Skipping 235 KB..
Full LogTestTestTestTestTestTestTestTestTestTestTestTestTest
2025-09-02 00:48:17,424 [ scc.git] DEBUG [detached HEAD 3ed50f5] merge master -Dorg -Ssuccess-only
2025-09-02 00:48:17,425 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-02 00:48:17,425 [ scc.repo] DEBUG ## PRs found:
2025-09-02 00:48:17,579 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:17,899 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None
2025-09-02 00:48:18,152 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:18,429 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None
2025-09-02 00:48:18,682 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:18,944 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None
2025-09-02 00:48:19,197 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:19,533 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-09-02 00:48:19,786 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:20,069 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-02 00:48:20,321 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:20,541 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-09-02 00:48:20,793 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:21,015 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2
2025-09-02 00:48:21,015 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-09-02 00:48:21,267 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:21,547 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None
2025-09-02 00:48:21,799 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:22,045 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None
2025-09-02 00:48:22,297 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:22,605 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-09-02 00:48:22,858 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:23,100 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-02 00:48:23,352 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:23,597 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-09-02 00:48:23,849 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:24,084 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2025-09-02 00:48:24,084 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-09-02 00:48:24,084 [ scc.repo] DEBUG ## Branches found:
2025-09-02 00:48:24,084 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-09-02 00:48:24,084 [ scc.git] DEBUG Get sha1 of %s
2025-09-02 00:48:24,085 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:48:24,087 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-02 00:48:24,090 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-02 00:48:24,090 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-02 00:48:24,093 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-02 00:48:24,102 [ scc.git] DEBUG Updating 3cd120c..55060a2
2025-09-02 00:48:24,337 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:24,779 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2025-09-02 00:48:24,780 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2025-09-02 00:48:25,071 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-09-02 00:48:25,071 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2025-09-02 00:48:25,075 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2025-09-02 00:48:25,357 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-09-02 00:48:25,357 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2025-09-02 00:48:25,362 [ scc.git] DEBUG ## Unique users: []
2025-09-02 00:48:25,362 [ scc.git] DEBUG Get sha1 of %s
2025-09-02 00:48:25,362 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:48:25,364 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-09-02 00:48:25,369 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:48:25,371 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-09-02 00:48:25,385 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2025-09-02 00:48:25,385 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2025-09-02 00:48:25,385 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-09-02 00:48:25,385 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-09-02 00:48:25,385 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-09-02 00:48:25,386 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-09-02 00:48:25,389 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-09-02 00:48:25,393 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-09-02 00:48:25,396 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:25,590 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-02 00:48:25,590 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-09-02 00:48:25,595 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501'
2025-09-02 00:48:25,599 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#523](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/523/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/523/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/cli.py
- src/omero_metadata/populate.py
--conflicts
2025-09-02 00:48:25,601 [ scc.config] DEBUG Found github.token
2025-09-02 00:48:25,601 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2025-09-02 00:48:25,601 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2025-09-02 00:48:25,606 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:48:25,608 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2025-09-02 00:48:25,623 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-09-02 00:48:25,623 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-09-02 00:48:25,623 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2025-09-02 00:48:25,624 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-09-02 00:48:25,624 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-09-02 00:48:25,628 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-09-02 00:48:25,633 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-09-02 00:48:25,842 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:26,059 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-02 00:48:26,060 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7'
2025-09-02 00:48:26,065 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501'
2025-09-02 00:48:26,068 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#523](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/523/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/523/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2025-09-02 00:48:26,071 [ scc.config] DEBUG Found github.token
2025-09-02 00:48:26,071 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2025-09-02 00:48:26,071 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-02 00:48:26,113 [ scc.git] DEBUG Get sha1 of %s
2025-09-02 00:48:26,113 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:48:26,116 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-02 00:48:26,156 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-02 00:48:26,161 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe7fa12f150> has no local changes
2025-09-02 00:48:26,161 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#523 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/523/)'
2025-09-02 00:48:26,168 [ scc.git] DEBUG [detached HEAD ed2caae] merge master -Dorg -Ssuccess-only
2025-09-02 00:48:26,169 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-02 00:48:26,169 [ scc.repo] DEBUG ## PRs found:
2025-09-02 00:48:26,312 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:26,659 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2025-09-02 00:48:26,924 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:27,225 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2025-09-02 00:48:27,478 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:27,801 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-09-02 00:48:28,054 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:28,363 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-02 00:48:28,616 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:28,895 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-02 00:48:29,147 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:29,485 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-09-02 00:48:29,737 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:29,948 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2025-09-02 00:48:29,949 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-02 00:48:30,201 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:30,465 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2025-09-02 00:48:30,466 [ scc.repo] DEBUG # ... Include label: dependencies
2025-09-02 00:48:30,718 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:31,057 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-09-02 00:48:31,310 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:31,643 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-02 00:48:31,896 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:32,200 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-02 00:48:32,452 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:32,774 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-09-02 00:48:33,027 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:33,242 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2025-09-02 00:48:33,242 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-09-02 00:48:33,494 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:33,791 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2025-09-02 00:48:33,792 [ scc.repo] DEBUG # ... Include label: dependencies
2025-09-02 00:48:34,044 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:34,398 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-09-02 00:48:34,651 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:34,961 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-02 00:48:35,213 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:35,539 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-02 00:48:35,792 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:36,038 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-09-02 00:48:36,290 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:36,507 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2025-09-02 00:48:36,508 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-09-02 00:48:36,759 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:37,026 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2025-09-02 00:48:37,278 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:37,557 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2025-09-02 00:48:37,809 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:38,060 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2025-09-02 00:48:38,313 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:38,597 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2025-09-02 00:48:38,849 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:39,097 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2025-09-02 00:48:39,350 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:39,614 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2025-09-02 00:48:39,867 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:40,133 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2025-09-02 00:48:40,135 [ scc.repo] DEBUG ## Branches found:
2025-09-02 00:48:40,135 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-09-02 00:48:40,135 [ scc.git] DEBUG Get sha1 of %s
2025-09-02 00:48:40,135 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:48:40,138 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-02 00:48:40,140 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-02 00:48:40,140 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-02 00:48:40,143 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-02 00:48:40,147 [ scc.git] DEBUG Already up to date.
2025-09-02 00:48:40,147 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2025-09-02 00:48:40,428 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-09-02 00:48:40,428 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2025-09-02 00:48:40,433 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2025-09-02 00:48:40,713 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-09-02 00:48:40,714 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2025-09-02 00:48:40,718 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2025-09-02 00:48:40,998 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-09-02 00:48:40,998 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2025-09-02 00:48:41,002 [ scc.git] DEBUG ## Unique users: []
2025-09-02 00:48:41,002 [ scc.git] DEBUG Get sha1 of %s
2025-09-02 00:48:41,002 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:48:41,005 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2025-09-02 00:48:41,008 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:48:41,010 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2025-09-02 00:48:41,019 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-02 00:48:41,022 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2025-09-02 00:48:41,023 [ scc.git] DEBUG package.json | 2 +-
2025-09-02 00:48:41,023 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2025-09-02 00:48:41,025 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:41,224 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-02 00:48:41,225 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2025-09-02 00:48:41,228 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:48:41,230 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2025-09-02 00:48:41,241 [ scc.git] DEBUG Auto-merging package-lock.json
2025-09-02 00:48:41,241 [ scc.git] DEBUG Auto-merging package.json
2025-09-02 00:48:41,242 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-02 00:48:41,246 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2025-09-02 00:48:41,246 [ scc.git] DEBUG package.json | 2 +-
2025-09-02 00:48:41,246 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2025-09-02 00:48:41,477 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:41,685 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-02 00:48:41,685 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-09-02 00:48:41,689 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:48:41,692 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-09-02 00:48:41,701 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-02 00:48:41,704 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-09-02 00:48:41,704 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-09-02 00:48:41,937 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:42,158 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-02 00:48:42,159 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-02 00:48:42,201 [ scc.git] DEBUG Get sha1 of %s
2025-09-02 00:48:42,201 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:48:42,204 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-02 00:48:42,245 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-02 00:48:42,249 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe7fa035a90> has no local changes
2025-09-02 00:48:42,249 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#523 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/523/)'
2025-09-02 00:48:42,256 [ scc.git] DEBUG [detached HEAD bf5452d] merge master -Dorg -Ssuccess-only
2025-09-02 00:48:42,256 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-02 00:48:42,256 [ scc.repo] DEBUG ## PRs found:
2025-09-02 00:48:42,411 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:42,623 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 2
2025-09-02 00:48:42,623 [ scc.repo] DEBUG ## Branches found:
2025-09-02 00:48:42,623 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-09-02 00:48:42,623 [ scc.git] DEBUG Get sha1 of %s
2025-09-02 00:48:42,623 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:48:42,626 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-02 00:48:42,628 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-02 00:48:42,629 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-02 00:48:42,632 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-02 00:48:42,635 [ scc.git] DEBUG Already up to date.
