08:13:48Started by upstream project "Trigger" build number 9508:13:48originally caused by:
08:13:48 Started by user devspace08:13:48Running as SYSTEM
08:13:48Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
08:13:48The recommended git tool is: NONE
08:13:48No credentials specified
08:13:48 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
08:13:48Fetching changes from the remote Git repository
08:13:48 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
08:13:48Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git08:13:48 > git --version # timeout=10
08:13:48 > git --version # 'git version 2.39.3'
08:13:48 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
08:13:53 > git rev-parse origin/merge_ci^{commit} # timeout=10
08:13:53Checking out Revision db8274c74113d86b67cae1c7360dfec3fc96e100 (origin/merge_ci)
08:13:53 > git config core.sparsecheckout # timeout=10
08:13:53 > git checkout -f db8274c74113d86b67cae1c7360dfec3fc96e100 # timeout=10
08:13:53Commit message: "Add version.properties to etc/omero.properties"
08:13:53 > git rev-list --no-walk a99039879431cc9cc2bbd46243934ce69620939c # timeout=10
08:13:53Cleaning workspace
08:13:53 > git rev-parse --verify HEAD # timeout=10
08:13:53Resetting working tree
08:13:53 > git reset --hard # timeout=10
08:13:53 > git clean -fdx # timeout=10
08:13:53Copied 6 artifacts from "OMERO-python-superbuild-build" build number 8208:13:53[OMERO-build] $ /bin/bash -xe /tmp/jenkins1666601594308213305.sh
08:13:53+ mv omero-scripts/dist/omero_scripts-5.8.3.dev0.tar.gz .
08:13:53+ cd src
08:13:53+ export OMERO_BRANCH=merge_ci
08:13:53+ OMERO_BRANCH=merge_ci
08:13:53+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
08:13:53+ source /home/omero/settings.env
08:13:53++ OMERO_DB_HOST=pg
08:13:53++ OMERO_DB_USER=postgres
08:13:53++ OMERO_DB_PASS=
08:13:53++ OMERO_ROOT_PASS=omero
08:13:53++ OMERO_DATA_DIR=/OMERO
08:13:53++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
08:13:53+ python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
08:13:56+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl08:13:57Collecting zeroc-ice==3.6.5
08:13:58 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
08:14:00WARNING: You are using pip version 21.2.3; however, version 24.0 is available.
08:14:00You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
08:14:00+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py
08:14:01Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (70.0.0)
08:14:01Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.2)
08:14:01Requirement already satisfied: numpy in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4)
08:14:01Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1)
08:14:01Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0)
08:14:01Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0)
08:14:01Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5)
08:14:01Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2)
08:14:01Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4)
08:14:01Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18)
08:14:01Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0)
08:14:01Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2)
08:14:01Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6)
08:14:01Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2)
08:14:02WARNING: You are using pip version 21.2.3; however, version 24.0 is available.
08:14:02You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
08:14:02+ source docs/hudson/OMERO.sh
08:14:02++ set -e
08:14:02++ set -u
08:14:02++ set -x
08:14:02++ source docs/hudson/functions.sh
08:14:02++ echo Building merge_ci
08:14:02Building merge_ci
08:14:02++ python3 ./build.py build-dev release-all
08:14:02OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
08:14:02Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
08:14:0308:14:03check-ivy:
08:14:03Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
08:14:03Created dir: /home/omero/workspace/OMERO-build/src/target
08:14:04:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
08:14:04:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:14:0508:14:05build-scons:
08:14:05Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
08:14:06No sub-builds to iterate on
08:14:06Entering /home/omero/workspace/OMERO-build/src/components/tools...
