:10WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
04:54:10WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
04:54:10WARNING: All illegal access operations will be denied in a future release
04:54:3404:54:34prepare:
04:54:34Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
04:54:34Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
04:54:34Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
04:54:34Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
04:54:34Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
04:54:34Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
04:54:34Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
04:54:34Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
04:54:34Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
04:54:34Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
04:54:34Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
04:54:34Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
04:54:34Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
04:54:34Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
04:54:34Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
04:54:3404:54:34pre-compile:
04:54:34Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
04:54:34Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
04:54:34Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
04:54:35Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
04:54:35Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
04:54:3504:54:35compile:
04:54:35no-op
04:54:3504:54:35package:
04:54:35Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
04:54:3504:54:35install:
04:54:35:: delivering :: omero#omero_client;working@e00e2281d595 :: 5.6.3-567-5cb394a3c1-ice36-b445 :: integration :: Wed Jun 18 04:54:09 UTC 2025
04:54:35 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
04:54:35:: publishing :: omero#omero_client
04:54:35 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-567-5cb394a3c1-ice36-b445/omero_client-5.6.3-567-5cb394a3c1-ice36-b445.jar
04:54:35 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-567-5cb394a3c1-ice36-b445/omero_client-5.6.3-567-5cb394a3c1-ice36-b445.xml
04:54:35Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
04:54:35Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
04:54:3604:54:36retrieve:
04:54:36:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
04:54:36:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
04:54:36Entering /home/omero/workspace/OMERO-build/src/components/tools...
04:54:3604:54:36dist:
04:54:36Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
04:54:36Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
04:54:36Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
04:54:36Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.2.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
04:54:36Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
04:54:36Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
04:54:36Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
04:54:36Entering /home/omero/workspace/OMERO-build/src/components/tests...
04:54:36Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
04:54:3604:54:36copy-licenses:
04:54:36Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
04:54:36Created dir: /home/omero/workspace/OMERO-build/src/dist/share
04:54:36Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
04:54:3604:54:36copy-history:
04:54:36Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
04:54:3604:54:36copy-etc:
04:54:36Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
04:54:36Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
04:54:3604:54:36copy-sql:
04:54:36Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
04:54:4004:54:40copy-server:
04:54:40 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
04:54:4104:54:41copy-client:
04:54:41Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
04:54:42 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
04:54:4204:54:42update-version:
04:54:42Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
04:54:4204:54:42create-workdirs:
04:54:42Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
04:54:42Created dir: /home/omero/workspace/OMERO-build/src/dist/var
04:54:4204:54:42copy-luts:
04:54:42Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
04:54:42Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
04:54:4204:54:42test-compile:
04:54:42:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
04:54:42Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
04:54:42Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
04:54:42Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
04:54:42Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
04:54:42Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
04:54:42Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
04:54:42Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
04:54:4204:54:42testng-init:
04:54:42:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
04:54:42:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
04:54:4504:54:45,319 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
04:54:4504:54:45,321 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5d3e24e2 - No custom configurators were discovered as a service.
04:54:4504:54:45,321 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5d3e24e2 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
04:54:4504:54:45,324 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5d3e24e2 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
04:54:4504:54:45,325 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
04:54:4504:54:45,325 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
04:54:4504:54:45,326 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5d3e24e2 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
04:54:4504:54:45,326 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5d3e24e2 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
04:54:4504:54:45,328 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5d3e24e2 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
04:54:4504:54:45,328 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
04:54:4504:54:45,328 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
04:54:4504:54:45,329 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@280cc940 - Resource [logback.xml] occurs multiple times on the classpath.
04:54:4504:54:45,329 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@280cc940 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
04:54:4504:54:45,329 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@280cc940 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
04:54:4504:54:45,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
04:54:4504:54:45,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
04:54:4504:54:45,545 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
04:54:4504:54:45,547 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@6a478680 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
04:54:4504:54:45,547 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@6a478680 - Please move "immediateFlush" property into the enclosing appender.
04:54:4504:54:45,609 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@6a478680 - Setting the "immediateFlush" property of the enclosing appender to true
04:54:4504:54:45,610 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
04:54:4504:54:45,610 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
04:54:4504:54:45,610 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
04:54:4504:54:45,610 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
04:54:4504:54:45,610 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
04:54:4504:54:45,610 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
04:54:4504:54:45,611 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7eecb648 - End of configuration.
