Console Output
Skipping 191 KB..
Full Loglls HTTP/1.1" 200 None
2025-09-10 00:52:47,428 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None
2025-09-10 00:52:47,908 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None
2025-09-10 00:52:48,429 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-09-10 00:52:48,885 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-10 00:52:49,382 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-09-10 00:52:49,831 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2
2025-09-10 00:52:49,832 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-09-10 00:52:50,334 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None
2025-09-10 00:52:50,782 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None
2025-09-10 00:52:51,288 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-09-10 00:52:51,738 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-10 00:52:52,316 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-09-10 00:52:52,729 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2025-09-10 00:52:52,729 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-09-10 00:52:52,729 [ scc.repo] DEBUG ## Branches found:
2025-09-10 00:52:52,729 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-09-10 00:52:52,729 [ scc.git] DEBUG Get sha1 of %s
2025-09-10 00:52:52,729 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:52:52,732 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-10 00:52:52,734 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-10 00:52:52,734 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-10 00:52:52,737 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-10 00:52:52,746 [ scc.git] DEBUG Updating 3cd120c..55060a2
2025-09-10 00:52:53,389 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2025-09-10 00:52:53,390 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2025-09-10 00:52:54,463 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-09-10 00:52:54,464 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2025-09-10 00:52:54,469 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2025-09-10 00:52:55,150 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-09-10 00:52:55,150 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2025-09-10 00:52:55,155 [ scc.git] DEBUG ## Unique users: []
2025-09-10 00:52:55,156 [ scc.git] DEBUG Get sha1 of %s
2025-09-10 00:52:55,156 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:52:55,158 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-09-10 00:52:55,162 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:52:55,165 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-09-10 00:52:55,351 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2025-09-10 00:52:55,351 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2025-09-10 00:52:55,351 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-09-10 00:52:55,352 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-09-10 00:52:55,352 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-09-10 00:52:55,352 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-09-10 00:52:55,355 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-09-10 00:52:55,360 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-09-10 00:52:55,515 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-10 00:52:55,515 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-09-10 00:52:55,520 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501'
2025-09-10 00:52:55,524 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#528](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/528/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/528/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/cli.py
- src/omero_metadata/populate.py
--conflicts
2025-09-10 00:52:55,526 [ scc.config] DEBUG Found github.token
2025-09-10 00:52:55,526 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2025-09-10 00:52:55,526 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2025-09-10 00:52:55,531 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:52:55,533 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2025-09-10 00:52:55,627 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-09-10 00:52:55,627 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-09-10 00:52:55,628 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2025-09-10 00:52:55,628 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-09-10 00:52:55,628 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-09-10 00:52:55,631 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-09-10 00:52:55,636 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-09-10 00:52:55,904 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-10 00:52:55,905 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7'
2025-09-10 00:52:55,910 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501'
2025-09-10 00:52:55,913 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#528](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/528/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/528/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2025-09-10 00:52:55,915 [ scc.config] DEBUG Found github.token
2025-09-10 00:52:55,915 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2025-09-10 00:52:55,915 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-10 00:52:55,955 [ scc.git] DEBUG Get sha1 of %s
2025-09-10 00:52:55,955 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:52:55,957 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-10 00:52:55,996 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-10 00:52:56,000 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f3750d5f6d0> has no local changes
2025-09-10 00:52:56,000 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#528 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/528/)'
2025-09-10 00:52:56,007 [ scc.git] DEBUG [detached HEAD 2958590] merge master -Dorg -Ssuccess-only
2025-09-10 00:52:56,008 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-10 00:52:56,008 [ scc.repo] DEBUG ## PRs found:
2025-09-10 00:52:56,473 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2025-09-10 00:52:56,920 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2025-09-10 00:52:57,442 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-09-10 00:52:57,942 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-10 00:52:58,412 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-10 00:52:58,853 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-09-10 00:52:59,265 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2025-09-10 00:52:59,266 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-10 00:52:59,768 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2025-09-10 00:52:59,769 [ scc.repo] DEBUG # ... Include label: dependencies
2025-09-10 00:53:00,333 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-09-10 00:53:00,894 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-10 00:53:01,591 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-10 00:53:02,068 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-09-10 00:53:02,479 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2025-09-10 00:53:02,479 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-09-10 00:53:02,969 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2025-09-10 00:53:02,970 [ scc.repo] DEBUG # ... Include label: dependencies
2025-09-10 00:53:03,518 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-09-10 00:53:03,989 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-10 00:53:04,476 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-10 00:53:04,971 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-09-10 00:53:05,392 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2025-09-10 00:53:05,392 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-09-10 00:53:05,873 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2025-09-10 00:53:06,348 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2025-09-10 00:53:06,789 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2025-09-10 00:53:07,341 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2025-09-10 00:53:07,788 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2025-09-10 00:53:08,258 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2025-09-10 00:53:08,747 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2025-09-10 00:53:08,748 [ scc.repo] DEBUG ## Branches found:
2025-09-10 00:53:08,748 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-09-10 00:53:08,748 [ scc.git] DEBUG Get sha1 of %s
2025-09-10 00:53:08,748 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:53:08,751 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-10 00:53:08,754 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-10 00:53:08,754 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-10 00:53:08,757 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-10 00:53:08,760 [ scc.git] DEBUG Already up to date.
2025-09-10 00:53:08,760 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2025-09-10 00:53:09,056 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-09-10 00:53:09,056 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2025-09-10 00:53:09,060 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2025-09-10 00:53:09,375 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-09-10 00:53:09,375 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2025-09-10 00:53:09,379 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2025-09-10 00:53:09,692 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-09-10 00:53:09,692 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2025-09-10 00:53:09,697 [ scc.git] DEBUG ## Unique users: []
2025-09-10 00:53:09,697 [ scc.git] DEBUG Get sha1 of %s
2025-09-10 00:53:09,697 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:53:09,699 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2025-09-10 00:53:09,718 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:53:09,720 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2025-09-10 00:53:09,776 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-10 00:53:09,780 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2025-09-10 00:53:09,780 [ scc.git] DEBUG package.json | 2 +-
2025-09-10 00:53:09,780 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2025-09-10 00:53:09,923 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-10 00:53:09,924 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2025-09-10 00:53:09,989 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:53:09,992 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2025-09-10 00:53:10,154 [ scc.git] DEBUG Auto-merging package-lock.json
2025-09-10 00:53:10,154 [ scc.git] DEBUG Auto-merging package.json
2025-09-10 00:53:10,155 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-10 00:53:10,159 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2025-09-10 00:53:10,159 [ scc.git] DEBUG package.json | 2 +-
2025-09-10 00:53:10,159 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2025-09-10 00:53:10,323 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-10 00:53:10,323 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-09-10 00:53:10,327 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:53:10,329 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-09-10 00:53:10,338 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-10 00:53:10,341 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-09-10 00:53:10,341 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-09-10 00:53:10,706 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-10 00:53:10,707 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-10 00:53:10,749 [ scc.git] DEBUG Get sha1 of %s
2025-09-10 00:53:10,749 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:53:10,751 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-10 00:53:10,791 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-10 00:53:10,795 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f3750439ad0> has no local changes
2025-09-10 00:53:10,796 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#528 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/528/)'
2025-09-10 00:53:10,803 [ scc.git] DEBUG [detached HEAD 0dea6e3] merge master -Dorg -Ssuccess-only
2025-09-10 00:53:10,803 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-10 00:53:10,803 [ scc.repo] DEBUG ## PRs found:
2025-09-10 00:53:11,200 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None
2025-09-10 00:53:11,706 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/16 HTTP/1.1" 200 None
2025-09-10 00:53:11,707 [ scc.repo] DEBUG # ... Include label: dependencies
2025-09-10 00:53:12,263 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None
2025-09-10 00:53:12,752 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-10 00:53:13,297 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-10 00:53:13,868 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None
2025-09-10 00:53:14,301 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/5381b9f25e1666d81d236039a1317276291e9b2e?per_page=1 HTTP/1.1" 200 2
2025-09-10 00:53:14,301 [ scc.repo] DEBUG - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-10 00:53:14,301 [ scc.repo] DEBUG ## Branches found:
2025-09-10 00:53:14,301 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-09-10 00:53:14,301 [ scc.git] DEBUG Get sha1 of %s
2025-09-10 00:53:14,301 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:53:14,304 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-10 00:53:14,306 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-10 00:53:14,306 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-10 00:53:14,309 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-10 00:53:14,312 [ scc.git] DEBUG Already up to date.
