Skipping 225 KB..
Full LogTestTestTestTestTestTestTestTestTestTestTestTestTest
2025-08-19 00:55:03,215 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:03,515 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None
2025-08-19 00:55:03,768 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:04,000 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1896cfebc876f939f8d83bd1cf56b8584ff2921d?per_page=1 HTTP/1.1" 200 2
2025-08-19 00:55:04,000 [ scc.repo] DEBUG - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-19 00:55:04,252 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:04,485 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None
2025-08-19 00:55:04,737 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:04,990 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None
2025-08-19 00:55:05,243 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:05,553 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2025-08-19 00:55:05,806 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:06,065 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-19 00:55:06,317 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:06,608 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2025-08-19 00:55:06,861 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:07,070 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/45ee35acc44a7d119aa20b38b0427efbe5405322?per_page=1 HTTP/1.1" 200 2
2025-08-19 00:55:07,071 [ scc.repo] DEBUG - PR 74 will-moore 'mapr extension of webclient'
2025-08-19 00:55:07,071 [ scc.repo] DEBUG ## Branches found:
2025-08-19 00:55:07,071 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2025-08-19 00:55:07,071 [ scc.git] DEBUG Get sha1 of %s
2025-08-19 00:55:07,071 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:55:07,074 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-19 00:55:07,077 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-19 00:55:07,077 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-19 00:55:07,080 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-19 00:55:07,083 [ scc.git] DEBUG Already up to date.
2025-08-19 00:55:07,083 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head'
2025-08-19 00:55:07,372 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2025-08-19 00:55:07,372 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD
2025-08-19 00:55:07,377 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head'
2025-08-19 00:55:07,659 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2025-08-19 00:55:07,659 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD
2025-08-19 00:55:07,663 [ scc.git] DEBUG ## Unique users: []
2025-08-19 00:55:07,664 [ scc.git] DEBUG Get sha1 of %s
2025-08-19 00:55:07,664 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:55:07,666 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45ee35acc44a7d119aa20b38b0427efbe5405322'
2025-08-19 00:55:07,670 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:55:07,672 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (mapr extension of webclient) 45ee35acc44a7d119aa20b38b0427efbe5405322'
2025-08-19 00:55:07,681 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-19 00:55:07,685 [ scc.git] DEBUG .../templates/webclient/base/base_container.html | 182 +++++++++++++
2025-08-19 00:55:07,685 [ scc.git] DEBUG .../data/includes/right_plugin.general.js.html | 290 ---------------------
2025-08-19 00:55:07,686 [ scc.git] DEBUG requirements.txt | 2 +-
2025-08-19 00:55:07,686 [ scc.git] DEBUG 3 files changed, 183 insertions(+), 291 deletions(-)
2025-08-19 00:55:07,686 [ scc.git] DEBUG create mode 100644 omero_mapr/templates/webclient/base/base_container.html
2025-08-19 00:55:07,686 [ scc.git] DEBUG delete mode 100644 omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html
2025-08-19 00:55:07,688 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:07,919 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-19 00:55:07,920 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2025-08-19 00:55:07,924 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:55:07,926 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2025-08-19 00:55:07,935 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-19 00:55:07,938 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-08-19 00:55:07,938 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-08-19 00:55:08,171 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:08,370 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-19 00:55:08,370 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-19 00:55:08,410 [ scc.git] DEBUG Get sha1 of %s
2025-08-19 00:55:08,410 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:55:08,413 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-19 00:55:08,454 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-19 00:55:08,457 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb1dcdd8390> has no local changes
2025-08-19 00:55:08,457 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#508 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/508/)'
2025-08-19 00:55:08,464 [ scc.git] DEBUG [detached HEAD aecb76f] merge master -Dorg -Ssuccess-only
2025-08-19 00:55:08,464 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-19 00:55:08,464 [ scc.repo] DEBUG ## PRs found:
2025-08-19 00:55:08,623 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:08,934 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None
2025-08-19 00:55:09,187 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:09,460 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None
2025-08-19 00:55:09,713 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:09,991 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None
2025-08-19 00:55:10,244 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:10,598 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-08-19 00:55:10,851 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:11,121 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-19 00:55:11,374 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:11,704 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-08-19 00:55:11,956 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:12,176 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2
2025-08-19 00:55:12,177 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-08-19 00:55:12,429 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:12,736 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None
2025-08-19 00:55:12,989 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:13,228 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None
2025-08-19 00:55:13,481 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:13,784 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-08-19 00:55:14,037 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:14,253 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-19 00:55:14,505 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:14,844 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-08-19 00:55:15,096 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:15,335 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2025-08-19 00:55:15,335 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-08-19 00:55:15,336 [ scc.repo] DEBUG ## Branches found:
2025-08-19 00:55:15,336 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-08-19 00:55:15,336 [ scc.git] DEBUG Get sha1 of %s
2025-08-19 00:55:15,336 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:55:15,339 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-19 00:55:15,341 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-19 00:55:15,341 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-19 00:55:15,344 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-19 00:55:15,352 [ scc.git] DEBUG Updating 3cd120c..55060a2
2025-08-19 00:55:15,588 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:16,047 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2025-08-19 00:55:16,048 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2025-08-19 00:55:16,332 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-08-19 00:55:16,332 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2025-08-19 00:55:16,337 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2025-08-19 00:55:16,616 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-08-19 00:55:16,616 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2025-08-19 00:55:16,620 [ scc.git] DEBUG ## Unique users: []
2025-08-19 00:55:16,620 [ scc.git] DEBUG Get sha1 of %s
2025-08-19 00:55:16,620 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:55:16,623 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-08-19 00:55:16,628 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:55:16,630 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-08-19 00:55:16,643 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2025-08-19 00:55:16,643 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2025-08-19 00:55:16,643 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-08-19 00:55:16,643 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-08-19 00:55:16,644 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-19 00:55:16,644 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-19 00:55:16,647 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-19 00:55:16,652 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-08-19 00:55:16,654 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:16,841 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-19 00:55:16,841 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-08-19 00:55:16,846 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-19 00:55:16,849 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#508](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/508/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/508/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/cli.py
- src/omero_metadata/populate.py
--conflicts
2025-08-19 00:55:16,851 [ scc.config] DEBUG Found github.token
2025-08-19 00:55:16,851 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2025-08-19 00:55:16,851 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2025-08-19 00:55:16,856 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:55:16,858 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2025-08-19 00:55:16,873 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-08-19 00:55:16,873 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-08-19 00:55:16,873 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2025-08-19 00:55:16,874 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-19 00:55:16,874 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-19 00:55:16,877 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-19 00:55:16,882 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-08-19 00:55:17,093 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:17,303 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-19 00:55:17,304 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7'
2025-08-19 00:55:17,308 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-19 00:55:17,311 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#508](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/508/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/508/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2025-08-19 00:55:17,313 [ scc.config] DEBUG Found github.token
2025-08-19 00:55:17,314 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2025-08-19 00:55:17,314 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-19 00:55:17,353 [ scc.git] DEBUG Get sha1 of %s
2025-08-19 00:55:17,353 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:55:17,356 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-19 00:55:17,396 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-19 00:55:17,401 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb1dd013b50> has no local changes
2025-08-19 00:55:17,401 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#508 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/508/)'
2025-08-19 00:55:17,407 [ scc.git] DEBUG [detached HEAD 803d98e] merge master -Dorg -Ssuccess-only
2025-08-19 00:55:17,408 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-19 00:55:17,408 [ scc.repo] DEBUG ## PRs found:
2025-08-19 00:55:17,556 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:17,919 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2025-08-19 00:55:18,184 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:18,456 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2025-08-19 00:55:18,708 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:19,059 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-08-19 00:55:19,311 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:19,572 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-19 00:55:19,824 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:20,087 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-19 00:55:20,340 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:20,645 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-08-19 00:55:20,898 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:21,160 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2025-08-19 00:55:21,161 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-19 00:55:21,412 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:21,748 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2025-08-19 00:55:21,749 [ scc.repo] DEBUG # ... Include label: dependencies
2025-08-19 00:55:22,001 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:22,376 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-08-19 00:55:22,628 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:22,899 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-19 00:55:23,152 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:23,461 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-19 00:55:23,713 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:24,025 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-08-19 00:55:24,278 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:24,494 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2025-08-19 00:55:24,494 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-08-19 00:55:24,746 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:25,043 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2025-08-19 00:55:25,044 [ scc.repo] DEBUG # ... Include label: dependencies
2025-08-19 00:55:25,296 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:25,665 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-08-19 00:55:25,918 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:26,213 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-19 00:55:26,466 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:26,773 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-19 00:55:27,025 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:27,349 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-08-19 00:55:27,602 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:27,892 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2025-08-19 00:55:27,892 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-08-19 00:55:28,144 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:28,476 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2025-08-19 00:55:28,729 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:28,975 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2025-08-19 00:55:29,227 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:29,483 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2025-08-19 00:55:29,735 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:29,983 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2025-08-19 00:55:30,235 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:30,522 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2025-08-19 00:55:30,774 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:31,021 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2025-08-19 00:55:31,274 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:31,533 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2025-08-19 00:55:31,535 [ scc.repo] DEBUG ## Branches found:
2025-08-19 00:55:31,535 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-08-19 00:55:31,535 [ scc.git] DEBUG Get sha1 of %s
2025-08-19 00:55:31,535 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:55:31,538 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-19 00:55:31,540 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-19 00:55:31,540 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-19 00:55:31,543 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-19 00:55:31,546 [ scc.git] DEBUG Already up to date.