04:54:4504:54:45,613 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@52599443 - Registering current configuration as safe fallback point
04:54:4504:54:45,613 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5d3e24e2 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 285 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
04:54:4504:54:45lifecycle.test-compile:
04:54:45Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
04:54:45Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
04:54:45warning: [options] bootstrap class path not set in conjunction with -source 8
04:54:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
04:54:47import omero.grid.RawAccessRequest;
04:54:47 ^
04:54:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
04:54:47import omero.grid.RawAccessRequest;
04:54:47 ^
04:54:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
04:54:47import omero.grid.RawAccessRequest;
04:54:47 ^
04:54:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
04:54:47import omero.model.ImportJob;
04:54:47 ^
04:54:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
04:54:47import omero.model.ImportJobI;
04:54:47 ^
04:54:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
04:54:48 IObject link = (IObject) linkClass.newInstance();
04:54:48 ^
04:54:48 where T is a type-variable:
04:54:48 T extends Object declared in class Class
04:54:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
04:54:48 T copy = (T) obj.getClass().newInstance();
04:54:48 ^
04:54:48 where T is a type-variable:
04:54:48 T extends Object declared in class Class
04:54:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
04:54:48 RawAccessRequest raw = new RawAccessRequest();
04:54:48 ^
04:54:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
04:54:48 RawAccessRequest raw = new RawAccessRequest();
04:54:48 ^
04:54:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
04:54:48 raw.repoUuid = legacy.root().getHash().getValue();
04:54:48 ^
04:54:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
04:54:48 raw.command = "rm";
04:54:48 ^
04:54:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
04:54:48 raw.args = Arrays.asList(path);
04:54:48 ^
04:54:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
04:54:48 final IObject link = linkClass.newInstance();
04:54:48 ^
04:54:48 where T is a type-variable:
04:54:48 T extends Object declared in class Class
04:54:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
04:54:48 originalLink.setChild(annotationClass.newInstance());
04:54:48 ^
04:54:48 where T is a type-variable:
04:54:48 T extends Object declared in class Class
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
04:54:49 RoiResult r = svc.findByImage(id, new RoiOptions());
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
04:54:49 final RawAccessRequest request = new RawAccessRequest();
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
04:54:49 final RawAccessRequest request = new RawAccessRequest();
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
04:54:49 request.repoUuid = repo.root().getHash().getValue();
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
04:54:49 request.command = "exists";
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
04:54:49 request.args = Collections.singletonList(dirPath);
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
04:54:49 final RawAccessRequest request = new RawAccessRequest();
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
04:54:49 final RawAccessRequest request = new RawAccessRequest();
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
04:54:49 request.repoUuid = repo.root().getHash().getValue();
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
04:54:49 request.command = "exists";
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
04:54:49 request.args = Collections.singletonList(dirName);
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
04:54:49 final ImportJob importJob = new ImportJobI();
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
04:54:49 final ImportJob importJob = new ImportJobI();
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
04:54:49 importJob.setImageName(omero.rtypes.rstring(name));
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
04:54:49 importJob.setImageDescription(omero.rtypes.rstring(desc));
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
04:54:49 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
04:54:49 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
04:54:49 final String savedName = sent.getImageName().getValue().toString();
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
04:54:49 final String savedDesc = sent.getImageDescription().getValue().toString();
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
04:54:49 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
04:54:49 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
04:54:49 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
04:54:49 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
04:54:49 RoiResult r = svc.findByImage(image.getId().getValue(),
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
04:54:49 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
04:54:49 l = svc.getRoiMeasurements(image.getId().getValue(), options);
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
04:54:49 l = svc.getRoiMeasurements(image.getId().getValue(), options);
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
04:54:49 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
04:54:49 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
04:54:49 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
04:54:49 table = svc.getTable(f.getId().getValue());
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
04:54:49 RoiResult r = svc.findByImage(image.getId().getValue(),
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
04:54:49 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
04:54:49 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
04:54:49 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