2025-09-10 00:53:14,312 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head'
2025-09-10 00:53:14,608 [ scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools
2025-09-10 00:53:14,608 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD
2025-09-10 00:53:14,612 [ scc.git] DEBUG ## Unique users: []
2025-09-10 00:53:14,612 [ scc.git] DEBUG Get sha1 of %s
2025-09-10 00:53:14,612 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:53:14,614 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5381b9f25e1666d81d236039a1317276291e9b2e'
2025-09-10 00:53:14,617 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:53:14,619 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 5381b9f25e1666d81d236039a1317276291e9b2e'
2025-09-10 00:53:14,627 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-10 00:53:14,630 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-09-10 00:53:14,630 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-09-10 00:53:14,767 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-10 00:53:14,767 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-10 00:53:14,810 [ scc.git] DEBUG Get sha1 of %s
2025-09-10 00:53:14,810 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:53:14,812 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-10 00:53:14,851 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-10 00:53:14,855 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f3750dc9190> has no local changes
2025-09-10 00:53:14,855 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#528 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/528/)'
2025-09-10 00:53:14,862 [ scc.git] DEBUG [detached HEAD 2bc577b] merge master -Dorg -Ssuccess-only
2025-09-10 00:53:14,862 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-10 00:53:14,862 [ scc.repo] DEBUG ## PRs found:
2025-09-10 00:53:15,351 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2025-09-10 00:53:15,825 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/34 HTTP/1.1" 200 None
2025-09-10 00:53:15,826 [ scc.repo] DEBUG # ... Include label: dependencies
2025-09-10 00:53:16,397 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2025-09-10 00:53:16,880 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-10 00:53:17,381 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-10 00:53:17,839 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2025-09-10 00:53:18,273 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/149bb248277256d589ea0db597c04739e8134301?per_page=1 HTTP/1.1" 200 None
2025-09-10 00:53:18,821 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2025-09-10 00:53:19,261 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/status HTTP/1.1" 200 None
2025-09-10 00:53:19,261 [ scc.repo] DEBUG - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-10 00:53:19,723 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33 HTTP/1.1" 200 None
2025-09-10 00:53:20,197 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33/comments HTTP/1.1" 200 None
2025-09-10 00:53:20,711 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-09-10 00:53:21,179 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-10 00:53:21,656 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-10 00:53:22,098 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-09-10 00:53:22,533 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/1122baea98746effd4eb59deed25870f673ce3d3?per_page=1 HTTP/1.1" 200 None
2025-09-10 00:53:23,064 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-09-10 00:53:23,496 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/status HTTP/1.1" 200 None
2025-09-10 00:53:23,497 [ scc.repo] DEBUG - PR 33 jo-mueller 'Add roi to array functions'
2025-09-10 00:53:23,993 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2025-09-10 00:53:23,993 [ scc.repo] DEBUG ## Branches found:
2025-09-10 00:53:23,993 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-09-10 00:53:23,994 [ scc.git] DEBUG Get sha1 of %s
2025-09-10 00:53:23,994 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:53:23,996 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-10 00:53:23,998 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-10 00:53:23,998 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-10 00:53:24,002 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-10 00:53:24,005 [ scc.git] DEBUG Already up to date.
2025-09-10 00:53:24,005 [ scc.git] DEBUG Calling 'git fetch origin pull/33/head'
2025-09-10 00:53:24,818 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2025-09-10 00:53:24,818 [ scc.git] DEBUG * branch refs/pull/33/head -> FETCH_HEAD
2025-09-10 00:53:24,823 [ scc.git] DEBUG Calling 'git fetch origin pull/34/head'
2025-09-10 00:53:25,108 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2025-09-10 00:53:25,108 [ scc.git] DEBUG * branch refs/pull/34/head -> FETCH_HEAD
2025-09-10 00:53:25,112 [ scc.git] DEBUG ## Unique users: []
2025-09-10 00:53:25,112 [ scc.git] DEBUG Get sha1 of %s
2025-09-10 00:53:25,112 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:53:25,114 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1122baea98746effd4eb59deed25870f673ce3d3'
2025-09-10 00:53:25,117 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:53:25,120 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 33 (Add roi to array functions) 1122baea98746effd4eb59deed25870f673ce3d3'
2025-09-10 00:53:25,128 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-10 00:53:25,131 [ scc.git] DEBUG setup.py | 4 +-
2025-09-10 00:53:25,131 [ scc.git] DEBUG src/omero_rois/__init__.py | 4 +
2025-09-10 00:53:25,131 [ scc.git] DEBUG src/omero_rois/library.py | 204 +++++++++++++++++++++++++++++++++++++++++++--
2025-09-10 00:53:25,131 [ scc.git] DEBUG 3 files changed, 203 insertions(+), 9 deletions(-)
2025-09-10 00:53:25,276 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-10 00:53:25,277 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...149bb248277256d589ea0db597c04739e8134301'
2025-09-10 00:53:25,299 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:53:25,302 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 34 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 149bb248277256d589ea0db597c04739e8134301'
2025-09-10 00:53:25,311 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-10 00:53:25,314 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-09-10 00:53:25,314 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-09-10 00:53:25,668 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-10 00:53:25,668 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-10 00:53:25,711 [ scc.git] DEBUG Get sha1 of %s
2025-09-10 00:53:25,711 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:53:25,713 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-10 00:53:25,754 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-10 00:53:25,758 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f375045db50> has no local changes
2025-09-10 00:53:25,758 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
- PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#528 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/528/)'
2025-09-10 00:53:25,764 [ scc.git] DEBUG [detached HEAD 67920c0] merge master -Dorg -Ssuccess-only
2025-09-10 00:53:25,765 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-10 00:53:25,765 [ scc.repo] DEBUG ## PRs found:
2025-09-10 00:53:26,227 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2025-09-10 00:53:26,697 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/22 HTTP/1.1" 200 None
2025-09-10 00:53:26,698 [ scc.repo] DEBUG # ... Include label: dependencies
2025-09-10 00:53:27,285 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None
2025-09-10 00:53:27,814 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-10 00:53:28,365 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-10 00:53:28,795 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None
2025-09-10 00:53:29,209 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/8b27e47a330555e99e9594f0c4b546946f4f98aa?per_page=1 HTTP/1.1" 200 2
2025-09-10 00:53:29,209 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-10 00:53:29,667 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2025-09-10 00:53:30,138 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2025-09-10 00:53:30,680 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-09-10 00:53:31,134 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-10 00:53:31,691 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-09-10 00:53:32,100 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2025-09-10 00:53:32,100 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2025-09-10 00:53:32,100 [ scc.repo] DEBUG ## Branches found:
2025-09-10 00:53:32,100 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-09-10 00:53:32,100 [ scc.git] DEBUG Get sha1 of %s
2025-09-10 00:53:32,100 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:53:32,103 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-10 00:53:32,105 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-10 00:53:32,105 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-10 00:53:32,108 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-10 00:53:32,111 [ scc.git] DEBUG Already up to date.
2025-09-10 00:53:32,111 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2025-09-10 00:53:32,617 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2025-09-10 00:53:32,617 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2025-09-10 00:53:32,621 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2025-09-10 00:53:32,906 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2025-09-10 00:53:32,906 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2025-09-10 00:53:32,911 [ scc.git] DEBUG ## Unique users: []
2025-09-10 00:53:32,911 [ scc.git] DEBUG Get sha1 of %s
2025-09-10 00:53:32,911 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:53:32,913 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-09-10 00:53:32,917 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:53:32,919 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-09-10 00:53:33,118 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2025-09-10 00:53:33,119 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2025-09-10 00:53:33,119 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2025-09-10 00:53:33,119 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2025-09-10 00:53:33,119 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2025-09-10 00:53:33,119 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2025-09-10 00:53:33,119 [ scc.git] DEBUG Auto-merging setup.py
2025-09-10 00:53:33,119 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2025-09-10 00:53:33,119 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-09-10 00:53:33,119 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-09-10 00:53:33,122 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2025-09-10 00:53:33,126 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2025-09-10 00:53:33,266 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-10 00:53:33,267 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-09-10 00:53:33,270 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2025-09-10 00:53:33,273 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#528](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/528/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/528/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_signup/signup_settings.py
- omero_signup/urls.py
- omero_signup/views.py
- setup.py
--conflicts
2025-09-10 00:53:33,275 [ scc.config] DEBUG Found github.token
2025-09-10 00:53:33,275 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2025-09-10 00:53:33,275 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8b27e47a330555e99e9594f0c4b546946f4f98aa'
2025-09-10 00:53:33,278 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:53:33,281 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8b27e47a330555e99e9594f0c4b546946f4f98aa'
2025-09-10 00:53:33,289 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-10 00:53:33,292 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-09-10 00:53:33,292 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-09-10 00:53:33,670 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-10 00:53:33,670 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-10 00:53:33,713 [ scc.git] DEBUG Get sha1 of %s
2025-09-10 00:53:33,714 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:53:33,716 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-10 00:53:33,756 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-10 00:53:33,760 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f3750474150> has no local changes
2025-09-10 00:53:33,760 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#528 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/528/)'
2025-09-10 00:53:33,767 [ scc.git] DEBUG [detached HEAD e487fa1] merge master -Dorg -Ssuccess-only
2025-09-10 00:53:33,767 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-10 00:53:33,767 [ scc.repo] DEBUG ## PRs found:
2025-09-10 00:53:34,192 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2025-09-10 00:53:34,673 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/76 HTTP/1.1" 200 None
2025-09-10 00:53:35,240 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-09-10 00:53:35,725 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-10 00:53:36,204 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-10 00:53:36,776 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-09-10 00:53:37,176 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6?per_page=1 HTTP/1.1" 200 2
2025-09-10 00:53:37,177 [ scc.repo] DEBUG - PR 76 will-moore 'Run cli deps'
2025-09-10 00:53:37,653 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2025-09-10 00:53:38,098 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2025-09-10 00:53:38,642 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None
2025-09-10 00:53:39,135 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-10 00:53:39,633 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-10 00:53:40,104 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73 HTTP/1.1" 200 None
2025-09-10 00:53:40,568 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73/comments HTTP/1.1" 200 None
2025-09-10 00:53:41,045 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12 HTTP/1.1" 200 None
2025-09-10 00:53:41,485 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12/comments HTTP/1.1" 200 None
2025-09-10 00:53:41,975 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-09-10 00:53:42,430 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-10 00:53:42,959 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-09-10 00:53:43,386 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/425319051224e8481afc40083fd9b5db4bc99928?per_page=1 HTTP/1.1" 200 2
2025-09-10 00:53:43,386 [ scc.repo] DEBUG - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-09-10 00:53:43,386 [ scc.repo] DEBUG ## Branches found:
2025-09-10 00:53:43,386 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-09-10 00:53:43,387 [ scc.git] DEBUG Get sha1 of %s
2025-09-10 00:53:43,387 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:53:43,389 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-10 00:53:43,392 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-10 00:53:43,392 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-10 00:53:43,395 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-10 00:53:43,398 [ scc.git] DEBUG Already up to date.