2025-09-02 00:48:42,635 [ scc.git] DEBUG ## Unique users: []
2025-09-02 00:48:42,635 [ scc.git] DEBUG Get sha1 of %s
2025-09-02 00:48:42,635 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:48:42,637 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-02 00:48:42,678 [ scc.git] DEBUG Get sha1 of %s
2025-09-02 00:48:42,678 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:48:42,681 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-02 00:48:42,722 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-02 00:48:42,725 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe7e9f20c50> has no local changes
2025-09-02 00:48:42,726 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Generated by OMERO-plugins-push#523 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/523/)'
2025-09-02 00:48:42,732 [ scc.git] DEBUG [detached HEAD 8aaca97] merge master -Dorg -Ssuccess-only
2025-09-02 00:48:42,732 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-02 00:48:42,732 [ scc.repo] DEBUG ## PRs found:
2025-09-02 00:48:42,876 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:43,168 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2025-09-02 00:48:43,421 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:43,699 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33 HTTP/1.1" 200 None
2025-09-02 00:48:43,951 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:44,185 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33/comments HTTP/1.1" 200 None
2025-09-02 00:48:44,438 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:44,763 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-09-02 00:48:45,016 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:45,283 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-02 00:48:45,535 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:45,810 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-02 00:48:46,062 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:46,349 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-09-02 00:48:46,602 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:46,815 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/1122baea98746effd4eb59deed25870f673ce3d3?per_page=1 HTTP/1.1" 200 None
2025-09-02 00:48:47,068 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:47,338 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-09-02 00:48:47,591 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:47,805 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/status HTTP/1.1" 200 None
2025-09-02 00:48:47,805 [ scc.repo] DEBUG - PR 33 jo-mueller 'Add roi to array functions'
2025-09-02 00:48:48,057 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:48,340 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2025-09-02 00:48:48,340 [ scc.repo] DEBUG ## Branches found:
2025-09-02 00:48:48,340 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-09-02 00:48:48,341 [ scc.git] DEBUG Get sha1 of %s
2025-09-02 00:48:48,341 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:48:48,343 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-02 00:48:48,346 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-02 00:48:48,346 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-02 00:48:48,349 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-02 00:48:48,352 [ scc.git] DEBUG Already up to date.
2025-09-02 00:48:48,352 [ scc.git] DEBUG Calling 'git fetch origin pull/33/head'
2025-09-02 00:48:48,649 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2025-09-02 00:48:48,649 [ scc.git] DEBUG * branch refs/pull/33/head -> FETCH_HEAD
2025-09-02 00:48:48,653 [ scc.git] DEBUG ## Unique users: []
2025-09-02 00:48:48,653 [ scc.git] DEBUG Get sha1 of %s
2025-09-02 00:48:48,653 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:48:48,655 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1122baea98746effd4eb59deed25870f673ce3d3'
2025-09-02 00:48:48,659 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:48:48,661 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 33 (Add roi to array functions) 1122baea98746effd4eb59deed25870f673ce3d3'
2025-09-02 00:48:48,670 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-02 00:48:48,673 [ scc.git] DEBUG setup.py | 4 +-
2025-09-02 00:48:48,673 [ scc.git] DEBUG src/omero_rois/__init__.py | 4 +
2025-09-02 00:48:48,673 [ scc.git] DEBUG src/omero_rois/library.py | 204 +++++++++++++++++++++++++++++++++++++++++++--
2025-09-02 00:48:48,673 [ scc.git] DEBUG 3 files changed, 203 insertions(+), 9 deletions(-)
2025-09-02 00:48:48,676 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:48,864 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-02 00:48:48,865 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-02 00:48:48,907 [ scc.git] DEBUG Get sha1 of %s
2025-09-02 00:48:48,907 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:48:48,909 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-02 00:48:48,950 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-02 00:48:48,954 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe7fa13c790> has no local changes
2025-09-02 00:48:48,954 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
Generated by OMERO-plugins-push#523 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/523/)'
2025-09-02 00:48:48,960 [ scc.git] DEBUG [detached HEAD 4e94c76] merge master -Dorg -Ssuccess-only
2025-09-02 00:48:48,960 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-02 00:48:48,961 [ scc.repo] DEBUG ## PRs found:
2025-09-02 00:48:49,117 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:49,445 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2025-09-02 00:48:49,697 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:49,959 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2025-09-02 00:48:50,211 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:50,473 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2025-09-02 00:48:50,725 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:51,074 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-09-02 00:48:51,326 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:51,579 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-02 00:48:51,832 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:52,166 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-09-02 00:48:52,419 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:52,665 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2025-09-02 00:48:52,665 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2025-09-02 00:48:52,665 [ scc.repo] DEBUG ## Branches found:
2025-09-02 00:48:52,665 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-09-02 00:48:52,665 [ scc.git] DEBUG Get sha1 of %s
2025-09-02 00:48:52,666 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:48:52,668 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-02 00:48:52,671 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-02 00:48:52,671 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-02 00:48:52,674 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-02 00:48:52,677 [ scc.git] DEBUG Already up to date.
2025-09-02 00:48:52,677 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2025-09-02 00:48:52,955 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2025-09-02 00:48:52,955 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2025-09-02 00:48:52,960 [ scc.git] DEBUG ## Unique users: []
2025-09-02 00:48:52,960 [ scc.git] DEBUG Get sha1 of %s
2025-09-02 00:48:52,960 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:48:52,962 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-09-02 00:48:52,966 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:48:52,968 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-09-02 00:48:52,978 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2025-09-02 00:48:52,978 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2025-09-02 00:48:52,978 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2025-09-02 00:48:52,978 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2025-09-02 00:48:52,978 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2025-09-02 00:48:52,978 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2025-09-02 00:48:52,978 [ scc.git] DEBUG Auto-merging setup.py
2025-09-02 00:48:52,978 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2025-09-02 00:48:52,978 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-09-02 00:48:52,978 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-09-02 00:48:52,981 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2025-09-02 00:48:52,986 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2025-09-02 00:48:52,988 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:53,185 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-02 00:48:53,186 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-09-02 00:48:53,189 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2025-09-02 00:48:53,192 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#523](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/523/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/523/consoleText) for more details.
Possible conflicts:
- Upstream changes
- setup.py
- omero_signup/views.py
- omero_signup/urls.py
- omero_signup/signup_settings.py
--conflicts
2025-09-02 00:48:53,195 [ scc.config] DEBUG Found github.token
2025-09-02 00:48:53,195 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2025-09-02 00:48:53,195 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-02 00:48:53,236 [ scc.git] DEBUG Get sha1 of %s
2025-09-02 00:48:53,237 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:48:53,239 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-02 00:48:53,279 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-02 00:48:53,282 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe7e9f285d0> has no local changes
2025-09-02 00:48:53,282 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#523 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/523/)'
2025-09-02 00:48:53,289 [ scc.git] DEBUG [detached HEAD c1418a2] merge master -Dorg -Ssuccess-only
2025-09-02 00:48:53,289 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-02 00:48:53,289 [ scc.repo] DEBUG ## PRs found:
2025-09-02 00:48:53,438 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:53,786 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2025-09-02 00:48:54,039 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:54,285 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/76 HTTP/1.1" 200 None
2025-09-02 00:48:54,537 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:54,860 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-09-02 00:48:55,112 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:55,418 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-02 00:48:55,670 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:55,930 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-02 00:48:56,183 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:56,506 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-09-02 00:48:56,758 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:56,957 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6?per_page=1 HTTP/1.1" 200 2
2025-09-02 00:48:56,957 [ scc.repo] DEBUG - PR 76 will-moore 'Run cli deps'
2025-09-02 00:48:57,209 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:57,502 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2025-09-02 00:48:57,754 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:58,015 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2025-09-02 00:48:58,267 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:58,618 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None
2025-09-02 00:48:58,870 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:59,160 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-02 00:48:59,413 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:48:59,712 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-02 00:48:59,964 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:00,256 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73 HTTP/1.1" 200 None
2025-09-02 00:49:00,508 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:00,786 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73/comments HTTP/1.1" 200 None
2025-09-02 00:49:01,039 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:01,300 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12 HTTP/1.1" 200 None
2025-09-02 00:49:01,552 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:01,793 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12/comments HTTP/1.1" 200 None
2025-09-02 00:49:02,045 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:02,373 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-09-02 00:49:02,625 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:02,903 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-02 00:49:03,155 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:03,394 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-09-02 00:49:03,646 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:03,874 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/425319051224e8481afc40083fd9b5db4bc99928?per_page=1 HTTP/1.1" 200 2
2025-09-02 00:49:03,874 [ scc.repo] DEBUG - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-09-02 00:49:03,874 [ scc.repo] DEBUG ## Branches found:
2025-09-02 00:49:03,874 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-09-02 00:49:03,875 [ scc.git] DEBUG Get sha1 of %s
2025-09-02 00:49:03,875 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:49:03,877 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-02 00:49:03,880 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-02 00:49:03,880 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-02 00:49:03,883 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-02 00:49:03,886 [ scc.git] DEBUG Already up to date.
