![[Jenkins]](/jenkins/static/9161e9ff/images/svgs/logo.svg){kind=logo}
Started by upstream project "Trigger" build number 621 originally caused by: Started by timer [Pipeline] Start of Pipeline [Pipeline] node Running on testintegration in /home/omero/workspace/OMERO-plugins-push [Pipeline] { [Pipeline] library Loading library recursiveMerge@master Attempting to resolve master from remote references... > git --version # timeout=10 > git --version # 'git version 2.39.2' > git ls-remote -- https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Found match: refs/heads/master revision 654fab96d71411fab33e55b79057bcbf94eef8a2 The recommended git tool is: NONE No credentials specified > git rev-parse --resolve-git-dir /var/jenkins_home/jobs/OMERO-plugins-push/workspace@libs/3527f795de077758b82663f7b48798100750860c75e4099522d51863b08dc748/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Fetching without tags Fetching upstream changes from https://github.com/ome/jenkins-library-recursivemerge.git > git --version # timeout=10 > git --version # 'git version 2.39.2' > git fetch --no-tags --force --progress -- https://github.com/ome/jenkins-library-recursivemerge.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Checking out Revision 654fab96d71411fab33e55b79057bcbf94eef8a2 (master) > git config core.sparsecheckout # timeout=10 > git checkout -f 654fab96d71411fab33e55b79057bcbf94eef8a2 # timeout=10 Commit message: "Merge pull request #18 from jburel/python_311" > git rev-list --no-walk 654fab96d71411fab33e55b79057bcbf94eef8a2 # timeout=10 [Pipeline] checkout The recommended git tool is: NONE No credentials specified Fetching changes from the remote Git repository > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-plugins-push/.git # timeout=10 > git config remote.origin.url https://github.com/ome/omero-plugins.git # timeout=10 Fetching upstream changes from https://github.com/ome/omero-plugins.git > git --version # timeout=10 > git --version # 'git version 2.43.5' > git fetch --tags --force --progress -- https://github.com/ome/omero-plugins.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Checking out Revision 84258d5f2eea775a37267d49c87b3698bcfa5d38 (refs/remotes/origin/master) > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 84258d5f2eea775a37267d49c87b3698bcfa5d38 # timeout=10 Commit message: "Merge pull request #426 from ome/dependabot/submodules/omero-prometheus-tools-eb47378" > git rev-list --no-walk 84258d5f2eea775a37267d49c87b3698bcfa5d38 # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -fdx # timeout=10 > git submodule foreach --recursive git reset --hard # timeout=10 > git submodule foreach --recursive git clean -fdx # timeout=10 > git remote # timeout=10 > git submodule init # timeout=10 > git submodule sync # timeout=10 > git config --get remote.origin.url # timeout=10 > git submodule init # timeout=10 > git config -f .gitmodules --get-regexp ^submodule\.(.+)\.url # timeout=10 > git config --get submodule.omero-figure.url # timeout=10 > git config -f .gitmodules --get submodule.omero-figure.path # timeout=10 > git config --get submodule.minimal-omero-client.url # timeout=10 > git config -f .gitmodules --get submodule.minimal-omero-client.path # timeout=10 > git config --get submodule.scripts.url # timeout=10 > git config -f .gitmodules --get submodule.scripts.path # timeout=10 > git config --get submodule.omero-test-infra.url # timeout=10 > git config -f .gitmodules --get submodule.omero-test-infra.path # timeout=10 > git config --get submodule.omero-prometheus-tools.url # timeout=10 > git config -f .gitmodules --get submodule.omero-prometheus-tools.path # timeout=10 > git config --get submodule.omero-parade.url # timeout=10 > git config -f .gitmodules --get submodule.omero-parade.path # timeout=10 > git config --get submodule.omero-mapr.url # timeout=10 > git config -f .gitmodules --get submodule.omero-mapr.path # timeout=10 > git config --get submodule.omero-fpbioimage.url # timeout=10 > git config -f .gitmodules --get submodule.omero-fpbioimage.path # timeout=10 > git config --get submodule.omero-iviewer.url # timeout=10 > git config -f .gitmodules --get submodule.omero-iviewer.path # timeout=10 > git config --get submodule.omero-gallery.url # timeout=10 > git config -f .gitmodules --get submodule.omero-gallery.path # timeout=10 > git config --get submodule.rOMERO-gateway.url # timeout=10 > git config -f .gitmodules --get submodule.rOMERO-gateway.path # timeout=10 > git config --get submodule.omero-weberror.url # timeout=10 > git config -f .gitmodules --get submodule.omero-weberror.path # timeout=10 > git config --get submodule.omero-cli-render.url # timeout=10 > git config -f .gitmodules --get submodule.omero-cli-render.path # timeout=10 > git config --get submodule.omero-cli-duplicate.url # timeout=10 > git config -f .gitmodules --get submodule.omero-cli-duplicate.path # timeout=10 > git config --get submodule.omero-metadata.url # timeout=10 > git config -f .gitmodules --get submodule.omero-metadata.path # timeout=10 > git config --get submodule.omero-webtest.url # timeout=10 > git config -f .gitmodules --get submodule.omero-webtest.path # timeout=10 > git config --get submodule.omero-upload.url # timeout=10 > git config -f .gitmodules --get submodule.omero-upload.path # timeout=10 > git config --get submodule.omero-virtual-microscope.url # timeout=10 > git config -f .gitmodules --get submodule.omero-virtual-microscope.path # timeout=10 > git config --get submodule.omero-rois.url # timeout=10 > git config -f .gitmodules --get submodule.omero-rois.path # timeout=10 > git config --get submodule.omero-signup.url # timeout=10 > git config -f .gitmodules --get submodule.omero-signup.path # timeout=10 > git config --get submodule.omero-web-zarr.url # timeout=10 > git config -f .gitmodules --get submodule.omero-web-zarr.path # timeout=10 > git config --get submodule.omero-cli-zarr.url # timeout=10 > git config -f .gitmodules --get submodule.omero-cli-zarr.path # timeout=10 > git submodule update --init --recursive omero-figure # timeout=10 > git submodule update --init --recursive minimal-omero-client # timeout=10 > git submodule update --init --recursive scripts # timeout=10 > git submodule update --init --recursive omero-test-infra # timeout=10 > git submodule update --init --recursive omero-prometheus-tools # timeout=10 > git submodule update --init --recursive omero-parade # timeout=10 > git submodule update --init --recursive omero-mapr # timeout=10 > git submodule update --init --recursive omero-fpbioimage # timeout=10 > git submodule update --init --recursive omero-iviewer # timeout=10 > git submodule update --init --recursive omero-gallery # timeout=10 > git submodule update --init --recursive rOMERO-gateway # timeout=10 > git submodule update --init --recursive omero-weberror # timeout=10 > git submodule update --init --recursive omero-cli-render # timeout=10 > git submodule update --init --recursive omero-cli-duplicate # timeout=10 > git submodule update --init --recursive omero-metadata # timeout=10 > git submodule update --init --recursive omero-webtest # timeout=10 > git submodule update --init --recursive omero-upload # timeout=10 > git submodule update --init --recursive omero-virtual-microscope # timeout=10 > git submodule update --init --recursive omero-rois # timeout=10 > git submodule update --init --recursive omero-signup # timeout=10 > git submodule update --init --recursive omero-web-zarr # timeout=10 > git submodule update --init --recursive omero-cli-zarr # timeout=10 [Pipeline] pwd [Pipeline] copyArtifacts Copied 1 artifact from "OMERO-build-push" build number 549 [Pipeline] sh + pushd build ~/workspace/OMERO-plugins-push/build ~/workspace/OMERO-plugins-push + curl -sfL https://github.com/ome/build-infra/archive/master.tar.gz + tar -zxf - + popd ~/workspace/OMERO-plugins-push + python3.11 -m venv build/venv + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-plugins-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-plugins-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(venv) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + python3.11 -m pip install -U pip Requirement already satisfied: pip in ./build/venv/lib64/python3.11/site-packages (22.3.1) Collecting pip Using cached pip-25.2-py3-none-any.whl (1.8 MB) Installing collected packages: pip Attempting uninstall: pip Found existing installation: pip 22.3.1 Uninstalling pip-22.3.1: Successfully uninstalled pip-22.3.1 Successfully installed pip-25.2 + python3.11 -m pip install scc Collecting scc Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB) Collecting PyGithub>=1.54 (from scc) Using cached