2025-09-10 00:53:43,398 [ scc.git] DEBUG Calling 'git fetch origin pull/12/head'
2025-09-10 00:53:43,700 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-09-10 00:53:43,700 [ scc.git] DEBUG * branch refs/pull/12/head -> FETCH_HEAD
2025-09-10 00:53:43,704 [ scc.git] DEBUG Calling 'git fetch origin pull/76/head'
2025-09-10 00:53:44,051 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-09-10 00:53:44,051 [ scc.git] DEBUG * branch refs/pull/76/head -> FETCH_HEAD
2025-09-10 00:53:44,055 [ scc.git] DEBUG ## Unique users: []
2025-09-10 00:53:44,055 [ scc.git] DEBUG Get sha1 of %s
2025-09-10 00:53:44,056 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:53:44,058 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...425319051224e8481afc40083fd9b5db4bc99928'
2025-09-10 00:53:44,062 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:53:44,065 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 12 (IDR: use downloaded ansible templates & variables to configure infra) 425319051224e8481afc40083fd9b5db4bc99928'
2025-09-10 00:53:44,163 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-10 00:53:44,167 [ scc.git] DEBUG idr-compose.yml | 66 ++++++++++++++
2025-09-10 00:53:44,167 [ scc.git] DEBUG idr-haproxy.yml | 58 +++++++++++++
2025-09-10 00:53:44,167 [ scc.git] DEBUG idr/40-ansible.sh | 7 ++
2025-09-10 00:53:44,167 [ scc.git] DEBUG idr/70-reset-password.sh | 1 +
2025-09-10 00:53:44,167 [ scc.git] DEBUG idr/nginx/conf.d/default.conf | 1 +
2025-09-10 00:53:44,167 [ scc.git] DEBUG idr/nginx/conf.d/example_ssl.conf | 1 +
2025-09-10 00:53:44,167 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cache.conf | 53 +++++++++++
2025-09-10 00:53:44,168 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cachebuster.conf | 114 ++++++++++++++++++++++++
2025-09-10 00:53:44,168 [ scc.git] DEBUG idr/nginx/conf.d/proxy-default.conf | 135 +++++++++++++++++++++++++++++
2025-09-10 00:53:44,168 [ scc.git] DEBUG idr/nginx/conf.d/proxy-omeroreadwrite.conf | 115 ++++++++++++++++++++++++
2025-09-10 00:53:44,168 [ scc.git] DEBUG idr/nginx/conf.d/proxy-redirect.conf | 15 ++++
2025-09-10 00:53:44,168 [ scc.git] DEBUG idr/nginx/conf.d/proxy-upstream.conf | 13 +++
2025-09-10 00:53:44,168 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v0.conf | 26 ++++++
2025-09-10 00:53:44,169 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v1.conf | 30 +++++++
2025-09-10 00:53:44,169 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v2.conf | 30 +++++++
2025-09-10 00:53:44,169 [ scc.git] DEBUG idr/nginx/conf.d/proxy-websockets.conf | 6 ++
2025-09-10 00:53:44,169 [ scc.git] DEBUG idr/nginx/nginx.conf | 53 +++++++++++
2025-09-10 00:53:44,169 [ scc.git] DEBUG idr/omero/Dockerfile | 3 +
2025-09-10 00:53:44,169 [ scc.git] DEBUG idr/omero/playbook.yml | 41 +++++++++
2025-09-10 00:53:44,169 [ scc.git] DEBUG idr/redirect/Dockerfile | 6 ++
2025-09-10 00:53:44,169 [ scc.git] DEBUG idr/web/Dockerfile | 5 ++
2025-09-10 00:53:44,169 [ scc.git] DEBUG idr/web/playbook.yml | 45 ++++++++++
2025-09-10 00:53:44,169 [ scc.git] DEBUG 22 files changed, 824 insertions(+)
2025-09-10 00:53:44,169 [ scc.git] DEBUG create mode 100644 idr-compose.yml
2025-09-10 00:53:44,169 [ scc.git] DEBUG create mode 100644 idr-haproxy.yml
2025-09-10 00:53:44,169 [ scc.git] DEBUG create mode 100755 idr/40-ansible.sh
2025-09-10 00:53:44,169 [ scc.git] DEBUG create mode 100755 idr/70-reset-password.sh
2025-09-10 00:53:44,169 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/default.conf
2025-09-10 00:53:44,169 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/example_ssl.conf
2025-09-10 00:53:44,169 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cache.conf
2025-09-10 00:53:44,169 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cachebuster.conf
2025-09-10 00:53:44,169 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-default.conf
2025-09-10 00:53:44,169 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-omeroreadwrite.conf
2025-09-10 00:53:44,169 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-redirect.conf
2025-09-10 00:53:44,169 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-upstream.conf
2025-09-10 00:53:44,169 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v0.conf
2025-09-10 00:53:44,169 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v1.conf
2025-09-10 00:53:44,169 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v2.conf
2025-09-10 00:53:44,169 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-websockets.conf
2025-09-10 00:53:44,169 [ scc.git] DEBUG create mode 100644 idr/nginx/nginx.conf
2025-09-10 00:53:44,169 [ scc.git] DEBUG create mode 100644 idr/omero/Dockerfile
2025-09-10 00:53:44,169 [ scc.git] DEBUG create mode 100644 idr/omero/playbook.yml
2025-09-10 00:53:44,169 [ scc.git] DEBUG create mode 100644 idr/redirect/Dockerfile
2025-09-10 00:53:44,169 [ scc.git] DEBUG create mode 100644 idr/web/Dockerfile
2025-09-10 00:53:44,169 [ scc.git] DEBUG create mode 100644 idr/web/playbook.yml
2025-09-10 00:53:44,315 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-10 00:53:44,315 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-09-10 00:53:44,320 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:53:44,322 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 76 (Run cli deps) bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-09-10 00:53:44,332 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-10 00:53:44,335 [ scc.git] DEBUG docker | 1 +
2025-09-10 00:53:44,335 [ scc.git] DEBUG 1 file changed, 1 insertion(+)
2025-09-10 00:53:44,707 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-10 00:53:44,708 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-10 00:53:44,748 [ scc.git] DEBUG Get sha1 of %s
2025-09-10 00:53:44,748 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:53:44,750 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-10 00:53:44,790 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-10 00:53:44,795 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f3750476e10> has no local changes
2025-09-10 00:53:44,795 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
- PR 76 will-moore 'Run cli deps'
Generated by OMERO-plugins-push#528 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/528/)'
2025-09-10 00:53:44,802 [ scc.git] DEBUG [detached HEAD 783e881] merge master -Dorg -Ssuccess-only
2025-09-10 00:53:44,803 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-10 00:53:44,803 [ scc.repo] DEBUG ## PRs found:
2025-09-10 00:53:45,166 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 None
2025-09-10 00:53:45,664 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/issues/14 HTTP/1.1" 200 None
2025-09-10 00:53:45,665 [ scc.repo] DEBUG # ... Include label: dependencies
2025-09-10 00:53:46,242 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None
2025-09-10 00:53:46,790 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-10 00:53:47,319 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-10 00:53:47,885 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None
2025-09-10 00:53:48,306 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/statuses/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?per_page=1 HTTP/1.1" 200 2
2025-09-10 00:53:48,306 [ scc.repo] DEBUG - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-10 00:53:48,307 [ scc.repo] DEBUG ## Branches found:
2025-09-10 00:53:48,307 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-09-10 00:53:48,307 [ scc.git] DEBUG Get sha1 of %s
2025-09-10 00:53:48,307 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:53:48,309 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-10 00:53:48,312 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-10 00:53:48,312 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-10 00:53:48,315 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-10 00:53:48,318 [ scc.git] DEBUG Already up to date.