08:14:0608:14:06buildlist:
08:14:06:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
08:14:06:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:14:0608:14:06clean:
08:14:06Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:14:06Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:14:0708:14:07python-clean:
08:14:07WARNING: '' not a valid package name; please use only .-separated package names in setup.py
08:14:07/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-469-db8274c741-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
08:14:07 warnings.warn(
08:14:07running clean
08:14:07Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
08:14:07Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
08:14:0708:14:07python-clean:
08:14:07WARNING: '' not a valid package name; please use only .-separated package names in setup.py
08:14:07/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-469-db8274c741-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
08:14:07 warnings.warn(
08:14:07running clean
08:14:07Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
08:14:07Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
08:14:07Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:14:07Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:14:0708:14:07python-clean:
08:14:07WARNING: '' not a valid package name; please use only .-separated package names in setup.py
08:14:07/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-469-db8274c741-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
08:14:07 warnings.warn(
08:14:07running clean
08:14:07Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
08:14:07Deleting directory /home/omero/workspace/OMERO-build/src/target
08:14:0708:14:07build-scons:
08:14:07Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
08:14:0708:14:07build:
08:14:07No sub-builds to iterate on
08:14:07Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:14:07Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:14:07Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
08:14:08Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
08:14:0808:14:08tools-init:
08:14:08no-op
08:14:0808:14:08retrieve:
08:14:08:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
08:14:08:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:14:5908:14:59prepare:
08:14:59Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
08:14:59Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
08:14:59Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
08:14:59Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
08:14:59Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
08:14:59Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
08:14:59Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
08:14:59Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
08:14:59Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
08:14:59Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
08:14:59Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
08:14:59Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
08:14:59Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
08:14:59Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
08:14:59Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
08:14:5908:14:59pre-compile:
08:14:59Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
08:14:59Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
08:14:59Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
08:14:59Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
08:14:59Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
08:14:5908:14:59compile:
08:14:59no-op
08:14:5908:14:59package:
08:14:59Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
08:15:0008:15:00install:
08:15:00:: delivering :: omero#omero_client;working@2fed98c19e20 :: 5.6.3-469-db8274c741-ice36 :: integration :: Thu Jun 06 08:14:07 UTC 2024
08:15:00 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
08:15:00:: publishing :: omero#omero_client
08:15:00 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-469-db8274c741-ice36/omero_client-5.6.3-469-db8274c741-ice36.jar
08:15:00 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-469-db8274c741-ice36/omero_client-5.6.3-469-db8274c741-ice36.xml
08:15:00Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:15:00Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:15:0008:15:00retrieve:
08:15:00:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
08:15:00:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:15:00Entering /home/omero/workspace/OMERO-build/src/components/tools...
08:15:0008:15:00dist:
08:15:00Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
08:15:00Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
08:15:00Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
08:15:00Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.8.3.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
08:15:00Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
08:15:00Copying 28 files to /home/omero/workspace/OMERO-build/src/dist
08:15:00Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
08:15:00Entering /home/omero/workspace/OMERO-build/src/components/tests...
08:15:01Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
08:15:0108:15:01copy-licenses:
08:15:01Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
08:15:01Created dir: /home/omero/workspace/OMERO-build/src/dist/share
08:15:01Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
08:15:0108:15:01copy-history:
08:15:01Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
08:15:0108:15:01copy-etc:
08:15:01Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
08:15:02Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
08:15:0208:15:02copy-sql:
08:15:02Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
08:15:1908:15:19copy-server:
08:15:19 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
08:15:1908:15:19copy-client:
08:15:19Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
08:15:21 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
08:15:2108:15:21update-version:
08:15:21Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
08:15:2108:15:21create-workdirs:
08:15:21Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
08:15:21Created dir: /home/omero/workspace/OMERO-build/src/dist/var
08:15:2108:15:21copy-luts:
08:15:21Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
08:15:21Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
08:15:2108:15:21test-compile:
08:15:21:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:15:21Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
08:15:22Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:15:22Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:15:22Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:15:22Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:15:22Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
08:15:22Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
08:15:2208:15:22testng-init:
08:15:22:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
08:15:22:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:15:2608:15:26,114 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
08:15:2608:15:26,117 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - No custom configurators were discovered as a service.
08:15:2608:15:26,117 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
08:15:2608:15:26,121 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
08:15:2608:15:26,122 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
08:15:2608:15:26,122 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
08:15:2608:15:26,123 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
08:15:2608:15:26,123 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
08:15:2608:15:26,125 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
08:15:2608:15:26,125 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
08:15:2608:15:26,125 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
08:15:2608:15:26,126 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@39b266b2 - Resource [logback.xml] occurs multiple times on the classpath.
08:15:2608:15:26,126 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@39b266b2 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
08:15:2608:15:26,126 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@39b266b2 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
08:15:2608:15:26,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
08:15:2608:15:26,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
08:15:2608:15:26,400 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
08:15:2608:15:26,402 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5ea7ad41 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
08:15:2608:15:26,402 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5ea7ad41 - Please move "immediateFlush" property into the enclosing appender.
08:15:2608:15:26,469 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5ea7ad41 - Setting the "immediateFlush" property of the enclosing appender to true
08:15:2608:15:26,469 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
08:15:2608:15:26,470 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
08:15:2608:15:26,470 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
08:15:2608:15:26,470 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
08:15:2608:15:26,470 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
08:15:2608:15:26,470 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
08:15:2608:15:26,471 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3dc70c5a - End of configuration.