2025-09-02 00:49:03,886 [ scc.git] DEBUG Calling 'git fetch origin pull/12/head'
2025-09-02 00:49:04,175 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-09-02 00:49:04,175 [ scc.git] DEBUG * branch refs/pull/12/head -> FETCH_HEAD
2025-09-02 00:49:04,180 [ scc.git] DEBUG Calling 'git fetch origin pull/76/head'
2025-09-02 00:49:04,460 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-09-02 00:49:04,460 [ scc.git] DEBUG * branch refs/pull/76/head -> FETCH_HEAD
2025-09-02 00:49:04,464 [ scc.git] DEBUG ## Unique users: []
2025-09-02 00:49:04,464 [ scc.git] DEBUG Get sha1 of %s
2025-09-02 00:49:04,464 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:49:04,467 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...425319051224e8481afc40083fd9b5db4bc99928'
2025-09-02 00:49:04,471 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:49:04,473 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 12 (IDR: use downloaded ansible templates & variables to configure infra) 425319051224e8481afc40083fd9b5db4bc99928'
2025-09-02 00:49:04,486 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-02 00:49:04,490 [ scc.git] DEBUG idr-compose.yml | 66 ++++++++++++++
2025-09-02 00:49:04,490 [ scc.git] DEBUG idr-haproxy.yml | 58 +++++++++++++
2025-09-02 00:49:04,490 [ scc.git] DEBUG idr/40-ansible.sh | 7 ++
2025-09-02 00:49:04,490 [ scc.git] DEBUG idr/70-reset-password.sh | 1 +
2025-09-02 00:49:04,490 [ scc.git] DEBUG idr/nginx/conf.d/default.conf | 1 +
2025-09-02 00:49:04,490 [ scc.git] DEBUG idr/nginx/conf.d/example_ssl.conf | 1 +
2025-09-02 00:49:04,490 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cache.conf | 53 +++++++++++
2025-09-02 00:49:04,490 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cachebuster.conf | 114 ++++++++++++++++++++++++
2025-09-02 00:49:04,491 [ scc.git] DEBUG idr/nginx/conf.d/proxy-default.conf | 135 +++++++++++++++++++++++++++++
2025-09-02 00:49:04,493 [ scc.git] DEBUG idr/nginx/conf.d/proxy-omeroreadwrite.conf | 115 ++++++++++++++++++++++++
2025-09-02 00:49:04,493 [ scc.git] DEBUG idr/nginx/conf.d/proxy-redirect.conf | 15 ++++
2025-09-02 00:49:04,493 [ scc.git] DEBUG idr/nginx/conf.d/proxy-upstream.conf | 13 +++
2025-09-02 00:49:04,493 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:04,493 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v0.conf | 26 ++++++
2025-09-02 00:49:04,493 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v1.conf | 30 +++++++
2025-09-02 00:49:04,493 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v2.conf | 30 +++++++
2025-09-02 00:49:04,493 [ scc.git] DEBUG idr/nginx/conf.d/proxy-websockets.conf | 6 ++
2025-09-02 00:49:04,493 [ scc.git] DEBUG idr/nginx/nginx.conf | 53 +++++++++++
2025-09-02 00:49:04,493 [ scc.git] DEBUG idr/omero/Dockerfile | 3 +
2025-09-02 00:49:04,493 [ scc.git] DEBUG idr/omero/playbook.yml | 41 +++++++++
2025-09-02 00:49:04,493 [ scc.git] DEBUG idr/redirect/Dockerfile | 6 ++
2025-09-02 00:49:04,493 [ scc.git] DEBUG idr/web/Dockerfile | 5 ++
2025-09-02 00:49:04,493 [ scc.git] DEBUG idr/web/playbook.yml | 45 ++++++++++
2025-09-02 00:49:04,493 [ scc.git] DEBUG 22 files changed, 824 insertions(+)
2025-09-02 00:49:04,493 [ scc.git] DEBUG create mode 100644 idr-compose.yml
2025-09-02 00:49:04,493 [ scc.git] DEBUG create mode 100644 idr-haproxy.yml
2025-09-02 00:49:04,493 [ scc.git] DEBUG create mode 100755 idr/40-ansible.sh
2025-09-02 00:49:04,493 [ scc.git] DEBUG create mode 100755 idr/70-reset-password.sh
2025-09-02 00:49:04,493 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/default.conf
2025-09-02 00:49:04,493 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/example_ssl.conf
2025-09-02 00:49:04,493 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cache.conf
2025-09-02 00:49:04,493 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cachebuster.conf
2025-09-02 00:49:04,493 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-default.conf
2025-09-02 00:49:04,493 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-omeroreadwrite.conf
2025-09-02 00:49:04,493 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-redirect.conf
2025-09-02 00:49:04,493 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-upstream.conf
2025-09-02 00:49:04,493 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v0.conf
2025-09-02 00:49:04,493 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v1.conf
2025-09-02 00:49:04,494 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v2.conf
2025-09-02 00:49:04,494 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-websockets.conf
2025-09-02 00:49:04,494 [ scc.git] DEBUG create mode 100644 idr/nginx/nginx.conf
2025-09-02 00:49:04,494 [ scc.git] DEBUG create mode 100644 idr/omero/Dockerfile
2025-09-02 00:49:04,494 [ scc.git] DEBUG create mode 100644 idr/omero/playbook.yml
2025-09-02 00:49:04,494 [ scc.git] DEBUG create mode 100644 idr/redirect/Dockerfile
2025-09-02 00:49:04,494 [ scc.git] DEBUG create mode 100644 idr/web/Dockerfile
2025-09-02 00:49:04,494 [ scc.git] DEBUG create mode 100644 idr/web/playbook.yml
2025-09-02 00:49:04,738 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-02 00:49:04,739 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-09-02 00:49:04,743 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:49:04,745 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 76 (Run cli deps) bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-09-02 00:49:04,756 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-02 00:49:04,759 [ scc.git] DEBUG docker | 1 +
2025-09-02 00:49:04,759 [ scc.git] DEBUG 1 file changed, 1 insertion(+)
2025-09-02 00:49:04,991 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:05,211 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-02 00:49:05,211 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-02 00:49:05,253 [ scc.git] DEBUG Get sha1 of %s
2025-09-02 00:49:05,253 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:49:05,255 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-02 00:49:05,294 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-02 00:49:05,299 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe7e9f24390> has no local changes
2025-09-02 00:49:05,299 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
- PR 76 will-moore 'Run cli deps'
Generated by OMERO-plugins-push#523 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/523/)'
2025-09-02 00:49:05,306 [ scc.git] DEBUG [detached HEAD 00e4701] merge master -Dorg -Ssuccess-only
2025-09-02 00:49:05,306 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-02 00:49:05,306 [ scc.repo] DEBUG ## PRs found:
2025-09-02 00:49:05,463 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:05,670 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 2
2025-09-02 00:49:05,670 [ scc.repo] DEBUG ## Branches found:
2025-09-02 00:49:05,670 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-09-02 00:49:05,670 [ scc.git] DEBUG Get sha1 of %s
2025-09-02 00:49:05,670 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:49:05,673 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-02 00:49:05,675 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-02 00:49:05,675 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-02 00:49:05,678 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-02 00:49:05,681 [ scc.git] DEBUG Already up to date.