2025-09-10 00:53:48,318 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2025-09-10 00:53:48,611 [ scc.git] DEBUG From https://github.com/ome/omero-upload
2025-09-10 00:53:48,611 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2025-09-10 00:53:48,616 [ scc.git] DEBUG ## Unique users: []
2025-09-10 00:53:48,616 [ scc.git] DEBUG Get sha1 of %s
2025-09-10 00:53:48,616 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:53:48,618 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2025-09-10 00:53:48,621 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:53:48,623 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2025-09-10 00:53:48,631 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-10 00:53:48,634 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-09-10 00:53:48,634 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-09-10 00:53:48,798 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-10 00:53:48,798 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-10 00:53:48,840 [ scc.git] DEBUG Get sha1 of %s
2025-09-10 00:53:48,840 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:53:48,842 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-10 00:53:48,882 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-10 00:53:48,885 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f3750427ad0> has no local changes
2025-09-10 00:53:48,885 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#528 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/528/)'
2025-09-10 00:53:48,892 [ scc.git] DEBUG [detached HEAD 35e3bf8] merge master -Dorg -Ssuccess-only
2025-09-10 00:53:48,892 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-10 00:53:48,892 [ scc.repo] DEBUG ## PRs found:
2025-09-10 00:53:49,422 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 None
2025-09-10 00:53:49,910 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/issues/22 HTTP/1.1" 200 None
2025-09-10 00:53:49,910 [ scc.repo] DEBUG # ... Include label: dependencies
2025-09-10 00:53:50,471 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None
2025-09-10 00:53:50,975 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-10 00:53:51,443 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-10 00:53:51,957 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None
2025-09-10 00:53:52,364 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/statuses/2ee819462af52bf2878fadf06d6ebdbafb8f1902?per_page=1 HTTP/1.1" 200 2
2025-09-10 00:53:52,364 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-10 00:53:52,364 [ scc.repo] DEBUG ## Branches found:
2025-09-10 00:53:52,364 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-09-10 00:53:52,364 [ scc.git] DEBUG Get sha1 of %s
2025-09-10 00:53:52,364 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:53:52,367 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-10 00:53:52,369 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-10 00:53:52,369 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-10 00:53:52,372 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-10 00:53:52,381 [ scc.git] DEBUG Updating deab817..160d894
2025-09-10 00:53:53,016 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2025-09-10 00:53:53,017 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2025-09-10 00:53:53,312 [ scc.git] DEBUG From https://github.com/ome/omero-virtual-microscope
2025-09-10 00:53:53,312 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2025-09-10 00:53:53,316 [ scc.git] DEBUG ## Unique users: []
2025-09-10 00:53:53,316 [ scc.git] DEBUG Get sha1 of %s
2025-09-10 00:53:53,316 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:53:53,318 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2025-09-10 00:53:53,321 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:53:53,323 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2025-09-10 00:53:53,332 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-10 00:53:53,335 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-09-10 00:53:53,335 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-09-10 00:53:53,564 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-10 00:53:53,564 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-10 00:53:53,605 [ scc.git] DEBUG Get sha1 of %s
2025-09-10 00:53:53,606 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:53:53,608 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-10 00:53:53,649 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-10 00:53:53,653 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f3750416110> has no local changes
2025-09-10 00:53:53,653 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#528 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/528/)'
2025-09-10 00:53:53,660 [ scc.git] DEBUG [detached HEAD a3b7731] merge master -Dorg -Ssuccess-only
2025-09-10 00:53:53,660 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-10 00:53:53,660 [ scc.git] INFO Overriding base-branch from master to main
2025-09-10 00:53:53,660 [ scc.repo] DEBUG ## PRs found:
2025-09-10 00:53:54,107 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2025-09-10 00:53:54,557 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None
2025-09-10 00:53:54,998 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21/comments HTTP/1.1" 200 None
2025-09-10 00:53:55,462 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/cf419dd60e4884ee15050271c97a6268e6e998b8 HTTP/1.1" 200 None
2025-09-10 00:53:55,972 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/cf419dd60e4884ee15050271c97a6268e6e998b8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-10 00:53:56,496 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/cf419dd60e4884ee15050271c97a6268e6e998b8/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-10 00:53:57,020 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/cf419dd60e4884ee15050271c97a6268e6e998b8 HTTP/1.1" 200 None
2025-09-10 00:53:57,427 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/cf419dd60e4884ee15050271c97a6268e6e998b8?per_page=1 HTTP/1.1" 200 2
2025-09-10 00:53:57,428 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import'
2025-09-10 00:53:57,888 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2025-09-10 00:53:58,373 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2025-09-10 00:53:58,811 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2025-09-10 00:53:59,319 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-09-10 00:53:59,788 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-10 00:54:00,304 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-09-10 00:54:00,717 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2025-09-10 00:54:00,717 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-09-10 00:54:00,718 [ scc.repo] DEBUG ## Branches found:
2025-09-10 00:54:00,718 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-09-10 00:54:00,718 [ scc.git] DEBUG Get sha1 of %s
2025-09-10 00:54:00,718 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:54:00,720 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2025-09-10 00:54:00,722 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-10 00:54:00,723 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2025-09-10 00:54:00,726 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2025-09-10 00:54:00,733 [ scc.git] DEBUG Updating 8f3c313..00e0207
2025-09-10 00:54:01,348 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/20 HTTP/1.1" 200 None
2025-09-10 00:54:01,349 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2025-09-10 00:54:01,793 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-09-10 00:54:01,793 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2025-09-10 00:54:01,797 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head'
2025-09-10 00:54:03,413 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-09-10 00:54:03,413 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD
2025-09-10 00:54:03,419 [ scc.git] DEBUG ## Unique users: []
2025-09-10 00:54:03,419 [ scc.git] DEBUG Get sha1 of %s
2025-09-10 00:54:03,419 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:54:03,421 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-09-10 00:54:03,425 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:54:03,427 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-09-10 00:54:03,575 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2025-09-10 00:54:03,575 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2025-09-10 00:54:03,575 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2025-09-10 00:54:03,575 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-09-10 00:54:03,575 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-09-10 00:54:03,578 [ scc.git] DEBUG Calling 'git reset --hard 00e02072dc29b04eba14c080ca8a0175a1499c15'
2025-09-10 00:54:03,583 [ scc.git] DEBUG HEAD is now at 00e0207 Merge pull request #20 from will-moore/zarr_python_v3
2025-09-10 00:54:03,716 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-10 00:54:03,717 [ scc.git] DEBUG Calling 'git merge-base 00e02072dc29b04eba14c080ca8a0175a1499c15 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-09-10 00:54:03,720 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..00e02072dc29b04eba14c080ca8a0175a1499c15'
2025-09-10 00:54:03,723 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#528](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/528/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/528/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2025-09-10 00:54:03,725 [ scc.config] DEBUG Found github.token
2025-09-10 00:54:03,725 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2025-09-10 00:54:03,725 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...cf419dd60e4884ee15050271c97a6268e6e998b8'
2025-09-10 00:54:03,728 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:54:03,730 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) cf419dd60e4884ee15050271c97a6268e6e998b8'
2025-09-10 00:54:03,748 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2025-09-10 00:54:03,749 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-10 00:54:03,753 [ scc.git] DEBUG README.rst | 3 +
2025-09-10 00:54:03,753 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++
2025-09-10 00:54:03,753 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 +
2025-09-10 00:54:03,753 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++-
2025-09-10 00:54:03,753 [ scc.git] DEBUG setup.py | 5 +-
2025-09-10 00:54:03,753 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-)
2025-09-10 00:54:03,753 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html
2025-09-10 00:54:04,104 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-10 00:54:04,105 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-10 00:54:04,146 [ scc.git] DEBUG Get sha1 of %s
2025-09-10 00:54:04,146 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:54:04,149 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-10 00:54:04,190 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-10 00:54:04,194 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f375044fe50> has no local changes
2025-09-10 00:54:04,194 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..00e0207
Previously merged:
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#528 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/528/)'
2025-09-10 00:54:04,201 [ scc.git] DEBUG [detached HEAD 0a1ae12] merge master -Dorg -Ssuccess-only
2025-09-10 00:54:04,201 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-10 00:54:04,201 [ scc.repo] DEBUG ## PRs found:
2025-09-10 00:54:04,579 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 None
2025-09-10 00:54:05,048 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/issues/25 HTTP/1.1" 200 None
2025-09-10 00:54:05,049 [ scc.repo] DEBUG # ... Include label: dependencies
2025-09-10 00:54:05,641 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None
2025-09-10 00:54:06,112 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-10 00:54:06,614 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-10 00:54:07,208 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None
2025-09-10 00:54:07,620 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/statuses/c73bedb717b9ecce0af666245d3486aa5a2dafe9?per_page=1 HTTP/1.1" 200 2
2025-09-10 00:54:07,621 [ scc.repo] DEBUG - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-10 00:54:07,621 [ scc.repo] DEBUG ## Branches found:
2025-09-10 00:54:07,621 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-09-10 00:54:07,621 [ scc.git] DEBUG Get sha1 of %s
2025-09-10 00:54:07,621 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:54:07,624 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-10 00:54:07,626 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-10 00:54:07,626 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-10 00:54:07,629 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-10 00:54:07,632 [ scc.git] DEBUG Already up to date.