2025-08-19 00:55:31,546 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2025-08-19 00:55:31,830 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-08-19 00:55:31,830 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2025-08-19 00:55:31,834 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2025-08-19 00:55:32,108 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-08-19 00:55:32,108 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2025-08-19 00:55:32,112 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2025-08-19 00:55:32,389 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-08-19 00:55:32,389 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2025-08-19 00:55:32,393 [ scc.git] DEBUG ## Unique users: []
2025-08-19 00:55:32,393 [ scc.git] DEBUG Get sha1 of %s
2025-08-19 00:55:32,393 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:55:32,396 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2025-08-19 00:55:32,399 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:55:32,401 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2025-08-19 00:55:32,410 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-19 00:55:32,413 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2025-08-19 00:55:32,413 [ scc.git] DEBUG package.json | 2 +-
2025-08-19 00:55:32,413 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2025-08-19 00:55:32,416 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:32,614 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-19 00:55:32,614 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2025-08-19 00:55:32,618 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:55:32,620 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2025-08-19 00:55:32,630 [ scc.git] DEBUG Auto-merging package-lock.json
2025-08-19 00:55:32,630 [ scc.git] DEBUG Auto-merging package.json
2025-08-19 00:55:32,631 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-19 00:55:32,634 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2025-08-19 00:55:32,634 [ scc.git] DEBUG package.json | 2 +-
2025-08-19 00:55:32,634 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2025-08-19 00:55:32,866 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:33,075 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-19 00:55:33,076 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-08-19 00:55:33,080 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:55:33,082 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-08-19 00:55:33,091 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-19 00:55:33,093 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-08-19 00:55:33,094 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-08-19 00:55:33,328 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:33,548 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-19 00:55:33,549 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-19 00:55:33,590 [ scc.git] DEBUG Get sha1 of %s
2025-08-19 00:55:33,590 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:55:33,593 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-19 00:55:33,633 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-19 00:55:33,637 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb1dcd38090> has no local changes
2025-08-19 00:55:33,637 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#508 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/508/)'
2025-08-19 00:55:33,643 [ scc.git] DEBUG [detached HEAD 4ad7e06] merge master -Dorg -Ssuccess-only
2025-08-19 00:55:33,644 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-19 00:55:33,644 [ scc.repo] DEBUG ## PRs found:
2025-08-19 00:55:33,801 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:34,021 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 2
2025-08-19 00:55:34,022 [ scc.repo] DEBUG ## Branches found:
2025-08-19 00:55:34,022 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-08-19 00:55:34,022 [ scc.git] DEBUG Get sha1 of %s
2025-08-19 00:55:34,022 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:55:34,024 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-19 00:55:34,027 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-19 00:55:34,027 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-19 00:55:34,030 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-19 00:55:34,033 [ scc.git] DEBUG Already up to date.
2025-08-19 00:55:34,033 [ scc.git] DEBUG ## Unique users: []
2025-08-19 00:55:34,033 [ scc.git] DEBUG Get sha1 of %s
2025-08-19 00:55:34,033 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:55:34,035 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-19 00:55:34,074 [ scc.git] DEBUG Get sha1 of %s
2025-08-19 00:55:34,074 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:55:34,077 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-19 00:55:34,114 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-19 00:55:34,117 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb1dc446d50> has no local changes
2025-08-19 00:55:34,117 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Generated by OMERO-plugins-push#508 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/508/)'
2025-08-19 00:55:34,123 [ scc.git] DEBUG [detached HEAD 315e359] merge master -Dorg -Ssuccess-only
2025-08-19 00:55:34,124 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-19 00:55:34,124 [ scc.repo] DEBUG ## PRs found:
2025-08-19 00:55:34,274 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:34,579 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2025-08-19 00:55:34,832 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:35,108 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33 HTTP/1.1" 200 None
2025-08-19 00:55:35,361 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:35,660 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33/comments HTTP/1.1" 200 None
2025-08-19 00:55:35,913 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:36,202 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-08-19 00:55:36,455 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:36,724 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-19 00:55:36,976 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:37,226 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-19 00:55:37,479 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:37,811 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-08-19 00:55:38,064 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:38,319 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/1122baea98746effd4eb59deed25870f673ce3d3?per_page=1 HTTP/1.1" 200 None
2025-08-19 00:55:38,571 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:38,847 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-08-19 00:55:39,100 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:39,334 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/status HTTP/1.1" 200 None
2025-08-19 00:55:39,335 [ scc.repo] DEBUG - PR 33 jo-mueller 'Add roi to array functions'
2025-08-19 00:55:39,587 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:39,842 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2025-08-19 00:55:39,843 [ scc.repo] DEBUG ## Branches found:
2025-08-19 00:55:39,843 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-08-19 00:55:39,843 [ scc.git] DEBUG Get sha1 of %s
2025-08-19 00:55:39,843 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:55:39,846 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-19 00:55:39,849 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-19 00:55:39,849 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-19 00:55:39,852 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-19 00:55:39,855 [ scc.git] DEBUG Already up to date.
2025-08-19 00:55:39,855 [ scc.git] DEBUG Calling 'git fetch origin pull/33/head'
2025-08-19 00:55:40,138 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2025-08-19 00:55:40,138 [ scc.git] DEBUG * branch refs/pull/33/head -> FETCH_HEAD
2025-08-19 00:55:40,143 [ scc.git] DEBUG ## Unique users: []
2025-08-19 00:55:40,143 [ scc.git] DEBUG Get sha1 of %s
2025-08-19 00:55:40,143 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:55:40,146 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1122baea98746effd4eb59deed25870f673ce3d3'
2025-08-19 00:55:40,149 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:55:40,151 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 33 (Add roi to array functions) 1122baea98746effd4eb59deed25870f673ce3d3'
2025-08-19 00:55:40,160 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-19 00:55:40,163 [ scc.git] DEBUG setup.py | 4 +-
2025-08-19 00:55:40,163 [ scc.git] DEBUG src/omero_rois/__init__.py | 4 +
2025-08-19 00:55:40,163 [ scc.git] DEBUG src/omero_rois/library.py | 204 +++++++++++++++++++++++++++++++++++++++++++--
2025-08-19 00:55:40,163 [ scc.git] DEBUG 3 files changed, 203 insertions(+), 9 deletions(-)
2025-08-19 00:55:40,166 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:40,356 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-19 00:55:40,357 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-19 00:55:40,397 [ scc.git] DEBUG Get sha1 of %s
2025-08-19 00:55:40,397 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:55:40,399 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-19 00:55:40,439 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-19 00:55:40,443 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb1dce09c50> has no local changes
2025-08-19 00:55:40,443 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
Generated by OMERO-plugins-push#508 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/508/)'
2025-08-19 00:55:40,449 [ scc.git] DEBUG [detached HEAD 770b47e] merge master -Dorg -Ssuccess-only
2025-08-19 00:55:40,449 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-19 00:55:40,449 [ scc.repo] DEBUG ## PRs found:
2025-08-19 00:55:40,609 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:40,893 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2025-08-19 00:55:41,146 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:41,422 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2025-08-19 00:55:41,675 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:41,952 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2025-08-19 00:55:42,205 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:42,553 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-08-19 00:55:42,805 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:43,061 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-19 00:55:43,313 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:43,716 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-08-19 00:55:43,968 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:44,186 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2025-08-19 00:55:44,187 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2025-08-19 00:55:44,187 [ scc.repo] DEBUG ## Branches found:
2025-08-19 00:55:44,187 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-08-19 00:55:44,187 [ scc.git] DEBUG Get sha1 of %s
2025-08-19 00:55:44,187 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:55:44,190 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-19 00:55:44,192 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-19 00:55:44,192 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-19 00:55:44,195 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-19 00:55:44,198 [ scc.git] DEBUG Already up to date.