08:15:2608:15:26,473 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48d46169 - Registering current configuration as safe fallback point
08:15:2608:15:26,473 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 348 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
08:15:2608:15:26lifecycle.test-compile:
08:15:26Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
08:15:26Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
08:15:26warning: [options] bootstrap class path not set in conjunction with -source 8
08:15:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:15:29import omero.grid.RawAccessRequest;
08:15:29 ^
08:15:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:15:30import omero.grid.RawAccessRequest;
08:15:30 ^
08:15:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:15:30import omero.grid.RawAccessRequest;
08:15:30 ^
08:15:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
08:15:30import omero.model.ImportJob;
08:15:30 ^
08:15:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
08:15:30import omero.model.ImportJobI;
08:15:30 ^
08:15:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
08:15:31 IObject link = (IObject) linkClass.newInstance();
08:15:31 ^
08:15:31 where T is a type-variable:
08:15:31 T extends Object declared in class Class
08:15:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
08:15:31 T copy = (T) obj.getClass().newInstance();
08:15:31 ^
08:15:31 where T is a type-variable:
08:15:31 T extends Object declared in class Class
08:15:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:15:31 RawAccessRequest raw = new RawAccessRequest();
08:15:31 ^
08:15:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:15:31 RawAccessRequest raw = new RawAccessRequest();
08:15:31 ^
08:15:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
08:15:31 raw.repoUuid = legacy.root().getHash().getValue();
08:15:31 ^
08:15:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
08:15:31 raw.command = "rm";
08:15:31 ^
08:15:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
08:15:31 raw.args = Arrays.asList(path);
08:15:31 ^
08:15:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
08:15:31 final IObject link = linkClass.newInstance();
08:15:31 ^
08:15:31 where T is a type-variable:
08:15:31 T extends Object declared in class Class
08:15:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
08:15:32 originalLink.setChild(annotationClass.newInstance());
08:15:32 ^
08:15:32 where T is a type-variable:
08:15:32 T extends Object declared in class Class
08:15:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
08:15:32 RoiResult r = svc.findByImage(id, new RoiOptions());
08:15:32 ^
08:15:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:15:32 final RawAccessRequest request = new RawAccessRequest();
08:15:32 ^
08:15:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:15:32 final RawAccessRequest request = new RawAccessRequest();
08:15:32 ^
08:15:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
08:15:32 request.repoUuid = repo.root().getHash().getValue();
08:15:32 ^
08:15:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
08:15:32 request.command = "exists";
08:15:32 ^
08:15:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
08:15:32 request.args = Collections.singletonList(dirPath);
08:15:32 ^
08:15:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:15:33 final RawAccessRequest request = new RawAccessRequest();
08:15:33 ^
08:15:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:15:33 final RawAccessRequest request = new RawAccessRequest();
08:15:33 ^
08:15:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
08:15:33 request.repoUuid = repo.root().getHash().getValue();
08:15:33 ^
08:15:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
08:15:33 request.command = "exists";
08:15:33 ^
08:15:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
08:15:33 request.args = Collections.singletonList(dirName);
08:15:33 ^
08:15:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
08:15:33 final ImportJob importJob = new ImportJobI();
08:15:33 ^
08:15:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
08:15:33 final ImportJob importJob = new ImportJobI();
08:15:33 ^
08:15:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
08:15:33 importJob.setImageName(omero.rtypes.rstring(name));
08:15:33 ^
08:15:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
08:15:33 importJob.setImageDescription(omero.rtypes.rstring(desc));
08:15:33 ^
08:15:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
08:15:33 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
08:15:33 ^
08:15:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
08:15:33 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
08:15:33 ^
08:15:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
08:15:33 final String savedName = sent.getImageName().getValue().toString();
08:15:33 ^
08:15:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
08:15:33 final String savedDesc = sent.getImageDescription().getValue().toString();
08:15:33 ^
08:15:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
08:15:33 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
08:15:33 ^
08:15:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
08:15:33 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
08:15:33 ^
08:15:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
08:15:33 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
08:15:33 ^
08:15:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
08:15:33 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
08:15:33 ^
08:15:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
08:15:33 RoiResult r = svc.findByImage(image.getId().getValue(),
08:15:33 ^
08:15:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:15:33 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:15:33 ^
08:15:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:15:33 l = svc.getRoiMeasurements(image.getId().getValue(), options);
08:15:33 ^
08:15:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:15:33 l = svc.getRoiMeasurements(image.getId().getValue(), options);
08:15:33 ^
08:15:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:15:33 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:15:33 ^
08:15:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
08:15:33 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
08:15:33 ^
08:15:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:15:33 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:15:33 ^
08:15:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
08:15:33 table = svc.getTable(f.getId().getValue());
08:15:33 ^
08:15:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
08:15:33 RoiResult r = svc.findByImage(image.getId().getValue(),
08:15:33 ^
08:15:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
08:15:33 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
08:15:33 ^
08:15:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
08:15:33 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
08:15:33 ^
08:15:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
08:15:33 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
08:15:33 ^
08:15:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
