![[Jenkins]](/jenkins/static/9161e9ff/images/svgs/logo.svg){kind=logo}
Started by upstream project "Trigger" build number 378 originally caused by: Started by timer [Pipeline] Start of Pipeline [Pipeline] node Still waiting to schedule task Waiting for next available executor on ‘testintegration’ Running on testintegration in /home/omero/workspace/OMERO-guides-push [Pipeline] { [Pipeline] library Loading library recursiveMerge@master Attempting to resolve master from remote references... > git --version # timeout=10 > git --version # 'git version 2.39.2' > git ls-remote -- https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Found match: refs/heads/master revision f061dff15033c5cd55249a383f52c15ca4a0e5cf The recommended git tool is: NONE No credentials specified > git rev-parse --resolve-git-dir /var/jenkins_home/jobs/OMERO-guides-push/workspace@libs/3527f795de077758b82663f7b48798100750860c75e4099522d51863b08dc748/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Fetching without tags Fetching upstream changes from https://github.com/ome/jenkins-library-recursivemerge.git > git --version # timeout=10 > git --version # 'git version 2.39.2' > git fetch --no-tags --force --progress -- https://github.com/ome/jenkins-library-recursivemerge.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Checking out Revision f061dff15033c5cd55249a383f52c15ca4a0e5cf (master) > git config core.sparsecheckout # timeout=10 > git checkout -f f061dff15033c5cd55249a383f52c15ca4a0e5cf # timeout=10 Commit message: "Merge pull request #17 from jburel/python3" > git rev-list --no-walk f061dff15033c5cd55249a383f52c15ca4a0e5cf # timeout=10 [Pipeline] checkout The recommended git tool is: NONE No credentials specified Fetching changes from the remote Git repository Checking out Revision 5a57d6af3cae6b16b1104bf499bb3f6992bd2e8a (refs/remotes/origin/master) > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-guides-push/.git # timeout=10 > git config remote.origin.url https://github.com/ome/omero-guides.git # timeout=10 Fetching upstream changes from https://github.com/ome/omero-guides.git > git --version # timeout=10 > git --version # 'git version 2.43.5' > git fetch --tags --force --progress -- https://github.com/ome/omero-guides.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 5a57d6af3cae6b16b1104bf499bb3f6992bd2e8a # timeout=10 Commit message: "Merge pull request #298 from ome/dependabot/submodules/scripts-c7a3c70" > git rev-list --no-walk 5a57d6af3cae6b16b1104bf499bb3f6992bd2e8a # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -fdx # timeout=10 > git submodule foreach --recursive git reset --hard # timeout=10 > git submodule foreach --recursive git clean -fdx # timeout=10 > git remote # timeout=10 > git submodule init # timeout=10 > git submodule sync # timeout=10 > git config --get remote.origin.url # timeout=10 > git submodule init # timeout=10 > git config -f .gitmodules --get-regexp ^submodule\.(.+)\.url # timeout=10 > git config --get submodule.cellprofiler.url # timeout=10 > git config -f .gitmodules --get submodule.cellprofiler.path # timeout=10 > git config --get submodule.matlab.url # timeout=10 > git config -f .gitmodules --get submodule.matlab.path # timeout=10 > git config --get submodule.qupath.url # timeout=10 > git config -f .gitmodules --get submodule.qupath.path # timeout=10 > git config --get submodule.fiji.url # timeout=10 > git config -f .gitmodules --get submodule.fiji.path # timeout=10 > git config --get submodule.orbit.url # timeout=10 > git config -f .gitmodules --get submodule.orbit.path # timeout=10 > git config --get submodule.r.url # timeout=10 > git config -f .gitmodules --get submodule.r.path # timeout=10 > git config --get submodule.figure.url # timeout=10 > git config -f .gitmodules --get submodule.figure.path # timeout=10 > git config --get submodule.trackmate.url # timeout=10 > git config -f .gitmodules --get submodule.trackmate.path # timeout=10 > git config --get submodule.python.url # timeout=10 > git config -f .gitmodules --get submodule.python.path # timeout=10 > git config --get submodule.parade.url # timeout=10 > git config -f .gitmodules --get submodule.parade.path # timeout=10 > git config --get submodule.fpbioimage.url # timeout=10 > git config -f .gitmodules --get submodule.fpbioimage.path # timeout=10 > git config --get submodule.iviewer.url # timeout=10 > git config -f .gitmodules --get submodule.iviewer.path # timeout=10 > git config --get submodule.upload.url # timeout=10 > git config -f .gitmodules --get submodule.upload.path # timeout=10 > git config --get submodule.ilastik.url # timeout=10 > git config -f .gitmodules --get submodule.ilastik.path # timeout=10 > git config --get submodule.introduction.url # timeout=10 > git config -f .gitmodules --get submodule.introduction.path # timeout=10 > git config --get submodule.download.url # timeout=10 > git config -f .gitmodules --get submodule.download.path # timeout=10 > git config --get submodule.java.url # timeout=10 > git config -f .gitmodules --get submodule.java.path # timeout=10 > git config --get submodule.scripts.url # timeout=10 > git config -f .gitmodules --get submodule.scripts.path # timeout=10 > git config --get submodule.mde.url # timeout=10 > git config -f .gitmodules --get submodule.mde.path # timeout=10 > git submodule update --init --recursive cellprofiler # timeout=10 > git submodule update --init --recursive matlab # timeout=10 > git submodule update --init --recursive qupath # timeout=10 > git submodule update --init --recursive fiji # timeout=10 > git submodule update --init --recursive orbit # timeout=10 > git submodule update --init --recursive r # timeout=10 > git submodule update --init --recursive figure # timeout=10 > git submodule update --init --recursive trackmate # timeout=10 > git submodule update --init --recursive python # timeout=10 > git submodule update --init --recursive parade # timeout=10 > git submodule update --init --recursive fpbioimage # timeout=10 > git submodule update --init --recursive iviewer # timeout=10 > git submodule update --init --recursive upload # timeout=10 > git submodule update --init --recursive ilastik # timeout=10 > git submodule update --init --recursive introduction # timeout=10 > git submodule update --init --recursive download # timeout=10 > git submodule update --init --recursive java # timeout=10 [Pipeline] pwd [Pipeline] sh + mkdir -p build + echo build [Pipeline] sh + pushd build ~/workspace/OMERO-guides-push/build ~/workspace/OMERO-guides-push + curl -sfL https://github.com/ome/build-infra/archive/master.tar.gz + tar -zxf - + popd ~/workspace/OMERO-guides-push + python3 -m venv build/venv > git submodule update --init --recursive scripts # timeout=10 > git submodule update --init --recursive mde # timeout=10 + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ '[' -n /bin/bash -o -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-guides-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-guides-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ '[' -n /bin/bash -o -n '' ']' ++ hash -r + python3 -m pip install -U pip Requirement already satisfied: pip in ./build/venv/lib/python3.9/site-packages (21.2.3) Collecting pip Using cached pip-25.0.1-py3-none-any.whl (1.8 MB) Installing collected packages: pip Attempting uninstall: pip Found existing installation: pip 21.2.3 Uninstalling pip-21.2.3: Successfully uninstalled pip-21.2.3 Successfully installed pip-25.0.1 + python3 -m pip install scc Collecting scc Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB) Collecting PyGithub>=1.54 (from scc) Using cached PyGithub-2.6.0-py3-none-any.whl.metadata (3.9 kB) Collecting PyYAML>=5.1 (from scc) Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) Collecting