2025-08-19 00:55:44,198 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2025-08-19 00:55:44,489 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2025-08-19 00:55:44,489 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2025-08-19 00:55:44,494 [ scc.git] DEBUG ## Unique users: []
2025-08-19 00:55:44,494 [ scc.git] DEBUG Get sha1 of %s
2025-08-19 00:55:44,494 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:55:44,497 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-08-19 00:55:44,500 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:55:44,503 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-08-19 00:55:44,512 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2025-08-19 00:55:44,512 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2025-08-19 00:55:44,512 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2025-08-19 00:55:44,512 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2025-08-19 00:55:44,512 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2025-08-19 00:55:44,512 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2025-08-19 00:55:44,512 [ scc.git] DEBUG Auto-merging setup.py
2025-08-19 00:55:44,512 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2025-08-19 00:55:44,512 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-19 00:55:44,513 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-19 00:55:44,516 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2025-08-19 00:55:44,520 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2025-08-19 00:55:44,522 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:44,724 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-19 00:55:44,724 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-08-19 00:55:44,728 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2025-08-19 00:55:44,731 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#508](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/508/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/508/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_signup/signup_settings.py
- omero_signup/urls.py
- omero_signup/views.py
- setup.py
--conflicts
2025-08-19 00:55:44,733 [ scc.config] DEBUG Found github.token
2025-08-19 00:55:44,733 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2025-08-19 00:55:44,733 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-19 00:55:44,777 [ scc.git] DEBUG Get sha1 of %s
2025-08-19 00:55:44,777 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:55:44,779 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-19 00:55:44,820 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-19 00:55:44,824 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb1dcfe3750> has no local changes
2025-08-19 00:55:44,824 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#508 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/508/)'
2025-08-19 00:55:44,831 [ scc.git] DEBUG [detached HEAD 4a74f8d] merge master -Dorg -Ssuccess-only
2025-08-19 00:55:44,831 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-19 00:55:44,831 [ scc.repo] DEBUG ## PRs found:
2025-08-19 00:55:44,977 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:45,422 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2025-08-19 00:55:45,675 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:45,988 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/76 HTTP/1.1" 200 None
2025-08-19 00:55:46,241 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:46,559 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-08-19 00:55:46,812 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:47,073 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-19 00:55:47,325 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:47,571 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-19 00:55:47,823 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:48,064 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-08-19 00:55:48,316 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:48,528 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6?per_page=1 HTTP/1.1" 200 2
2025-08-19 00:55:48,528 [ scc.repo] DEBUG - PR 76 will-moore 'Run cli deps'
2025-08-19 00:55:48,780 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:49,046 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2025-08-19 00:55:49,299 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:49,559 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2025-08-19 00:55:49,811 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:50,117 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None
2025-08-19 00:55:50,369 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:50,637 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-19 00:55:50,889 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:51,151 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-19 00:55:51,403 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:51,710 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73 HTTP/1.1" 200 None
2025-08-19 00:55:51,962 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:52,220 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73/comments HTTP/1.1" 200 None
2025-08-19 00:55:52,473 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:52,717 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12 HTTP/1.1" 200 None
2025-08-19 00:55:52,969 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:53,217 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12/comments HTTP/1.1" 200 None
2025-08-19 00:55:53,470 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:53,816 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-08-19 00:55:54,068 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:54,290 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-19 00:55:54,542 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:54,756 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-08-19 00:55:55,008 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:55,218 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/425319051224e8481afc40083fd9b5db4bc99928?per_page=1 HTTP/1.1" 200 2
2025-08-19 00:55:55,219 [ scc.repo] DEBUG - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-08-19 00:55:55,219 [ scc.repo] DEBUG ## Branches found:
2025-08-19 00:55:55,219 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-08-19 00:55:55,219 [ scc.git] DEBUG Get sha1 of %s
2025-08-19 00:55:55,219 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:55:55,222 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-19 00:55:55,224 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-19 00:55:55,225 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-19 00:55:55,228 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-19 00:55:55,231 [ scc.git] DEBUG Already up to date.
2025-08-19 00:55:55,231 [ scc.git] DEBUG Calling 'git fetch origin pull/12/head'
2025-08-19 00:55:55,527 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-08-19 00:55:55,527 [ scc.git] DEBUG * branch refs/pull/12/head -> FETCH_HEAD
2025-08-19 00:55:55,531 [ scc.git] DEBUG Calling 'git fetch origin pull/76/head'
2025-08-19 00:55:55,845 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-08-19 00:55:55,845 [ scc.git] DEBUG * branch refs/pull/76/head -> FETCH_HEAD
2025-08-19 00:55:55,850 [ scc.git] DEBUG ## Unique users: []
2025-08-19 00:55:55,850 [ scc.git] DEBUG Get sha1 of %s
2025-08-19 00:55:55,850 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:55:55,852 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...425319051224e8481afc40083fd9b5db4bc99928'
2025-08-19 00:55:55,857 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:55:55,860 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 12 (IDR: use downloaded ansible templates & variables to configure infra) 425319051224e8481afc40083fd9b5db4bc99928'
2025-08-19 00:55:55,872 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-19 00:55:55,876 [ scc.git] DEBUG idr-compose.yml | 66 ++++++++++++++
2025-08-19 00:55:55,876 [ scc.git] DEBUG idr-haproxy.yml | 58 +++++++++++++
2025-08-19 00:55:55,876 [ scc.git] DEBUG idr/40-ansible.sh | 7 ++
2025-08-19 00:55:55,876 [ scc.git] DEBUG idr/70-reset-password.sh | 1 +
2025-08-19 00:55:55,877 [ scc.git] DEBUG idr/nginx/conf.d/default.conf | 1 +
2025-08-19 00:55:55,877 [ scc.git] DEBUG idr/nginx/conf.d/example_ssl.conf | 1 +
2025-08-19 00:55:55,877 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cache.conf | 53 +++++++++++
2025-08-19 00:55:55,877 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cachebuster.conf | 114 ++++++++++++++++++++++++
2025-08-19 00:55:55,877 [ scc.git] DEBUG idr/nginx/conf.d/proxy-default.conf | 135 +++++++++++++++++++++++++++++
2025-08-19 00:55:55,877 [ scc.git] DEBUG idr/nginx/conf.d/proxy-omeroreadwrite.conf | 115 ++++++++++++++++++++++++
2025-08-19 00:55:55,879 [ scc.git] DEBUG idr/nginx/conf.d/proxy-redirect.conf | 15 ++++
2025-08-19 00:55:55,879 [ scc.git] DEBUG idr/nginx/conf.d/proxy-upstream.conf | 13 +++
2025-08-19 00:55:55,879 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v0.conf | 26 ++++++
2025-08-19 00:55:55,879 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:55,879 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v1.conf | 30 +++++++
2025-08-19 00:55:55,879 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v2.conf | 30 +++++++
2025-08-19 00:55:55,879 [ scc.git] DEBUG idr/nginx/conf.d/proxy-websockets.conf | 6 ++
2025-08-19 00:55:55,879 [ scc.git] DEBUG idr/nginx/nginx.conf | 53 +++++++++++
2025-08-19 00:55:55,879 [ scc.git] DEBUG idr/omero/Dockerfile | 3 +
2025-08-19 00:55:55,879 [ scc.git] DEBUG idr/omero/playbook.yml | 41 +++++++++
2025-08-19 00:55:55,880 [ scc.git] DEBUG idr/redirect/Dockerfile | 6 ++
2025-08-19 00:55:55,880 [ scc.git] DEBUG idr/web/Dockerfile | 5 ++
2025-08-19 00:55:55,880 [ scc.git] DEBUG idr/web/playbook.yml | 45 ++++++++++
2025-08-19 00:55:55,880 [ scc.git] DEBUG 22 files changed, 824 insertions(+)
2025-08-19 00:55:55,880 [ scc.git] DEBUG create mode 100644 idr-compose.yml
2025-08-19 00:55:55,880 [ scc.git] DEBUG create mode 100644 idr-haproxy.yml
2025-08-19 00:55:55,880 [ scc.git] DEBUG create mode 100755 idr/40-ansible.sh
2025-08-19 00:55:55,880 [ scc.git] DEBUG create mode 100755 idr/70-reset-password.sh
2025-08-19 00:55:55,880 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/default.conf
2025-08-19 00:55:55,880 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/example_ssl.conf
2025-08-19 00:55:55,880 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cache.conf
2025-08-19 00:55:55,880 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cachebuster.conf
2025-08-19 00:55:55,880 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-default.conf
2025-08-19 00:55:55,880 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-omeroreadwrite.conf
2025-08-19 00:55:55,880 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-redirect.conf
2025-08-19 00:55:55,880 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-upstream.conf
2025-08-19 00:55:55,880 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v0.conf
2025-08-19 00:55:55,880 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v1.conf
2025-08-19 00:55:55,880 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v2.conf
2025-08-19 00:55:55,880 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-websockets.conf
2025-08-19 00:55:55,880 [ scc.git] DEBUG create mode 100644 idr/nginx/nginx.conf
2025-08-19 00:55:55,880 [ scc.git] DEBUG create mode 100644 idr/omero/Dockerfile
2025-08-19 00:55:55,880 [ scc.git] DEBUG create mode 100644 idr/omero/playbook.yml
2025-08-19 00:55:55,880 [ scc.git] DEBUG create mode 100644 idr/redirect/Dockerfile
2025-08-19 00:55:55,880 [ scc.git] DEBUG create mode 100644 idr/web/Dockerfile
2025-08-19 00:55:55,880 [ scc.git] DEBUG create mode 100644 idr/web/playbook.yml
2025-08-19 00:55:56,087 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-19 00:55:56,088 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-08-19 00:55:56,092 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:55:56,094 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 76 (Run cli deps) bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-08-19 00:55:56,104 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-19 00:55:56,107 [ scc.git] DEBUG docker | 1 +
2025-08-19 00:55:56,107 [ scc.git] DEBUG 1 file changed, 1 insertion(+)
2025-08-19 00:55:56,339 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:56,533 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-19 00:55:56,533 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-19 00:55:56,576 [ scc.git] DEBUG Get sha1 of %s
2025-08-19 00:55:56,576 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:55:56,578 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-19 00:55:56,619 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-19 00:55:56,623 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb1dc448450> has no local changes
2025-08-19 00:55:56,623 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
- PR 76 will-moore 'Run cli deps'
Generated by OMERO-plugins-push#508 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/508/)'
2025-08-19 00:55:56,630 [ scc.git] DEBUG [detached HEAD 655a0ae] merge master -Dorg -Ssuccess-only
2025-08-19 00:55:56,630 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-19 00:55:56,630 [ scc.repo] DEBUG ## PRs found:
2025-08-19 00:55:56,786 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:57,031 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 2
2025-08-19 00:55:57,031 [ scc.repo] DEBUG ## Branches found:
2025-08-19 00:55:57,031 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-08-19 00:55:57,031 [ scc.git] DEBUG Get sha1 of %s
2025-08-19 00:55:57,031 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:55:57,034 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-19 00:55:57,036 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-19 00:55:57,036 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-19 00:55:57,039 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-19 00:55:57,042 [ scc.git] DEBUG Already up to date.
