Console Output
Skipping 159 KB..
Full Log8015cc47464ab2761ef74ca30?per_page=1 HTTP/1.1" 200 2
2025-09-03 00:52:28,182 [ scc.repo] DEBUG - PR 460 will-moore 'Channel min spinner fix'
2025-09-03 00:52:28,729 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/227 HTTP/1.1" 200 None
2025-09-03 00:52:29,194 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/227/comments HTTP/1.1" 200 None
2025-09-03 00:52:29,703 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/a081a9f2892763bd49a7ad7ba425965150e76f97 HTTP/1.1" 200 None
2025-09-03 00:52:30,183 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/a081a9f2892763bd49a7ad7ba425965150e76f97/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-03 00:52:30,663 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/a081a9f2892763bd49a7ad7ba425965150e76f97/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-03 00:52:30,664 [ scc.repo] DEBUG ## Branches found:
2025-09-03 00:52:30,664 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2025-09-03 00:52:30,665 [ scc.git] DEBUG Get sha1 of %s
2025-09-03 00:52:30,665 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:52:30,667 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-03 00:52:30,670 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-03 00:52:30,670 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-03 00:52:30,673 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-03 00:52:30,681 [ scc.git] DEBUG Updating 7a798ce..bb94cf8
2025-09-03 00:52:31,298 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/506 HTTP/1.1" 200 None
2025-09-03 00:52:31,299 [ scc.git] DEBUG Calling 'git fetch origin pull/460/head'
2025-09-03 00:52:33,587 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer
2025-09-03 00:52:33,587 [ scc.git] DEBUG * branch refs/pull/460/head -> FETCH_HEAD
2025-09-03 00:52:33,593 [ scc.git] DEBUG Calling 'git fetch origin pull/465/head'
2025-09-03 00:52:34,939 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer
2025-09-03 00:52:34,939 [ scc.git] DEBUG * branch refs/pull/465/head -> FETCH_HEAD
2025-09-03 00:52:34,944 [ scc.git] DEBUG Calling 'git fetch origin pull/471/head'
2025-09-03 00:52:35,266 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer
2025-09-03 00:52:35,266 [ scc.git] DEBUG * branch refs/pull/471/head -> FETCH_HEAD
2025-09-03 00:52:35,271 [ scc.git] DEBUG Calling 'git fetch origin pull/499/head'
2025-09-03 00:52:35,548 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer
2025-09-03 00:52:35,549 [ scc.git] DEBUG * branch refs/pull/499/head -> FETCH_HEAD
2025-09-03 00:52:35,553 [ scc.git] DEBUG Calling 'git fetch origin pull/502/head'
2025-09-03 00:52:35,830 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer
2025-09-03 00:52:35,830 [ scc.git] DEBUG * branch refs/pull/502/head -> FETCH_HEAD
2025-09-03 00:52:35,835 [ scc.git] DEBUG ## Unique users: []
2025-09-03 00:52:35,835 [ scc.git] DEBUG Get sha1 of %s
2025-09-03 00:52:35,835 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:52:35,837 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...dada2c46211e3bf8015cc47464ab2761ef74ca30'
2025-09-03 00:52:35,843 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:52:35,846 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 460 (Channel min spinner fix) dada2c46211e3bf8015cc47464ab2761ef74ca30'
2025-09-03 00:52:36,016 [ scc.git] DEBUG Auto-merging src/model/image_info.js
2025-09-03 00:52:36,016 [ scc.git] DEBUG Auto-merging src/settings/channel-range.js
2025-09-03 00:52:36,017 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-03 00:52:36,020 [ scc.git] DEBUG src/model/image_info.js | 7 ++++---
2025-09-03 00:52:36,020 [ scc.git] DEBUG src/settings/channel-range.js | 4 +++-
2025-09-03 00:52:36,020 [ scc.git] DEBUG 2 files changed, 7 insertions(+), 4 deletions(-)
2025-09-03 00:52:36,176 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-03 00:52:36,177 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...63dd9266a853ff522780066673d0ae2b770238cd'
2025-09-03 00:52:36,183 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:52:36,185 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 465 (Save as Figure) 63dd9266a853ff522780066673d0ae2b770238cd'
2025-09-03 00:52:36,311 [ scc.git] DEBUG Auto-merging plugin/omero_iviewer/views.py
2025-09-03 00:52:36,311 [ scc.git] DEBUG Auto-merging src/app/context.js
2025-09-03 00:52:36,311 [ scc.git] DEBUG Auto-merging src/utils/constants.js
2025-09-03 00:52:36,311 [ scc.git] DEBUG Auto-merging src/viewers/viewer/Viewer.js
2025-09-03 00:52:36,312 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-03 00:52:36,317 [ scc.git] DEBUG plugin/omero_iviewer/views.py | 17 +++-
2025-09-03 00:52:36,317 [ scc.git] DEBUG src/app/context.js | 6 +-
2025-09-03 00:52:36,317 [ scc.git] DEBUG src/app/header.html | 5 +
2025-09-03 00:52:36,317 [ scc.git] DEBUG src/app/header.js | 45 ++++++++-
2025-09-03 00:52:36,317 [ scc.git] DEBUG src/utils/constants.js | 6 ++
2025-09-03 00:52:36,317 [ scc.git] DEBUG src/utils/figure.js | 217 ++++++++++++++++++++++++++++++++++++++++++
2025-09-03 00:52:36,317 [ scc.git] DEBUG 6 files changed, 290 insertions(+), 6 deletions(-)
2025-09-03 00:52:36,317 [ scc.git] DEBUG create mode 100644 src/utils/figure.js
2025-09-03 00:52:36,605 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-03 00:52:36,605 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...448d042a58da05a522531356cc58c1e35b5744d9'
2025-09-03 00:52:36,611 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:52:36,614 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 471 (Z projection disabled tooltip) 448d042a58da05a522531356cc58c1e35b5744d9'
2025-09-03 00:52:36,919 [ scc.git] DEBUG Auto-merging src/controls/dimension-slider.js
2025-09-03 00:52:36,920 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-03 00:52:36,923 [ scc.git] DEBUG src/controls/dimension-slider.html | 2 +-
2025-09-03 00:52:36,923 [ scc.git] DEBUG src/controls/dimension-slider.js | 20 ++++++++++++++++++++
2025-09-03 00:52:36,923 [ scc.git] DEBUG 2 files changed, 21 insertions(+), 1 deletion(-)
2025-09-03 00:52:37,072 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-03 00:52:37,072 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b19bbac5f17ff2b53ba573ca58108d28d2d86bcc'
2025-09-03 00:52:37,086 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:52:37,088 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 499 (Bump nanoid and mocha) b19bbac5f17ff2b53ba573ca58108d28d2d86bcc'
2025-09-03 00:52:37,104 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-03 00:52:37,115 [ scc.git] DEBUG package-lock.json | 322 +++++++++++++++++++++++++++---------------------------
2025-09-03 00:52:37,115 [ scc.git] DEBUG package.json | 2 +-
2025-09-03 00:52:37,115 [ scc.git] DEBUG 2 files changed, 163 insertions(+), 161 deletions(-)
2025-09-03 00:52:37,464 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-03 00:52:37,465 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45d08b7e29871ecff0386975c975dacd0865bcc4'
2025-09-03 00:52:37,534 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:52:37,537 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 502 (Bump serialize-javascript and mocha) 45d08b7e29871ecff0386975c975dacd0865bcc4'
2025-09-03 00:52:37,744 [ scc.git] DEBUG Auto-merging package-lock.json
2025-09-03 00:52:37,744 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json
2025-09-03 00:52:37,745 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-09-03 00:52:37,745 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-09-03 00:52:37,748 [ scc.git] DEBUG Calling 'git reset --hard 768b047cb7a54826488cf3f9f6f7d2c92eaeae11'
2025-09-03 00:52:37,756 [ scc.git] DEBUG HEAD is now at 768b047 merge master -Dorg -Ssuccess-only: PR 499 (Bump nanoid and mocha)
2025-09-03 00:52:37,911 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-03 00:52:37,912 [ scc.git] DEBUG Calling 'git merge-base bb94cf8da960e3283090038b04432f301560f5e4 45d08b7e29871ecff0386975c975dacd0865bcc4'
2025-09-03 00:52:37,915 [ scc.git] DEBUG Calling 'git diff --name-only 7a798ceeb3926d049d73788555fb63269a071052..bb94cf8da960e3283090038b04432f301560f5e4'
2025-09-03 00:52:37,918 [ scc.git] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Conflicting PR. Removed from build [OMERO-plugins-push#524](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/524/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/524/consoleText) for more details.
Possible conflicts:
- PR #499 dependabot[bot] 'Bump nanoid and mocha'
- package-lock.json
--conflicts
2025-09-03 00:52:37,920 [ scc.config] DEBUG Found github.token
2025-09-03 00:52:37,920 [ scc.git] DEBUG Not adding comment to issue #502, already --conflicts.
2025-09-03 00:52:37,920 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-03 00:52:37,960 [ scc.git] DEBUG Get sha1 of %s
2025-09-03 00:52:37,960 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:52:37,962 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-03 00:52:38,002 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-03 00:52:38,009 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f77c24d2f90> has no local changes
2025-09-03 00:52:38,009 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-iviewer
Excluded PRs:
- PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..bb94cf8
Previously merged:
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
Conflicting PRs (not included):
- PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Generated by OMERO-plugins-push#524 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/524/)'
2025-09-03 00:52:38,016 [ scc.git] DEBUG [detached HEAD c58b169] merge master -Dorg -Ssuccess-only
2025-09-03 00:52:38,016 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-03 00:52:38,016 [ scc.repo] DEBUG ## PRs found:
2025-09-03 00:52:38,414 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/pulls HTTP/1.1" 200 None
2025-09-03 00:52:38,874 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/94 HTTP/1.1" 200 None
2025-09-03 00:52:39,405 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None
2025-09-03 00:52:39,917 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-03 00:52:40,400 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None
2025-09-03 00:52:40,822 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1896cfebc876f939f8d83bd1cf56b8584ff2921d?per_page=1 HTTP/1.1" 200 2
2025-09-03 00:52:40,822 [ scc.repo] DEBUG - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-03 00:52:41,305 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None
2025-09-03 00:52:41,763 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None
2025-09-03 00:52:42,271 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2025-09-03 00:52:42,728 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-03 00:52:43,155 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2025-09-03 00:52:43,584 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/45ee35acc44a7d119aa20b38b0427efbe5405322?per_page=1 HTTP/1.1" 200 2
2025-09-03 00:52:43,584 [ scc.repo] DEBUG - PR 74 will-moore 'mapr extension of webclient'
2025-09-03 00:52:43,584 [ scc.repo] DEBUG ## Branches found:
2025-09-03 00:52:43,584 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2025-09-03 00:52:43,584 [ scc.git] DEBUG Get sha1 of %s
2025-09-03 00:52:43,584 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:52:43,587 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-03 00:52:43,590 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-03 00:52:43,590 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-03 00:52:43,593 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-03 00:52:43,596 [ scc.git] DEBUG Already up to date.