future (from scc) Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) Collecting ruamel.yaml (from scc) Using cached ruamel.yaml-0.18.10-py3-none-any.whl.metadata (23 kB) Collecting ruamel.yaml.jinja2 (from scc) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB) Collecting six (from scc) Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) Collecting urllib3<2 (from scc) Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB) Collecting yaclifw<0.3,>=0.2.0 (from scc) Using cached yaclifw-0.2.0-py3-none-any.whl Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc) Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl.metadata (8.6 kB) Collecting requests>=2.14.0 (from PyGithub>=1.54->scc) Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB) Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached PyJWT-2.10.1-py3-none-any.whl.metadata (4.0 kB) Collecting typing-extensions>=4.0.0 (from PyGithub>=1.54->scc) Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB) Collecting Deprecated (from PyGithub>=1.54->scc) Using cached Deprecated-1.2.18-py2.py3-none-any.whl.metadata (5.7 kB) Collecting ruamel.yaml.clib>=0.2.7 (from ruamel.yaml->scc) Using cached ruamel.yaml.clib-0.2.12-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.7 kB) Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cryptography-44.0.1-cp39-abi3-manylinux_2_34_x86_64.whl.metadata (5.7 kB) Collecting cffi>=1.4.1 (from pynacl>=1.4.0->PyGithub>=1.54->scc) Using cached cffi-1.17.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (1.5 kB) Collecting charset-normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached charset_normalizer-3.4.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (35 kB) Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached idna-3.10-py3-none-any.whl.metadata (10 kB) Collecting certifi>=2017.4.17 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached certifi-2025.1.31-py3-none-any.whl.metadata (2.5 kB) Collecting wrapt<2,>=1.10 (from Deprecated->PyGithub>=1.54->scc) Using cached wrapt-1.17.2-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.4 kB) Collecting pycparser (from cffi>=1.4.1->pynacl>=1.4.0->PyGithub>=1.54->scc) Using cached pycparser-2.22-py3-none-any.whl.metadata (943 bytes) Using cached scc-0.20.0-py3-none-any.whl (48 kB) Using cached PyGithub-2.6.0-py3-none-any.whl (409 kB) Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (737 kB) Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) Using cached future-1.0.0-py3-none-any.whl (491 kB) Using cached ruamel.yaml-0.18.10-py3-none-any.whl (117 kB) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB) Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) Using cached PyJWT-2.10.1-py3-none-any.whl (22 kB) Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (856 kB) Using cached requests-2.32.3-py3-none-any.whl (64 kB) Using cached ruamel.yaml.clib-0.2.12-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (724 kB) Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB) Using cached Deprecated-1.2.18-py2.py3-none-any.whl (10.0 kB) Using cached certifi-2025.1.31-py3-none-any.whl (166 kB) Using cached cffi-1.17.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (445 kB) Using cached charset_normalizer-3.4.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (146 kB) Using cached cryptography-44.0.1-cp39-abi3-manylinux_2_34_x86_64.whl (4.2 MB) Using cached idna-3.10-py3-none-any.whl (70 kB) Using cached wrapt-1.17.2-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (82 kB) Using cached pycparser-2.22-py3-none-any.whl (117 kB) Installing collected packages: wrapt, urllib3, typing-extensions, six, ruamel.yaml.clib, PyYAML, pyjwt, pycparser, idna, future, charset-normalizer, certifi, yaclifw, ruamel.yaml, requests, Deprecated, cffi, ruamel.yaml.jinja2, pynacl, cryptography, PyGithub, scc Successfully installed Deprecated-1.2.18 PyGithub-2.6.0 