pygithub-2.8.1-py3-none-any.whl.metadata (3.9 kB) Collecting PyYAML>=5.1 (from scc) Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) Collecting future (from scc) Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) Collecting ruamel.yaml (from scc) Using cached ruamel.yaml-0.18.15-py3-none-any.whl.metadata (25 kB) Collecting ruamel.yaml.jinja2 (from scc) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB) Collecting six (from scc) Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) Collecting urllib3<2 (from scc) Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB) Collecting yaclifw<0.3,>=0.2.0 (from scc) Using cached yaclifw-0.2.0-py3-none-any.whl Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc) Using cached pynacl-1.6.0-cp38-abi3-manylinux_2_34_x86_64.whl.metadata (9.4 kB) Collecting requests>=2.14.0 (from PyGithub>=1.54->scc) Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB) Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached PyJWT-2.10.1-py3-none-any.whl.metadata (4.0 kB) Collecting typing-extensions>=4.5.0 (from PyGithub>=1.54->scc) Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB) Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cryptography-46.0.1-cp311-abi3-manylinux_2_34_x86_64.whl.metadata (5.7 kB) Collecting cffi>=2.0.0 (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cffi-2.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (2.6 kB) Collecting pycparser (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached pycparser-2.23-py3-none-any.whl.metadata (993 bytes) Collecting charset_normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached charset_normalizer-3.4.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (36 kB) Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached idna-3.10-py3-none-any.whl.metadata (10 kB) Collecting certifi>=2017.4.17 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached certifi-2025.8.3-py3-none-any.whl.metadata (2.4 kB) Collecting ruamel.yaml.clib>=0.2.7 (from ruamel.yaml->scc) Using cached ruamel.yaml.clib-0.2.12-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.7 kB) Using cached scc-0.20.0-py3-none-any.whl (48 kB) Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) Using cached pygithub-2.8.1-py3-none-any.whl (432 kB) Using cached PyJWT-2.10.1-py3-none-any.whl (22 kB) Using cached cryptography-46.0.1-cp311-abi3-manylinux_2_34_x86_64.whl (4.6 MB) Using cached cffi-2.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (215 kB) Using cached pynacl-1.6.0-cp38-abi3-manylinux_2_34_x86_64.whl (1.4 MB) Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB) Using cached requests-2.32.5-py3-none-any.whl (64 kB) Using cached charset_normalizer-3.4.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (150 kB) Using cached idna-3.10-py3-none-any.whl (70 kB) Using cached certifi-2025.8.3-py3-none-any.whl (161 kB) Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB) Using cached future-1.0.0-py3-none-any.whl (491 kB) Using cached pycparser-2.23-py3-none-any.whl (118 kB) Using cached ruamel.yaml-0.18.15-py3-none-any.whl (119 kB) Using cached ruamel.yaml.clib-0.2.12-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (739 kB) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB) Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) Installing collected packages: urllib3, typing-extensions, six, ruamel.yaml.clib, PyYAML, pyjwt, pycparser, idna, future, charset_normalizer, certifi, yaclifw, ruamel.yaml, requests, cffi, ruamel.yaml.jinja2, pynacl, cryptography, PyGithub, scc Successfully installed PyGithub-2.8.1 PyYAML-6.0.2 certifi-2025.8.3 cffi-2.0.0 charset_normalizer-3.4.3 cryptography-46.0.1 future-1.0.0 idna-3.10 pycparser-2.23 pyjwt-2.10.1 pynacl-1.6.0 requests-2.32.5 ruamel.yaml-0.18.15 ruamel.yaml.clib-0.2.12 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.17.0 typing-extensions-4.15.0 urllib3-1.26.20 yaclifw-0.2.0 [Pipeline] sh + export BASE_REPO=omero-plugins.git + BASE_REPO=omero-plugins.git + export BASE_BRANCH=master + BASE_BRANCH=master + export VERSION_LOG=/home/omero/workspace/OMERO-plugins-push/build/version.tsv + VERSION_LOG=/home/omero/workspace/OMERO-plugins-push/build/version.tsv + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-plugins-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-plugins-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(venv) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + '[' merge_ci '!