2025-09-03 00:52:43,596 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head'
2025-09-03 00:52:44,379 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2025-09-03 00:52:44,379 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD
2025-09-03 00:52:44,383 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head'
2025-09-03 00:52:44,664 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2025-09-03 00:52:44,664 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD
2025-09-03 00:52:44,669 [ scc.git] DEBUG ## Unique users: []
2025-09-03 00:52:44,669 [ scc.git] DEBUG Get sha1 of %s
2025-09-03 00:52:44,669 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:52:44,671 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45ee35acc44a7d119aa20b38b0427efbe5405322'
2025-09-03 00:52:44,675 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:52:44,677 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (mapr extension of webclient) 45ee35acc44a7d119aa20b38b0427efbe5405322'
2025-09-03 00:52:44,742 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-03 00:52:44,746 [ scc.git] DEBUG .../templates/webclient/base/base_container.html | 182 +++++++++++++
2025-09-03 00:52:44,746 [ scc.git] DEBUG .../data/includes/right_plugin.general.js.html | 290 ---------------------
2025-09-03 00:52:44,746 [ scc.git] DEBUG requirements.txt | 2 +-
2025-09-03 00:52:44,746 [ scc.git] DEBUG 3 files changed, 183 insertions(+), 291 deletions(-)
2025-09-03 00:52:44,746 [ scc.git] DEBUG create mode 100644 omero_mapr/templates/webclient/base/base_container.html
2025-09-03 00:52:44,746 [ scc.git] DEBUG delete mode 100644 omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html
2025-09-03 00:52:44,892 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-03 00:52:44,892 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2025-09-03 00:52:44,897 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:52:44,899 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2025-09-03 00:52:44,908 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-03 00:52:44,911 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-09-03 00:52:44,911 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-09-03 00:52:45,289 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-03 00:52:45,290 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-03 00:52:45,328 [ scc.git] DEBUG Get sha1 of %s
2025-09-03 00:52:45,328 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:52:45,331 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-03 00:52:45,370 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-03 00:52:45,373 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f77c1301e50> has no local changes
2025-09-03 00:52:45,373 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#524 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/524/)'
2025-09-03 00:52:45,380 [ scc.git] DEBUG [detached HEAD cfde0bc] merge master -Dorg -Ssuccess-only
2025-09-03 00:52:45,380 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-03 00:52:45,380 [ scc.repo] DEBUG ## PRs found:
2025-09-03 00:52:45,816 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None
2025-09-03 00:52:46,311 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None
2025-09-03 00:52:46,803 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None
2025-09-03 00:52:47,321 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-09-03 00:52:47,789 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-03 00:52:48,209 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-09-03 00:52:48,624 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2
2025-09-03 00:52:48,624 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-09-03 00:52:49,080 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None
2025-09-03 00:52:49,540 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None
2025-09-03 00:52:50,121 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-09-03 00:52:50,548 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-03 00:52:51,068 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-09-03 00:52:51,499 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2025-09-03 00:52:51,499 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-09-03 00:52:51,499 [ scc.repo] DEBUG ## Branches found:
2025-09-03 00:52:51,499 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-09-03 00:52:51,499 [ scc.git] DEBUG Get sha1 of %s
2025-09-03 00:52:51,499 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:52:51,502 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-03 00:52:51,504 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-03 00:52:51,505 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-03 00:52:51,508 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-03 00:52:51,516 [ scc.git] DEBUG Updating 3cd120c..55060a2
2025-09-03 00:52:52,143 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2025-09-03 00:52:52,144 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2025-09-03 00:52:53,119 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-09-03 00:52:53,119 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2025-09-03 00:52:53,124 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2025-09-03 00:52:53,701 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-09-03 00:52:53,701 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2025-09-03 00:52:53,706 [ scc.git] DEBUG ## Unique users: []
2025-09-03 00:52:53,706 [ scc.git] DEBUG Get sha1 of %s
2025-09-03 00:52:53,706 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:52:53,709 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-09-03 00:52:53,713 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:52:53,716 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-09-03 00:52:54,067 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2025-09-03 00:52:54,067 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2025-09-03 00:52:54,067 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-09-03 00:52:54,067 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-09-03 00:52:54,067 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-09-03 00:52:54,067 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-09-03 00:52:54,070 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-09-03 00:52:54,075 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-09-03 00:52:54,247 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-03 00:52:54,247 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-09-03 00:52:54,252 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501'
2025-09-03 00:52:54,255 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#524](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/524/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/524/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/cli.py
- src/omero_metadata/populate.py
--conflicts
2025-09-03 00:52:54,257 [ scc.config] DEBUG Found github.token
2025-09-03 00:52:54,257 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2025-09-03 00:52:54,257 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2025-09-03 00:52:54,262 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:52:54,264 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2025-09-03 00:52:54,453 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-09-03 00:52:54,453 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-09-03 00:52:54,453 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2025-09-03 00:52:54,453 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-09-03 00:52:54,454 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-09-03 00:52:54,457 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-09-03 00:52:54,462 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-09-03 00:52:54,657 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-03 00:52:54,658 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7'
2025-09-03 00:52:54,662 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501'
2025-09-03 00:52:54,665 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#524](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/524/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/524/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2025-09-03 00:52:54,668 [ scc.config] DEBUG Found github.token
2025-09-03 00:52:54,668 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2025-09-03 00:52:54,668 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-03 00:52:54,707 [ scc.git] DEBUG Get sha1 of %s
2025-09-03 00:52:54,707 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:52:54,710 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-03 00:52:54,749 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-03 00:52:54,753 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f77c132aad0> has no local changes
2025-09-03 00:52:54,753 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#524 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/524/)'
2025-09-03 00:52:54,761 [ scc.git] DEBUG [detached HEAD 672fdfa] merge master -Dorg -Ssuccess-only
2025-09-03 00:52:54,761 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-03 00:52:54,761 [ scc.repo] DEBUG ## PRs found:
2025-09-03 00:52:55,282 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2025-09-03 00:52:55,828 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2025-09-03 00:52:56,340 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-09-03 00:52:56,848 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-03 00:52:57,322 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-03 00:52:57,839 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-09-03 00:52:58,270 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2025-09-03 00:52:58,270 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-03 00:52:58,740 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2025-09-03 00:52:58,741 [ scc.repo] DEBUG # ... Include label: dependencies
2025-09-03 00:52:59,274 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-09-03 00:52:59,771 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-03 00:53:00,255 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-03 00:53:00,805 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-09-03 00:53:01,227 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2025-09-03 00:53:01,227 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-09-03 00:53:01,713 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2025-09-03 00:53:01,713 [ scc.repo] DEBUG # ... Include label: dependencies
2025-09-03 00:53:02,283 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-09-03 00:53:02,812 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-03 00:53:03,373 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-03 00:53:03,911 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-09-03 00:53:04,346 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2025-09-03 00:53:04,346 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-09-03 00:53:04,824 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2025-09-03 00:53:05,317 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2025-09-03 00:53:05,781 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2025-09-03 00:53:06,244 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2025-09-03 00:53:06,738 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2025-09-03 00:53:07,219 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2025-09-03 00:53:07,708 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2025-09-03 00:53:07,709 [ scc.repo] DEBUG ## Branches found:
2025-09-03 00:53:07,709 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-09-03 00:53:07,709 [ scc.git] DEBUG Get sha1 of %s
2025-09-03 00:53:07,710 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:53:07,712 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-03 00:53:07,715 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-03 00:53:07,715 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-03 00:53:07,718 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-03 00:53:07,721 [ scc.git] DEBUG Already up to date.
2025-09-03 00:53:07,721 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2025-09-03 00:53:08,014 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-09-03 00:53:08,014 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2025-09-03 00:53:08,019 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2025-09-03 00:53:08,305 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-09-03 00:53:08,305 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2025-09-03 00:53:08,310 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2025-09-03 00:53:08,642 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-09-03 00:53:08,643 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2025-09-03 00:53:08,647 [ scc.git] DEBUG ## Unique users: []
2025-09-03 00:53:08,647 [ scc.git] DEBUG Get sha1 of %s
2025-09-03 00:53:08,648 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:53:08,650 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2025-09-03 00:53:08,668 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:53:08,670 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2025-09-03 00:53:08,721 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-03 00:53:08,725 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2025-09-03 00:53:08,725 [ scc.git] DEBUG package.json | 2 +-
2025-09-03 00:53:08,725 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2025-09-03 00:53:08,877 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-03 00:53:08,878 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2025-09-03 00:53:08,890 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:53:08,893 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2025-09-03 00:53:08,993 [ scc.git] DEBUG Auto-merging package-lock.json
2025-09-03 00:53:08,993 [ scc.git] DEBUG Auto-merging package.json
2025-09-03 00:53:08,994 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-03 00:53:08,997 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2025-09-03 00:53:08,997 [ scc.git] DEBUG package.json | 2 +-
2025-09-03 00:53:08,997 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2025-09-03 00:53:09,303 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-03 00:53:09,304 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-09-03 00:53:09,307 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:53:09,309 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-09-03 00:53:09,318 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-03 00:53:09,321 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-09-03 00:53:09,321 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-09-03 00:53:09,703 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-03 00:53:09,704 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-03 00:53:09,744 [ scc.git] DEBUG Get sha1 of %s
2025-09-03 00:53:09,744 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:53:09,747 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-03 00:53:09,785 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-03 00:53:09,789 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f77c24ded50> has no local changes
2025-09-03 00:53:09,789 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#524 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/524/)'
2025-09-03 00:53:09,796 [ scc.git] DEBUG [detached HEAD 6ac1b16] merge master -Dorg -Ssuccess-only
2025-09-03 00:53:09,796 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-03 00:53:09,796 [ scc.repo] DEBUG ## PRs found:
2025-09-03 00:53:10,132 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 2
2025-09-03 00:53:10,132 [ scc.repo] DEBUG ## Branches found:
2025-09-03 00:53:10,132 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-09-03 00:53:10,132 [ scc.git] DEBUG Get sha1 of %s
2025-09-03 00:53:10,132 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:53:10,135 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-03 00:53:10,137 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-03 00:53:10,137 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-03 00:53:10,140 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-03 00:53:10,143 [ scc.git] DEBUG Already up to date.