PyYAML-6.0.2 certifi-2025.1.31 cffi-1.17.1 charset-normalizer-3.4.1 cryptography-44.0.1 future-1.0.0 idna-3.10 pycparser-2.22 pyjwt-2.10.1 pynacl-1.5.0 requests-2.32.3 ruamel.yaml-0.18.10 ruamel.yaml.clib-0.2.12 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.17.0 typing-extensions-4.12.2 urllib3-1.26.20 wrapt-1.17.2 yaclifw-0.2.0 [Pipeline] sh + export BASE_REPO=omero-guides.git + BASE_REPO=omero-guides.git + export BASE_BRANCH=master + BASE_BRANCH=master + export VERSION_LOG=/home/omero/workspace/OMERO-guides-push/build/version.tsv + VERSION_LOG=/home/omero/workspace/OMERO-guides-push/build/version.tsv + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ '[' -n /bin/bash -o -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-guides-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-guides-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ '[' -n /bin/bash -o -n '' ']' ++ hash -r + '[' merge_ci '!=' null ']' + export PUSH_BRANCH=merge_ci + PUSH_BRANCH=merge_ci + '[' null '!=' null ']' + export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment' + STATUS=success-only + MERGE_OPTIONS='-vvv --no-ask --reset --comment' + bash build/build-infra-master/recursive-merge Merge base repository (no submodule updates) 2025-02-21 01:00:27,487 [ scc.config] DEBUG Found github.token 2025-02-21 01:00:27,490 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-02-21 01:00:27,659 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-02-21 01:00:27,912 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-02-21 01:00:28,066 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-02-21 01:00:28,319 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-02-21 01:00:28,472 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2025-02-21 01:00:28,473 [ scc.gh] DEBUG 3391 remaining from 5000 (Reset at 01:02 2025-02-21 01:00:28,474 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-02-21 01:00:28,479 [ scc.git] DEBUG Check current status 2025-02-21 01:00:28,479 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-02-21 01:00:28,483 [ scc.git] DEBUG 5a57d6a Merge pull request #298 from ome/dependabot/submodules/scripts-c7a3c70 2025-02-21 01:00:28,483 [ scc.git] DEBUG Calling 'git submodule status' 2025-02-21 01:00:28,521 [ scc.git] DEBUG 248e8cbfb0372b3d3be2d82cfe9234dd2e25c140 cellprofiler (v0.4.0-32-g248e8cb) 2025-02-21 01:00:28,530 [ scc.git] DEBUG 4b1b912438f7415faf2d1f618d596968121bcfe8 download (4b1b912) 2025-02-21 01:00:28,532 [ scc.git] DEBUG 654d43b5ef64f56bd6a99c69a9c98cbb5c8f76a7 figure (v0.1.0-55-g654d43b) 2025-02-21 01:00:28,535 [ scc.git] DEBUG 218b05a197695f01d8fc3d2cc6d197981df701c9 fiji (v0.2.1-86-g218b05a) 2025-02-21 01:00:28,544 [ scc.git] DEBUG 8f4b1035592a83dacf55e5cb585fd6ebe775f7f4 fpbioimage (heads/master) 2025-02-21 01:00:28,546 [ scc.git] DEBUG f7b4afbe7c171a2063a46916851a26a84b83c4e6 ilastik (v0.3.4-2-gf7b4afb) 2025-02-21 01:00:28,556 [ scc.git] DEBUG d9033638b26778db35de1c77428190ac4cad1936 introduction (heads/master) 2025-02-21 01:00:28,565 [ scc.git] DEBUG 6ed80b33e8ddc97c930e3ea8ba00702f34e0a8ed iviewer (heads/master) 2025-02-21 01:00:28,567 [ scc.git] DEBUG a4b6b55205d0588c48baa8177aa7608fd40b3f85 java (v0.1.1-17-ga4b6b55) 2025-02-21 01:00:28,570 [ scc.git] DEBUG ecbd07c31df9b103937f4803aa35f104480365f2 matlab (v0.1.0-26-gecbd07c) 2025-02-21 01:00:28,579 [ scc.git] DEBUG d43e17feb8400f35a51d20e050b8a87bcdbcd1eb mde (heads/master) 2025-02-21 01:00:28,587 [ scc.git] DEBUG 4ef1eaaf315bbb8ae56e9ea780971735dc406f46 orbit (heads/master) 2025-02-21 01:00:28,595 [ scc.git] DEBUG 0875cf1cbb43411bfd5849763da8fe7d2bdafdc0 parade (0875cf1) 2025-02-21 01:00:28,599 [ scc.git] DEBUG b633fb39b1f0145f8897fcb4b6cbe22b083cdb43 python (v0.3.0-91-gb633fb3) 2025-02-21 01:00:28,607 [ scc.git] DEBUG 6db8b1ceb6e7a44eb6145b4976fb3e048b04ee4f qupath (heads/master) 2025-02-21 01:00:28,610 [ scc.git] DEBUG