=' null ']' + export PUSH_BRANCH=merge_ci + PUSH_BRANCH=merge_ci + '[' null '!=' null ']' + export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment' + STATUS=success-only + MERGE_OPTIONS='-vvv --no-ask --reset --comment' + bash build/build-infra-master/recursive-merge Merge base repository (no submodule updates) 2025-09-17 00:49:04,661 [ scc.config] DEBUG Found github.token 2025-09-17 00:49:04,662 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-09-17 00:49:04,864 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:49:05,257 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:49:05,671 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2025-09-17 00:49:05,672 [ scc.gh] DEBUG 4961 remaining from 5000 (Reset at 01:09 2025-09-17 00:49:05,672 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-17 00:49:05,675 [ scc.git] DEBUG Check current status 2025-09-17 00:49:05,675 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-17 00:49:05,678 [ scc.git] DEBUG 84258d5 Merge pull request #426 from ome/dependabot/submodules/omero-prometheus-tools-eb47378 2025-09-17 00:49:05,678 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-17 00:49:05,730 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (remotes/origin/HEAD) 2025-09-17 00:49:05,802 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2025-09-17 00:49:06,526 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c) 2025-09-17 00:49:06,793 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587) 2025-09-17 00:49:06,798 [ scc.git] DEBUG fb316a7ee6ca8aa5bc8dc55dd0acfa88fe3ca228 omero-figure (v7.2.0-1-gfb316a7e) 2025-09-17 00:49:06,860 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2025-09-17 00:49:06,968 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2025-09-17 00:49:06,972 [ scc.git] DEBUG b4102d46958a805cacff0c7ccceb05ccff746309 omero-iviewer (v0.15.0-1-gb4102d4) 2025-09-17 00:49:06,976 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2025-09-17 00:49:06,980 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c) 2025-09-17 00:49:07,053 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2025-09-17 00:49:07,135 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2025-09-17 00:49:07,200 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2025-09-17 00:49:07,206 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2025-09-17 00:49:07,262 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6) 2025-09-17 00:49:07,300 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2025-09-17 00:49:07,303 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2025-09-17 00:49:07,485 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313) 2025-09-17 00:49:07,582 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2025-09-17 00:49:07,603 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2025-09-17 00:49:07,607 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2025-09-17 00:49:07,611 [ scc.git] DEBUG 312afbed633613e1f728a1fe9eaac096e54318e0 scripts (v5.8.3-1-g312afbe) 2025-09-17 00:49:07,614 [ scc.config] DEBUG Found remote.origin.url 2025-09-17 00:49:07,866 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins HTTP/1.1" 200 None 2025-09-17 00:49:08,319 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-17 00:49:08,728 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-17 00:49:09,164 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-17 00:49:09,574 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-17 00:49:09,575 [ scc.git] DEBUG Resetting... 2025-09-17 00:49:09,575 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2025-09-17 00:49:09,584 [ scc.git] DEBUG HEAD is now at 84258d5 Merge pull request #426 from ome/dependabot/submodules/omero-prometheus-tools-eb47378 2025-09-17 00:49:09,585 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2025-09-17 00:49:09,697 [ scc.git] DEBUG Check current status 2025-09-17 00:49:09,698 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-17 00:49:09,700 [ scc.git] DEBUG 84258d5 Merge pull request #426 from ome/dependabot/submodules/omero-prometheus-tools-eb47378 2025-09-17 00:49:09,700 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-17 00:49:09,749 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (remotes/origin/HEAD) 2025-09-17 