2025-09-02 00:49:05,681 [ scc.git] DEBUG ## Unique users: []
2025-09-02 00:49:05,681 [ scc.git] DEBUG Get sha1 of %s
2025-09-02 00:49:05,681 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:49:05,683 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-02 00:49:05,723 [ scc.git] DEBUG Get sha1 of %s
2025-09-02 00:49:05,723 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:49:05,725 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-02 00:49:05,765 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-02 00:49:05,769 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe7e9f74650> has no local changes
2025-09-02 00:49:05,769 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Generated by OMERO-plugins-push#523 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/523/)'
2025-09-02 00:49:05,775 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-02 00:49:05,775 [ scc.git] DEBUG [detached HEAD 20f6f6d] merge master -Dorg -Ssuccess-only
2025-09-02 00:49:05,775 [ scc.repo] DEBUG ## PRs found:
2025-09-02 00:49:05,923 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:06,153 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 2
2025-09-02 00:49:06,154 [ scc.repo] DEBUG ## Branches found:
2025-09-02 00:49:06,154 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-09-02 00:49:06,154 [ scc.git] DEBUG Get sha1 of %s
2025-09-02 00:49:06,154 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:49:06,156 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-02 00:49:06,159 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-02 00:49:06,159 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-02 00:49:06,162 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-02 00:49:06,170 [ scc.git] DEBUG Updating deab817..160d894
2025-09-02 00:49:06,406 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:06,870 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2025-09-02 00:49:06,871 [ scc.git] DEBUG ## Unique users: []
2025-09-02 00:49:06,871 [ scc.git] DEBUG Get sha1 of %s
2025-09-02 00:49:06,871 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:49:06,874 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-02 00:49:06,914 [ scc.git] DEBUG Get sha1 of %s
2025-09-02 00:49:06,914 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:49:06,916 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-02 00:49:06,955 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-02 00:49:06,959 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe7fa14c550> has no local changes
2025-09-02 00:49:06,959 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Generated by OMERO-plugins-push#523 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/523/)'
2025-09-02 00:49:06,965 [ scc.git] DEBUG [detached HEAD 873b238] merge master -Dorg -Ssuccess-only
2025-09-02 00:49:06,966 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-02 00:49:06,966 [ scc.git] INFO Overriding base-branch from master to main
2025-09-02 00:49:06,966 [ scc.repo] DEBUG ## PRs found:
2025-09-02 00:49:07,123 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:07,474 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2025-09-02 00:49:07,726 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:08,011 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None
2025-09-02 00:49:08,264 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:08,525 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/cf419dd60e4884ee15050271c97a6268e6e998b8 HTTP/1.1" 200 None
2025-09-02 00:49:08,778 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:09,057 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/cf419dd60e4884ee15050271c97a6268e6e998b8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-02 00:49:09,309 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:09,569 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/cf419dd60e4884ee15050271c97a6268e6e998b8/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-02 00:49:09,822 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:10,082 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/cf419dd60e4884ee15050271c97a6268e6e998b8 HTTP/1.1" 200 None
2025-09-02 00:49:10,334 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:10,548 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/cf419dd60e4884ee15050271c97a6268e6e998b8?per_page=1 HTTP/1.1" 200 2
2025-09-02 00:49:10,549 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import'
2025-09-02 00:49:10,801 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:11,087 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/20 HTTP/1.1" 200 None
2025-09-02 00:49:11,340 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:11,600 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/20/comments HTTP/1.1" 200 None
2025-09-02 00:49:11,853 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:12,151 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/76b47bafa934219c6487579e3df167219ea56fec HTTP/1.1" 200 None
2025-09-02 00:49:12,404 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:12,694 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/76b47bafa934219c6487579e3df167219ea56fec/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-02 00:49:12,947 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:13,390 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/76b47bafa934219c6487579e3df167219ea56fec/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-02 00:49:13,643 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:13,927 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/76b47bafa934219c6487579e3df167219ea56fec HTTP/1.1" 200 None
2025-09-02 00:49:14,180 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:14,419 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/76b47bafa934219c6487579e3df167219ea56fec?per_page=1 HTTP/1.1" 200 2
2025-09-02 00:49:14,419 [ scc.repo] DEBUG - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2025-09-02 00:49:14,672 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:14,937 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/18 HTTP/1.1" 200 None
2025-09-02 00:49:15,190 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:15,463 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/18/comments HTTP/1.1" 200 None
2025-09-02 00:49:15,715 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:16,085 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec HTTP/1.1" 200 None
2025-09-02 00:49:16,337 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:16,608 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-02 00:49:16,860 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:17,157 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-02 00:49:17,409 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:17,651 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2025-09-02 00:49:17,903 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:18,179 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2025-09-02 00:49:18,431 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:18,662 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2025-09-02 00:49:18,915 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:19,218 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-09-02 00:49:19,471 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:19,709 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-02 00:49:19,961 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:20,270 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-09-02 00:49:20,523 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:20,749 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2025-09-02 00:49:20,749 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-09-02 00:49:20,750 [ scc.repo] DEBUG ## Branches found:
2025-09-02 00:49:20,750 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-09-02 00:49:20,750 [ scc.git] DEBUG Get sha1 of %s
2025-09-02 00:49:20,750 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:49:20,753 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2025-09-02 00:49:20,755 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-02 00:49:20,755 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2025-09-02 00:49:20,758 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2025-09-02 00:49:20,761 [ scc.git] DEBUG Already up to date.
2025-09-02 00:49:20,761 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2025-09-02 00:49:21,050 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-09-02 00:49:21,050 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2025-09-02 00:49:21,054 [ scc.git] DEBUG Calling 'git fetch origin pull/20/head'
2025-09-02 00:49:21,338 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-09-02 00:49:21,338 [ scc.git] DEBUG * branch refs/pull/20/head -> FETCH_HEAD
2025-09-02 00:49:21,342 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head'
2025-09-02 00:49:21,641 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-09-02 00:49:21,641 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD
2025-09-02 00:49:21,645 [ scc.git] DEBUG ## Unique users: []
2025-09-02 00:49:21,645 [ scc.git] DEBUG Get sha1 of %s
2025-09-02 00:49:21,645 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:49:21,648 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-09-02 00:49:21,651 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:49:21,654 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-09-02 00:49:21,661 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2025-09-02 00:49:21,661 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2025-09-02 00:49:21,662 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-09-02 00:49:21,662 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-09-02 00:49:21,665 [ scc.git] DEBUG Calling 'git reset --hard 8f3c31388de8a7c44f18a6f0e20ea41d35fae041'
2025-09-02 00:49:21,669 [ scc.git] DEBUG HEAD is now at 8f3c313 Merge pull request #17 from jburel/build
2025-09-02 00:49:21,671 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:21,908 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-02 00:49:21,909 [ scc.git] DEBUG Calling 'git merge-base 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-09-02 00:49:21,912 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..8f3c31388de8a7c44f18a6f0e20ea41d35fae041'
2025-09-02 00:49:21,915 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#523](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/523/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/523/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2025-09-02 00:49:21,917 [ scc.config] DEBUG Found github.token
2025-09-02 00:49:21,917 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2025-09-02 00:49:21,917 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...76b47bafa934219c6487579e3df167219ea56fec'
2025-09-02 00:49:21,920 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:49:21,922 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 20 (Use zarr_format=2 for .zarray and chunk endpoints) 76b47bafa934219c6487579e3df167219ea56fec'
2025-09-02 00:49:21,931 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-02 00:49:21,934 [ scc.git] DEBUG omero_web_zarr/views.py | 3 ++-
2025-09-02 00:49:21,934 [ scc.git] DEBUG 1 file changed, 2 insertions(+), 1 deletion(-)
2025-09-02 00:49:22,161 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:22,372 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-02 00:49:22,372 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...cf419dd60e4884ee15050271c97a6268e6e998b8'
2025-09-02 00:49:22,376 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:49:22,378 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) cf419dd60e4884ee15050271c97a6268e6e998b8'
2025-09-02 00:49:22,387 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2025-09-02 00:49:22,388 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-02 00:49:22,391 [ scc.git] DEBUG README.rst | 3 +
2025-09-02 00:49:22,391 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++
2025-09-02 00:49:22,391 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 +
2025-09-02 00:49:22,391 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++-
2025-09-02 00:49:22,391 [ scc.git] DEBUG setup.py | 5 +-
2025-09-02 00:49:22,391 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-)
2025-09-02 00:49:22,391 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html
2025-09-02 00:49:22,624 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:22,814 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-02 00:49:22,814 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-02 00:49:22,857 [ scc.git] DEBUG Get sha1 of %s
2025-09-02 00:49:22,857 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:49:22,859 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-02 00:49:22,901 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-02 00:49:22,905 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe7fa1fc5d0> has no local changes
2025-09-02 00:49:22,905 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 18 will-moore 'Build' (status: failure)
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Already up to date.
Merged PRs:
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#523 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/523/)'
2025-09-02 00:49:22,911 [ scc.git] DEBUG [detached HEAD 61a276c] merge master -Dorg -Ssuccess-only
2025-09-02 00:49:22,912 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-02 00:49:22,912 [ scc.repo] DEBUG ## PRs found:
2025-09-02 00:49:23,067 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:23,312 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 2
2025-09-02 00:49:23,312 [ scc.repo] DEBUG ## Branches found:
2025-09-02 00:49:23,312 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-09-02 00:49:23,312 [ scc.git] DEBUG Get sha1 of %s
2025-09-02 00:49:23,313 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:49:23,315 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-02 00:49:23,317 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-02 00:49:23,317 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-02 00:49:23,320 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-02 00:49:23,324 [ scc.git] DEBUG Already up to date.