2025-09-10 00:54:07,632 [ scc.git] DEBUG Calling 'git fetch origin pull/25/head'
2025-09-10 00:54:07,926 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-weberror
2025-09-10 00:54:07,926 [ scc.git] DEBUG * branch refs/pull/25/head -> FETCH_HEAD
2025-09-10 00:54:07,931 [ scc.git] DEBUG ## Unique users: []
2025-09-10 00:54:07,931 [ scc.git] DEBUG Get sha1 of %s
2025-09-10 00:54:07,931 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:54:07,934 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2025-09-10 00:54:07,937 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:54:07,939 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2025-09-10 00:54:07,947 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-10 00:54:07,950 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-09-10 00:54:07,951 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-09-10 00:54:08,099 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-10 00:54:08,100 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-10 00:54:08,143 [ scc.git] DEBUG Get sha1 of %s
2025-09-10 00:54:08,143 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:54:08,145 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-10 00:54:08,185 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-10 00:54:08,188 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f37504bbe10> has no local changes
2025-09-10 00:54:08,188 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#528 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/528/)'
2025-09-10 00:54:08,194 [ scc.git] DEBUG [detached HEAD a8da39c] merge master -Dorg -Ssuccess-only
2025-09-10 00:54:08,195 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-10 00:54:08,195 [ scc.repo] DEBUG ## PRs found:
2025-09-10 00:54:08,628 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 None
2025-09-10 00:54:09,125 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/issues/37 HTTP/1.1" 200 None
2025-09-10 00:54:09,126 [ scc.repo] DEBUG # ... Include label: dependencies
2025-09-10 00:54:09,693 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None
2025-09-10 00:54:10,188 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-10 00:54:11,240 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-10 00:54:11,837 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None
2025-09-10 00:54:12,250 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/statuses/8cf5f7e65ae8e945b134e41e77bc13a785aff478?per_page=1 HTTP/1.1" 200 2
2025-09-10 00:54:12,250 [ scc.repo] DEBUG - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-10 00:54:12,250 [ scc.repo] DEBUG ## Branches found:
2025-09-10 00:54:12,250 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-09-10 00:54:12,250 [ scc.git] DEBUG Get sha1 of %s
2025-09-10 00:54:12,250 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:54:12,253 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-10 00:54:12,255 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-10 00:54:12,255 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-10 00:54:12,258 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-10 00:54:12,262 [ scc.git] DEBUG Already up to date.
2025-09-10 00:54:12,262 [ scc.git] DEBUG Calling 'git fetch origin pull/37/head'
2025-09-10 00:54:12,562 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-webtest
2025-09-10 00:54:12,562 [ scc.git] DEBUG * branch refs/pull/37/head -> FETCH_HEAD
2025-09-10 00:54:12,567 [ scc.git] DEBUG ## Unique users: []
2025-09-10 00:54:12,567 [ scc.git] DEBUG Get sha1 of %s
2025-09-10 00:54:12,567 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:54:12,569 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2025-09-10 00:54:12,572 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:54:12,574 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 37 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2025-09-10 00:54:12,582 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-10 00:54:12,586 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-09-10 00:54:12,586 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-09-10 00:54:12,736 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-10 00:54:12,736 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-10 00:54:12,778 [ scc.git] DEBUG Get sha1 of %s
2025-09-10 00:54:12,778 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:54:12,780 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-10 00:54:12,821 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-10 00:54:12,825 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f375045e350> has no local changes
2025-09-10 00:54:12,825 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#528 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/528/)'
2025-09-10 00:54:12,832 [ scc.git] DEBUG [detached HEAD f9228ca] merge master -Dorg -Ssuccess-only
2025-09-10 00:54:12,832 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-10 00:54:12,832 [ scc.repo] DEBUG ## PRs found:
2025-09-10 00:54:13,244 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 None
2025-09-10 00:54:13,755 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100 HTTP/1.1" 200 None
2025-09-10 00:54:14,225 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100/comments HTTP/1.1" 200 None
2025-09-10 00:54:14,753 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-09-10 00:54:15,195 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-10 00:54:15,621 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-09-10 00:54:16,041 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/statuses/b4abacf0cb9b7aee150761d320bdbb80762cd6e7?per_page=1 HTTP/1.1" 200 2
2025-09-10 00:54:16,041 [ scc.repo] DEBUG - PR 100 dominikl 'Run tests properly'
2025-09-10 00:54:16,041 [ scc.repo] DEBUG ## Branches found:
2025-09-10 00:54:16,041 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-09-10 00:54:16,041 [ scc.git] DEBUG Get sha1 of %s
2025-09-10 00:54:16,042 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:54:16,044 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-10 00:54:16,047 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-10 00:54:16,047 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-10 00:54:16,050 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-10 00:54:16,053 [ scc.git] DEBUG Already up to date.
2025-09-10 00:54:16,053 [ scc.git] DEBUG Calling 'git fetch origin pull/100/head'
2025-09-10 00:54:16,510 [ scc.git] DEBUG From https://github.com/ome/rOMERO-gateway
2025-09-10 00:54:16,510 [ scc.git] DEBUG * branch refs/pull/100/head -> FETCH_HEAD
2025-09-10 00:54:16,514 [ scc.git] DEBUG ## Unique users: []
2025-09-10 00:54:16,514 [ scc.git] DEBUG Get sha1 of %s
2025-09-10 00:54:16,514 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:54:16,517 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-09-10 00:54:16,520 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:54:16,522 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 100 (Run tests properly) b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-09-10 00:54:16,559 [ scc.git] DEBUG Auto-merging Dockerfile
2025-09-10 00:54:16,559 [ scc.git] DEBUG CONFLICT (content): Merge conflict in Dockerfile
2025-09-10 00:54:16,560 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-09-10 00:54:16,560 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-09-10 00:54:16,563 [ scc.git] DEBUG Calling 'git reset --hard 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-09-10 00:54:16,567 [ scc.git] DEBUG HEAD is now at 7b5d64d Merge pull request #106 from dominikl/add_examples_2
2025-09-10 00:54:16,706 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-10 00:54:16,706 [ scc.git] DEBUG Calling 'git merge-base 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-09-10 00:54:16,709 [ scc.git] DEBUG Calling 'git diff --name-only 8b424d2d21f70d07729c4da38a9241b9a9f483be..7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-09-10 00:54:16,712 [ scc.git] INFO - PR 100 dominikl 'Run tests properly'
Conflicting PR. Removed from build [OMERO-plugins-push#528](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/528/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/528/consoleText) for more details.
Possible conflicts:
- Upstream changes
- Dockerfile
--conflicts
2025-09-10 00:54:16,714 [ scc.config] DEBUG Found github.token
2025-09-10 00:54:16,714 [ scc.git] DEBUG Not adding comment to issue #100, already --conflicts.
2025-09-10 00:54:16,714 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-10 00:54:16,755 [ scc.git] DEBUG Get sha1 of %s
2025-09-10 00:54:16,755 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:54:16,757 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-10 00:54:16,796 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-10 00:54:16,800 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f37504c4f50> has no local changes
2025-09-10 00:54:16,800 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Generated by OMERO-plugins-push#528 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/528/)'
2025-09-10 00:54:16,807 [ scc.git] DEBUG [detached HEAD c360aa6] merge master -Dorg -Ssuccess-only
2025-09-10 00:54:16,807 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-10 00:54:16,807 [ scc.git] INFO Overriding base-branch from master to develop
2025-09-10 00:54:16,807 [ scc.repo] DEBUG ## PRs found:
2025-09-10 00:54:17,273 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2025-09-10 00:54:17,740 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223 HTTP/1.1" 200 None
2025-09-10 00:54:18,196 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223/comments HTTP/1.1" 200 None
2025-09-10 00:54:18,689 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-09-10 00:54:19,178 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-10 00:54:19,643 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-10 00:54:20,102 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-09-10 00:54:20,513 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/d8b2bbd6f5066de883a41ba5338662d60472b0d8?per_page=1 HTTP/1.1" 200 2
2025-09-10 00:54:20,513 [ scc.repo] DEBUG - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-09-10 00:54:20,968 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202 HTTP/1.1" 200 None
2025-09-10 00:54:21,411 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202/comments HTTP/1.1" 200 None
2025-09-10 00:54:21,903 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-09-10 00:54:22,357 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-10 00:54:22,785 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-09-10 00:54:23,209 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/1fd6030669613cdb8879cfe6395db8c820fdcf19?per_page=1 HTTP/1.1" 200 2
2025-09-10 00:54:23,209 [ scc.repo] DEBUG - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-09-10 00:54:23,700 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None
2025-09-10 00:54:24,199 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None
2025-09-10 00:54:24,676 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103 HTTP/1.1" 200 None
2025-09-10 00:54:25,123 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103/comments HTTP/1.1" 200 None
2025-09-10 00:54:25,124 [ scc.repo] DEBUG ## Branches found:
2025-09-10 00:54:25,124 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-09-10 00:54:25,124 [ scc.git] DEBUG Get sha1 of %s
2025-09-10 00:54:25,124 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:54:25,127 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2025-09-10 00:54:25,129 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-10 00:54:25,129 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2025-09-10 00:54:25,132 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2025-09-10 00:54:25,143 [ scc.git] DEBUG Updating 4b4c755..03b9116
2025-09-10 00:54:25,763 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/228 HTTP/1.1" 200 None
2025-09-10 00:54:26,475 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2025-09-10 00:54:27,138 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2025-09-10 00:54:27,139 [ scc.git] DEBUG Calling 'git fetch origin pull/202/head'
2025-09-10 00:54:27,590 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-09-10 00:54:27,590 [ scc.git] DEBUG * branch refs/pull/202/head -> FETCH_HEAD
2025-09-10 00:54:27,595 [ scc.git] DEBUG Calling 'git fetch origin pull/223/head'
2025-09-10 00:54:28,110 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-09-10 00:54:28,110 [ scc.git] DEBUG * branch refs/pull/223/head -> FETCH_HEAD
2025-09-10 00:54:28,114 [ scc.git] DEBUG ## Unique users: []
2025-09-10 00:54:28,114 [ scc.git] DEBUG Get sha1 of %s
2025-09-10 00:54:28,114 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:54:28,117 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-09-10 00:54:28,122 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:54:28,125 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 202 (Add Plate support to KeyVal_to_csv.py) 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-09-10 00:54:28,162 [ scc.git] DEBUG CONFLICT (modify/delete): omero/annotation_scripts/KeyVal_to_csv.py deleted in HEAD and modified in 1fd6030669613cdb8879cfe6395db8c820fdcf19. Version 1fd6030669613cdb8879cfe6395db8c820fdcf19 of omero/annotation_scripts/KeyVal_to_csv.py left in tree.