a770a1048469668b66f5bde686d5b6d84d021e6d r (v0.1.0-24-ga770a10) 2025-02-21 01:00:28,619 [ scc.git] DEBUG c7a3c703cee0d8b2db2dccff92f0d48975f55789 scripts (remotes/origin/HEAD) 2025-02-21 01:00:28,627 [ scc.git] DEBUG ffe98a8835c0f1bf345cb9ec0cfd2ba4aa304bd1 trackmate (heads/master) 2025-02-21 01:00:28,631 [ scc.git] DEBUG 7c953a800e9efa6a8d90a8b62f1d44df4fac47dd upload (v0.1.0-96-g7c953a8) 2025-02-21 01:00:28,635 [ scc.config] DEBUG Found remote.origin.url 2025-02-21 01:00:28,725 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-02-21 01:00:28,963 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides HTTP/1.1" 200 None 2025-02-21 01:00:29,217 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-02-21 01:00:29,425 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-02-21 01:00:29,678 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-02-21 01:00:29,865 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-02-21 01:00:30,117 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-02-21 01:00:30,298 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-02-21 01:00:30,551 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-02-21 01:00:30,767 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-02-21 01:00:30,769 [ scc.git] DEBUG Resetting... 2025-02-21 01:00:30,770 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2025-02-21 01:00:30,779 [ scc.git] DEBUG HEAD is now at 5a57d6a Merge pull request #298 from ome/dependabot/submodules/scripts-c7a3c70 2025-02-21 01:00:30,780 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2025-02-21 01:00:30,882 [ scc.git] DEBUG Check current status 2025-02-21 01:00:30,882 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-02-21 01:00:30,886 [ scc.git] DEBUG 5a57d6a Merge pull request #298 from ome/dependabot/submodules/scripts-c7a3c70 2025-02-21 01:00:30,886 [ scc.git] DEBUG Calling 'git submodule status' 2025-02-21 01:00:30,926 [ scc.git] DEBUG 248e8cbfb0372b3d3be2d82cfe9234dd2e25c140 cellprofiler (v0.4.0-32-g248e8cb) 2025-02-21 01:00:30,935 [ scc.git] DEBUG 4b1b912438f7415faf2d1f618d596968121bcfe8 download (4b1b912) 2025-02-21 01:00:30,938 [ scc.git] DEBUG 654d43b5ef64f56bd6a99c69a9c98cbb5c8f76a7 figure (v0.1.0-55-g654d43b) 2025-02-21 01:00:30,941 [ scc.git] DEBUG 218b05a197695f01d8fc3d2cc6d197981df701c9 fiji (v0.2.1-86-g218b05a) 2025-02-21 01:00:30,949 [ scc.git] DEBUG 8f4b1035592a83dacf55e5cb585fd6ebe775f7f4 fpbioimage (heads/master) 2025-02-21 01:00:30,952 [ scc.git] DEBUG f7b4afbe7c171a2063a46916851a26a84b83c4e6 ilastik (v0.3.4-2-gf7b4afb) 2025-02-21 01:00:30,961 [ scc.git] DEBUG d9033638b26778db35de1c77428190ac4cad1936 introduction (heads/master) 2025-02-21 01:00:30,969 [ scc.git] DEBUG 6ed80b33e8ddc97c930e3ea8ba00702f34e0a8ed iviewer (heads/master) 2025-02-21 01:00:30,972 [ scc.git] DEBUG a4b6b55205d0588c48baa8177aa7608fd40b3f85 java (v0.1.1-17-ga4b6b55) 2025-02-21 01:00:30,975 [ scc.git] DEBUG ecbd07c31df9b103937f4803aa35f104480365f2 matlab (v0.1.0-26-gecbd07c) 2025-02-21 01:00:30,983 [ scc.git] DEBUG d43e17feb8400f35a51d20e050b8a87bcdbcd1eb mde (heads/master) 2025-02-21 01:00:30,991 [ scc.git] DEBUG 4ef1eaaf315bbb8ae56e9ea780971735dc406f46 orbit (heads/master) 2025-02-21 01:00:31,000 [ scc.git] DEBUG 0875cf1cbb43411bfd5849763da8fe7d2bdafdc0 parade (0875cf1) 2025-02-21 01:00:31,004 [ scc.git] DEBUG b633fb39b1f0145f8897fcb4b6cbe22b083cdb43 python (v0.3.0-91-gb633fb3) 2025-02-21 01:00:31,012 [ scc.git] DEBUG 6db8b1ceb6e7a44eb6145b4976fb3e048b04ee4f qupath (heads/master) 2025-02-21 01:00:31,015 [ scc.git] DEBUG a770a1048469668b66f5bde686d5b6d84d021e6d r (v0.1.0-24-ga770a10) 2025-02-21 01:00:31,024 [ scc.git] DEBUG c7a3c703cee0d8b2db2dccff92f0d48975f55789 scripts (remotes/origin/HEAD) 2025-02-21 01:00:31,032 [ scc.git] DEBUG ffe98a8835c0f1bf345cb9ec0cfd2ba4aa304bd1 trackmate (heads/master) 2025-02-21 01:00:31,035 [ scc.git] DEBUG 7c953a800e9efa6a8d90a8b62f1d44df4fac47dd