2025-09-02 00:49:23,324 [ scc.git] DEBUG ## Unique users: []
2025-09-02 00:49:23,324 [ scc.git] DEBUG Get sha1 of %s
2025-09-02 00:49:23,324 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:49:23,326 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-02 00:49:23,367 [ scc.git] DEBUG Get sha1 of %s
2025-09-02 00:49:23,367 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:49:23,370 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-02 00:49:23,410 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-02 00:49:23,414 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe7e9f37f50> has no local changes
2025-09-02 00:49:23,414 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Generated by OMERO-plugins-push#523 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/523/)'
2025-09-02 00:49:23,420 [ scc.git] DEBUG [detached HEAD a966f77] merge master -Dorg -Ssuccess-only
2025-09-02 00:49:23,420 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-02 00:49:23,421 [ scc.repo] DEBUG ## PRs found:
2025-09-02 00:49:23,565 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:23,793 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 2
2025-09-02 00:49:23,794 [ scc.repo] DEBUG ## Branches found:
2025-09-02 00:49:23,794 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-09-02 00:49:23,794 [ scc.git] DEBUG Get sha1 of %s
2025-09-02 00:49:23,794 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:49:23,796 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-02 00:49:23,799 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-02 00:49:23,799 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-02 00:49:23,802 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-02 00:49:23,805 [ scc.git] DEBUG Already up to date.
2025-09-02 00:49:23,805 [ scc.git] DEBUG ## Unique users: []
2025-09-02 00:49:23,805 [ scc.git] DEBUG Get sha1 of %s
2025-09-02 00:49:23,805 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:49:23,807 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-02 00:49:23,847 [ scc.git] DEBUG Get sha1 of %s
2025-09-02 00:49:23,847 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:49:23,849 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-02 00:49:23,888 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-02 00:49:23,892 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe7fa312fd0> has no local changes
2025-09-02 00:49:23,892 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Generated by OMERO-plugins-push#523 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/523/)'
2025-09-02 00:49:23,899 [ scc.git] DEBUG [detached HEAD b313e73] merge master -Dorg -Ssuccess-only
2025-09-02 00:49:23,899 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-02 00:49:23,899 [ scc.repo] DEBUG ## PRs found:
2025-09-02 00:49:24,046 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:24,432 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 None
2025-09-02 00:49:24,685 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:24,943 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100 HTTP/1.1" 200 None
2025-09-02 00:49:25,195 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:25,420 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100/comments HTTP/1.1" 200 None
2025-09-02 00:49:25,672 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:25,973 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-09-02 00:49:26,226 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:26,521 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-02 00:49:26,773 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:27,034 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-09-02 00:49:27,287 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:27,513 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/statuses/b4abacf0cb9b7aee150761d320bdbb80762cd6e7?per_page=1 HTTP/1.1" 200 2
2025-09-02 00:49:27,514 [ scc.repo] DEBUG - PR 100 dominikl 'Run tests properly'
2025-09-02 00:49:27,514 [ scc.repo] DEBUG ## Branches found:
2025-09-02 00:49:27,514 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-09-02 00:49:27,514 [ scc.git] DEBUG Get sha1 of %s
2025-09-02 00:49:27,514 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:49:27,517 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-02 00:49:27,519 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-02 00:49:27,519 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-02 00:49:27,522 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-02 00:49:27,525 [ scc.git] DEBUG Already up to date.
2025-09-02 00:49:27,526 [ scc.git] DEBUG Calling 'git fetch origin pull/100/head'
2025-09-02 00:49:27,809 [ scc.git] DEBUG From https://github.com/ome/rOMERO-gateway
2025-09-02 00:49:27,809 [ scc.git] DEBUG * branch refs/pull/100/head -> FETCH_HEAD
2025-09-02 00:49:27,813 [ scc.git] DEBUG ## Unique users: []
2025-09-02 00:49:27,813 [ scc.git] DEBUG Get sha1 of %s
2025-09-02 00:49:27,813 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:49:27,815 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-09-02 00:49:27,818 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:49:27,821 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 100 (Run tests properly) b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-09-02 00:49:27,830 [ scc.git] DEBUG Auto-merging Dockerfile
2025-09-02 00:49:27,830 [ scc.git] DEBUG CONFLICT (content): Merge conflict in Dockerfile
2025-09-02 00:49:27,830 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-09-02 00:49:27,831 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-09-02 00:49:27,834 [ scc.git] DEBUG Calling 'git reset --hard 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-09-02 00:49:27,838 [ scc.git] DEBUG HEAD is now at 7b5d64d Merge pull request #106 from dominikl/add_examples_2
2025-09-02 00:49:27,841 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:28,038 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-02 00:49:28,038 [ scc.git] DEBUG Calling 'git merge-base 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-09-02 00:49:28,041 [ scc.git] DEBUG Calling 'git diff --name-only 8b424d2d21f70d07729c4da38a9241b9a9f483be..7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-09-02 00:49:28,044 [ scc.git] INFO - PR 100 dominikl 'Run tests properly'
Conflicting PR. Removed from build [OMERO-plugins-push#523](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/523/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/523/consoleText) for more details.
Possible conflicts:
- Upstream changes
- Dockerfile
--conflicts
2025-09-02 00:49:28,046 [ scc.config] DEBUG Found github.token
2025-09-02 00:49:28,046 [ scc.git] DEBUG Not adding comment to issue #100, already --conflicts.
2025-09-02 00:49:28,046 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-02 00:49:28,088 [ scc.git] DEBUG Get sha1 of %s
2025-09-02 00:49:28,088 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:49:28,090 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-02 00:49:28,130 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-02 00:49:28,135 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe7e9fbea90> has no local changes
2025-09-02 00:49:28,135 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Generated by OMERO-plugins-push#523 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/523/)'
2025-09-02 00:49:28,141 [ scc.git] DEBUG [detached HEAD d3fcc70] merge master -Dorg -Ssuccess-only
2025-09-02 00:49:28,141 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-02 00:49:28,142 [ scc.git] INFO Overriding base-branch from master to develop
2025-09-02 00:49:28,142 [ scc.repo] DEBUG ## PRs found:
2025-09-02 00:49:28,290 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:28,627 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2025-09-02 00:49:28,880 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:29,162 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223 HTTP/1.1" 200 None
2025-09-02 00:49:29,414 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:29,640 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223/comments HTTP/1.1" 200 None
2025-09-02 00:49:29,892 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:30,122 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-09-02 00:49:30,374 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:30,622 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-02 00:49:30,874 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:31,185 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-02 00:49:31,438 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:31,752 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-09-02 00:49:32,004 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:32,212 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/d8b2bbd6f5066de883a41ba5338662d60472b0d8?per_page=1 HTTP/1.1" 200 2
2025-09-02 00:49:32,213 [ scc.repo] DEBUG - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-09-02 00:49:32,464 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:32,762 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202 HTTP/1.1" 200 None
2025-09-02 00:49:33,014 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:33,264 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202/comments HTTP/1.1" 200 None
2025-09-02 00:49:33,516 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:33,732 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-09-02 00:49:33,984 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:34,249 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-02 00:49:34,502 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:34,817 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-09-02 00:49:35,070 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:35,279 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/1fd6030669613cdb8879cfe6395db8c820fdcf19?per_page=1 HTTP/1.1" 200 2
2025-09-02 00:49:35,279 [ scc.repo] DEBUG - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-09-02 00:49:35,531 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:35,820 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None
2025-09-02 00:49:36,072 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:36,337 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None
2025-09-02 00:49:36,590 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:36,857 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103 HTTP/1.1" 200 None
2025-09-02 00:49:37,109 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:37,370 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103/comments HTTP/1.1" 200 None
2025-09-02 00:49:37,372 [ scc.repo] DEBUG ## Branches found:
2025-09-02 00:49:37,372 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-09-02 00:49:37,372 [ scc.git] DEBUG Get sha1 of %s
2025-09-02 00:49:37,372 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:49:37,375 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2025-09-02 00:49:37,377 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-02 00:49:37,377 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2025-09-02 00:49:37,381 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2025-09-02 00:49:37,392 [ scc.git] DEBUG Updating 4b4c755..573db34
2025-09-02 00:49:37,623 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:38,075 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2025-09-02 00:49:38,327 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:38,778 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2025-09-02 00:49:38,780 [ scc.git] DEBUG Calling 'git fetch origin pull/202/head'
2025-09-02 00:49:39,078 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-09-02 00:49:39,078 [ scc.git] DEBUG * branch refs/pull/202/head -> FETCH_HEAD
2025-09-02 00:49:39,083 [ scc.git] DEBUG Calling 'git fetch origin pull/223/head'
2025-09-02 00:49:39,370 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-09-02 00:49:39,370 [ scc.git] DEBUG * branch refs/pull/223/head -> FETCH_HEAD
2025-09-02 00:49:39,374 [ scc.git] DEBUG ## Unique users: []
2025-09-02 00:49:39,375 [ scc.git] DEBUG Get sha1 of %s
2025-09-02 00:49:39,375 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:49:39,377 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-09-02 00:49:39,383 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:49:39,385 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 202 (Add Plate support to KeyVal_to_csv.py) 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-09-02 00:49:39,397 [ scc.git] DEBUG CONFLICT (modify/delete): omero/annotation_scripts/KeyVal_to_csv.py deleted in HEAD and modified in 1fd6030669613cdb8879cfe6395db8c820fdcf19. Version 1fd6030669613cdb8879cfe6395db8c820fdcf19 of omero/annotation_scripts/KeyVal_to_csv.py left in tree.