2025-08-19 00:55:57,042 [ scc.git] DEBUG ## Unique users: []
2025-08-19 00:55:57,042 [ scc.git] DEBUG Get sha1 of %s
2025-08-19 00:55:57,042 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:55:57,044 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-19 00:55:57,086 [ scc.git] DEBUG Get sha1 of %s
2025-08-19 00:55:57,086 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:55:57,088 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-19 00:55:57,126 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-19 00:55:57,129 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb1dc48dfd0> has no local changes
2025-08-19 00:55:57,129 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Generated by OMERO-plugins-push#508 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/508/)'
2025-08-19 00:55:57,136 [ scc.git] DEBUG [detached HEAD 6d9484a] merge master -Dorg -Ssuccess-only
2025-08-19 00:55:57,136 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-19 00:55:57,136 [ scc.repo] DEBUG ## PRs found:
2025-08-19 00:55:57,283 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:57,553 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 2
2025-08-19 00:55:57,553 [ scc.repo] DEBUG ## Branches found:
2025-08-19 00:55:57,553 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-08-19 00:55:57,554 [ scc.git] DEBUG Get sha1 of %s
2025-08-19 00:55:57,554 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:55:57,556 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-19 00:55:57,558 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-19 00:55:57,558 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-19 00:55:57,561 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-19 00:55:57,569 [ scc.git] DEBUG Updating deab817..160d894
2025-08-19 00:55:57,805 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:58,253 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2025-08-19 00:55:58,255 [ scc.git] DEBUG ## Unique users: []
2025-08-19 00:55:58,255 [ scc.git] DEBUG Get sha1 of %s
2025-08-19 00:55:58,255 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:55:58,257 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-19 00:55:58,300 [ scc.git] DEBUG Get sha1 of %s
2025-08-19 00:55:58,300 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:55:58,302 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-19 00:55:58,344 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-19 00:55:58,349 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb1dd013750> has no local changes
2025-08-19 00:55:58,349 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Generated by OMERO-plugins-push#508 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/508/)'
2025-08-19 00:55:58,355 [ scc.git] DEBUG [detached HEAD b1a952e] merge master -Dorg -Ssuccess-only
2025-08-19 00:55:58,355 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-19 00:55:58,355 [ scc.git] INFO Overriding base-branch from master to main
2025-08-19 00:55:58,355 [ scc.repo] DEBUG ## PRs found:
2025-08-19 00:55:58,506 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:58,800 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2025-08-19 00:55:59,052 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:59,311 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/18 HTTP/1.1" 200 None
2025-08-19 00:55:59,563 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:55:59,832 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/18/comments HTTP/1.1" 200 None
2025-08-19 00:56:00,085 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:00,385 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec HTTP/1.1" 200 None
2025-08-19 00:56:00,637 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:00,944 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-19 00:56:01,197 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:01,439 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-19 00:56:01,691 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:02,041 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2025-08-19 00:56:02,293 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:02,558 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2025-08-19 00:56:02,810 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:03,043 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2025-08-19 00:56:03,295 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:03,602 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-08-19 00:56:03,855 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:04,089 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-19 00:56:04,342 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:04,662 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-08-19 00:56:04,915 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:05,127 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2025-08-19 00:56:05,128 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-08-19 00:56:05,128 [ scc.repo] DEBUG ## Branches found:
2025-08-19 00:56:05,128 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-08-19 00:56:05,128 [ scc.git] DEBUG Get sha1 of %s
2025-08-19 00:56:05,128 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:56:05,131 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2025-08-19 00:56:05,133 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-19 00:56:05,133 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2025-08-19 00:56:05,136 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2025-08-19 00:56:05,140 [ scc.git] DEBUG Already up to date.
2025-08-19 00:56:05,140 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2025-08-19 00:56:05,428 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-08-19 00:56:05,428 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2025-08-19 00:56:05,432 [ scc.git] DEBUG ## Unique users: []
2025-08-19 00:56:05,432 [ scc.git] DEBUG Get sha1 of %s
2025-08-19 00:56:05,432 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:56:05,434 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-08-19 00:56:05,438 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:56:05,440 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-08-19 00:56:05,449 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2025-08-19 00:56:05,449 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2025-08-19 00:56:05,449 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-19 00:56:05,449 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-19 00:56:05,452 [ scc.git] DEBUG Calling 'git reset --hard 8f3c31388de8a7c44f18a6f0e20ea41d35fae041'
2025-08-19 00:56:05,456 [ scc.git] DEBUG HEAD is now at 8f3c313 Merge pull request #17 from jburel/build
2025-08-19 00:56:05,459 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:05,649 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-19 00:56:05,650 [ scc.git] DEBUG Calling 'git merge-base 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-08-19 00:56:05,653 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..8f3c31388de8a7c44f18a6f0e20ea41d35fae041'
2025-08-19 00:56:05,656 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#508](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/508/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/508/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2025-08-19 00:56:05,658 [ scc.config] DEBUG Found github.token
2025-08-19 00:56:05,658 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2025-08-19 00:56:05,658 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-19 00:56:05,699 [ scc.git] DEBUG Get sha1 of %s
2025-08-19 00:56:05,699 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:56:05,702 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-19 00:56:05,742 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-19 00:56:05,746 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb1dce4c0d0> has no local changes
2025-08-19 00:56:05,746 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 18 will-moore 'Build' (status: failure)
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Already up to date.
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#508 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/508/)'
2025-08-19 00:56:05,753 [ scc.git] DEBUG [detached HEAD 23352eb] merge master -Dorg -Ssuccess-only
2025-08-19 00:56:05,753 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-19 00:56:05,753 [ scc.repo] DEBUG ## PRs found:
2025-08-19 00:56:05,902 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:06,113 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 2
2025-08-19 00:56:06,113 [ scc.repo] DEBUG ## Branches found:
2025-08-19 00:56:06,113 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-08-19 00:56:06,113 [ scc.git] DEBUG Get sha1 of %s
2025-08-19 00:56:06,113 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:56:06,115 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-19 00:56:06,118 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-19 00:56:06,118 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-19 00:56:06,121 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-19 00:56:06,124 [ scc.git] DEBUG Already up to date.