2025-09-10 00:54:28,162 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-09-10 00:54:28,163 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-09-10 00:54:28,165 [ scc.git] DEBUG Calling 'git reset --hard 03b9116196e1a799dd18a666559613d912be01a5'
2025-09-10 00:54:28,169 [ scc.git] DEBUG HEAD is now at 03b9116 Merge pull request #228 from ome/dependabot/github_actions/dot-github/workflows/pypa/gh-action-pypi-publish-1.13.0
2025-09-10 00:54:28,327 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-10 00:54:28,328 [ scc.git] DEBUG Calling 'git merge-base 03b9116196e1a799dd18a666559613d912be01a5 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-09-10 00:54:28,333 [ scc.git] DEBUG Calling 'git diff --name-only a90f59802f6752ad74badec5c0c1d6b0c9c43b15..03b9116196e1a799dd18a666559613d912be01a5'
2025-09-10 00:54:28,338 [ scc.git] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Conflicting PR. Removed from build [OMERO-plugins-push#528](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/528/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/528/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero/annotation_scripts/KeyVal_to_csv.py
--conflicts
2025-09-10 00:54:28,340 [ scc.config] DEBUG Found github.token
2025-09-10 00:54:28,340 [ scc.git] DEBUG Not adding comment to issue #202, already --conflicts.
2025-09-10 00:54:28,340 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-09-10 00:54:28,345 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:54:28,348 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 223 (don't attempt ROI stats on big images) d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-09-10 00:54:28,358 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-10 00:54:28,361 [ scc.git] DEBUG omero/export_scripts/Batch_ROI_Export.py | 9 ++++++++-
2025-09-10 00:54:28,362 [ scc.git] DEBUG 1 file changed, 8 insertions(+), 1 deletion(-)
2025-09-10 00:54:28,719 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-10 00:54:28,720 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-10 00:54:28,760 [ scc.git] DEBUG Get sha1 of %s
2025-09-10 00:54:28,760 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-10 00:54:28,762 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-10 00:54:28,801 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-10 00:54:28,805 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f3750dc9b90> has no local changes
2025-09-10 00:54:28,805 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..03b9116
Previously merged:
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#528 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/528/)'
2025-09-10 00:54:28,812 [ scc.git] DEBUG [detached HEAD a1f2ce5] merge master -Dorg -Ssuccess-only
2025-09-10 00:54:28,812 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-10 00:54:28,812 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-10 00:54:28,891 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2025-09-10 00:54:29,122 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-10 00:54:29,127 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2025-09-10 00:54:29,129 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2025-09-10 00:54:29,519 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-10 00:54:29,524 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2025-09-10 00:54:29,526 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2025-09-10 00:54:29,926 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-10 00:54:29,932 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2025-09-10 00:54:29,934 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2025-09-10 00:54:30,325 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-10 00:54:30,333 [ scc.config] DEBUG Found submodule.omero-figure.url
2025-09-10 00:54:30,743 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-10 00:54:30,749 [ scc.config] DEBUG Found submodule.omero-figure.branch
2025-09-10 00:54:30,751 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2025-09-10 00:54:31,139 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-10 00:54:31,144 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2025-09-10 00:54:31,146 [ scc.config] DEBUG Found submodule.omero-gallery.url
2025-09-10 00:54:31,547 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-10 00:54:31,552 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2025-09-10 00:54:31,554 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2025-09-10 00:54:31,968 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-10 00:54:31,973 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2025-09-10 00:54:31,975 [ scc.config] DEBUG Found submodule.omero-mapr.url
2025-09-10 00:54:32,360 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-10 00:54:32,365 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2025-09-10 00:54:32,367 [ scc.config] DEBUG Found submodule.omero-metadata.url
2025-09-10 00:54:32,759 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-10 00:54:32,764 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2025-09-10 00:54:32,766 [ scc.config] DEBUG Found submodule.omero-parade.url
2025-09-10 00:54:33,142 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-10 00:54:33,147 [ scc.config] DEBUG Found submodule.omero-parade.branch
2025-09-10 00:54:33,149 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2025-09-10 00:54:33,535 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-10 00:54:33,540 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2025-09-10 00:54:33,543 [ scc.config] DEBUG Found submodule.omero-rois.url
2025-09-10 00:54:33,930 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-10 00:54:33,937 [ scc.config] DEBUG Found submodule.omero-signup.url
2025-09-10 00:54:34,323 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-10 00:54:34,330 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2025-09-10 00:54:34,712 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-10 00:54:34,717 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2025-09-10 00:54:34,719 [ scc.config] DEBUG Found submodule.omero-upload.url
2025-09-10 00:54:35,117 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-10 00:54:35,124 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2025-09-10 00:54:35,543 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-10 00:54:35,550 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2025-09-10 00:54:35,954 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-10 00:54:35,959 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2025-09-10 00:54:35,961 [ scc.config] DEBUG Found submodule.omero-weberror.url
2025-09-10 00:54:36,353 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-10 00:54:36,358 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2025-09-10 00:54:36,360 [ scc.config] DEBUG Found submodule.omero-webtest.url
2025-09-10 00:54:36,759 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-10 00:54:36,764 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2025-09-10 00:54:36,766 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2025-09-10 00:54:37,151 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-10 00:54:37,156 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2025-09-10 00:54:37,158 [ scc.config] DEBUG Found submodule.scripts.url
2025-09-10 00:54:37,561 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-10 00:54:37,566 [ scc.config] DEBUG Found submodule.scripts.branch
2025-09-10 00:54:37,566 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-10 00:54:37,664 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f3750d425d0> has local changes
2025-09-10 00:54:37,664 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Merged PRs:
- PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-cli-render
Excluded PRs:
- PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Already up to date.
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
- PR 69 dominikl 'Fix help text for impo/export commands'
- PR 71 dominikl 'Escape slash character in image names'
- PR 73 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 174 will-moore 'Skip wells' (stage: draft)
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (exclude comment)
- PR 170 will-moore 'Use ome zarr models py' (stage: draft)
- PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
- PR 167 dominikl 'Add extinfo command' (stage: draft)
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..f7eea7c
Previously merged:
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
- PR 180 will-moore 'Register command'
Repository: ome/omero-figure
Excluded PRs:
- PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
- PR 619 will-moore 'OME-Zarr support' (stage: draft)
- PR 543 will-moore 'Plate well labels' (exclude comment)
Updating 9cc36cde..d2c6f5bc
Previously merged:
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 600 Rdornier 'Label on rois'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 612 will-moore 'Script version'
Conflicting PRs (not included):
- PR 616 Rdornier 'Fix labels around border'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 637 Rdornier 'Fix scalebar position'
- PR 642 dependabot[bot] 'Bump vite from 6.2.6 to 6.3.6'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
- PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..bb94cf8
Previously merged:
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
Conflicting PRs (not included):
- PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
- PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
- PR 76 will-moore 'Run cli deps'
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..00e0207
Previously merged:
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..03b9116
Previously merged:
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#528 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/528/)'
2025-09-10 00:54:37,678 [ scc.git] DEBUG [detached HEAD 3086af3] merge master -Dorg -Ssuccess-only
2025-09-10 00:54:37,678 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-)
2025-09-10 00:54:37,678 [ scc.merge] INFO Repository: ome/omero-plugins
2025-09-10 00:54:37,678 [ scc.merge] INFO Already up to date.
2025-09-10 00:54:37,678 [ scc.merge] INFO
2025-09-10 00:54:37,678 [ scc.merge] INFO Merged PRs:
2025-09-10 00:54:37,678 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2025-09-10 00:54:37,678 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2025-09-10 00:54:37,679 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2025-09-10 00:54:37,679 [ scc.merge] INFO
2025-09-10 00:54:37,679 [ scc.merge] INFO Repository: ome/minimal-omero-client
2025-09-10 00:54:37,679 [ scc.merge] INFO Already up to date.
2025-09-10 00:54:37,679 [ scc.merge] INFO
2025-09-10 00:54:37,679 [ scc.merge] INFO
2025-09-10 00:54:37,679 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2025-09-10 00:54:37,679 [ scc.merge] INFO Excluded PRs:
2025-09-10 00:54:37,679 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2025-09-10 00:54:37,679 [ scc.merge] INFO Already up to date.
2025-09-10 00:54:37,679 [ scc.merge] INFO
2025-09-10 00:54:37,679 [ scc.merge] INFO Merged PRs:
2025-09-10 00:54:37,679 [ scc.merge] INFO - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-10 00:54:37,679 [ scc.merge] INFO
2025-09-10 00:54:37,679 [ scc.merge] INFO Repository: ome/omero-cli-render
2025-09-10 00:54:37,679 [ scc.merge] INFO Excluded PRs:
2025-09-10 00:54:37,679 [ scc.merge] INFO - PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
2025-09-10 00:54:37,679 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2025-09-10 00:54:37,679 [ scc.merge] INFO Already up to date.