2025-09-02 00:49:39,397 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-09-02 00:49:39,398 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-09-02 00:49:39,400 [ scc.git] DEBUG Calling 'git reset --hard 573db340d5d1429fa17c7e486206948412a7c150'
2025-09-02 00:49:39,404 [ scc.git] DEBUG HEAD is now at 573db34 Bump version: 5.9.1 → 5.9.2.dev0
2025-09-02 00:49:39,407 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:39,596 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-02 00:49:39,596 [ scc.git] DEBUG Calling 'git merge-base 573db340d5d1429fa17c7e486206948412a7c150 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-09-02 00:49:39,602 [ scc.git] DEBUG Calling 'git diff --name-only a90f59802f6752ad74badec5c0c1d6b0c9c43b15..573db340d5d1429fa17c7e486206948412a7c150'
2025-09-02 00:49:39,606 [ scc.git] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Conflicting PR. Removed from build [OMERO-plugins-push#523](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/523/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/523/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero/annotation_scripts/KeyVal_to_csv.py
--conflicts
2025-09-02 00:49:39,608 [ scc.config] DEBUG Found github.token
2025-09-02 00:49:39,608 [ scc.git] DEBUG Not adding comment to issue #202, already --conflicts.
2025-09-02 00:49:39,608 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-09-02 00:49:39,613 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:49:39,615 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 223 (don't attempt ROI stats on big images) d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-09-02 00:49:39,625 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-02 00:49:39,629 [ scc.git] DEBUG omero/export_scripts/Batch_ROI_Export.py | 9 ++++++++-
2025-09-02 00:49:39,629 [ scc.git] DEBUG 1 file changed, 8 insertions(+), 1 deletion(-)
2025-09-02 00:49:39,848 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:40,040 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-02 00:49:40,040 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-02 00:49:40,083 [ scc.git] DEBUG Get sha1 of %s
2025-09-02 00:49:40,083 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-02 00:49:40,085 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-02 00:49:40,125 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-02 00:49:40,129 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe7fa308490> has no local changes
2025-09-02 00:49:40,129 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..573db34
Previously merged:
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#523 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/523/)'
2025-09-02 00:49:40,135 [ scc.git] DEBUG [detached HEAD 5489a3c] merge master -Dorg -Ssuccess-only
2025-09-02 00:49:40,136 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-02 00:49:40,136 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-02 00:49:40,214 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2025-09-02 00:49:40,293 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:40,505 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-02 00:49:40,510 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2025-09-02 00:49:40,512 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2025-09-02 00:49:40,757 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:40,952 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-02 00:49:40,957 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2025-09-02 00:49:40,959 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2025-09-02 00:49:41,205 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:41,397 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-02 00:49:41,402 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2025-09-02 00:49:41,404 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2025-09-02 00:49:41,649 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:41,843 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-02 00:49:41,850 [ scc.config] DEBUG Found submodule.omero-figure.url
2025-09-02 00:49:42,096 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:42,301 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-02 00:49:42,306 [ scc.config] DEBUG Found submodule.omero-figure.branch
2025-09-02 00:49:42,308 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2025-09-02 00:49:42,553 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:42,751 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-02 00:49:42,756 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2025-09-02 00:49:42,758 [ scc.config] DEBUG Found submodule.omero-gallery.url
2025-09-02 00:49:43,003 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:43,197 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-02 00:49:43,202 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2025-09-02 00:49:43,204 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2025-09-02 00:49:43,450 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:43,638 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-02 00:49:43,644 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2025-09-02 00:49:43,646 [ scc.config] DEBUG Found submodule.omero-mapr.url
2025-09-02 00:49:43,891 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:44,086 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-02 00:49:44,091 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2025-09-02 00:49:44,093 [ scc.config] DEBUG Found submodule.omero-metadata.url
2025-09-02 00:49:44,338 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:44,529 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-02 00:49:44,534 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2025-09-02 00:49:44,536 [ scc.config] DEBUG Found submodule.omero-parade.url
2025-09-02 00:49:44,781 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:44,982 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-02 00:49:44,988 [ scc.config] DEBUG Found submodule.omero-parade.branch
2025-09-02 00:49:44,990 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2025-09-02 00:49:45,235 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:45,439 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-02 00:49:45,445 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2025-09-02 00:49:45,447 [ scc.config] DEBUG Found submodule.omero-rois.url
2025-09-02 00:49:45,692 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:45,903 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-02 00:49:45,910 [ scc.config] DEBUG Found submodule.omero-signup.url
2025-09-02 00:49:46,155 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:46,359 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-02 00:49:46,367 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2025-09-02 00:49:46,612 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:46,808 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-02 00:49:46,813 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2025-09-02 00:49:46,815 [ scc.config] DEBUG Found submodule.omero-upload.url
2025-09-02 00:49:47,060 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:47,288 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-02 00:49:47,295 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2025-09-02 00:49:47,541 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:47,735 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-02 00:49:47,742 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2025-09-02 00:49:47,987 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:48,173 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-02 00:49:48,178 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2025-09-02 00:49:48,180 [ scc.config] DEBUG Found submodule.omero-weberror.url
2025-09-02 00:49:48,425 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:48,626 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-02 00:49:48,631 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2025-09-02 00:49:48,633 [ scc.config] DEBUG Found submodule.omero-webtest.url
2025-09-02 00:49:48,878 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:49,065 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-02 00:49:49,071 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2025-09-02 00:49:49,073 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2025-09-02 00:49:49,318 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:49,515 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-02 00:49:49,521 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2025-09-02 00:49:49,523 [ scc.config] DEBUG Found submodule.scripts.url
2025-09-02 00:49:49,768 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-02 00:49:49,973 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-02 00:49:49,978 [ scc.config] DEBUG Found submodule.scripts.branch
2025-09-02 00:49:49,978 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-02 00:49:50,074 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe7fa1efed0> has local changes
2025-09-02 00:49:50,074 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Repository: ome/omero-cli-render
Excluded PRs:
- PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Already up to date.
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
- PR 69 dominikl 'Fix help text for impo/export commands'
- PR 71 dominikl 'Escape slash character in image names'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 174 will-moore 'Skip wells' (stage: draft)
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (exclude comment)
- PR 170 will-moore 'Use ome zarr models py' (stage: draft)
- PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
- PR 167 dominikl 'Add extinfo command' (stage: draft)
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..f7eea7c
Previously merged:
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
- PR 180 will-moore 'Register command'
Repository: ome/omero-figure
Excluded PRs:
- PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
- PR 619 will-moore 'OME-Zarr support' (stage: draft)
- PR 543 will-moore 'Plate well labels' (exclude comment)
Updating 9cc36cde..d2c6f5bc
Previously merged:
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 600 Rdornier 'Label on rois'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 612 will-moore 'Script version'
- PR 639 dependabot[bot] 'Bump vite from 6.2.6 to 6.2.7'
Conflicting PRs (not included):
- PR 616 Rdornier 'Fix labels around border'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 637 Rdornier 'Fix scalebar position'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..bb94cf8
Previously merged:
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
Conflicting PRs (not included):
- PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
Repository: ome/omero-signup
Already up to date.
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
- PR 76 will-moore 'Run cli deps'
Repository: ome/omero-upload
Already up to date.
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 18 will-moore 'Build' (status: failure)
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Already up to date.
Merged PRs:
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Repository: openmicroscopy/omero-webtest
Already up to date.
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..573db34
Previously merged:
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#523 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/523/)'
2025-09-02 00:49:50,087 [ scc.git] DEBUG [detached HEAD ce62bab] merge master -Dorg -Ssuccess-only
2025-09-02 00:49:50,088 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-)
2025-09-02 00:49:50,088 [ scc.merge] INFO Repository: ome/omero-plugins
2025-09-02 00:49:50,088 [ scc.merge] INFO Already up to date.
2025-09-02 00:49:50,088 [ scc.merge] INFO
2025-09-02 00:49:50,088 [ scc.merge] INFO Merged PRs:
2025-09-02 00:49:50,088 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2025-09-02 00:49:50,088 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2025-09-02 00:49:50,088 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2025-09-02 00:49:50,088 [ scc.merge] INFO
2025-09-02 00:49:50,088 [ scc.merge] INFO Repository: ome/minimal-omero-client
2025-09-02 00:49:50,088 [ scc.merge] INFO Already up to date.
2025-09-02 00:49:50,088 [ scc.merge] INFO
2025-09-02 00:49:50,088 [ scc.merge] INFO
2025-09-02 00:49:50,088 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2025-09-02 00:49:50,088 [ scc.merge] INFO Excluded PRs:
2025-09-02 00:49:50,088 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2025-09-02 00:49:50,088 [ scc.merge] INFO Already up to date.