2025-08-19 00:56:06,124 [ scc.git] DEBUG ## Unique users: []
2025-08-19 00:56:06,124 [ scc.git] DEBUG Get sha1 of %s
2025-08-19 00:56:06,124 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:56:06,126 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-19 00:56:06,165 [ scc.git] DEBUG Get sha1 of %s
2025-08-19 00:56:06,165 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:56:06,167 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-19 00:56:06,206 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-19 00:56:06,210 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb1dcdc8f50> has no local changes
2025-08-19 00:56:06,210 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Generated by OMERO-plugins-push#508 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/508/)'
2025-08-19 00:56:06,216 [ scc.git] DEBUG [detached HEAD cf48612] merge master -Dorg -Ssuccess-only
2025-08-19 00:56:06,216 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-19 00:56:06,216 [ scc.repo] DEBUG ## PRs found:
2025-08-19 00:56:06,365 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:06,586 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 2
2025-08-19 00:56:06,587 [ scc.repo] DEBUG ## Branches found:
2025-08-19 00:56:06,587 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-08-19 00:56:06,587 [ scc.git] DEBUG Get sha1 of %s
2025-08-19 00:56:06,587 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:56:06,589 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-19 00:56:06,592 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-19 00:56:06,592 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-19 00:56:06,595 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-19 00:56:06,598 [ scc.git] DEBUG Already up to date.
2025-08-19 00:56:06,598 [ scc.git] DEBUG ## Unique users: []
2025-08-19 00:56:06,598 [ scc.git] DEBUG Get sha1 of %s
2025-08-19 00:56:06,598 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:56:06,600 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-19 00:56:06,640 [ scc.git] DEBUG Get sha1 of %s
2025-08-19 00:56:06,640 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:56:06,642 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-19 00:56:06,682 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-19 00:56:06,686 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb1dc4becd0> has no local changes
2025-08-19 00:56:06,686 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Generated by OMERO-plugins-push#508 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/508/)'
2025-08-19 00:56:06,693 [ scc.git] DEBUG [detached HEAD 2c9253b] merge master -Dorg -Ssuccess-only
2025-08-19 00:56:06,693 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-19 00:56:06,693 [ scc.repo] DEBUG ## PRs found:
2025-08-19 00:56:06,839 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:07,255 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 None
2025-08-19 00:56:07,508 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:07,796 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100 HTTP/1.1" 200 None
2025-08-19 00:56:08,048 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:08,303 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100/comments HTTP/1.1" 200 None
2025-08-19 00:56:08,555 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:08,859 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-08-19 00:56:09,111 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:09,385 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-19 00:56:09,638 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:09,924 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-08-19 00:56:10,176 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:10,388 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/statuses/b4abacf0cb9b7aee150761d320bdbb80762cd6e7?per_page=1 HTTP/1.1" 200 2
2025-08-19 00:56:10,388 [ scc.repo] DEBUG - PR 100 dominikl 'Run tests properly'
2025-08-19 00:56:10,388 [ scc.repo] DEBUG ## Branches found:
2025-08-19 00:56:10,388 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-08-19 00:56:10,388 [ scc.git] DEBUG Get sha1 of %s
2025-08-19 00:56:10,388 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:56:10,391 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-19 00:56:10,394 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-19 00:56:10,394 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-19 00:56:10,396 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-19 00:56:10,399 [ scc.git] DEBUG Already up to date.
2025-08-19 00:56:10,400 [ scc.git] DEBUG Calling 'git fetch origin pull/100/head'
2025-08-19 00:56:10,685 [ scc.git] DEBUG From https://github.com/ome/rOMERO-gateway
2025-08-19 00:56:10,685 [ scc.git] DEBUG * branch refs/pull/100/head -> FETCH_HEAD
2025-08-19 00:56:10,689 [ scc.git] DEBUG ## Unique users: []
2025-08-19 00:56:10,689 [ scc.git] DEBUG Get sha1 of %s
2025-08-19 00:56:10,689 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:56:10,691 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-08-19 00:56:10,694 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:56:10,697 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 100 (Run tests properly) b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-08-19 00:56:10,705 [ scc.git] DEBUG Auto-merging Dockerfile
2025-08-19 00:56:10,705 [ scc.git] DEBUG CONFLICT (content): Merge conflict in Dockerfile
2025-08-19 00:56:10,706 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-19 00:56:10,706 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-19 00:56:10,709 [ scc.git] DEBUG Calling 'git reset --hard 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-08-19 00:56:10,714 [ scc.git] DEBUG HEAD is now at 7b5d64d Merge pull request #106 from dominikl/add_examples_2
2025-08-19 00:56:10,716 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:10,900 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-19 00:56:10,900 [ scc.git] DEBUG Calling 'git merge-base 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-08-19 00:56:10,903 [ scc.git] DEBUG Calling 'git diff --name-only 8b424d2d21f70d07729c4da38a9241b9a9f483be..7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-08-19 00:56:10,906 [ scc.git] INFO - PR 100 dominikl 'Run tests properly'
Conflicting PR. Removed from build [OMERO-plugins-push#508](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/508/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/508/consoleText) for more details.
Possible conflicts:
- Upstream changes
- Dockerfile
--conflicts
2025-08-19 00:56:10,908 [ scc.config] DEBUG Found github.token
2025-08-19 00:56:10,908 [ scc.git] DEBUG Not adding comment to issue #100, already --conflicts.
2025-08-19 00:56:10,908 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-19 00:56:10,949 [ scc.git] DEBUG Get sha1 of %s
2025-08-19 00:56:10,949 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:56:10,951 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-19 00:56:10,991 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-19 00:56:10,995 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb1dce3e750> has no local changes
2025-08-19 00:56:10,995 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Generated by OMERO-plugins-push#508 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/508/)'
2025-08-19 00:56:11,002 [ scc.git] DEBUG [detached HEAD 59b8122] merge master -Dorg -Ssuccess-only
2025-08-19 00:56:11,002 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-19 00:56:11,002 [ scc.git] INFO Overriding base-branch from master to develop
2025-08-19 00:56:11,002 [ scc.repo] DEBUG ## PRs found:
2025-08-19 00:56:11,152 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:11,481 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2025-08-19 00:56:11,734 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:12,000 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223 HTTP/1.1" 200 None
2025-08-19 00:56:12,252 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:12,502 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223/comments HTTP/1.1" 200 None
2025-08-19 00:56:12,754 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:13,074 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-08-19 00:56:13,327 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:13,584 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-19 00:56:13,836 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:14,077 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-19 00:56:14,329 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:14,547 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-08-19 00:56:14,799 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:15,009 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/d8b2bbd6f5066de883a41ba5338662d60472b0d8?per_page=1 HTTP/1.1" 200 2
2025-08-19 00:56:15,010 [ scc.repo] DEBUG - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-08-19 00:56:15,262 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:15,516 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202 HTTP/1.1" 200 None
2025-08-19 00:56:15,768 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:16,034 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202/comments HTTP/1.1" 200 None
2025-08-19 00:56:16,286 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:16,504 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-08-19 00:56:16,757 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:17,014 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-19 00:56:17,267 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:17,580 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-08-19 00:56:17,832 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:18,062 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/1fd6030669613cdb8879cfe6395db8c820fdcf19?per_page=1 HTTP/1.1" 200 2
2025-08-19 00:56:18,062 [ scc.repo] DEBUG - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-08-19 00:56:18,314 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:18,620 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None
2025-08-19 00:56:18,872 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:19,116 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None
2025-08-19 00:56:19,369 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:19,643 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103 HTTP/1.1" 200 None
2025-08-19 00:56:19,895 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:20,180 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103/comments HTTP/1.1" 200 None
2025-08-19 00:56:20,182 [ scc.repo] DEBUG ## Branches found:
2025-08-19 00:56:20,182 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-08-19 00:56:20,182 [ scc.git] DEBUG Get sha1 of %s
2025-08-19 00:56:20,182 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:56:20,185 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2025-08-19 00:56:20,187 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-19 00:56:20,187 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2025-08-19 00:56:20,191 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2025-08-19 00:56:20,201 [ scc.git] DEBUG Updating 4b4c755..573db34
2025-08-19 00:56:20,433 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:20,850 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2025-08-19 00:56:21,103 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:21,561 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2025-08-19 00:56:21,563 [ scc.git] DEBUG Calling 'git fetch origin pull/202/head'
2025-08-19 00:56:21,861 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-08-19 00:56:21,861 [ scc.git] DEBUG * branch refs/pull/202/head -> FETCH_HEAD
2025-08-19 00:56:21,865 [ scc.git] DEBUG Calling 'git fetch origin pull/223/head'
2025-08-19 00:56:22,158 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-08-19 00:56:22,158 [ scc.git] DEBUG * branch refs/pull/223/head -> FETCH_HEAD
2025-08-19 00:56:22,162 [ scc.git] DEBUG ## Unique users: []
2025-08-19 00:56:22,162 [ scc.git] DEBUG Get sha1 of %s
2025-08-19 00:56:22,162 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:56:22,164 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-08-19 00:56:22,170 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:56:22,172 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 202 (Add Plate support to KeyVal_to_csv.py) 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-08-19 00:56:22,183 [ scc.git] DEBUG CONFLICT (modify/delete): omero/annotation_scripts/KeyVal_to_csv.py deleted in HEAD and modified in 1fd6030669613cdb8879cfe6395db8c820fdcf19. Version 1fd6030669613cdb8879cfe6395db8c820fdcf19 of omero/annotation_scripts/KeyVal_to_csv.py left in tree.