2025-09-03 00:53:10,143 [ scc.git] DEBUG ## Unique users: []
2025-09-03 00:53:10,143 [ scc.git] DEBUG Get sha1 of %s
2025-09-03 00:53:10,143 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:53:10,145 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-03 00:53:10,185 [ scc.git] DEBUG Get sha1 of %s
2025-09-03 00:53:10,185 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:53:10,187 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-03 00:53:10,225 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-03 00:53:10,229 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f77c1353350> has no local changes
2025-09-03 00:53:10,229 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Generated by OMERO-plugins-push#524 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/524/)'
2025-09-03 00:53:10,235 [ scc.git] DEBUG [detached HEAD d1e40f0] merge master -Dorg -Ssuccess-only
2025-09-03 00:53:10,235 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-03 00:53:10,235 [ scc.repo] DEBUG ## PRs found:
2025-09-03 00:53:10,650 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2025-09-03 00:53:11,144 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33 HTTP/1.1" 200 None
2025-09-03 00:53:11,592 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33/comments HTTP/1.1" 200 None
2025-09-03 00:53:12,095 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-09-03 00:53:12,601 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-03 00:53:13,094 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-03 00:53:13,597 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-09-03 00:53:14,032 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/1122baea98746effd4eb59deed25870f673ce3d3?per_page=1 HTTP/1.1" 200 None
2025-09-03 00:53:14,595 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-09-03 00:53:15,038 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/status HTTP/1.1" 200 None
2025-09-03 00:53:15,039 [ scc.repo] DEBUG - PR 33 jo-mueller 'Add roi to array functions'
2025-09-03 00:53:15,521 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2025-09-03 00:53:15,522 [ scc.repo] DEBUG ## Branches found:
2025-09-03 00:53:15,522 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-09-03 00:53:15,522 [ scc.git] DEBUG Get sha1 of %s
2025-09-03 00:53:15,522 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:53:15,524 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-03 00:53:15,527 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-03 00:53:15,527 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-03 00:53:15,530 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-03 00:53:15,533 [ scc.git] DEBUG Already up to date.
2025-09-03 00:53:15,533 [ scc.git] DEBUG Calling 'git fetch origin pull/33/head'
2025-09-03 00:53:16,457 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2025-09-03 00:53:16,457 [ scc.git] DEBUG * branch refs/pull/33/head -> FETCH_HEAD
2025-09-03 00:53:16,461 [ scc.git] DEBUG ## Unique users: []
2025-09-03 00:53:16,462 [ scc.git] DEBUG Get sha1 of %s
2025-09-03 00:53:16,462 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:53:16,464 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1122baea98746effd4eb59deed25870f673ce3d3'
2025-09-03 00:53:16,467 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:53:16,470 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 33 (Add roi to array functions) 1122baea98746effd4eb59deed25870f673ce3d3'
2025-09-03 00:53:16,478 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-03 00:53:16,481 [ scc.git] DEBUG setup.py | 4 +-
2025-09-03 00:53:16,481 [ scc.git] DEBUG src/omero_rois/__init__.py | 4 +
2025-09-03 00:53:16,481 [ scc.git] DEBUG src/omero_rois/library.py | 204 +++++++++++++++++++++++++++++++++++++++++++--
2025-09-03 00:53:16,481 [ scc.git] DEBUG 3 files changed, 203 insertions(+), 9 deletions(-)
2025-09-03 00:53:16,632 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-03 00:53:16,632 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-03 00:53:16,671 [ scc.git] DEBUG Get sha1 of %s
2025-09-03 00:53:16,671 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:53:16,673 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-03 00:53:16,712 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-03 00:53:16,716 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f77c1344890> has no local changes
2025-09-03 00:53:16,716 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
Generated by OMERO-plugins-push#524 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/524/)'
2025-09-03 00:53:16,722 [ scc.git] DEBUG [detached HEAD 190cf2d] merge master -Dorg -Ssuccess-only
2025-09-03 00:53:16,723 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-03 00:53:16,723 [ scc.repo] DEBUG ## PRs found:
2025-09-03 00:53:17,247 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2025-09-03 00:53:17,706 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2025-09-03 00:53:18,165 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2025-09-03 00:53:18,732 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-09-03 00:53:19,205 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-03 00:53:19,715 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-09-03 00:53:20,134 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2025-09-03 00:53:20,135 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2025-09-03 00:53:20,135 [ scc.repo] DEBUG ## Branches found:
2025-09-03 00:53:20,135 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-09-03 00:53:20,135 [ scc.git] DEBUG Get sha1 of %s
2025-09-03 00:53:20,135 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:53:20,137 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-03 00:53:20,140 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-03 00:53:20,140 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-03 00:53:20,143 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-03 00:53:20,146 [ scc.git] DEBUG Already up to date.
2025-09-03 00:53:20,146 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2025-09-03 00:53:20,551 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2025-09-03 00:53:20,552 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2025-09-03 00:53:20,556 [ scc.git] DEBUG ## Unique users: []
2025-09-03 00:53:20,556 [ scc.git] DEBUG Get sha1 of %s
2025-09-03 00:53:20,556 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:53:20,559 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-09-03 00:53:20,562 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:53:20,564 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-09-03 00:53:20,762 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2025-09-03 00:53:20,762 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2025-09-03 00:53:20,762 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2025-09-03 00:53:20,762 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2025-09-03 00:53:20,762 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2025-09-03 00:53:20,762 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2025-09-03 00:53:20,762 [ scc.git] DEBUG Auto-merging setup.py
2025-09-03 00:53:20,762 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2025-09-03 00:53:20,762 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-09-03 00:53:20,762 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-09-03 00:53:20,765 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2025-09-03 00:53:20,769 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2025-09-03 00:53:20,920 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-03 00:53:20,921 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-09-03 00:53:20,924 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2025-09-03 00:53:20,927 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#524](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/524/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/524/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_signup/signup_settings.py
- omero_signup/views.py
- omero_signup/urls.py
- setup.py
--conflicts
2025-09-03 00:53:20,929 [ scc.config] DEBUG Found github.token
2025-09-03 00:53:20,929 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2025-09-03 00:53:20,929 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-03 00:53:20,967 [ scc.git] DEBUG Get sha1 of %s
2025-09-03 00:53:20,967 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:53:20,970 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-03 00:53:21,007 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-03 00:53:21,011 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f77c12fce10> has no local changes
2025-09-03 00:53:21,011 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#524 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/524/)'
2025-09-03 00:53:21,017 [ scc.git] DEBUG [detached HEAD 27535c6] merge master -Dorg -Ssuccess-only
2025-09-03 00:53:21,017 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-03 00:53:21,017 [ scc.repo] DEBUG ## PRs found:
2025-09-03 00:53:21,483 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2025-09-03 00:53:21,933 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/76 HTTP/1.1" 200 None
2025-09-03 00:53:22,512 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-09-03 00:53:23,030 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-03 00:53:23,478 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-03 00:53:23,917 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-09-03 00:53:24,331 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6?per_page=1 HTTP/1.1" 200 2
2025-09-03 00:53:24,331 [ scc.repo] DEBUG - PR 76 will-moore 'Run cli deps'
2025-09-03 00:53:24,827 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2025-09-03 00:53:25,301 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2025-09-03 00:53:25,831 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None
2025-09-03 00:53:26,296 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-03 00:53:26,782 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-03 00:53:27,260 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73 HTTP/1.1" 200 None
2025-09-03 00:53:27,714 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73/comments HTTP/1.1" 200 None
2025-09-03 00:53:28,177 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12 HTTP/1.1" 200 None
2025-09-03 00:53:28,649 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12/comments HTTP/1.1" 200 None
2025-09-03 00:53:29,149 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-09-03 00:53:29,612 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-03 00:53:30,100 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-09-03 00:53:30,529 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/425319051224e8481afc40083fd9b5db4bc99928?per_page=1 HTTP/1.1" 200 2
2025-09-03 00:53:30,529 [ scc.repo] DEBUG - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-09-03 00:53:30,530 [ scc.repo] DEBUG ## Branches found:
2025-09-03 00:53:30,530 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-09-03 00:53:30,530 [ scc.git] DEBUG Get sha1 of %s
2025-09-03 00:53:30,530 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:53:30,533 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-03 00:53:30,535 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-03 00:53:30,535 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-03 00:53:30,538 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-03 00:53:30,541 [ scc.git] DEBUG Already up to date.