00:49:09,753 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2025-09-17 00:49:09,757 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c) 2025-09-17 00:49:09,760 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587) 2025-09-17 00:49:09,765 [ scc.git] DEBUG fb316a7ee6ca8aa5bc8dc55dd0acfa88fe3ca228 omero-figure (v7.2.0-1-gfb316a7e) 2025-09-17 00:49:09,769 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2025-09-17 00:49:09,772 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2025-09-17 00:49:09,776 [ scc.git] DEBUG b4102d46958a805cacff0c7ccceb05ccff746309 omero-iviewer (v0.15.0-1-gb4102d4) 2025-09-17 00:49:09,779 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2025-09-17 00:49:09,783 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c) 2025-09-17 00:49:09,786 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2025-09-17 00:49:09,789 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2025-09-17 00:49:09,793 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2025-09-17 00:49:09,797 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2025-09-17 00:49:09,800 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6) 2025-09-17 00:49:09,803 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2025-09-17 00:49:09,806 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2025-09-17 00:49:09,809 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313) 2025-09-17 00:49:09,812 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2025-09-17 00:49:09,816 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2025-09-17 00:49:09,819 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2025-09-17 00:49:09,823 [ scc.git] DEBUG 312afbed633613e1f728a1fe9eaac096e54318e0 scripts (v5.8.3-1-g312afbe) 2025-09-17 00:49:09,824 [ scc.merge] INFO Merging Pull Request(s) based on master 2025-09-17 00:49:09,824 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2025-09-17 00:49:09,824 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2025-09-17 00:49:09,824 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2025-09-17 00:49:09,824 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2025-09-17 00:49:09,824 [ scc.repo] DEBUG ## PRs found: 2025-09-17 00:49:10,122 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/pulls HTTP/1.1" 200 None 2025-09-17 00:49:10,613 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/433 HTTP/1.1" 200 None 2025-09-17 00:49:10,614 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-17 00:49:10,614 [ scc.repo] DEBUG - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2025-09-17 00:49:11,096 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/432 HTTP/1.1" 200 None 2025-09-17 00:49:11,097 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-17 00:49:11,097 [ scc.repo] DEBUG - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2025-09-17 00:49:11,575 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/429 HTTP/1.1" 200 None 2025-09-17 00:49:11,575 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-17 00:49:11,576 [ scc.repo] DEBUG - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2025-09-17 00:49:11,576 [ scc.repo] DEBUG ## Branches found: 2025-09-17 00:49:11,576 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:49:11,576 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:49:11,578 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-17 00:49:11,581 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-17 00:49:11,581 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-17 00:49:11,585 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-17 00:49:11,588 [ scc.git] DEBUG Already up to date. 2025-09-17 00:49:11,588 [ scc.git] DEBUG Calling 'git fetch origin pull/429/head' 2025-09-17 00:49:11,888 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2025-09-17 00:49:11,888 [ scc.git] DEBUG * branch refs/pull/429/head -> FETCH_HEAD 2025-09-17 00:49:11,895 [ scc.git] DEBUG Calling 'git fetch origin pull/432/head' 2025-09-17 00:49:12,415 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2025-09-17 00:49:12,415 [ scc.git] DEBUG * branch refs/pull/432/head -> FETCH_HEAD 2025-09-17 00:49:12,423 [ scc.git] DEBUG Calling 'git fetch origin pull/433/head' 2025-09-17 00:49:12,697 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2025-09-17 00:49:12,697 [ scc.git] DEBUG * branch refs/pull/433/head -> FETCH_HEAD 