2025-08-19 00:56:22,184 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-19 00:56:22,185 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-19 00:56:22,187 [ scc.git] DEBUG Calling 'git reset --hard 573db340d5d1429fa17c7e486206948412a7c150'
2025-08-19 00:56:22,192 [ scc.git] DEBUG HEAD is now at 573db34 Bump version: 5.9.1 → 5.9.2.dev0
2025-08-19 00:56:22,194 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:22,380 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-19 00:56:22,381 [ scc.git] DEBUG Calling 'git merge-base 573db340d5d1429fa17c7e486206948412a7c150 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-08-19 00:56:22,386 [ scc.git] DEBUG Calling 'git diff --name-only a90f59802f6752ad74badec5c0c1d6b0c9c43b15..573db340d5d1429fa17c7e486206948412a7c150'
2025-08-19 00:56:22,391 [ scc.git] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Conflicting PR. Removed from build [OMERO-plugins-push#508](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/508/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/508/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero/annotation_scripts/KeyVal_to_csv.py
--conflicts
2025-08-19 00:56:22,393 [ scc.config] DEBUG Found github.token
2025-08-19 00:56:22,393 [ scc.git] DEBUG Not adding comment to issue #202, already --conflicts.
2025-08-19 00:56:22,393 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-08-19 00:56:22,397 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:56:22,400 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 223 (don't attempt ROI stats on big images) d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-08-19 00:56:22,410 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-19 00:56:22,413 [ scc.git] DEBUG omero/export_scripts/Batch_ROI_Export.py | 9 ++++++++-
2025-08-19 00:56:22,413 [ scc.git] DEBUG 1 file changed, 8 insertions(+), 1 deletion(-)
2025-08-19 00:56:22,633 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:22,841 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-19 00:56:22,842 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-19 00:56:22,884 [ scc.git] DEBUG Get sha1 of %s
2025-08-19 00:56:22,884 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-19 00:56:22,886 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-19 00:56:22,925 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-19 00:56:22,929 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb1dc487390> has no local changes
2025-08-19 00:56:22,929 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..573db34
Previously merged:
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#508 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/508/)'
2025-08-19 00:56:22,935 [ scc.git] DEBUG [detached HEAD b4714fc] merge master -Dorg -Ssuccess-only
2025-08-19 00:56:22,935 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-19 00:56:22,936 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-19 00:56:23,012 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2025-08-19 00:56:23,094 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:23,295 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-19 00:56:23,300 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2025-08-19 00:56:23,302 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2025-08-19 00:56:23,547 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:23,798 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-19 00:56:23,803 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2025-08-19 00:56:23,805 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2025-08-19 00:56:24,050 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:24,238 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-19 00:56:24,243 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2025-08-19 00:56:24,245 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2025-08-19 00:56:24,490 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:24,728 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-19 00:56:24,735 [ scc.config] DEBUG Found submodule.omero-figure.url
2025-08-19 00:56:24,980 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:25,170 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-19 00:56:25,175 [ scc.config] DEBUG Found submodule.omero-figure.branch
2025-08-19 00:56:25,177 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2025-08-19 00:56:25,422 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:25,624 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-19 00:56:25,629 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2025-08-19 00:56:25,631 [ scc.config] DEBUG Found submodule.omero-gallery.url
2025-08-19 00:56:25,876 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:26,074 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-19 00:56:26,079 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2025-08-19 00:56:26,081 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2025-08-19 00:56:26,326 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:26,510 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-19 00:56:26,515 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2025-08-19 00:56:26,517 [ scc.config] DEBUG Found submodule.omero-mapr.url
2025-08-19 00:56:26,762 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:26,960 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-19 00:56:26,965 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2025-08-19 00:56:26,967 [ scc.config] DEBUG Found submodule.omero-metadata.url
2025-08-19 00:56:27,212 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:27,430 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-19 00:56:27,435 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2025-08-19 00:56:27,437 [ scc.config] DEBUG Found submodule.omero-parade.url
2025-08-19 00:56:27,682 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:27,882 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-19 00:56:27,887 [ scc.config] DEBUG Found submodule.omero-parade.branch
2025-08-19 00:56:27,889 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2025-08-19 00:56:28,134 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:28,347 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-19 00:56:28,352 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2025-08-19 00:56:28,354 [ scc.config] DEBUG Found submodule.omero-rois.url
2025-08-19 00:56:28,599 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:28,791 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-19 00:56:28,798 [ scc.config] DEBUG Found submodule.omero-signup.url
2025-08-19 00:56:29,044 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:29,249 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-19 00:56:29,256 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2025-08-19 00:56:29,501 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:29,700 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-19 00:56:29,705 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2025-08-19 00:56:29,707 [ scc.config] DEBUG Found submodule.omero-upload.url
2025-08-19 00:56:29,952 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:30,144 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-19 00:56:30,151 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2025-08-19 00:56:30,396 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:30,597 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-19 00:56:30,604 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2025-08-19 00:56:30,849 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:31,049 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-19 00:56:31,054 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2025-08-19 00:56:31,056 [ scc.config] DEBUG Found submodule.omero-weberror.url
2025-08-19 00:56:31,301 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:31,510 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-19 00:56:31,515 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2025-08-19 00:56:31,517 [ scc.config] DEBUG Found submodule.omero-webtest.url
2025-08-19 00:56:31,763 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:31,948 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-19 00:56:31,953 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2025-08-19 00:56:31,955 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2025-08-19 00:56:32,202 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:32,407 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-19 00:56:32,413 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2025-08-19 00:56:32,415 [ scc.config] DEBUG Found submodule.scripts.url
2025-08-19 00:56:32,659 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-19 00:56:32,856 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-19 00:56:32,861 [ scc.config] DEBUG Found submodule.scripts.branch
2025-08-19 00:56:32,861 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-19 00:56:32,954 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb1dce4c410> has local changes
2025-08-19 00:56:32,954 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Repository: ome/omero-cli-render
Excluded PRs:
- PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Already up to date.
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
- PR 69 dominikl 'Fix help text for impo/export commands'
- PR 71 dominikl 'Escape slash character in image names'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 180 will-moore 'Register command' (status: failure)
- PR 174 will-moore 'Skip wells' (stage: draft)
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure)
- PR 170 will-moore 'Use ome zarr models py' (stage: draft)
- PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
- PR 167 dominikl 'Add extinfo command' (stage: draft)
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..f7eea7c
Previously merged:
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
Repository: ome/omero-figure
Excluded PRs:
- PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
- PR 619 will-moore 'OME-Zarr support' (stage: draft)
- PR 543 will-moore 'Plate well labels' (exclude comment)
Updating 9cc36cde..d2c6f5bc
Previously merged:
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 600 Rdornier 'Label on rois'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 612 will-moore 'Script version'
- PR 639 dependabot[bot] 'Bump vite from 6.2.6 to 6.2.7'
Conflicting PRs (not included):
- PR 616 Rdornier 'Fix labels around border'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 637 Rdornier 'Fix scalebar position'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..bb94cf8
Previously merged:
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
Conflicting PRs (not included):
- PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
Repository: ome/omero-signup
Already up to date.
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
- PR 76 will-moore 'Run cli deps'
Repository: ome/omero-upload
Already up to date.
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 18 will-moore 'Build' (status: failure)
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Already up to date.
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Repository: openmicroscopy/omero-webtest
Already up to date.
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..573db34
Previously merged:
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#508 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/508/)'
2025-08-19 00:56:32,967 [ scc.git] DEBUG [detached HEAD f603865] merge master -Dorg -Ssuccess-only
2025-08-19 00:56:32,967 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-)
2025-08-19 00:56:32,967 [ scc.merge] INFO Repository: ome/omero-plugins
2025-08-19 00:56:32,967 [ scc.merge] INFO Already up to date.
2025-08-19 00:56:32,967 [ scc.merge] INFO
2025-08-19 00:56:32,968 [ scc.merge] INFO Merged PRs:
2025-08-19 00:56:32,968 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2025-08-19 00:56:32,968 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2025-08-19 00:56:32,968 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2025-08-19 00:56:32,968 [ scc.merge] INFO
2025-08-19 00:56:32,968 [ scc.merge] INFO Repository: ome/minimal-omero-client
2025-08-19 00:56:32,968 [ scc.merge] INFO Already up to date.
2025-08-19 00:56:32,968 [ scc.merge] INFO
2025-08-19 00:56:32,968 [ scc.merge] INFO
2025-08-19 00:56:32,968 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2025-08-19 00:56:32,968 [ scc.merge] INFO Excluded PRs:
2025-08-19 00:56:32,968 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2025-08-19 00:56:32,968 [ scc.merge] INFO Already up to date.