2025-09-03 00:53:30,541 [ scc.git] DEBUG Calling 'git fetch origin pull/12/head'
2025-09-03 00:53:30,867 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-09-03 00:53:30,867 [ scc.git] DEBUG * branch refs/pull/12/head -> FETCH_HEAD
2025-09-03 00:53:30,872 [ scc.git] DEBUG Calling 'git fetch origin pull/76/head'
2025-09-03 00:53:31,205 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-09-03 00:53:31,205 [ scc.git] DEBUG * branch refs/pull/76/head -> FETCH_HEAD
2025-09-03 00:53:31,210 [ scc.git] DEBUG ## Unique users: []
2025-09-03 00:53:31,210 [ scc.git] DEBUG Get sha1 of %s
2025-09-03 00:53:31,210 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:53:31,212 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...425319051224e8481afc40083fd9b5db4bc99928'
2025-09-03 00:53:31,217 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:53:31,219 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 12 (IDR: use downloaded ansible templates & variables to configure infra) 425319051224e8481afc40083fd9b5db4bc99928'
2025-09-03 00:53:31,287 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-03 00:53:31,290 [ scc.git] DEBUG idr-compose.yml | 66 ++++++++++++++
2025-09-03 00:53:31,290 [ scc.git] DEBUG idr-haproxy.yml | 58 +++++++++++++
2025-09-03 00:53:31,290 [ scc.git] DEBUG idr/40-ansible.sh | 7 ++
2025-09-03 00:53:31,290 [ scc.git] DEBUG idr/70-reset-password.sh | 1 +
2025-09-03 00:53:31,290 [ scc.git] DEBUG idr/nginx/conf.d/default.conf | 1 +
2025-09-03 00:53:31,290 [ scc.git] DEBUG idr/nginx/conf.d/example_ssl.conf | 1 +
2025-09-03 00:53:31,290 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cache.conf | 53 +++++++++++
2025-09-03 00:53:31,291 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cachebuster.conf | 114 ++++++++++++++++++++++++
2025-09-03 00:53:31,291 [ scc.git] DEBUG idr/nginx/conf.d/proxy-default.conf | 135 +++++++++++++++++++++++++++++
2025-09-03 00:53:31,291 [ scc.git] DEBUG idr/nginx/conf.d/proxy-omeroreadwrite.conf | 115 ++++++++++++++++++++++++
2025-09-03 00:53:31,291 [ scc.git] DEBUG idr/nginx/conf.d/proxy-redirect.conf | 15 ++++
2025-09-03 00:53:31,291 [ scc.git] DEBUG idr/nginx/conf.d/proxy-upstream.conf | 13 +++
2025-09-03 00:53:31,291 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v0.conf | 26 ++++++
2025-09-03 00:53:31,292 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v1.conf | 30 +++++++
2025-09-03 00:53:31,292 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v2.conf | 30 +++++++
2025-09-03 00:53:31,292 [ scc.git] DEBUG idr/nginx/conf.d/proxy-websockets.conf | 6 ++
2025-09-03 00:53:31,292 [ scc.git] DEBUG idr/nginx/nginx.conf | 53 +++++++++++
2025-09-03 00:53:31,292 [ scc.git] DEBUG idr/omero/Dockerfile | 3 +
2025-09-03 00:53:31,292 [ scc.git] DEBUG idr/omero/playbook.yml | 41 +++++++++
2025-09-03 00:53:31,292 [ scc.git] DEBUG idr/redirect/Dockerfile | 6 ++
2025-09-03 00:53:31,292 [ scc.git] DEBUG idr/web/Dockerfile | 5 ++
2025-09-03 00:53:31,292 [ scc.git] DEBUG idr/web/playbook.yml | 45 ++++++++++
2025-09-03 00:53:31,292 [ scc.git] DEBUG 22 files changed, 824 insertions(+)
2025-09-03 00:53:31,292 [ scc.git] DEBUG create mode 100644 idr-compose.yml
2025-09-03 00:53:31,292 [ scc.git] DEBUG create mode 100644 idr-haproxy.yml
2025-09-03 00:53:31,292 [ scc.git] DEBUG create mode 100755 idr/40-ansible.sh
2025-09-03 00:53:31,292 [ scc.git] DEBUG create mode 100755 idr/70-reset-password.sh
2025-09-03 00:53:31,292 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/default.conf
2025-09-03 00:53:31,292 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/example_ssl.conf
2025-09-03 00:53:31,292 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cache.conf
2025-09-03 00:53:31,292 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cachebuster.conf
2025-09-03 00:53:31,292 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-default.conf
2025-09-03 00:53:31,292 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-omeroreadwrite.conf
2025-09-03 00:53:31,292 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-redirect.conf
2025-09-03 00:53:31,292 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-upstream.conf
2025-09-03 00:53:31,292 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v0.conf
2025-09-03 00:53:31,292 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v1.conf
2025-09-03 00:53:31,292 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v2.conf
2025-09-03 00:53:31,292 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-websockets.conf
2025-09-03 00:53:31,292 [ scc.git] DEBUG create mode 100644 idr/nginx/nginx.conf
2025-09-03 00:53:31,292 [ scc.git] DEBUG create mode 100644 idr/omero/Dockerfile
2025-09-03 00:53:31,292 [ scc.git] DEBUG create mode 100644 idr/omero/playbook.yml
2025-09-03 00:53:31,292 [ scc.git] DEBUG create mode 100644 idr/redirect/Dockerfile
2025-09-03 00:53:31,292 [ scc.git] DEBUG create mode 100644 idr/web/Dockerfile
2025-09-03 00:53:31,292 [ scc.git] DEBUG create mode 100644 idr/web/playbook.yml
2025-09-03 00:53:31,434 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-03 00:53:31,435 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-09-03 00:53:31,439 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:53:31,441 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 76 (Run cli deps) bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-09-03 00:53:31,451 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-03 00:53:31,454 [ scc.git] DEBUG docker | 1 +
2025-09-03 00:53:31,454 [ scc.git] DEBUG 1 file changed, 1 insertion(+)
2025-09-03 00:53:31,833 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-03 00:53:31,834 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-03 00:53:31,872 [ scc.git] DEBUG Get sha1 of %s
2025-09-03 00:53:31,872 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:53:31,875 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-03 00:53:31,913 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-03 00:53:31,917 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f77c1367a10> has no local changes
2025-09-03 00:53:31,917 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
- PR 76 will-moore 'Run cli deps'
Generated by OMERO-plugins-push#524 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/524/)'
2025-09-03 00:53:31,925 [ scc.git] DEBUG [detached HEAD 5845701] merge master -Dorg -Ssuccess-only
2025-09-03 00:53:31,925 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-03 00:53:31,925 [ scc.repo] DEBUG ## PRs found:
2025-09-03 00:53:32,275 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 2
2025-09-03 00:53:32,275 [ scc.repo] DEBUG ## Branches found:
2025-09-03 00:53:32,275 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-09-03 00:53:32,275 [ scc.git] DEBUG Get sha1 of %s
2025-09-03 00:53:32,275 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:53:32,277 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-03 00:53:32,280 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-03 00:53:32,280 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-03 00:53:32,282 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-03 00:53:32,285 [ scc.git] DEBUG Already up to date.
2025-09-03 00:53:32,285 [ scc.git] DEBUG ## Unique users: []
2025-09-03 00:53:32,285 [ scc.git] DEBUG Get sha1 of %s
2025-09-03 00:53:32,285 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:53:32,288 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-03 00:53:32,327 [ scc.git] DEBUG Get sha1 of %s
2025-09-03 00:53:32,327 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:53:32,330 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-03 00:53:32,367 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-03 00:53:32,370 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f77c1353890> has no local changes
2025-09-03 00:53:32,370 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Generated by OMERO-plugins-push#524 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/524/)'
2025-09-03 00:53:32,376 [ scc.git] DEBUG [detached HEAD 8cb44cd] merge master -Dorg -Ssuccess-only
2025-09-03 00:53:32,376 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-03 00:53:32,376 [ scc.repo] DEBUG ## PRs found:
2025-09-03 00:53:32,701 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 2
2025-09-03 00:53:32,701 [ scc.repo] DEBUG ## Branches found:
2025-09-03 00:53:32,701 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-09-03 00:53:32,701 [ scc.git] DEBUG Get sha1 of %s
2025-09-03 00:53:32,701 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:53:32,703 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-03 00:53:32,706 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-03 00:53:32,706 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-03 00:53:32,709 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-03 00:53:32,718 [ scc.git] DEBUG Updating deab817..160d894
2025-09-03 00:53:33,404 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2025-09-03 00:53:33,405 [ scc.git] DEBUG ## Unique users: []
2025-09-03 00:53:33,405 [ scc.git] DEBUG Get sha1 of %s
2025-09-03 00:53:33,405 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:53:33,408 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-03 00:53:33,446 [ scc.git] DEBUG Get sha1 of %s
2025-09-03 00:53:33,446 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:53:33,448 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-03 00:53:33,487 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-03 00:53:33,490 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f77c2540310> has no local changes
2025-09-03 00:53:33,490 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Generated by OMERO-plugins-push#524 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/524/)'
2025-09-03 00:53:33,496 [ scc.git] DEBUG [detached HEAD f0eefc6] merge master -Dorg -Ssuccess-only
2025-09-03 00:53:33,496 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-03 00:53:33,497 [ scc.git] INFO Overriding base-branch from master to main
2025-09-03 00:53:33,497 [ scc.repo] DEBUG ## PRs found:
2025-09-03 00:53:33,921 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2025-09-03 00:53:34,425 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None
2025-09-03 00:53:34,940 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/cf419dd60e4884ee15050271c97a6268e6e998b8 HTTP/1.1" 200 None
2025-09-03 00:53:35,425 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/cf419dd60e4884ee15050271c97a6268e6e998b8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-03 00:53:35,888 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/cf419dd60e4884ee15050271c97a6268e6e998b8/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-03 00:53:36,349 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/cf419dd60e4884ee15050271c97a6268e6e998b8 HTTP/1.1" 200 None
2025-09-03 00:53:36,772 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/cf419dd60e4884ee15050271c97a6268e6e998b8?per_page=1 HTTP/1.1" 200 2
2025-09-03 00:53:36,773 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import'
2025-09-03 00:53:37,278 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/20 HTTP/1.1" 200 None
2025-09-03 00:53:37,729 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/20/comments HTTP/1.1" 200 None
2025-09-03 00:53:38,221 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/76b47bafa934219c6487579e3df167219ea56fec HTTP/1.1" 200 None
2025-09-03 00:53:38,687 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/76b47bafa934219c6487579e3df167219ea56fec/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-03 00:53:39,147 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/76b47bafa934219c6487579e3df167219ea56fec/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-03 00:53:39,695 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/76b47bafa934219c6487579e3df167219ea56fec HTTP/1.1" 200 None
2025-09-03 00:53:40,129 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/76b47bafa934219c6487579e3df167219ea56fec?per_page=1 HTTP/1.1" 200 2
2025-09-03 00:53:40,129 [ scc.repo] DEBUG - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2025-09-03 00:53:40,604 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/18 HTTP/1.1" 200 None
2025-09-03 00:53:41,074 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/18/comments HTTP/1.1" 200 None
2025-09-03 00:53:41,570 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec HTTP/1.1" 200 None
2025-09-03 00:53:42,053 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-03 00:53:42,526 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-03 00:53:43,103 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2025-09-03 00:53:43,560 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2025-09-03 00:53:44,015 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2025-09-03 00:53:44,551 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-09-03 00:53:44,991 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-03 00:53:45,498 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-09-03 00:53:45,935 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2025-09-03 00:53:45,935 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-09-03 00:53:45,935 [ scc.repo] DEBUG ## Branches found:
2025-09-03 00:53:45,935 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-09-03 00:53:45,936 [ scc.git] DEBUG Get sha1 of %s
2025-09-03 00:53:45,936 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:53:45,938 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2025-09-03 00:53:45,941 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-03 00:53:45,941 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2025-09-03 00:53:45,944 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2025-09-03 00:53:45,947 [ scc.git] DEBUG Already up to date.