2025-09-02 00:49:50,088 [ scc.merge] INFO
2025-09-02 00:49:50,088 [ scc.merge] INFO
2025-09-02 00:49:50,088 [ scc.merge] INFO Repository: ome/omero-cli-render
2025-09-02 00:49:50,088 [ scc.merge] INFO Excluded PRs:
2025-09-02 00:49:50,088 [ scc.merge] INFO - PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
2025-09-02 00:49:50,088 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2025-09-02 00:49:50,088 [ scc.merge] INFO Already up to date.
2025-09-02 00:49:50,088 [ scc.merge] INFO
2025-09-02 00:49:50,088 [ scc.merge] INFO Merged PRs:
2025-09-02 00:49:50,089 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2025-09-02 00:49:50,089 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2025-09-02 00:49:50,089 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2025-09-02 00:49:50,089 [ scc.merge] INFO
2025-09-02 00:49:50,089 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2025-09-02 00:49:50,089 [ scc.merge] INFO Excluded PRs:
2025-09-02 00:49:50,089 [ scc.merge] INFO - PR 174 will-moore 'Skip wells' (stage: draft)
2025-09-02 00:49:50,089 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (exclude comment)
2025-09-02 00:49:50,089 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft)
2025-09-02 00:49:50,089 [ scc.merge] INFO - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
2025-09-02 00:49:50,089 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft)
2025-09-02 00:49:50,089 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2025-09-02 00:49:50,089 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-09-02 00:49:50,089 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2025-09-02 00:49:50,089 [ scc.merge] INFO Updating 11d3587..f7eea7c
2025-09-02 00:49:50,089 [ scc.merge] INFO Previously merged:
2025-09-02 00:49:50,089 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2025-09-02 00:49:50,089 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2025-09-02 00:49:50,089 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2025-09-02 00:49:50,089 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2025-09-02 00:49:50,089 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2025-09-02 00:49:50,089 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2025-09-02 00:49:50,089 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-02 00:49:50,089 [ scc.merge] INFO
2025-09-02 00:49:50,089 [ scc.merge] INFO Merged PRs:
2025-09-02 00:49:50,089 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2025-09-02 00:49:50,089 [ scc.merge] INFO - PR 180 will-moore 'Register command'
2025-09-02 00:49:50,089 [ scc.merge] INFO
2025-09-02 00:49:50,089 [ scc.merge] INFO Repository: ome/omero-figure
2025-09-02 00:49:50,089 [ scc.merge] INFO Excluded PRs:
2025-09-02 00:49:50,089 [ scc.merge] INFO - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
2025-09-02 00:49:50,089 [ scc.merge] INFO - PR 619 will-moore 'OME-Zarr support' (stage: draft)
2025-09-02 00:49:50,089 [ scc.merge] INFO - PR 543 will-moore 'Plate well labels' (exclude comment)
2025-09-02 00:49:50,089 [ scc.merge] INFO Updating 9cc36cde..d2c6f5bc
2025-09-02 00:49:50,089 [ scc.merge] INFO Previously merged:
2025-09-02 00:49:50,089 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2025-09-02 00:49:50,090 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2025-09-02 00:49:50,090 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2025-09-02 00:49:50,090 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2025-09-02 00:49:50,090 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-02 00:49:50,090 [ scc.merge] INFO
2025-09-02 00:49:50,090 [ scc.merge] INFO Merged PRs:
2025-09-02 00:49:50,090 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2025-09-02 00:49:50,090 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2025-09-02 00:49:50,090 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2025-09-02 00:49:50,090 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2025-09-02 00:49:50,090 [ scc.merge] INFO - PR 639 dependabot[bot] 'Bump vite from 6.2.6 to 6.2.7'
2025-09-02 00:49:50,090 [ scc.merge] INFO
2025-09-02 00:49:50,090 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-02 00:49:50,090 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2025-09-02 00:49:50,090 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2025-09-02 00:49:50,090 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2025-09-02 00:49:50,090 [ scc.merge] INFO
2025-09-02 00:49:50,090 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2025-09-02 00:49:50,090 [ scc.merge] INFO Already up to date.
2025-09-02 00:49:50,090 [ scc.merge] INFO
2025-09-02 00:49:50,090 [ scc.merge] INFO Merged PRs:
2025-09-02 00:49:50,090 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2025-09-02 00:49:50,090 [ scc.merge] INFO
2025-09-02 00:49:50,090 [ scc.merge] INFO Repository: ome/omero-gallery
2025-09-02 00:49:50,090 [ scc.merge] INFO Already up to date.
2025-09-02 00:49:50,090 [ scc.merge] INFO
2025-09-02 00:49:50,090 [ scc.merge] INFO Merged PRs:
2025-09-02 00:49:50,090 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2025-09-02 00:49:50,090 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2025-09-02 00:49:50,090 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2025-09-02 00:49:50,090 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2025-09-02 00:49:50,090 [ scc.merge] INFO
2025-09-02 00:49:50,090 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-02 00:49:50,090 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2025-09-02 00:49:50,090 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2025-09-02 00:49:50,090 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2025-09-02 00:49:50,091 [ scc.merge] INFO
2025-09-02 00:49:50,091 [ scc.merge] INFO Repository: ome/omero-iviewer
2025-09-02 00:49:50,091 [ scc.merge] INFO Excluded PRs:
2025-09-02 00:49:50,091 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
2025-09-02 00:49:50,091 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
2025-09-02 00:49:50,091 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2025-09-02 00:49:50,091 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2025-09-02 00:49:50,091 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure)
2025-09-02 00:49:50,091 [ scc.merge] INFO Updating 7a798ce..bb94cf8
2025-09-02 00:49:50,091 [ scc.merge] INFO Previously merged:
2025-09-02 00:49:50,091 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-02 00:49:50,091 [ scc.merge] INFO
2025-09-02 00:49:50,091 [ scc.merge] INFO Merged PRs:
2025-09-02 00:49:50,091 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix'
2025-09-02 00:49:50,091 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2025-09-02 00:49:50,091 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2025-09-02 00:49:50,091 [ scc.merge] INFO - PR 499 dependabot[bot] 'Bump nanoid and mocha'
2025-09-02 00:49:50,091 [ scc.merge] INFO
2025-09-02 00:49:50,091 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-02 00:49:50,091 [ scc.merge] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
2025-09-02 00:49:50,091 [ scc.merge] INFO
2025-09-02 00:49:50,091 [ scc.merge] INFO Repository: ome/omero-mapr
2025-09-02 00:49:50,091 [ scc.merge] INFO Excluded PRs:
2025-09-02 00:49:50,091 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2025-09-02 00:49:50,091 [ scc.merge] INFO Already up to date.
2025-09-02 00:49:50,091 [ scc.merge] INFO
2025-09-02 00:49:50,091 [ scc.merge] INFO Merged PRs:
2025-09-02 00:49:50,091 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient'
2025-09-02 00:49:50,091 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-02 00:49:50,091 [ scc.merge] INFO
2025-09-02 00:49:50,091 [ scc.merge] INFO Repository: ome/omero-metadata
2025-09-02 00:49:50,091 [ scc.merge] INFO Updating 3cd120c..55060a2
2025-09-02 00:49:50,091 [ scc.merge] INFO Previously merged:
2025-09-02 00:49:50,091 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-02 00:49:50,091 [ scc.merge] INFO
2025-09-02 00:49:50,091 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-02 00:49:50,091 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-09-02 00:49:50,092 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-09-02 00:49:50,092 [ scc.merge] INFO
2025-09-02 00:49:50,092 [ scc.merge] INFO Repository: ome/omero-parade
2025-09-02 00:49:50,092 [ scc.merge] INFO Excluded PRs:
2025-09-02 00:49:50,092 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2025-09-02 00:49:50,092 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2025-09-02 00:49:50,092 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2025-09-02 00:49:50,092 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2025-09-02 00:49:50,092 [ scc.merge] INFO Already up to date.
2025-09-02 00:49:50,092 [ scc.merge] INFO
2025-09-02 00:49:50,092 [ scc.merge] INFO Merged PRs:
2025-09-02 00:49:50,092 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-09-02 00:49:50,092 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-09-02 00:49:50,092 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-02 00:49:50,092 [ scc.merge] INFO
2025-09-02 00:49:50,092 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2025-09-02 00:49:50,092 [ scc.merge] INFO Already up to date.
2025-09-02 00:49:50,092 [ scc.merge] INFO
2025-09-02 00:49:50,092 [ scc.merge] INFO
2025-09-02 00:49:50,092 [ scc.merge] INFO Repository: ome/omero-rois
2025-09-02 00:49:50,092 [ scc.merge] INFO Excluded PRs:
2025-09-02 00:49:50,092 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-09-02 00:49:50,092 [ scc.merge] INFO Already up to date.