2025-09-10 00:54:37,679 [ scc.merge] INFO
2025-09-10 00:54:37,679 [ scc.merge] INFO Merged PRs:
2025-09-10 00:54:37,679 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2025-09-10 00:54:37,679 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2025-09-10 00:54:37,679 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2025-09-10 00:54:37,679 [ scc.merge] INFO - PR 73 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-10 00:54:37,679 [ scc.merge] INFO
2025-09-10 00:54:37,679 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2025-09-10 00:54:37,679 [ scc.merge] INFO Excluded PRs:
2025-09-10 00:54:37,679 [ scc.merge] INFO - PR 174 will-moore 'Skip wells' (stage: draft)
2025-09-10 00:54:37,679 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (exclude comment)
2025-09-10 00:54:37,679 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft)
2025-09-10 00:54:37,679 [ scc.merge] INFO - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
2025-09-10 00:54:37,679 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft)
2025-09-10 00:54:37,679 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2025-09-10 00:54:37,679 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-09-10 00:54:37,679 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2025-09-10 00:54:37,679 [ scc.merge] INFO Updating 11d3587..f7eea7c
2025-09-10 00:54:37,679 [ scc.merge] INFO Previously merged:
2025-09-10 00:54:37,679 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2025-09-10 00:54:37,679 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2025-09-10 00:54:37,680 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2025-09-10 00:54:37,680 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2025-09-10 00:54:37,680 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2025-09-10 00:54:37,680 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2025-09-10 00:54:37,680 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-10 00:54:37,680 [ scc.merge] INFO
2025-09-10 00:54:37,680 [ scc.merge] INFO Merged PRs:
2025-09-10 00:54:37,680 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2025-09-10 00:54:37,680 [ scc.merge] INFO - PR 180 will-moore 'Register command'
2025-09-10 00:54:37,680 [ scc.merge] INFO
2025-09-10 00:54:37,680 [ scc.merge] INFO Repository: ome/omero-figure
2025-09-10 00:54:37,680 [ scc.merge] INFO Excluded PRs:
2025-09-10 00:54:37,680 [ scc.merge] INFO - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
2025-09-10 00:54:37,680 [ scc.merge] INFO - PR 619 will-moore 'OME-Zarr support' (stage: draft)
2025-09-10 00:54:37,680 [ scc.merge] INFO - PR 543 will-moore 'Plate well labels' (exclude comment)
2025-09-10 00:54:37,680 [ scc.merge] INFO Updating 9cc36cde..d2c6f5bc
2025-09-10 00:54:37,680 [ scc.merge] INFO Previously merged:
2025-09-10 00:54:37,680 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2025-09-10 00:54:37,680 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2025-09-10 00:54:37,680 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2025-09-10 00:54:37,680 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2025-09-10 00:54:37,680 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-10 00:54:37,680 [ scc.merge] INFO
2025-09-10 00:54:37,680 [ scc.merge] INFO Merged PRs:
2025-09-10 00:54:37,680 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2025-09-10 00:54:37,680 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2025-09-10 00:54:37,680 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2025-09-10 00:54:37,680 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2025-09-10 00:54:37,680 [ scc.merge] INFO
2025-09-10 00:54:37,680 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-10 00:54:37,680 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2025-09-10 00:54:37,680 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2025-09-10 00:54:37,680 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2025-09-10 00:54:37,680 [ scc.merge] INFO - PR 642 dependabot[bot] 'Bump vite from 6.2.6 to 6.3.6'
2025-09-10 00:54:37,680 [ scc.merge] INFO
2025-09-10 00:54:37,680 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2025-09-10 00:54:37,680 [ scc.merge] INFO Already up to date.
2025-09-10 00:54:37,680 [ scc.merge] INFO
2025-09-10 00:54:37,680 [ scc.merge] INFO Merged PRs:
2025-09-10 00:54:37,680 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2025-09-10 00:54:37,680 [ scc.merge] INFO - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-10 00:54:37,680 [ scc.merge] INFO
2025-09-10 00:54:37,681 [ scc.merge] INFO Repository: ome/omero-gallery
2025-09-10 00:54:37,681 [ scc.merge] INFO Already up to date.
2025-09-10 00:54:37,681 [ scc.merge] INFO
2025-09-10 00:54:37,681 [ scc.merge] INFO Merged PRs:
2025-09-10 00:54:37,681 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2025-09-10 00:54:37,681 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2025-09-10 00:54:37,681 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2025-09-10 00:54:37,681 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2025-09-10 00:54:37,681 [ scc.merge] INFO
2025-09-10 00:54:37,681 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-10 00:54:37,681 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2025-09-10 00:54:37,681 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2025-09-10 00:54:37,681 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2025-09-10 00:54:37,681 [ scc.merge] INFO
2025-09-10 00:54:37,681 [ scc.merge] INFO Repository: ome/omero-iviewer
2025-09-10 00:54:37,681 [ scc.merge] INFO Excluded PRs:
2025-09-10 00:54:37,681 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
2025-09-10 00:54:37,681 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
2025-09-10 00:54:37,681 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2025-09-10 00:54:37,681 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2025-09-10 00:54:37,681 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure)
2025-09-10 00:54:37,681 [ scc.merge] INFO Updating 7a798ce..bb94cf8
2025-09-10 00:54:37,681 [ scc.merge] INFO Previously merged:
2025-09-10 00:54:37,681 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-10 00:54:37,681 [ scc.merge] INFO
2025-09-10 00:54:37,681 [ scc.merge] INFO Merged PRs:
2025-09-10 00:54:37,681 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix'
2025-09-10 00:54:37,681 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2025-09-10 00:54:37,681 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2025-09-10 00:54:37,681 [ scc.merge] INFO - PR 499 dependabot[bot] 'Bump nanoid and mocha'
2025-09-10 00:54:37,681 [ scc.merge] INFO
2025-09-10 00:54:37,681 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-10 00:54:37,681 [ scc.merge] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
2025-09-10 00:54:37,681 [ scc.merge] INFO
2025-09-10 00:54:37,681 [ scc.merge] INFO Repository: ome/omero-mapr
2025-09-10 00:54:37,681 [ scc.merge] INFO Excluded PRs:
2025-09-10 00:54:37,681 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2025-09-10 00:54:37,681 [ scc.merge] INFO Already up to date.
2025-09-10 00:54:37,681 [ scc.merge] INFO
2025-09-10 00:54:37,681 [ scc.merge] INFO Merged PRs:
2025-09-10 00:54:37,681 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient'
2025-09-10 00:54:37,681 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-10 00:54:37,682 [ scc.merge] INFO
2025-09-10 00:54:37,682 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-10 00:54:37,682 [ scc.merge] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-10 00:54:37,682 [ scc.merge] INFO
2025-09-10 00:54:37,682 [ scc.merge] INFO Repository: ome/omero-metadata
2025-09-10 00:54:37,682 [ scc.merge] INFO Updating 3cd120c..55060a2
2025-09-10 00:54:37,682 [ scc.merge] INFO Previously merged:
2025-09-10 00:54:37,682 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-10 00:54:37,682 [ scc.merge] INFO
2025-09-10 00:54:37,682 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-10 00:54:37,682 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-09-10 00:54:37,682 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-09-10 00:54:37,682 [ scc.merge] INFO
2025-09-10 00:54:37,682 [ scc.merge] INFO Repository: ome/omero-parade
2025-09-10 00:54:37,682 [ scc.merge] INFO Excluded PRs:
2025-09-10 00:54:37,682 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2025-09-10 00:54:37,682 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2025-09-10 00:54:37,682 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2025-09-10 00:54:37,682 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2025-09-10 00:54:37,682 [ scc.merge] INFO Already up to date.
2025-09-10 00:54:37,682 [ scc.merge] INFO
2025-09-10 00:54:37,682 [ scc.merge] INFO Merged PRs:
2025-09-10 00:54:37,682 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-09-10 00:54:37,682 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-09-10 00:54:37,682 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-10 00:54:37,682 [ scc.merge] INFO
2025-09-10 00:54:37,682 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2025-09-10 00:54:37,682 [ scc.merge] INFO Already up to date.
2025-09-10 00:54:37,682 [ scc.merge] INFO
2025-09-10 00:54:37,682 [ scc.merge] INFO Merged PRs:
2025-09-10 00:54:37,682 [ scc.merge] INFO - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-10 00:54:37,682 [ scc.merge] INFO
2025-09-10 00:54:37,682 [ scc.merge] INFO Repository: ome/omero-rois
2025-09-10 00:54:37,682 [ scc.merge] INFO Excluded PRs:
2025-09-10 00:54:37,682 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-09-10 00:54:37,682 [ scc.merge] INFO Already up to date.
2025-09-10 00:54:37,682 [ scc.merge] INFO
2025-09-10 00:54:37,682 [ scc.merge] INFO Merged PRs:
2025-09-10 00:54:37,682 [ scc.merge] INFO - PR 33 jo-mueller 'Add roi to array functions'
2025-09-10 00:54:37,682 [ scc.merge] INFO - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-10 00:54:37,682 [ scc.merge] INFO
2025-09-10 00:54:37,682 [ scc.merge] INFO Repository: ome/omero-signup
2025-09-10 00:54:37,683 [ scc.merge] INFO Already up to date.