08:15:33 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
08:15:33 ^
08:15:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
08:15:33 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
08:15:33 ^
08:15:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
08:15:33 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
08:15:33 ^
08:15:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
08:15:33 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
08:15:33 ^
08:15:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
08:15:33 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
08:15:33 ^
08:15:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
08:15:33 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
08:15:33 ^
08:15:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
08:15:33 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
08:15:33 ^
08:15:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
08:15:33 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
08:15:33 ^
08:15:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
08:15:33 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
08:15:33 ^
08:15:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
08:15:33 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
08:15:33 ^
08:15:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
08:15:33 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
08:15:33 ^
08:15:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
08:15:33 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
08:15:33 ^
08:15:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
08:15:33 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
08:15:33 ^
08:15:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
08:15:33 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
08:15:33 ^
08:15:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
08:15:33 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
08:15:33 ^
08:15:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
08:15:33 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
08:15:33 ^
08:15:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
08:15:33 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
08:15:33 ^
08:15:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
08:15:33 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
08:15:33 ^
08:15:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
08:15:33 svc.getShapeStatsRestricted(
08:15:33 ^
08:15:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
08:15:33 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
08:15:33 ^
08:15:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:15:34 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
08:15:34 ^
08:15:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
08:15:34 request.typesToIgnore = Collections.singletonList("TagAnnotation");
08:15:34 ^
08:15:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
08:15:34 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
08:15:34 ^
08:15:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
08:15:34 request.typesToIgnore = Collections.singletonList("Annotation");
08:15:34 ^
08:15:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
08:15:34 request.typesToIgnore = Collections.singletonList("Annotation");
08:15:34 ^
08:15:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:15:34 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
08:15:34 ^
08:15:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:15:34 p2.setRelatedTo(p1);
08:15:34 ^
08:15:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:15:34 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
08:15:34 ^
08:15:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:15:34 pixels1.setRelatedTo(pixels2);
08:15:34 ^
08:15:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:15:34 Pixels pixels = pixels1.getRelatedTo();
08:15:34 ^
08:15:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:15:34 Assert.assertNull(pixels1.getRelatedTo());
08:15:34 ^
08:15:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:15:34 pixels1.setRelatedTo(pixels2);
08:15:34 ^
08:15:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:15:34 Pixels pixels = pixels1.getRelatedTo();
08:15:34 ^
08:15:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:15:34 Assert.assertNull(pixels1.getRelatedTo());
08:15:34 ^
08:15:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:15:34 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:15:34 ^
08:15:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:15:34 l = svc.getRoiMeasurements(image.getId().getValue(), options);
08:15:34 ^
08:15:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:15:34 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:15:34 ^
08:15:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:15:34 l = svc.getRoiMeasurements(image.getId().getValue(), options);
08:15:34 ^
08:15:34Note: Some input files use unchecked or unsafe operations.
08:15:34Note: Recompile with -Xlint:unchecked for details.
08:15:3488 warnings
08:15:34Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1869087662.tmp
08:15:34Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
08:15:34:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:15:34:: delivering :: omero#OmeroJava-test;working@2fed98c19e20 :: 5.6.3-469-db8274c741-ice36 :: integration :: Thu Jun 06 08:15:22 UTC 2024
08:15:34 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
08:15:34:: publishing :: omero#OmeroJava-test
08:15:34 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-469-db8274c741-ice36.jar
08:15:34 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-469-db8274c741-ice36.xml
08:15:3408:15:34build-eclipse:
08:15:34No sub-builds to iterate on
08:15:35Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
08:15:3508:15:35retrieve:
08:15:35:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
08:15:35:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:15:3808:15:38prepare:
08:15:38Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
08:15:4008:15:40release-clients:
08:15:40Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-469-db8274c741-ice36.zip
08:15:4608:15:46release-zip:
08:15:46Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-469-db8274c741-ice36.zip
08:15:5908:15:59BUILD SUCCESSFUL
08:15:59Total time: 1 minute 56 seconds
08:15:59++ '[' -d .git ']'
08:15:59++ python3 ./build.py release-src
08:15:59OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
08:15:59Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
08:16:0008:16:00release-src-git:
08:16:00Releasing openmicroscopy-5.6.3-469-db8274c741-ice36
08:16:02 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-469-db8274c741-ice36.zip
08:16:02 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-469-db8274c741-ice36-base.zip
08:16:0308:16:03BUILD SUCCESSFUL
08:16:03Total time: 4 seconds
08:16:03++ echo BUILD_NUMBER=83
08:16:03++ echo OMERO_BRANCH=merge_ci
08:16:03++ git_info
08:16:03+++ git rev-parse HEAD
08:16:03++ HEAD=db8274c74113d86b67cae1c7360dfec3fc96e100
08:16:03++ git log --max-count=1 db8274c74113d86b67cae1c7360dfec3fc96e100
08:16:03++ env
08:16:03++ sort
08:16:03Archiving artifacts
08:16:33Finished: SUCCESS
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