2025-09-03 00:53:45,947 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2025-09-03 00:53:46,358 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-09-03 00:53:46,358 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2025-09-03 00:53:46,363 [ scc.git] DEBUG Calling 'git fetch origin pull/20/head'
2025-09-03 00:53:46,647 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-09-03 00:53:46,647 [ scc.git] DEBUG * branch refs/pull/20/head -> FETCH_HEAD
2025-09-03 00:53:46,651 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head'
2025-09-03 00:53:47,550 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-09-03 00:53:47,550 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD
2025-09-03 00:53:47,555 [ scc.git] DEBUG ## Unique users: []
2025-09-03 00:53:47,555 [ scc.git] DEBUG Get sha1 of %s
2025-09-03 00:53:47,555 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:53:47,558 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-09-03 00:53:47,561 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:53:47,563 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-09-03 00:53:47,623 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2025-09-03 00:53:47,623 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2025-09-03 00:53:47,623 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-09-03 00:53:47,623 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-09-03 00:53:47,626 [ scc.git] DEBUG Calling 'git reset --hard 8f3c31388de8a7c44f18a6f0e20ea41d35fae041'
2025-09-03 00:53:47,630 [ scc.git] DEBUG HEAD is now at 8f3c313 Merge pull request #17 from jburel/build
2025-09-03 00:53:47,775 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-03 00:53:47,776 [ scc.git] DEBUG Calling 'git merge-base 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-09-03 00:53:47,779 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..8f3c31388de8a7c44f18a6f0e20ea41d35fae041'
2025-09-03 00:53:47,782 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#524](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/524/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/524/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2025-09-03 00:53:47,784 [ scc.config] DEBUG Found github.token
2025-09-03 00:53:47,784 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2025-09-03 00:53:47,784 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...76b47bafa934219c6487579e3df167219ea56fec'
2025-09-03 00:53:47,787 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:53:47,789 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 20 (Use zarr_format=2 for .zarray and chunk endpoints) 76b47bafa934219c6487579e3df167219ea56fec'
2025-09-03 00:53:47,797 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-03 00:53:47,800 [ scc.git] DEBUG omero_web_zarr/views.py | 3 ++-
2025-09-03 00:53:47,800 [ scc.git] DEBUG 1 file changed, 2 insertions(+), 1 deletion(-)
2025-09-03 00:53:48,183 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-03 00:53:48,183 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...cf419dd60e4884ee15050271c97a6268e6e998b8'
2025-09-03 00:53:48,186 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:53:48,189 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) cf419dd60e4884ee15050271c97a6268e6e998b8'
2025-09-03 00:53:48,215 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2025-09-03 00:53:48,216 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-03 00:53:48,219 [ scc.git] DEBUG README.rst | 3 +
2025-09-03 00:53:48,219 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++
2025-09-03 00:53:48,219 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 +
2025-09-03 00:53:48,219 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++-
2025-09-03 00:53:48,219 [ scc.git] DEBUG setup.py | 5 +-
2025-09-03 00:53:48,219 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-)
2025-09-03 00:53:48,219 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html
2025-09-03 00:53:48,572 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-03 00:53:48,573 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-03 00:53:48,612 [ scc.git] DEBUG Get sha1 of %s
2025-09-03 00:53:48,612 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:53:48,614 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-03 00:53:48,652 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-03 00:53:48,655 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f77c1377d90> has no local changes
2025-09-03 00:53:48,655 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 18 will-moore 'Build' (status: failure)
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Already up to date.
Merged PRs:
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#524 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/524/)'
2025-09-03 00:53:48,662 [ scc.git] DEBUG [detached HEAD dadbefd] merge master -Dorg -Ssuccess-only
2025-09-03 00:53:48,662 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-03 00:53:48,662 [ scc.repo] DEBUG ## PRs found:
2025-09-03 00:53:48,998 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 2
2025-09-03 00:53:48,998 [ scc.repo] DEBUG ## Branches found:
2025-09-03 00:53:48,998 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-09-03 00:53:48,999 [ scc.git] DEBUG Get sha1 of %s
2025-09-03 00:53:48,999 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:53:49,001 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-03 00:53:49,003 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-03 00:53:49,003 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-03 00:53:49,006 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-03 00:53:49,009 [ scc.git] DEBUG Already up to date.
2025-09-03 00:53:49,009 [ scc.git] DEBUG ## Unique users: []
2025-09-03 00:53:49,009 [ scc.git] DEBUG Get sha1 of %s
2025-09-03 00:53:49,009 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:53:49,012 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-03 00:53:49,052 [ scc.git] DEBUG Get sha1 of %s
2025-09-03 00:53:49,052 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:53:49,054 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-03 00:53:49,093 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-03 00:53:49,096 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f77c13aaa50> has no local changes
2025-09-03 00:53:49,096 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Generated by OMERO-plugins-push#524 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/524/)'
2025-09-03 00:53:49,102 [ scc.git] DEBUG [detached HEAD 49bb3f4] merge master -Dorg -Ssuccess-only
2025-09-03 00:53:49,102 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-03 00:53:49,103 [ scc.repo] DEBUG ## PRs found:
2025-09-03 00:53:49,418 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 2
2025-09-03 00:53:49,418 [ scc.repo] DEBUG ## Branches found:
2025-09-03 00:53:49,418 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-09-03 00:53:49,418 [ scc.git] DEBUG Get sha1 of %s
2025-09-03 00:53:49,418 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:53:49,420 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-03 00:53:49,423 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-03 00:53:49,423 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-03 00:53:49,426 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-03 00:53:49,429 [ scc.git] DEBUG Already up to date.
2025-09-03 00:53:49,429 [ scc.git] DEBUG ## Unique users: []
2025-09-03 00:53:49,429 [ scc.git] DEBUG Get sha1 of %s
2025-09-03 00:53:49,429 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:53:49,431 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-03 00:53:49,471 [ scc.git] DEBUG Get sha1 of %s
2025-09-03 00:53:49,471 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:53:49,473 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-03 00:53:49,512 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-03 00:53:49,516 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f77c13cb490> has no local changes
2025-09-03 00:53:49,516 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Generated by OMERO-plugins-push#524 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/524/)'
2025-09-03 00:53:49,523 [ scc.git] DEBUG [detached HEAD a02c5f3] merge master -Dorg -Ssuccess-only
2025-09-03 00:53:49,523 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-03 00:53:49,523 [ scc.repo] DEBUG ## PRs found:
2025-09-03 00:53:49,906 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 None
2025-09-03 00:53:50,389 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100 HTTP/1.1" 200 None
2025-09-03 00:53:50,898 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100/comments HTTP/1.1" 200 None
2025-09-03 00:53:51,403 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-09-03 00:53:51,853 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-03 00:53:52,306 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-09-03 00:53:52,729 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/statuses/b4abacf0cb9b7aee150761d320bdbb80762cd6e7?per_page=1 HTTP/1.1" 200 2
2025-09-03 00:53:52,729 [ scc.repo] DEBUG - PR 100 dominikl 'Run tests properly'
2025-09-03 00:53:52,729 [ scc.repo] DEBUG ## Branches found:
2025-09-03 00:53:52,729 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-09-03 00:53:52,729 [ scc.git] DEBUG Get sha1 of %s
2025-09-03 00:53:52,729 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:53:52,732 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-03 00:53:52,734 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-03 00:53:52,734 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-03 00:53:52,737 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-03 00:53:52,740 [ scc.git] DEBUG Already up to date.
2025-09-03 00:53:52,740 [ scc.git] DEBUG Calling 'git fetch origin pull/100/head'
2025-09-03 00:53:53,278 [ scc.git] DEBUG From https://github.com/ome/rOMERO-gateway
2025-09-03 00:53:53,278 [ scc.git] DEBUG * branch refs/pull/100/head -> FETCH_HEAD
2025-09-03 00:53:53,282 [ scc.git] DEBUG ## Unique users: []
2025-09-03 00:53:53,282 [ scc.git] DEBUG Get sha1 of %s
2025-09-03 00:53:53,282 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:53:53,284 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-09-03 00:53:53,287 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:53:53,290 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 100 (Run tests properly) b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-09-03 00:53:53,469 [ scc.git] DEBUG Auto-merging Dockerfile
2025-09-03 00:53:53,469 [ scc.git] DEBUG CONFLICT (content): Merge conflict in Dockerfile
2025-09-03 00:53:53,470 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-09-03 00:53:53,470 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-09-03 00:53:53,473 [ scc.git] DEBUG Calling 'git reset --hard 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-09-03 00:53:53,478 [ scc.git] DEBUG HEAD is now at 7b5d64d Merge pull request #106 from dominikl/add_examples_2
2025-09-03 00:53:53,634 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-03 00:53:53,635 [ scc.git] DEBUG Calling 'git merge-base 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-09-03 00:53:53,638 [ scc.git] DEBUG Calling 'git diff --name-only 8b424d2d21f70d07729c4da38a9241b9a9f483be..7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-09-03 00:53:53,641 [ scc.git] INFO - PR 100 dominikl 'Run tests properly'
Conflicting PR. Removed from build [OMERO-plugins-push#524](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/524/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/524/consoleText) for more details.