2025-09-10 00:54:37,683 [ scc.merge] INFO
2025-09-10 00:54:37,683 [ scc.merge] INFO Merged PRs:
2025-09-10 00:54:37,683 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-10 00:54:37,683 [ scc.merge] INFO
2025-09-10 00:54:37,683 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-10 00:54:37,683 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2025-09-10 00:54:37,683 [ scc.merge] INFO
2025-09-10 00:54:37,683 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2025-09-10 00:54:37,683 [ scc.merge] INFO Excluded PRs:
2025-09-10 00:54:37,683 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2025-09-10 00:54:37,683 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
2025-09-10 00:54:37,683 [ scc.merge] INFO - PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
2025-09-10 00:54:37,683 [ scc.merge] INFO Already up to date.
2025-09-10 00:54:37,683 [ scc.merge] INFO
2025-09-10 00:54:37,683 [ scc.merge] INFO Merged PRs:
2025-09-10 00:54:37,683 [ scc.merge] INFO - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-09-10 00:54:37,683 [ scc.merge] INFO - PR 76 will-moore 'Run cli deps'
2025-09-10 00:54:37,683 [ scc.merge] INFO
2025-09-10 00:54:37,683 [ scc.merge] INFO Repository: ome/omero-upload
2025-09-10 00:54:37,683 [ scc.merge] INFO Already up to date.
2025-09-10 00:54:37,683 [ scc.merge] INFO
2025-09-10 00:54:37,683 [ scc.merge] INFO Merged PRs:
2025-09-10 00:54:37,683 [ scc.merge] INFO - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-10 00:54:37,683 [ scc.merge] INFO
2025-09-10 00:54:37,683 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2025-09-10 00:54:37,683 [ scc.merge] INFO Updating deab817..160d894
2025-09-10 00:54:37,683 [ scc.merge] INFO Previously merged:
2025-09-10 00:54:37,683 [ scc.merge] INFO - PR 20 jburel 'Build'
2025-09-10 00:54:37,683 [ scc.merge] INFO
2025-09-10 00:54:37,683 [ scc.merge] INFO Merged PRs:
2025-09-10 00:54:37,683 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-10 00:54:37,683 [ scc.merge] INFO
2025-09-10 00:54:37,683 [ scc.merge] INFO Repository: ome/omero-web-zarr
2025-09-10 00:54:37,683 [ scc.merge] INFO Excluded PRs:
2025-09-10 00:54:37,683 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2025-09-10 00:54:37,683 [ scc.merge] INFO Updating 8f3c313..00e0207
2025-09-10 00:54:37,683 [ scc.merge] INFO Previously merged:
2025-09-10 00:54:37,683 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2025-09-10 00:54:37,683 [ scc.merge] INFO
2025-09-10 00:54:37,683 [ scc.merge] INFO Merged PRs:
2025-09-10 00:54:37,683 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import'
2025-09-10 00:54:37,684 [ scc.merge] INFO
2025-09-10 00:54:37,684 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-10 00:54:37,684 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-09-10 00:54:37,684 [ scc.merge] INFO
2025-09-10 00:54:37,684 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2025-09-10 00:54:37,684 [ scc.merge] INFO Already up to date.
2025-09-10 00:54:37,684 [ scc.merge] INFO
2025-09-10 00:54:37,684 [ scc.merge] INFO Merged PRs:
2025-09-10 00:54:37,684 [ scc.merge] INFO - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-10 00:54:37,684 [ scc.merge] INFO
2025-09-10 00:54:37,684 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2025-09-10 00:54:37,684 [ scc.merge] INFO Already up to date.
2025-09-10 00:54:37,684 [ scc.merge] INFO
2025-09-10 00:54:37,684 [ scc.merge] INFO Merged PRs:
2025-09-10 00:54:37,684 [ scc.merge] INFO - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-10 00:54:37,684 [ scc.merge] INFO
2025-09-10 00:54:37,684 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2025-09-10 00:54:37,684 [ scc.merge] INFO Already up to date.
2025-09-10 00:54:37,684 [ scc.merge] INFO
2025-09-10 00:54:37,684 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-10 00:54:37,684 [ scc.merge] INFO - PR 100 dominikl 'Run tests properly'
2025-09-10 00:54:37,684 [ scc.merge] INFO
2025-09-10 00:54:37,684 [ scc.merge] INFO Repository: ome/scripts
2025-09-10 00:54:37,684 [ scc.merge] INFO Excluded PRs:
2025-09-10 00:54:37,684 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
2025-09-10 00:54:37,684 [ scc.merge] INFO - PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
2025-09-10 00:54:37,684 [ scc.merge] INFO Updating 4b4c755..03b9116
2025-09-10 00:54:37,684 [ scc.merge] INFO Previously merged:
2025-09-10 00:54:37,684 [ scc.merge] INFO - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
2025-09-10 00:54:37,684 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2025-09-10 00:54:37,684 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2025-09-10 00:54:37,684 [ scc.merge] INFO
2025-09-10 00:54:37,684 [ scc.merge] INFO Merged PRs:
2025-09-10 00:54:37,684 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-09-10 00:54:37,684 [ scc.merge] INFO
2025-09-10 00:54:37,684 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-10 00:54:37,684 [ scc.merge] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-09-10 00:54:37,684 [ scc.merge] INFO
2025-09-10 00:54:37,684 [ scc.merge] DEBUG Cleaning remote branches created for merging
2025-09-10 00:54:37,685 [ scc.git] DEBUG Calling 'git remote'
2025-09-10 00:54:37,687 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2025-09-10 00:54:37,687 [ scc.git] DEBUG Calling 'git remote'
2025-09-10 00:54:37,689 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-10 00:54:37,689 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2025-09-10 00:54:37,689 [ scc.git] DEBUG Calling 'git remote'
2025-09-10 00:54:37,691 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-10 00:54:37,692 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2025-09-10 00:54:37,692 [ scc.git] DEBUG Calling 'git remote'
2025-09-10 00:54:37,694 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-10 00:54:37,694 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2025-09-10 00:54:37,694 [ scc.git] DEBUG Calling 'git remote'
2025-09-10 00:54:37,697 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-10 00:54:37,697 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2025-09-10 00:54:37,697 [ scc.git] DEBUG Calling 'git remote'
2025-09-10 00:54:37,699 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-10 00:54:37,699 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2025-09-10 00:54:37,699 [ scc.git] DEBUG Calling 'git remote'
2025-09-10 00:54:37,701 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-10 00:54:37,701 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2025-09-10 00:54:37,701 [ scc.git] DEBUG Calling 'git remote'
2025-09-10 00:54:37,704 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-10 00:54:37,704 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2025-09-10 00:54:37,704 [ scc.git] DEBUG Calling 'git remote'
2025-09-10 00:54:37,706 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-10 00:54:37,706 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2025-09-10 00:54:37,706 [ scc.git] DEBUG Calling 'git remote'
2025-09-10 00:54:37,708 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-10 00:54:37,708 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-09-10 00:54:37,708 [ scc.git] DEBUG Calling 'git remote'
2025-09-10 00:54:37,711 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-10 00:54:37,711 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-09-10 00:54:37,711 [ scc.git] DEBUG Calling 'git remote'
2025-09-10 00:54:37,713 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-10 00:54:37,713 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-09-10 00:54:37,713 [ scc.git] DEBUG Calling 'git remote'
2025-09-10 00:54:37,715 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-10 00:54:37,715 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-09-10 00:54:37,715 [ scc.git] DEBUG Calling 'git remote'
2025-09-10 00:54:37,717 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-10 00:54:37,717 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-09-10 00:54:37,717 [ scc.git] DEBUG Calling 'git remote'
2025-09-10 00:54:37,720 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-10 00:54:37,720 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-09-10 00:54:37,720 [ scc.git] DEBUG Calling 'git remote'
2025-09-10 00:54:37,722 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-10 00:54:37,722 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-09-10 00:54:37,722 [ scc.git] DEBUG Calling 'git remote'
2025-09-10 00:54:37,724 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-10 00:54:37,724 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-09-10 00:54:37,724 [ scc.git] DEBUG Calling 'git remote'
2025-09-10 00:54:37,727 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-10 00:54:37,727 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-09-10 00:54:37,727 [ scc.git] DEBUG Calling 'git remote'
2025-09-10 00:54:37,729 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-10 00:54:37,729 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-09-10 00:54:37,729 [ scc.git] DEBUG Calling 'git remote'
2025-09-10 00:54:37,731 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-10 00:54:37,731 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-09-10 00:54:37,731 [ scc.git] DEBUG Calling 'git remote'
2025-09-10 00:54:37,733 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-10 00:54:37,733 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-09-10 00:54:37,733 [ scc.git] DEBUG Calling 'git remote'
2025-09-10 00:54:37,736 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-10 00:54:37,736 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-09-10 00:54:37,736 [ scc.git] DEBUG Calling 'git remote'
2025-09-10 00:54:37,738 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.10.4-SNAPSHOT
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Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD 536a9ba] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798ce
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD a52f4e1] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2025-09-10 00:55:24,837 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2025-09-10 00:55:34,010 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2025-09-10 00:55:36,401 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-09-10 00:55:40,990 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-09-10 00:56:21,003 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
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