2025-09-17 00:49:12,704 [ scc.git] DEBUG ## Unique users: [] 2025-09-17 00:49:12,704 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:49:12,704 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:49:12,707 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2025-09-17 00:49:12,724 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:49:12,726 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 429 (Bump scripts from `312afbe` to `4b4c755`) 3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2025-09-17 00:49:12,744 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-17 00:49:12,747 [ scc.git] DEBUG scripts | 2 +- 2025-09-17 00:49:12,747 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-09-17 00:49:12,892 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:49:12,892 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25bf90a85a7e0945e652f9d78050c8c4860acb51' 2025-09-17 00:49:12,899 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:49:12,902 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 432 (Bump omero-figure from `fb316a7` to `9cc36cd`) 25bf90a85a7e0945e652f9d78050c8c4860acb51' 2025-09-17 00:49:12,927 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-17 00:49:12,930 [ scc.git] DEBUG omero-figure | 2 +- 2025-09-17 00:49:12,930 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-09-17 00:49:13,287 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:49:13,287 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6fd5dc72efc90d7f749b332dba3f903414852d74' 2025-09-17 00:49:13,518 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:49:13,520 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 433 (Bump omero-iviewer from `b4102d4` to `7a798ce`) 6fd5dc72efc90d7f749b332dba3f903414852d74' 2025-09-17 00:49:13,554 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-17 00:49:13,557 [ scc.git] DEBUG omero-iviewer | 2 +- 2025-09-17 00:49:13,557 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-09-17 00:49:13,691 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:49:13,691 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-17 00:49:13,903 [ scc.git] DEBUG Submodule path 'omero-figure': checked out '9cc36cde05bde4def7b62b07c2e9ae5f66712e96' 2025-09-17 00:49:14,212 [ scc.git] DEBUG Submodule path 'omero-iviewer': checked out '7a798ceeb3926d049d73788555fb63269a071052' 2025-09-17 00:49:14,228 [ scc.git] DEBUG Submodule path 'scripts': checked out '4b4c755af4ccf8a5e709548d1f8415fab48a4867' 2025-09-17 00:49:14,229 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:49:14,229 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:49:14,231 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-17 00:49:15,654 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f2b761b8d10> has no local changes 2025-09-17 00:49:15,654 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone Repository: ome/omero-plugins Already up to date. Merged PRs: - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' Generated by OMERO-plugins-push#534 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/534/)' 2025-09-17 00:49:15,736 [ scc.git] DEBUG [detached HEAD 1c84992] merge master -Dorg -Snone 2025-09-17 00:49:15,736 [ scc.merge] INFO Repository: ome/omero-plugins 2025-09-17 00:49:15,736 [ scc.merge] INFO Already up to date. 2025-09-17 00:49:15,736 [ scc.merge] INFO 2025-09-17 00:49:15,736 [ scc.merge] INFO Merged PRs: 2025-09-17 00:49:15,736 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2025-09-17 00:49:15,736 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2025-09-17 00:49:15,736 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2025-09-17 00:49:15,736 [ scc.merge] INFO 2025-09-17 00:49:15,736 [ scc.merge] DEBUG Cleaning remote branches created for merging 2025-09-17 00:49:15,736 [ scc.git] DEBUG Calling 'git remote' Synchronizing submodule url for 'minimal-omero-client' Synchronizing submodule url for 'omero-cli-duplicate' Synchronizing submodule url for 'omero-cli-render' Synchronizing submodule url for 'omero-cli-zarr' Synchronizing submodule url for 'omero-figure' Synchronizing submodule url for 'omero-fpbioimage' Synchronizing submodule url for 'omero-gallery' Synchronizing submodule url for 'omero-iviewer' Synchronizing submodule url for 'omero-mapr' Synchronizing submodule url for 'omero-metadata' Synchronizing submodule url