Possible conflicts:
- Upstream changes
- Dockerfile
--conflicts
2025-09-03 00:53:53,643 [ scc.config] DEBUG Found github.token
2025-09-03 00:53:53,643 [ scc.git] DEBUG Not adding comment to issue #100, already --conflicts.
2025-09-03 00:53:53,643 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-03 00:53:53,681 [ scc.git] DEBUG Get sha1 of %s
2025-09-03 00:53:53,682 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:53:53,684 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-03 00:53:53,721 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-03 00:53:53,725 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f77c13bce90> has no local changes
2025-09-03 00:53:53,725 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Generated by OMERO-plugins-push#524 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/524/)'
2025-09-03 00:53:53,731 [ scc.git] DEBUG [detached HEAD 88fb419] merge master -Dorg -Ssuccess-only
2025-09-03 00:53:53,732 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-03 00:53:53,732 [ scc.git] INFO Overriding base-branch from master to develop
2025-09-03 00:53:53,732 [ scc.repo] DEBUG ## PRs found:
2025-09-03 00:53:54,202 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2025-09-03 00:53:54,692 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223 HTTP/1.1" 200 None
2025-09-03 00:53:55,137 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223/comments HTTP/1.1" 200 None
2025-09-03 00:53:55,714 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-09-03 00:53:56,184 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-03 00:53:56,652 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-03 00:53:57,169 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-09-03 00:53:57,590 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/d8b2bbd6f5066de883a41ba5338662d60472b0d8?per_page=1 HTTP/1.1" 200 2
2025-09-03 00:53:57,590 [ scc.repo] DEBUG - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-09-03 00:53:58,089 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202 HTTP/1.1" 200 None
2025-09-03 00:53:58,539 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202/comments HTTP/1.1" 200 None
2025-09-03 00:53:59,001 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-09-03 00:53:59,446 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-03 00:53:59,875 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-09-03 00:54:00,286 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/1fd6030669613cdb8879cfe6395db8c820fdcf19?per_page=1 HTTP/1.1" 200 2
2025-09-03 00:54:00,286 [ scc.repo] DEBUG - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-09-03 00:54:00,831 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None
2025-09-03 00:54:01,306 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None
2025-09-03 00:54:01,786 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103 HTTP/1.1" 200 None
2025-09-03 00:54:02,571 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103/comments HTTP/1.1" 200 None
2025-09-03 00:54:02,573 [ scc.repo] DEBUG ## Branches found:
2025-09-03 00:54:02,573 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-09-03 00:54:02,573 [ scc.git] DEBUG Get sha1 of %s
2025-09-03 00:54:02,573 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:54:02,576 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2025-09-03 00:54:02,579 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-03 00:54:02,579 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2025-09-03 00:54:02,582 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2025-09-03 00:54:02,592 [ scc.git] DEBUG Updating 4b4c755..573db34
2025-09-03 00:54:03,213 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2025-09-03 00:54:03,945 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2025-09-03 00:54:03,946 [ scc.git] DEBUG Calling 'git fetch origin pull/202/head'
2025-09-03 00:54:05,006 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-09-03 00:54:05,006 [ scc.git] DEBUG * branch refs/pull/202/head -> FETCH_HEAD
2025-09-03 00:54:05,011 [ scc.git] DEBUG Calling 'git fetch origin pull/223/head'
2025-09-03 00:54:05,727 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-09-03 00:54:05,727 [ scc.git] DEBUG * branch refs/pull/223/head -> FETCH_HEAD
2025-09-03 00:54:05,732 [ scc.git] DEBUG ## Unique users: []
2025-09-03 00:54:05,732 [ scc.git] DEBUG Get sha1 of %s
2025-09-03 00:54:05,732 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:54:05,734 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-09-03 00:54:05,740 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:54:05,742 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 202 (Add Plate support to KeyVal_to_csv.py) 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-09-03 00:54:05,893 [ scc.git] DEBUG CONFLICT (modify/delete): omero/annotation_scripts/KeyVal_to_csv.py deleted in HEAD and modified in 1fd6030669613cdb8879cfe6395db8c820fdcf19. Version 1fd6030669613cdb8879cfe6395db8c820fdcf19 of omero/annotation_scripts/KeyVal_to_csv.py left in tree.
2025-09-03 00:54:05,894 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-09-03 00:54:05,894 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-09-03 00:54:05,897 [ scc.git] DEBUG Calling 'git reset --hard 573db340d5d1429fa17c7e486206948412a7c150'
2025-09-03 00:54:05,901 [ scc.git] DEBUG HEAD is now at 573db34 Bump version: 5.9.1 → 5.9.2.dev0
2025-09-03 00:54:06,038 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-03 00:54:06,038 [ scc.git] DEBUG Calling 'git merge-base 573db340d5d1429fa17c7e486206948412a7c150 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-09-03 00:54:06,044 [ scc.git] DEBUG Calling 'git diff --name-only a90f59802f6752ad74badec5c0c1d6b0c9c43b15..573db340d5d1429fa17c7e486206948412a7c150'
2025-09-03 00:54:06,048 [ scc.git] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Conflicting PR. Removed from build [OMERO-plugins-push#524](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/524/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/524/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero/annotation_scripts/KeyVal_to_csv.py
--conflicts
2025-09-03 00:54:06,050 [ scc.config] DEBUG Found github.token
2025-09-03 00:54:06,050 [ scc.git] DEBUG Not adding comment to issue #202, already --conflicts.
2025-09-03 00:54:06,050 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-09-03 00:54:06,055 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:54:06,057 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 223 (don't attempt ROI stats on big images) d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-09-03 00:54:06,067 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-03 00:54:06,071 [ scc.git] DEBUG omero/export_scripts/Batch_ROI_Export.py | 9 ++++++++-
2025-09-03 00:54:06,071 [ scc.git] DEBUG 1 file changed, 8 insertions(+), 1 deletion(-)
2025-09-03 00:54:06,432 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-03 00:54:06,432 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-03 00:54:06,473 [ scc.git] DEBUG Get sha1 of %s
2025-09-03 00:54:06,473 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-03 00:54:06,476 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-03 00:54:06,515 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-03 00:54:06,519 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f77c13d75d0> has no local changes
2025-09-03 00:54:06,519 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..573db34
Previously merged:
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#524 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/524/)'
2025-09-03 00:54:06,526 [ scc.git] DEBUG [detached HEAD 475c36b] merge master -Dorg -Ssuccess-only
2025-09-03 00:54:06,526 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-03 00:54:06,526 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-03 00:54:06,605 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2025-09-03 00:54:06,839 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-03 00:54:06,844 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2025-09-03 00:54:06,846 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2025-09-03 00:54:07,263 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-03 00:54:07,267 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2025-09-03 00:54:07,270 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2025-09-03 00:54:07,693 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-03 00:54:07,698 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2025-09-03 00:54:07,701 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2025-09-03 00:54:08,103 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-03 00:54:08,110 [ scc.config] DEBUG Found submodule.omero-figure.url
2025-09-03 00:54:08,505 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-03 00:54:08,510 [ scc.config] DEBUG Found submodule.omero-figure.branch
2025-09-03 00:54:08,512 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2025-09-03 00:54:08,916 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-03 00:54:08,921 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2025-09-03 00:54:08,923 [ scc.config] DEBUG Found submodule.omero-gallery.url
2025-09-03 00:54:09,331 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-03 00:54:09,336 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2025-09-03 00:54:09,338 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2025-09-03 00:54:09,732 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-03 00:54:09,738 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2025-09-03 00:54:09,740 [ scc.config] DEBUG Found submodule.omero-mapr.url
2025-09-03 00:54:10,125 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-03 00:54:10,130 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2025-09-03 00:54:10,132 [ scc.config] DEBUG Found submodule.omero-metadata.url
2025-09-03 00:54:10,519 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-03 00:54:10,524 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2025-09-03 00:54:10,526 [ scc.config] DEBUG Found submodule.omero-parade.url
2025-09-03 00:54:10,930 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-03 00:54:10,935 [ scc.config] DEBUG Found submodule.omero-parade.branch
2025-09-03 00:54:10,937 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2025-09-03 00:54:11,350 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-03 00:54:11,356 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2025-09-03 00:54:11,358 [ scc.config] DEBUG Found submodule.omero-rois.url
2025-09-03 00:54:11,746 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-03 00:54:11,754 [ scc.config] DEBUG Found submodule.omero-signup.url
2025-09-03 00:54:12,139 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-03 00:54:12,146 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2025-09-03 00:54:12,540 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-03 00:54:12,546 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2025-09-03 00:54:12,548 [ scc.config] DEBUG Found submodule.omero-upload.url
2025-09-03 00:54:12,944 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-03 00:54:12,952 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2025-09-03 00:54:13,329 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-03 00:54:13,338 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2025-09-03 00:54:13,722 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-03 00:54:13,728 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2025-09-03 00:54:13,730 [ scc.config] DEBUG Found submodule.omero-weberror.url
2025-09-03 00:54:14,131 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-03 00:54:14,136 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2025-09-03 00:54:14,137 [ scc.config] DEBUG Found submodule.omero-webtest.url
2025-09-03 00:54:14,529 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-03 00:54:14,534 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2025-09-03 00:54:14,536 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2025-09-03 00:54:14,918 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-03 00:54:14,923 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2025-09-03 00:54:14,925 [ scc.config] DEBUG Found submodule.scripts.url
2025-09-03 00:54:15,344 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-03 00:54:15,348 [ scc.config] DEBUG Found submodule.scripts.branch
2025-09-03 00:54:15,349 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-03 00:54:15,437 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f77c4df7150> has local changes
2025-09-03 00:54:15,437 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Repository: ome/omero-cli-render
Excluded PRs:
- PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Already up to date.