2025-08-19 00:56:32,968 [ scc.merge] INFO
2025-08-19 00:56:32,968 [ scc.merge] INFO
2025-08-19 00:56:32,968 [ scc.merge] INFO Repository: ome/omero-cli-render
2025-08-19 00:56:32,968 [ scc.merge] INFO Excluded PRs:
2025-08-19 00:56:32,968 [ scc.merge] INFO - PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
2025-08-19 00:56:32,968 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2025-08-19 00:56:32,968 [ scc.merge] INFO Already up to date.
2025-08-19 00:56:32,968 [ scc.merge] INFO
2025-08-19 00:56:32,968 [ scc.merge] INFO Merged PRs:
2025-08-19 00:56:32,968 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2025-08-19 00:56:32,968 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2025-08-19 00:56:32,968 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2025-08-19 00:56:32,968 [ scc.merge] INFO
2025-08-19 00:56:32,968 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2025-08-19 00:56:32,968 [ scc.merge] INFO Excluded PRs:
2025-08-19 00:56:32,968 [ scc.merge] INFO - PR 180 will-moore 'Register command' (status: failure)
2025-08-19 00:56:32,968 [ scc.merge] INFO - PR 174 will-moore 'Skip wells' (stage: draft)
2025-08-19 00:56:32,968 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure)
2025-08-19 00:56:32,968 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft)
2025-08-19 00:56:32,968 [ scc.merge] INFO - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
2025-08-19 00:56:32,969 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft)
2025-08-19 00:56:32,969 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2025-08-19 00:56:32,969 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-08-19 00:56:32,969 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2025-08-19 00:56:32,969 [ scc.merge] INFO Updating 11d3587..f7eea7c
2025-08-19 00:56:32,969 [ scc.merge] INFO Previously merged:
2025-08-19 00:56:32,969 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2025-08-19 00:56:32,969 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2025-08-19 00:56:32,969 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2025-08-19 00:56:32,969 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2025-08-19 00:56:32,969 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2025-08-19 00:56:32,969 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2025-08-19 00:56:32,969 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-19 00:56:32,969 [ scc.merge] INFO
2025-08-19 00:56:32,969 [ scc.merge] INFO Merged PRs:
2025-08-19 00:56:32,969 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2025-08-19 00:56:32,969 [ scc.merge] INFO
2025-08-19 00:56:32,969 [ scc.merge] INFO Repository: ome/omero-figure
2025-08-19 00:56:32,969 [ scc.merge] INFO Excluded PRs:
2025-08-19 00:56:32,969 [ scc.merge] INFO - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
2025-08-19 00:56:32,969 [ scc.merge] INFO - PR 619 will-moore 'OME-Zarr support' (stage: draft)
2025-08-19 00:56:32,969 [ scc.merge] INFO - PR 543 will-moore 'Plate well labels' (exclude comment)
2025-08-19 00:56:32,969 [ scc.merge] INFO Updating 9cc36cde..d2c6f5bc
2025-08-19 00:56:32,969 [ scc.merge] INFO Previously merged:
2025-08-19 00:56:32,969 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2025-08-19 00:56:32,969 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2025-08-19 00:56:32,969 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2025-08-19 00:56:32,969 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2025-08-19 00:56:32,969 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-19 00:56:32,969 [ scc.merge] INFO
2025-08-19 00:56:32,969 [ scc.merge] INFO Merged PRs:
2025-08-19 00:56:32,969 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2025-08-19 00:56:32,969 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2025-08-19 00:56:32,969 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2025-08-19 00:56:32,970 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2025-08-19 00:56:32,970 [ scc.merge] INFO - PR 639 dependabot[bot] 'Bump vite from 6.2.6 to 6.2.7'
2025-08-19 00:56:32,970 [ scc.merge] INFO
2025-08-19 00:56:32,970 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-19 00:56:32,970 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2025-08-19 00:56:32,970 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2025-08-19 00:56:32,970 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2025-08-19 00:56:32,970 [ scc.merge] INFO
2025-08-19 00:56:32,970 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2025-08-19 00:56:32,970 [ scc.merge] INFO Already up to date.
2025-08-19 00:56:32,970 [ scc.merge] INFO
2025-08-19 00:56:32,970 [ scc.merge] INFO Merged PRs:
2025-08-19 00:56:32,970 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2025-08-19 00:56:32,970 [ scc.merge] INFO
2025-08-19 00:56:32,970 [ scc.merge] INFO Repository: ome/omero-gallery
2025-08-19 00:56:32,970 [ scc.merge] INFO Already up to date.
2025-08-19 00:56:32,970 [ scc.merge] INFO
2025-08-19 00:56:32,970 [ scc.merge] INFO Merged PRs:
2025-08-19 00:56:32,970 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2025-08-19 00:56:32,970 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2025-08-19 00:56:32,970 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2025-08-19 00:56:32,970 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2025-08-19 00:56:32,970 [ scc.merge] INFO
2025-08-19 00:56:32,970 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-19 00:56:32,970 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2025-08-19 00:56:32,970 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2025-08-19 00:56:32,970 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2025-08-19 00:56:32,970 [ scc.merge] INFO
2025-08-19 00:56:32,970 [ scc.merge] INFO Repository: ome/omero-iviewer
2025-08-19 00:56:32,970 [ scc.merge] INFO Excluded PRs:
2025-08-19 00:56:32,970 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
2025-08-19 00:56:32,970 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
2025-08-19 00:56:32,970 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2025-08-19 00:56:32,970 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2025-08-19 00:56:32,971 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure)
2025-08-19 00:56:32,971 [ scc.merge] INFO Updating 7a798ce..bb94cf8
2025-08-19 00:56:32,971 [ scc.merge] INFO Previously merged:
2025-08-19 00:56:32,971 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-19 00:56:32,971 [ scc.merge] INFO
2025-08-19 00:56:32,971 [ scc.merge] INFO Merged PRs:
2025-08-19 00:56:32,971 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix'
2025-08-19 00:56:32,971 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2025-08-19 00:56:32,971 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2025-08-19 00:56:32,971 [ scc.merge] INFO - PR 499 dependabot[bot] 'Bump nanoid and mocha'
2025-08-19 00:56:32,971 [ scc.merge] INFO
2025-08-19 00:56:32,971 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-19 00:56:32,971 [ scc.merge] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
2025-08-19 00:56:32,971 [ scc.merge] INFO
2025-08-19 00:56:32,971 [ scc.merge] INFO Repository: ome/omero-mapr
2025-08-19 00:56:32,971 [ scc.merge] INFO Excluded PRs:
2025-08-19 00:56:32,971 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2025-08-19 00:56:32,971 [ scc.merge] INFO Already up to date.
2025-08-19 00:56:32,971 [ scc.merge] INFO
2025-08-19 00:56:32,971 [ scc.merge] INFO Merged PRs:
2025-08-19 00:56:32,971 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient'
2025-08-19 00:56:32,971 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-19 00:56:32,971 [ scc.merge] INFO
2025-08-19 00:56:32,971 [ scc.merge] INFO Repository: ome/omero-metadata
2025-08-19 00:56:32,971 [ scc.merge] INFO Updating 3cd120c..55060a2
2025-08-19 00:56:32,971 [ scc.merge] INFO Previously merged:
2025-08-19 00:56:32,971 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-19 00:56:32,971 [ scc.merge] INFO
2025-08-19 00:56:32,971 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-19 00:56:32,971 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-08-19 00:56:32,971 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-08-19 00:56:32,971 [ scc.merge] INFO
2025-08-19 00:56:32,971 [ scc.merge] INFO Repository: ome/omero-parade
2025-08-19 00:56:32,971 [ scc.merge] INFO Excluded PRs:
2025-08-19 00:56:32,971 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2025-08-19 00:56:32,972 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2025-08-19 00:56:32,972 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2025-08-19 00:56:32,972 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2025-08-19 00:56:32,972 [ scc.merge] INFO Already up to date.
2025-08-19 00:56:32,972 [ scc.merge] INFO
2025-08-19 00:56:32,972 [ scc.merge] INFO Merged PRs:
2025-08-19 00:56:32,972 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-08-19 00:56:32,972 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-08-19 00:56:32,972 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-19 00:56:32,972 [ scc.merge] INFO
2025-08-19 00:56:32,972 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2025-08-19 00:56:32,972 [ scc.merge] INFO Already up to date.
2025-08-19 00:56:32,972 [ scc.merge] INFO
2025-08-19 00:56:32,972 [ scc.merge] INFO
2025-08-19 00:56:32,972 [ scc.merge] INFO Repository: ome/omero-rois
2025-08-19 00:56:32,972 [ scc.merge] INFO Excluded PRs:
2025-08-19 00:56:32,972 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-08-19 00:56:32,972 [ scc.merge] INFO Already up to date.