04:54:49 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
04:54:49 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
04:54:49 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
04:54:49 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
04:54:49 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
04:54:49 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
04:54:49 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
04:54:49 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
04:54:49 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
04:54:49 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
04:54:49 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
04:54:49 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
04:54:49 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
04:54:49 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
04:54:49 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
04:54:49 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
04:54:49 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
04:54:49 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
04:54:49 svc.getShapeStatsRestricted(
04:54:49 ^
04:54:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
04:54:49 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
04:54:49 ^
04:54:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
04:54:50 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
04:54:50 ^
04:54:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
04:54:50 request.typesToIgnore = Collections.singletonList("TagAnnotation");
04:54:50 ^
04:54:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
04:54:50 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
04:54:50 ^
04:54:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
04:54:50 request.typesToIgnore = Collections.singletonList("Annotation");
04:54:50 ^
04:54:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
04:54:50 request.typesToIgnore = Collections.singletonList("Annotation");
04:54:50 ^
04:54:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
04:54:50 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
04:54:50 ^
04:54:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
04:54:50 p2.setRelatedTo(p1);
04:54:50 ^
04:54:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
04:54:50 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
04:54:50 ^
04:54:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
04:54:50 pixels1.setRelatedTo(pixels2);
04:54:50 ^
04:54:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
04:54:50 Pixels pixels = pixels1.getRelatedTo();
04:54:50 ^
04:54:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
04:54:50 Assert.assertNull(pixels1.getRelatedTo());
04:54:50 ^
04:54:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
04:54:50 pixels1.setRelatedTo(pixels2);
04:54:50 ^
04:54:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
04:54:50 Pixels pixels = pixels1.getRelatedTo();
04:54:50 ^
04:54:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
04:54:50 Assert.assertNull(pixels1.getRelatedTo());
04:54:50 ^
04:54:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
04:54:50 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
04:54:50 ^
04:54:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
04:54:50 l = svc.getRoiMeasurements(image.getId().getValue(), options);
04:54:50 ^
04:54:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
04:54:50 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
04:54:50 ^
04:54:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
04:54:50 l = svc.getRoiMeasurements(image.getId().getValue(), options);
04:54:50 ^
04:54:50Note: Some input files use unchecked or unsafe operations.
04:54:50Note: Recompile with -Xlint:unchecked for details.
04:54:5088 warnings
04:54:50Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_740997373.tmp
04:54:50Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
04:54:50:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
04:54:50:: delivering :: omero#OmeroJava-test;working@e00e2281d595 :: 5.6.3-567-5cb394a3c1-ice36-b445 :: integration :: Wed Jun 18 04:54:42 UTC 2025
04:54:50 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
04:54:50:: publishing :: omero#OmeroJava-test
04:54:50 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-567-5cb394a3c1-ice36-b445.jar
04:54:50 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-567-5cb394a3c1-ice36-b445.xml
04:54:5004:54:50build-eclipse:
04:54:50No sub-builds to iterate on
04:54:50Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
04:54:5004:54:50retrieve:
04:54:50:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
04:54:50:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
04:54:5304:54:53prepare:
04:54:53Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
04:54:5404:54:54release-clients:
04:54:54Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-567-5cb394a3c1-ice36-b445.zip
04:54:5904:54:59release-zip:
04:54:59Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-567-5cb394a3c1-ice36-b445.zip
04:55:1104:55:11BUILD SUCCESSFUL
04:55:11Total time: 1 minute 4 seconds
04:55:11++ '[' -d .git ']'
04:55:11++ python3 ./build.py release-src
04:55:11Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
04:55:1104:55:11release-src-git:
04:55:11Releasing openmicroscopy-5.6.3-567-5cb394a3c1-ice36-b445
04:55:13 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-567-5cb394a3c1-ice36-b445.zip
04:55:13 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-567-5cb394a3c1-ice36-b445-base.zip
04:55:1404:55:14BUILD SUCCESSFUL
04:55:14Total time: 3 seconds
04:55:14++ echo BUILD_NUMBER=445
04:55:14++ echo OMERO_BRANCH=merge_ci
04:55:14++ git_info
04:55:14+++ git rev-parse HEAD
04:55:14++ HEAD=5cb394a3c1305b16167057685d60e611d3b0fc70
04:55:14++ git log --max-count=1 5cb394a3c1305b16167057685d60e611d3b0fc70
04:55:14++ env
04:55:14++ sort
04:55:14Archiving artifacts
04:55:38Finished: SUCCESS
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