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
- PR 69 dominikl 'Fix help text for impo/export commands'
- PR 71 dominikl 'Escape slash character in image names'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 174 will-moore 'Skip wells' (stage: draft)
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (exclude comment)
- PR 170 will-moore 'Use ome zarr models py' (stage: draft)
- PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
- PR 167 dominikl 'Add extinfo command' (stage: draft)
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..f7eea7c
Previously merged:
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
- PR 180 will-moore 'Register command'
Repository: ome/omero-figure
Excluded PRs:
- PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
- PR 619 will-moore 'OME-Zarr support' (stage: draft)
- PR 543 will-moore 'Plate well labels' (exclude comment)
Updating 9cc36cde..d2c6f5bc
Previously merged:
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 600 Rdornier 'Label on rois'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 612 will-moore 'Script version'
- PR 639 dependabot[bot] 'Bump vite from 6.2.6 to 6.2.7'
Conflicting PRs (not included):
- PR 616 Rdornier 'Fix labels around border'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 637 Rdornier 'Fix scalebar position'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..bb94cf8
Previously merged:
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
Conflicting PRs (not included):
- PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
Repository: ome/omero-signup
Already up to date.
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
- PR 76 will-moore 'Run cli deps'
Repository: ome/omero-upload
Already up to date.
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 18 will-moore 'Build' (status: failure)
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Already up to date.
Merged PRs:
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Repository: openmicroscopy/omero-webtest
Already up to date.
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..573db34
Previously merged:
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#524 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/524/)'
2025-09-03 00:54:15,451 [ scc.git] DEBUG [detached HEAD 1e112c5] merge master -Dorg -Ssuccess-only
2025-09-03 00:54:15,451 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-)
2025-09-03 00:54:15,451 [ scc.merge] INFO Repository: ome/omero-plugins
2025-09-03 00:54:15,451 [ scc.merge] INFO Already up to date.
2025-09-03 00:54:15,451 [ scc.merge] INFO
2025-09-03 00:54:15,451 [ scc.merge] INFO Merged PRs:
2025-09-03 00:54:15,451 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2025-09-03 00:54:15,451 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2025-09-03 00:54:15,451 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2025-09-03 00:54:15,451 [ scc.merge] INFO
2025-09-03 00:54:15,451 [ scc.merge] INFO Repository: ome/minimal-omero-client
2025-09-03 00:54:15,451 [ scc.merge] INFO Already up to date.
2025-09-03 00:54:15,452 [ scc.merge] INFO
2025-09-03 00:54:15,452 [ scc.merge] INFO
2025-09-03 00:54:15,452 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2025-09-03 00:54:15,452 [ scc.merge] INFO Excluded PRs:
2025-09-03 00:54:15,452 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2025-09-03 00:54:15,452 [ scc.merge] INFO Already up to date.
2025-09-03 00:54:15,452 [ scc.merge] INFO
2025-09-03 00:54:15,452 [ scc.merge] INFO
2025-09-03 00:54:15,452 [ scc.merge] INFO Repository: ome/omero-cli-render
2025-09-03 00:54:15,452 [ scc.merge] INFO Excluded PRs:
2025-09-03 00:54:15,452 [ scc.merge] INFO - PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
2025-09-03 00:54:15,452 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2025-09-03 00:54:15,452 [ scc.merge] INFO Already up to date.
2025-09-03 00:54:15,452 [ scc.merge] INFO
2025-09-03 00:54:15,452 [ scc.merge] INFO Merged PRs:
2025-09-03 00:54:15,452 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2025-09-03 00:54:15,452 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2025-09-03 00:54:15,452 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2025-09-03 00:54:15,452 [ scc.merge] INFO
2025-09-03 00:54:15,452 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2025-09-03 00:54:15,452 [ scc.merge] INFO Excluded PRs:
2025-09-03 00:54:15,452 [ scc.merge] INFO - PR 174 will-moore 'Skip wells' (stage: draft)
2025-09-03 00:54:15,452 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (exclude comment)
2025-09-03 00:54:15,452 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft)
2025-09-03 00:54:15,452 [ scc.merge] INFO - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
2025-09-03 00:54:15,452 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft)
2025-09-03 00:54:15,452 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2025-09-03 00:54:15,452 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-09-03 00:54:15,452 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2025-09-03 00:54:15,452 [ scc.merge] INFO Updating 11d3587..f7eea7c
2025-09-03 00:54:15,452 [ scc.merge] INFO Previously merged:
2025-09-03 00:54:15,452 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2025-09-03 00:54:15,452 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2025-09-03 00:54:15,452 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2025-09-03 00:54:15,452 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2025-09-03 00:54:15,452 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2025-09-03 00:54:15,453 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2025-09-03 00:54:15,453 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-03 00:54:15,453 [ scc.merge] INFO
2025-09-03 00:54:15,453 [ scc.merge] INFO Merged PRs:
2025-09-03 00:54:15,453 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2025-09-03 00:54:15,453 [ scc.merge] INFO - PR 180 will-moore 'Register command'
2025-09-03 00:54:15,453 [ scc.merge] INFO
2025-09-03 00:54:15,453 [ scc.merge] INFO Repository: ome/omero-figure
2025-09-03 00:54:15,453 [ scc.merge] INFO Excluded PRs:
2025-09-03 00:54:15,453 [ scc.merge] INFO - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
2025-09-03 00:54:15,453 [ scc.merge] INFO - PR 619 will-moore 'OME-Zarr support' (stage: draft)
2025-09-03 00:54:15,453 [ scc.merge] INFO - PR 543 will-moore 'Plate well labels' (exclude comment)
2025-09-03 00:54:15,453 [ scc.merge] INFO Updating 9cc36cde..d2c6f5bc
2025-09-03 00:54:15,453 [ scc.merge] INFO Previously merged:
2025-09-03 00:54:15,453 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2025-09-03 00:54:15,453 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2025-09-03 00:54:15,453 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2025-09-03 00:54:15,453 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2025-09-03 00:54:15,453 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-03 00:54:15,453 [ scc.merge] INFO
2025-09-03 00:54:15,453 [ scc.merge] INFO Merged PRs:
2025-09-03 00:54:15,453 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2025-09-03 00:54:15,453 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2025-09-03 00:54:15,453 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2025-09-03 00:54:15,453 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2025-09-03 00:54:15,453 [ scc.merge] INFO - PR 639 dependabot[bot] 'Bump vite from 6.2.6 to 6.2.7'
2025-09-03 00:54:15,453 [ scc.merge] INFO
2025-09-03 00:54:15,453 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-03 00:54:15,453 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2025-09-03 00:54:15,453 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2025-09-03 00:54:15,453 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2025-09-03 00:54:15,453 [ scc.merge] INFO
2025-09-03 00:54:15,453 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2025-09-03 00:54:15,453 [ scc.merge] INFO Already up to date.
2025-09-03 00:54:15,453 [ scc.merge] INFO
2025-09-03 00:54:15,453 [ scc.merge] INFO Merged PRs:
2025-09-03 00:54:15,453 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2025-09-03 00:54:15,453 [ scc.merge] INFO
2025-09-03 00:54:15,454 [ scc.merge] INFO Repository: ome/omero-gallery
2025-09-03 00:54:15,454 [ scc.merge] INFO Already up to date.
2025-09-03 00:54:15,454 [ scc.merge] INFO
2025-09-03 00:54:15,454 [ scc.merge] INFO Merged PRs:
2025-09-03 00:54:15,454 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2025-09-03 00:54:15,454 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2025-09-03 00:54:15,454 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2025-09-03 00:54:15,454 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2025-09-03 00:54:15,454 [ scc.merge] INFO
2025-09-03 00:54:15,454 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-03 00:54:15,454 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2025-09-03 00:54:15,454 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2025-09-03 00:54:15,454 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2025-09-03 00:54:15,454 [ scc.merge] INFO
2025-09-03 00:54:15,454 [ scc.merge] INFO Repository: ome/omero-iviewer
2025-09-03 00:54:15,454 [ scc.merge] INFO Excluded PRs:
2025-09-03 00:54:15,454 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
2025-09-03 00:54:15,454 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
2025-09-03 00:54:15,454 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2025-09-03 00:54:15,454 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2025-09-03 00:54:15,454 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure)
2025-09-03 00:54:15,454 [ scc.merge] INFO Updating 7a798ce..bb94cf8
2025-09-03 00:54:15,454 [ scc.merge] INFO Previously merged:
2025-09-03 00:54:15,454 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-03 00:54:15,454 [ scc.merge] INFO
2025-09-03 00:54:15,454 [ scc.merge] INFO Merged PRs:
2025-09-03 00:54:15,454 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix'
2025-09-03 00:54:15,454 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2025-09-03 00:54:15,454 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2025-09-03 00:54:15,454 [ scc.merge] INFO - PR 499 dependabot[bot] 'Bump nanoid and mocha'
2025-09-03 00:54:15,454 [ scc.merge] INFO
2025-09-03 00:54:15,454 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-03 00:54:15,454 [ scc.merge] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
2025-09-03 00:54:15,454 [ scc.merge] INFO
2025-09-03 00:54:15,454 [ scc.merge] INFO Repository: ome/omero-mapr
2025-09-03 00:54:15,454 [ scc.merge] INFO Excluded PRs:
2025-09-03 00:54:15,454 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2025-09-03 00:54:15,455 [ scc.merge] INFO Already up to date.
2025-09-03 00:54:15,455 [ scc.merge] INFO
2025-09-03 00:54:15,455 [ scc.merge] INFO Merged PRs:
2025-09-03 00:54:15,455 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient'
2025-09-03 00:54:15,455 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-03 00:54:15,455 [ scc.merge] INFO
2025-09-03 00:54:15,455 [ scc.merge] INFO Repository: ome/omero-metadata
2025-09-03 00:54:15,455 [ scc.merge] INFO Updating 3cd120c..55060a2
2025-09-03 00:54:15,455 [ scc.merge] INFO Previously merged:
2025-09-03 00:54:15,455 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-03 00:54:15,455 [ scc.merge] INFO
2025-09-03 00:54:15,455 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-03 00:54:15,455 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-09-03 00:54:15,455 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-09-03 00:54:15,455 [ scc.merge] INFO
2025-09-03 00:54:15,455 [ scc.merge] INFO Repository: ome/omero-parade
2025-09-03 00:54:15,455 [ scc.merge] INFO Excluded PRs:
2025-09-03 00:54:15,455 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2025-09-03 00:54:15,455 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2025-09-03 00:54:15,455 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2025-09-03 00:54:15,455 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2025-09-03 00:54:15,455 [ scc.merge] INFO Already up to date.