2025-08-19 00:56:32,972 [ scc.merge] INFO
2025-08-19 00:56:32,972 [ scc.merge] INFO Merged PRs:
2025-08-19 00:56:32,972 [ scc.merge] INFO - PR 33 jo-mueller 'Add roi to array functions'
2025-08-19 00:56:32,972 [ scc.merge] INFO
2025-08-19 00:56:32,972 [ scc.merge] INFO Repository: ome/omero-signup
2025-08-19 00:56:32,972 [ scc.merge] INFO Already up to date.
2025-08-19 00:56:32,972 [ scc.merge] INFO
2025-08-19 00:56:32,972 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-19 00:56:32,972 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2025-08-19 00:56:32,972 [ scc.merge] INFO
2025-08-19 00:56:32,972 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2025-08-19 00:56:32,972 [ scc.merge] INFO Excluded PRs:
2025-08-19 00:56:32,972 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2025-08-19 00:56:32,972 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
2025-08-19 00:56:32,972 [ scc.merge] INFO - PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
2025-08-19 00:56:32,972 [ scc.merge] INFO Already up to date.
2025-08-19 00:56:32,972 [ scc.merge] INFO
2025-08-19 00:56:32,973 [ scc.merge] INFO Merged PRs:
2025-08-19 00:56:32,973 [ scc.merge] INFO - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-08-19 00:56:32,973 [ scc.merge] INFO - PR 76 will-moore 'Run cli deps'
2025-08-19 00:56:32,973 [ scc.merge] INFO
2025-08-19 00:56:32,973 [ scc.merge] INFO Repository: ome/omero-upload
2025-08-19 00:56:32,973 [ scc.merge] INFO Already up to date.
2025-08-19 00:56:32,973 [ scc.merge] INFO
2025-08-19 00:56:32,973 [ scc.merge] INFO
2025-08-19 00:56:32,973 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2025-08-19 00:56:32,973 [ scc.merge] INFO Updating deab817..160d894
2025-08-19 00:56:32,973 [ scc.merge] INFO Previously merged:
2025-08-19 00:56:32,973 [ scc.merge] INFO - PR 20 jburel 'Build'
2025-08-19 00:56:32,973 [ scc.merge] INFO
2025-08-19 00:56:32,973 [ scc.merge] INFO
2025-08-19 00:56:32,973 [ scc.merge] INFO Repository: ome/omero-web-zarr
2025-08-19 00:56:32,973 [ scc.merge] INFO Excluded PRs:
2025-08-19 00:56:32,973 [ scc.merge] INFO - PR 18 will-moore 'Build' (status: failure)
2025-08-19 00:56:32,973 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2025-08-19 00:56:32,973 [ scc.merge] INFO Already up to date.
2025-08-19 00:56:32,973 [ scc.merge] INFO
2025-08-19 00:56:32,973 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-19 00:56:32,973 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-08-19 00:56:32,973 [ scc.merge] INFO
2025-08-19 00:56:32,973 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2025-08-19 00:56:32,973 [ scc.merge] INFO Already up to date.
2025-08-19 00:56:32,973 [ scc.merge] INFO
2025-08-19 00:56:32,973 [ scc.merge] INFO
2025-08-19 00:56:32,973 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2025-08-19 00:56:32,973 [ scc.merge] INFO Already up to date.
2025-08-19 00:56:32,973 [ scc.merge] INFO
2025-08-19 00:56:32,973 [ scc.merge] INFO
2025-08-19 00:56:32,973 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2025-08-19 00:56:32,973 [ scc.merge] INFO Already up to date.
2025-08-19 00:56:32,973 [ scc.merge] INFO
2025-08-19 00:56:32,973 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-19 00:56:32,974 [ scc.merge] INFO - PR 100 dominikl 'Run tests properly'
2025-08-19 00:56:32,974 [ scc.merge] INFO
2025-08-19 00:56:32,974 [ scc.merge] INFO Repository: ome/scripts
2025-08-19 00:56:32,974 [ scc.merge] INFO Excluded PRs:
2025-08-19 00:56:32,974 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
2025-08-19 00:56:32,974 [ scc.merge] INFO - PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
2025-08-19 00:56:32,974 [ scc.merge] INFO Updating 4b4c755..573db34
2025-08-19 00:56:32,974 [ scc.merge] INFO Previously merged:
2025-08-19 00:56:32,974 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2025-08-19 00:56:32,974 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2025-08-19 00:56:32,974 [ scc.merge] INFO
2025-08-19 00:56:32,974 [ scc.merge] INFO Merged PRs:
2025-08-19 00:56:32,974 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-08-19 00:56:32,974 [ scc.merge] INFO
2025-08-19 00:56:32,974 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-19 00:56:32,974 [ scc.merge] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-08-19 00:56:32,974 [ scc.merge] INFO
2025-08-19 00:56:32,974 [ scc.merge] DEBUG Cleaning remote branches created for merging
2025-08-19 00:56:32,974 [ scc.git] DEBUG Calling 'git remote'
2025-08-19 00:56:32,976 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2025-08-19 00:56:32,976 [ scc.git] DEBUG Calling 'git remote'
2025-08-19 00:56:32,979 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-19 00:56:32,979 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2025-08-19 00:56:32,979 [ scc.git] DEBUG Calling 'git remote'
2025-08-19 00:56:32,981 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-19 00:56:32,981 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2025-08-19 00:56:32,981 [ scc.git] DEBUG Calling 'git remote'
2025-08-19 00:56:32,983 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-19 00:56:32,983 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2025-08-19 00:56:32,983 [ scc.git] DEBUG Calling 'git remote'
2025-08-19 00:56:32,985 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-19 00:56:32,986 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2025-08-19 00:56:32,986 [ scc.git] DEBUG Calling 'git remote'
2025-08-19 00:56:32,988 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-19 00:56:32,988 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2025-08-19 00:56:32,988 [ scc.git] DEBUG Calling 'git remote'
2025-08-19 00:56:32,990 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-19 00:56:32,990 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2025-08-19 00:56:32,990 [ scc.git] DEBUG Calling 'git remote'
2025-08-19 00:56:32,992 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-19 00:56:32,992 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2025-08-19 00:56:32,992 [ scc.git] DEBUG Calling 'git remote'
2025-08-19 00:56:32,995 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-19 00:56:32,995 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2025-08-19 00:56:32,995 [ scc.git] DEBUG Calling 'git remote'
2025-08-19 00:56:32,997 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-19 00:56:32,997 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-08-19 00:56:32,997 [ scc.git] DEBUG Calling 'git remote'
2025-08-19 00:56:32,999 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-19 00:56:32,999 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-08-19 00:56:32,999 [ scc.git] DEBUG Calling 'git remote'
2025-08-19 00:56:33,002 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-19 00:56:33,002 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-08-19 00:56:33,002 [ scc.git] DEBUG Calling 'git remote'
2025-08-19 00:56:33,004 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-19 00:56:33,004 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-08-19 00:56:33,004 [ scc.git] DEBUG Calling 'git remote'
2025-08-19 00:56:33,006 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-19 00:56:33,006 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-08-19 00:56:33,006 [ scc.git] DEBUG Calling 'git remote'
2025-08-19 00:56:33,009 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-19 00:56:33,009 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-08-19 00:56:33,009 [ scc.git] DEBUG Calling 'git remote'
2025-08-19 00:56:33,011 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-19 00:56:33,011 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-08-19 00:56:33,011 [ scc.git] DEBUG Calling 'git remote'
2025-08-19 00:56:33,013 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-19 00:56:33,013 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-08-19 00:56:33,013 [ scc.git] DEBUG Calling 'git remote'
2025-08-19 00:56:33,015 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-19 00:56:33,016 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-08-19 00:56:33,016 [ scc.git] DEBUG Calling 'git remote'
2025-08-19 00:56:33,018 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-19 00:56:33,018 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-08-19 00:56:33,018 [ scc.git] DEBUG Calling 'git remote'
2025-08-19 00:56:33,020 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-19 00:56:33,020 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-08-19 00:56:33,020 [ scc.git] DEBUG Calling 'git remote'
2025-08-19 00:56:33,022 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-19 00:56:33,022 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-08-19 00:56:33,022 [ scc.git] DEBUG Calling 'git remote'
2025-08-19 00:56:33,025 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-19 00:56:33,025 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-08-19 00:56:33,025 [ scc.git] DEBUG Calling 'git remote'
2025-08-19 00:56:33,027 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.10.4-SNAPSHOT
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD d958435] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798ce
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD f5eff08] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2025-08-19 00:57:23,337 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2025-08-19 00:57:33,506 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2025-08-19 00:57:36,118 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-08-19 00:57:41,249 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-08-19 00:58:25,914 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
[Pipeline] archiveArtifacts
Archiving artifacts
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: SUCCESS
![[Jenkins]](/jenkins/static/9161e9ff/images/svgs/logo.svg){kind=logo}