2025-09-02 00:49:50,092 [ scc.merge] INFO
2025-09-02 00:49:50,092 [ scc.merge] INFO Merged PRs:
2025-09-02 00:49:50,092 [ scc.merge] INFO - PR 33 jo-mueller 'Add roi to array functions'
2025-09-02 00:49:50,092 [ scc.merge] INFO
2025-09-02 00:49:50,092 [ scc.merge] INFO Repository: ome/omero-signup
2025-09-02 00:49:50,092 [ scc.merge] INFO Already up to date.
2025-09-02 00:49:50,092 [ scc.merge] INFO
2025-09-02 00:49:50,092 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-02 00:49:50,092 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2025-09-02 00:49:50,092 [ scc.merge] INFO
2025-09-02 00:49:50,092 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2025-09-02 00:49:50,092 [ scc.merge] INFO Excluded PRs:
2025-09-02 00:49:50,092 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2025-09-02 00:49:50,092 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
2025-09-02 00:49:50,093 [ scc.merge] INFO - PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
2025-09-02 00:49:50,093 [ scc.merge] INFO Already up to date.
2025-09-02 00:49:50,093 [ scc.merge] INFO
2025-09-02 00:49:50,093 [ scc.merge] INFO Merged PRs:
2025-09-02 00:49:50,093 [ scc.merge] INFO - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-09-02 00:49:50,093 [ scc.merge] INFO - PR 76 will-moore 'Run cli deps'
2025-09-02 00:49:50,093 [ scc.merge] INFO
2025-09-02 00:49:50,093 [ scc.merge] INFO Repository: ome/omero-upload
2025-09-02 00:49:50,093 [ scc.merge] INFO Already up to date.
2025-09-02 00:49:50,093 [ scc.merge] INFO
2025-09-02 00:49:50,093 [ scc.merge] INFO
2025-09-02 00:49:50,093 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2025-09-02 00:49:50,093 [ scc.merge] INFO Updating deab817..160d894
2025-09-02 00:49:50,093 [ scc.merge] INFO Previously merged:
2025-09-02 00:49:50,093 [ scc.merge] INFO - PR 20 jburel 'Build'
2025-09-02 00:49:50,093 [ scc.merge] INFO
2025-09-02 00:49:50,093 [ scc.merge] INFO
2025-09-02 00:49:50,093 [ scc.merge] INFO Repository: ome/omero-web-zarr
2025-09-02 00:49:50,093 [ scc.merge] INFO Excluded PRs:
2025-09-02 00:49:50,093 [ scc.merge] INFO - PR 18 will-moore 'Build' (status: failure)
2025-09-02 00:49:50,093 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2025-09-02 00:49:50,093 [ scc.merge] INFO Already up to date.
2025-09-02 00:49:50,093 [ scc.merge] INFO
2025-09-02 00:49:50,093 [ scc.merge] INFO Merged PRs:
2025-09-02 00:49:50,093 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2025-09-02 00:49:50,093 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import'
2025-09-02 00:49:50,093 [ scc.merge] INFO
2025-09-02 00:49:50,093 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-02 00:49:50,093 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-09-02 00:49:50,093 [ scc.merge] INFO
2025-09-02 00:49:50,093 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2025-09-02 00:49:50,093 [ scc.merge] INFO Already up to date.
2025-09-02 00:49:50,093 [ scc.merge] INFO
2025-09-02 00:49:50,093 [ scc.merge] INFO
2025-09-02 00:49:50,093 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2025-09-02 00:49:50,093 [ scc.merge] INFO Already up to date.
2025-09-02 00:49:50,094 [ scc.merge] INFO
2025-09-02 00:49:50,094 [ scc.merge] INFO
2025-09-02 00:49:50,094 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2025-09-02 00:49:50,094 [ scc.merge] INFO Already up to date.
2025-09-02 00:49:50,094 [ scc.merge] INFO
2025-09-02 00:49:50,094 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-02 00:49:50,094 [ scc.merge] INFO - PR 100 dominikl 'Run tests properly'
2025-09-02 00:49:50,094 [ scc.merge] INFO
2025-09-02 00:49:50,094 [ scc.merge] INFO Repository: ome/scripts
2025-09-02 00:49:50,094 [ scc.merge] INFO Excluded PRs:
2025-09-02 00:49:50,094 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
2025-09-02 00:49:50,094 [ scc.merge] INFO - PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
2025-09-02 00:49:50,094 [ scc.merge] INFO Updating 4b4c755..573db34
2025-09-02 00:49:50,094 [ scc.merge] INFO Previously merged:
2025-09-02 00:49:50,094 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2025-09-02 00:49:50,094 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2025-09-02 00:49:50,094 [ scc.merge] INFO
2025-09-02 00:49:50,094 [ scc.merge] INFO Merged PRs:
2025-09-02 00:49:50,094 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-09-02 00:49:50,094 [ scc.merge] INFO
2025-09-02 00:49:50,094 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-02 00:49:50,094 [ scc.merge] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-09-02 00:49:50,094 [ scc.merge] INFO
2025-09-02 00:49:50,094 [ scc.merge] DEBUG Cleaning remote branches created for merging
2025-09-02 00:49:50,094 [ scc.git] DEBUG Calling 'git remote'
2025-09-02 00:49:50,097 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2025-09-02 00:49:50,097 [ scc.git] DEBUG Calling 'git remote'
2025-09-02 00:49:50,099 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-02 00:49:50,099 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2025-09-02 00:49:50,099 [ scc.git] DEBUG Calling 'git remote'
2025-09-02 00:49:50,102 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-02 00:49:50,102 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2025-09-02 00:49:50,102 [ scc.git] DEBUG Calling 'git remote'
2025-09-02 00:49:50,104 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-02 00:49:50,104 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2025-09-02 00:49:50,104 [ scc.git] DEBUG Calling 'git remote'
2025-09-02 00:49:50,106 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-02 00:49:50,106 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2025-09-02 00:49:50,106 [ scc.git] DEBUG Calling 'git remote'
2025-09-02 00:49:50,109 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-02 00:49:50,109 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2025-09-02 00:49:50,109 [ scc.git] DEBUG Calling 'git remote'
2025-09-02 00:49:50,111 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-02 00:49:50,111 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2025-09-02 00:49:50,111 [ scc.git] DEBUG Calling 'git remote'
2025-09-02 00:49:50,113 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-02 00:49:50,113 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2025-09-02 00:49:50,113 [ scc.git] DEBUG Calling 'git remote'
2025-09-02 00:49:50,115 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-02 00:49:50,116 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2025-09-02 00:49:50,116 [ scc.git] DEBUG Calling 'git remote'
2025-09-02 00:49:50,118 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-02 00:49:50,118 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-09-02 00:49:50,118 [ scc.git] DEBUG Calling 'git remote'
2025-09-02 00:49:50,120 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-02 00:49:50,120 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-09-02 00:49:50,120 [ scc.git] DEBUG Calling 'git remote'
2025-09-02 00:49:50,122 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-02 00:49:50,122 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-09-02 00:49:50,122 [ scc.git] DEBUG Calling 'git remote'
2025-09-02 00:49:50,125 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-02 00:49:50,125 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-09-02 00:49:50,125 [ scc.git] DEBUG Calling 'git remote'
2025-09-02 00:49:50,127 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-02 00:49:50,127 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-09-02 00:49:50,127 [ scc.git] DEBUG Calling 'git remote'
2025-09-02 00:49:50,129 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-02 00:49:50,129 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-09-02 00:49:50,130 [ scc.git] DEBUG Calling 'git remote'
2025-09-02 00:49:50,132 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-02 00:49:50,132 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-09-02 00:49:50,132 [ scc.git] DEBUG Calling 'git remote'
2025-09-02 00:49:50,134 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-02 00:49:50,134 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-09-02 00:49:50,134 [ scc.git] DEBUG Calling 'git remote'
2025-09-02 00:49:50,136 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-02 00:49:50,136 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-09-02 00:49:50,136 [ scc.git] DEBUG Calling 'git remote'
2025-09-02 00:49:50,138 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-02 00:49:50,139 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-09-02 00:49:50,139 [ scc.git] DEBUG Calling 'git remote'
2025-09-02 00:49:50,141 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-02 00:49:50,141 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-09-02 00:49:50,141 [ scc.git] DEBUG Calling 'git remote'
2025-09-02 00:49:50,143 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-02 00:49:50,143 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-09-02 00:49:50,143 [ scc.git] DEBUG Calling 'git remote'
2025-09-02 00:49:50,145 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-02 00:49:50,145 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-09-02 00:49:50,145 [ scc.git] DEBUG Calling 'git remote'
2025-09-02 00:49:50,148 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.10.4-SNAPSHOT
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Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD 9cf9e81] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798ce
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD 7f1a5df] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2025-09-02 00:50:40,609 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2025-09-02 00:50:50,781 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2025-09-02 00:50:53,548 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-09-02 00:50:58,756 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-09-02 00:51:38,809 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
[Pipeline] archiveArtifacts
Archiving artifacts
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: SUCCESS
![[Jenkins]](/jenkins/static/eb00aee0/images/svgs/logo.svg){kind=logo}