2025-09-03 00:54:15,455 [ scc.merge] INFO
2025-09-03 00:54:15,455 [ scc.merge] INFO Merged PRs:
2025-09-03 00:54:15,455 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-09-03 00:54:15,455 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-09-03 00:54:15,455 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-03 00:54:15,455 [ scc.merge] INFO
2025-09-03 00:54:15,455 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2025-09-03 00:54:15,455 [ scc.merge] INFO Already up to date.
2025-09-03 00:54:15,455 [ scc.merge] INFO
2025-09-03 00:54:15,455 [ scc.merge] INFO
2025-09-03 00:54:15,455 [ scc.merge] INFO Repository: ome/omero-rois
2025-09-03 00:54:15,455 [ scc.merge] INFO Excluded PRs:
2025-09-03 00:54:15,455 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-09-03 00:54:15,455 [ scc.merge] INFO Already up to date.
2025-09-03 00:54:15,455 [ scc.merge] INFO
2025-09-03 00:54:15,456 [ scc.merge] INFO Merged PRs:
2025-09-03 00:54:15,456 [ scc.merge] INFO - PR 33 jo-mueller 'Add roi to array functions'
2025-09-03 00:54:15,456 [ scc.merge] INFO
2025-09-03 00:54:15,456 [ scc.merge] INFO Repository: ome/omero-signup
2025-09-03 00:54:15,456 [ scc.merge] INFO Already up to date.
2025-09-03 00:54:15,456 [ scc.merge] INFO
2025-09-03 00:54:15,456 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-03 00:54:15,456 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2025-09-03 00:54:15,456 [ scc.merge] INFO
2025-09-03 00:54:15,456 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2025-09-03 00:54:15,456 [ scc.merge] INFO Excluded PRs:
2025-09-03 00:54:15,456 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2025-09-03 00:54:15,456 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
2025-09-03 00:54:15,456 [ scc.merge] INFO - PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
2025-09-03 00:54:15,456 [ scc.merge] INFO Already up to date.
2025-09-03 00:54:15,456 [ scc.merge] INFO
2025-09-03 00:54:15,456 [ scc.merge] INFO Merged PRs:
2025-09-03 00:54:15,456 [ scc.merge] INFO - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-09-03 00:54:15,456 [ scc.merge] INFO - PR 76 will-moore 'Run cli deps'
2025-09-03 00:54:15,456 [ scc.merge] INFO
2025-09-03 00:54:15,456 [ scc.merge] INFO Repository: ome/omero-upload
2025-09-03 00:54:15,456 [ scc.merge] INFO Already up to date.
2025-09-03 00:54:15,456 [ scc.merge] INFO
2025-09-03 00:54:15,456 [ scc.merge] INFO
2025-09-03 00:54:15,456 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2025-09-03 00:54:15,456 [ scc.merge] INFO Updating deab817..160d894
2025-09-03 00:54:15,456 [ scc.merge] INFO Previously merged:
2025-09-03 00:54:15,456 [ scc.merge] INFO - PR 20 jburel 'Build'
2025-09-03 00:54:15,456 [ scc.merge] INFO
2025-09-03 00:54:15,456 [ scc.merge] INFO
2025-09-03 00:54:15,456 [ scc.merge] INFO Repository: ome/omero-web-zarr
2025-09-03 00:54:15,456 [ scc.merge] INFO Excluded PRs:
2025-09-03 00:54:15,456 [ scc.merge] INFO - PR 18 will-moore 'Build' (status: failure)
2025-09-03 00:54:15,456 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2025-09-03 00:54:15,456 [ scc.merge] INFO Already up to date.
2025-09-03 00:54:15,456 [ scc.merge] INFO
2025-09-03 00:54:15,456 [ scc.merge] INFO Merged PRs:
2025-09-03 00:54:15,457 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2025-09-03 00:54:15,457 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import'
2025-09-03 00:54:15,457 [ scc.merge] INFO
2025-09-03 00:54:15,457 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-03 00:54:15,457 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-09-03 00:54:15,457 [ scc.merge] INFO
2025-09-03 00:54:15,457 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2025-09-03 00:54:15,457 [ scc.merge] INFO Already up to date.
2025-09-03 00:54:15,457 [ scc.merge] INFO
2025-09-03 00:54:15,457 [ scc.merge] INFO
2025-09-03 00:54:15,457 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2025-09-03 00:54:15,457 [ scc.merge] INFO Already up to date.
2025-09-03 00:54:15,457 [ scc.merge] INFO
2025-09-03 00:54:15,457 [ scc.merge] INFO
2025-09-03 00:54:15,457 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2025-09-03 00:54:15,457 [ scc.merge] INFO Already up to date.
2025-09-03 00:54:15,457 [ scc.merge] INFO
2025-09-03 00:54:15,457 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-03 00:54:15,457 [ scc.merge] INFO - PR 100 dominikl 'Run tests properly'
2025-09-03 00:54:15,457 [ scc.merge] INFO
2025-09-03 00:54:15,457 [ scc.merge] INFO Repository: ome/scripts
2025-09-03 00:54:15,457 [ scc.merge] INFO Excluded PRs:
2025-09-03 00:54:15,457 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
2025-09-03 00:54:15,457 [ scc.merge] INFO - PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
2025-09-03 00:54:15,457 [ scc.merge] INFO Updating 4b4c755..573db34
2025-09-03 00:54:15,457 [ scc.merge] INFO Previously merged:
2025-09-03 00:54:15,457 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2025-09-03 00:54:15,457 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2025-09-03 00:54:15,457 [ scc.merge] INFO
2025-09-03 00:54:15,457 [ scc.merge] INFO Merged PRs:
2025-09-03 00:54:15,457 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-09-03 00:54:15,457 [ scc.merge] INFO
2025-09-03 00:54:15,457 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-03 00:54:15,457 [ scc.merge] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-09-03 00:54:15,457 [ scc.merge] INFO
2025-09-03 00:54:15,457 [ scc.merge] DEBUG Cleaning remote branches created for merging
2025-09-03 00:54:15,458 [ scc.git] DEBUG Calling 'git remote'
2025-09-03 00:54:15,460 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2025-09-03 00:54:15,460 [ scc.git] DEBUG Calling 'git remote'
2025-09-03 00:54:15,462 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-03 00:54:15,463 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2025-09-03 00:54:15,463 [ scc.git] DEBUG Calling 'git remote'
2025-09-03 00:54:15,465 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-03 00:54:15,465 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2025-09-03 00:54:15,465 [ scc.git] DEBUG Calling 'git remote'
2025-09-03 00:54:15,467 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-03 00:54:15,467 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2025-09-03 00:54:15,467 [ scc.git] DEBUG Calling 'git remote'
2025-09-03 00:54:15,469 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-03 00:54:15,469 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2025-09-03 00:54:15,470 [ scc.git] DEBUG Calling 'git remote'
2025-09-03 00:54:15,472 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-03 00:54:15,472 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2025-09-03 00:54:15,472 [ scc.git] DEBUG Calling 'git remote'
2025-09-03 00:54:15,474 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-03 00:54:15,474 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2025-09-03 00:54:15,474 [ scc.git] DEBUG Calling 'git remote'
2025-09-03 00:54:15,476 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-03 00:54:15,476 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2025-09-03 00:54:15,476 [ scc.git] DEBUG Calling 'git remote'
2025-09-03 00:54:15,478 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-03 00:54:15,478 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2025-09-03 00:54:15,478 [ scc.git] DEBUG Calling 'git remote'
2025-09-03 00:54:15,480 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-03 00:54:15,481 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-09-03 00:54:15,481 [ scc.git] DEBUG Calling 'git remote'
2025-09-03 00:54:15,483 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-03 00:54:15,483 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-09-03 00:54:15,483 [ scc.git] DEBUG Calling 'git remote'
2025-09-03 00:54:15,485 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-03 00:54:15,485 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-09-03 00:54:15,485 [ scc.git] DEBUG Calling 'git remote'
2025-09-03 00:54:15,487 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-03 00:54:15,487 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-09-03 00:54:15,487 [ scc.git] DEBUG Calling 'git remote'
2025-09-03 00:54:15,489 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-03 00:54:15,489 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-09-03 00:54:15,489 [ scc.git] DEBUG Calling 'git remote'
2025-09-03 00:54:15,491 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-03 00:54:15,492 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-09-03 00:54:15,492 [ scc.git] DEBUG Calling 'git remote'
2025-09-03 00:54:15,494 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-03 00:54:15,494 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-09-03 00:54:15,494 [ scc.git] DEBUG Calling 'git remote'
2025-09-03 00:54:15,496 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-03 00:54:15,496 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-09-03 00:54:15,496 [ scc.git] DEBUG Calling 'git remote'
2025-09-03 00:54:15,498 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-03 00:54:15,498 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-09-03 00:54:15,498 [ scc.git] DEBUG Calling 'git remote'
2025-09-03 00:54:15,500 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-03 00:54:15,500 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-09-03 00:54:15,500 [ scc.git] DEBUG Calling 'git remote'
2025-09-03 00:54:15,503 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-03 00:54:15,503 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-09-03 00:54:15,503 [ scc.git] DEBUG Calling 'git remote'
2025-09-03 00:54:15,505 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-03 00:54:15,505 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-09-03 00:54:15,505 [ scc.git] DEBUG Calling 'git remote'
2025-09-03 00:54:15,507 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-03 00:54:15,507 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-09-03 00:54:15,507 [ scc.git] DEBUG Calling 'git remote'
2025-09-03 00:54:15,509 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.10.4-SNAPSHOT
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Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD 24505a2] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798ce
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD cba0515] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2025-09-03 00:55:02,139 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2025-09-03 00:55:11,407 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2025-09-03 00:55:13,869 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-09-03 00:55:18,561 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-09-03 00:55:58,010 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
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