upload (v0.1.0-96-g7c953a8) 2025-02-21 01:00:31,036 [ scc.merge] INFO Merging Pull Request(s) based on master 2025-02-21 01:00:31,037 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2025-02-21 01:00:31,037 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2025-02-21 01:00:31,037 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2025-02-21 01:00:31,037 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2025-02-21 01:00:31,037 [ scc.repo] DEBUG ## PRs found: 2025-02-21 01:00:31,040 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-02-21 01:00:31,315 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides/pulls HTTP/1.1" 200 None 2025-02-21 01:00:31,318 [ scc.repo] DEBUG ## Branches found: 2025-02-21 01:00:31,318 [ scc.git] DEBUG Get sha1 of %s 2025-02-21 01:00:31,318 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-02-21 01:00:31,323 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-02-21 01:00:31,327 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-02-21 01:00:31,327 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-02-21 01:00:31,332 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-02-21 01:00:31,338 [ scc.git] DEBUG Already up to date. 2025-02-21 01:00:31,338 [ scc.git] DEBUG ## Unique users: [] 2025-02-21 01:00:31,338 [ scc.git] DEBUG Get sha1 of %s 2025-02-21 01:00:31,338 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-02-21 01:00:31,342 [ scc.git] DEBUG Calling 'git submodule update' 2025-02-21 01:00:31,394 [ scc.git] DEBUG Get sha1 of %s 2025-02-21 01:00:31,394 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-02-21 01:00:31,400 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-02-21 01:00:32,706 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f19c7778d90> has no local changes 2025-02-21 01:00:32,707 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone Repository: ome/omero-guides Excluded PRs: - PR 23 jburel 'Remove submodules' (exclude comment) Already up to date. Generated by OMERO-guides-push#316 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/316/)' 2025-02-21 01:00:32,768 [ scc.git] DEBUG [detached HEAD 502cc8e] merge master -Dorg -Snone 2025-02-21 01:00:32,768 [ scc.merge] INFO Repository: ome/omero-guides 2025-02-21 01:00:32,768 [ scc.merge] INFO Excluded PRs: 2025-02-21 01:00:32,768 [ scc.merge] INFO - PR 23 jburel 'Remove submodules' (exclude comment) 2025-02-21 01:00:32,768 [ scc.merge] INFO Already up to date. 2025-02-21 01:00:32,768 [ scc.merge] INFO 2025-02-21 01:00:32,768 [ scc.merge] INFO 2025-02-21 01:00:32,768 [ scc.merge] DEBUG Cleaning remote branches created for merging 2025-02-21 01:00:32,769 [ scc.git] DEBUG Calling 'git remote' Synchronizing submodule url for 'cellprofiler' Synchronizing submodule url for 'download' Synchronizing submodule url for 'figure' Synchronizing submodule url for 'fiji' Synchronizing submodule url for 'fpbioimage' Synchronizing submodule url for 'ilastik' Synchronizing submodule url for 'introduction' Synchronizing submodule url for 'iviewer' Synchronizing submodule url for 'java' Synchronizing submodule url for 'matlab' Synchronizing submodule url for 'mde' Synchronizing submodule url for 'orbit' Synchronizing submodule url for 'parade' Synchronizing submodule url for 'python' Synchronizing submodule url for 'qupath' Synchronizing submodule url for 'r' Synchronizing submodule url for 'scripts' Synchronizing submodule url for 'trackmate' Synchronizing submodule url for 'upload' Submodule path 'download': checked out 'a27d196bee4a96b586246dc5d94ef07db7c5c0f8' Submodule path 'parade': checked out '908b3356722bb23aafe103d87f8675f80fbaa5ed' fatal: unable to access 'https://github.com/ome/omero-guide-r.git/': Could not resolve host: github.com fatal: Unable to fetch in submodule path 'r' [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline ERROR: script returned exit code 128 Finished: FAILURE