for 'omero-parade' Synchronizing submodule url for 'omero-prometheus-tools' Synchronizing submodule url for 'omero-rois' Synchronizing submodule url for 'omero-signup' Synchronizing submodule url for 'omero-test-infra' Synchronizing submodule url for 'omero-upload' Synchronizing submodule url for 'omero-virtual-microscope' Synchronizing submodule url for 'omero-web-zarr' Synchronizing submodule url for 'omero-weberror' Synchronizing submodule url for 'omero-webtest' Synchronizing submodule url for 'rOMERO-gateway' Synchronizing submodule url for 'scripts' Submodule path 'omero-cli-zarr': checked out 'f7eea7cd6c149e1c5b2e4648753ac0a1f8a65dfb' Submodule path 'omero-figure': checked out '66607c99ef10bf7997fe30f3813c6f90c401783a' Submodule path 'omero-iviewer': checked out 'bb94cf8da960e3283090038b04432f301560f5e4' Submodule path 'omero-metadata': checked out '55060a256e99567f21e64ff3c225d933fba1c501' Submodule path 'omero-virtual-microscope': checked out '160d894dfb61e69618903425b340c7888f3a934f' Submodule path 'omero-web-zarr': checked out '00e02072dc29b04eba14c080ca8a0175a1499c15' Submodule path 'scripts': checked out '03b9116196e1a799dd18a666559613d912be01a5' Merge all submodules using repository configuration: base-branch: master submodules: scripts: base-branch: develop omero-web-zarr: base-branch: main 2025-09-17 00:49:23,939 [ scc.config] DEBUG Found github.token 2025-09-17 00:49:23,941 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-09-17 00:49:24,130 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:49:24,537 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:49:24,933 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2025-09-17 00:49:24,934 [ scc.gh] DEBUG 4947 remaining from 5000 (Reset at 01:09 2025-09-17 00:49:24,934 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-17 00:49:24,937 [ scc.git] DEBUG Check current status 2025-09-17 00:49:24,937 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-17 00:49:24,939 [ scc.git] DEBUG 1c84992 merge master -Dorg -Snone 2025-09-17 00:49:24,940 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-17 00:49:24,992 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (remotes/origin/HEAD) 2025-09-17 00:49:24,995 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2025-09-17 00:49:24,999 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c) 2025-09-17 00:49:25,003 [ scc.git] DEBUG +f7eea7cd6c149e1c5b2e4648753ac0a1f8a65dfb omero-cli-zarr (v0.6.1-1-gf7eea7c) 2025-09-17 00:49:25,703 [ scc.git] DEBUG +66607c99ef10bf7997fe30f3813c6f90c401783a omero-figure (v7.2.1-82-g66607c99) 2025-09-17 00:49:25,706 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2025-09-17 00:49:25,710 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2025-09-17 00:49:26,184 [ scc.git] DEBUG +bb94cf8da960e3283090038b04432f301560f5e4 omero-iviewer (v0.16.0-16-gbb94cf8) 2025-09-17 00:49:26,187 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2025-09-17 00:49:26,191 [ scc.git] DEBUG +55060a256e99567f21e64ff3c225d933fba1c501 omero-metadata (v0.13.0-8-g55060a2) 2025-09-17 00:49:26,194 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2025-09-17 00:49:26,198 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2025-09-17 00:49:26,202 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2025-09-17 00:49:26,206 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2025-09-17 00:49:26,209 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6) 2025-09-17 00:49:26,213 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2025-09-17 00:49:26,226 [ scc.git] DEBUG +160d894dfb61e69618903425b340c7888f3a934f omero-virtual-microscope (v1.1.1-12-g160d894) 2025-09-17 00:49:26,229 [ scc.git] DEBUG +00e02072dc29b04eba14c080ca8a0175a1499c15 omero-web-zarr (v0.1.1-10-g00e0207) 2025-09-17 00:49:26,232 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2025-09-17 00:49:26,235 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2025-09-17 00:49:26,238 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2025-09-17 00:49:26,243 [ scc.git] DEBUG +03b9116196e1a799dd18a666559613d912be01a5 scripts (v5.9.1-3-g03b9116) 2025-09-17 00:49:26,246 [ scc.config] DEBUG Found remote.origin.url 2025-09-17 00:49:26,246 [ scc.git] DEBUG Reading repository configuration from repositories.yml 2025-09-17 00:49:26,248 [ scc.git] DEBUG Repository configuration: base-branch: master submodules: omero-web-zarr: base-branch: main scripts: base-branch: develop 2025-09-17 00:49:26,511 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins HTTP/1.1" 200 None 2025-09-17 00:49:26,976 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-17 00:49:27,408 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-17 00:49:27,842 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-17 00:49:28,270 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-17 00:49:28,271 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-17 00:49:28,355 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client 2025-09-17 00:49:28,355 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-17 00:49:28,357 [ scc.git] DEBUG Check current status 2025-09-17 00:49:28,357 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-17 00:49:28,360 [ scc.git] DEBUG ca8c2ea Merge pull request #67 from jburel/gateway_5_10_0 2025-09-17 00:49:28,360 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-17 00:49:28,402 [ scc.config] DEBUG Found remote.origin.url 2025-09-17 00:49:28,798 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/minimal-omero-client HTTP/1.1" 200 None 2025-09-17 00:49:29,280 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-17 00:49:29,729 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-17 00:49:30,142 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-17 00:49:30,567 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-17 00:49:30,568 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-17 00:49:30,611 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:49:30,612 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate 2025-09-17 00:49:30,612 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-17 00:49:30,614 [ scc.git] DEBUG Check current status 2025-09-17 00:49:30,614 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-17 00:49:30,616 [ scc.git] DEBUG 4777ef8 Merge pull request #27 from jburel/build 2025-09-17 00:49:30,617 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-17 00:49:30,659 [ scc.config] DEBUG Found remote.origin.url 2025-09-17 00:49:31,077 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate HTTP/1.1" 200 None 2025-09-17 00:49:31,578 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-17 00:49:31,991 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-17 00:49:32,412 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-17 00:49:32,818 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-17 00:49:32,819 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-17 00:49:32,860 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:49:32,860 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render 2025-09-17 00:49:32,860 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-17 00:49:32,862 [ scc.git] DEBUG Check current status 2025-09-17 00:49:32,862 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-17 00:49:32,865 [ scc.git] DEBUG ce6e13c Merge pull request #62 from dominikl/export 2025-09-17 00:49:32,865 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-17 00:49:32,908 [ scc.config] DEBUG Found remote.origin.url 2025-09-17 00:49:33,327 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render HTTP/1.1" 200 None 2025-09-17 00:49:33,787 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-17 00:49:34,208 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-17 00:49:34,645 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-17 00:49:35,082 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-17 00:49:35,083 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-17 00:49:35,124 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:49:35,125 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr 2025-09-17 00:49:35,125 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-17 00:49:35,127 [ scc.git] DEBUG Check current status 2025-09-17 00:49:35,127 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-17 00:49:35,130 [ scc.git] DEBUG f7eea7c Bump version: 0.6.1 → 0.6.2.dev0 2025-09-17 00:49:35,130 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-17 00:49:35,172 [ scc.config] DEBUG Found remote.origin.url 2025-09-17 00:49:35,594 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr HTTP/1.1" 200 None 2025-09-17 00:49:36,064 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-17 00:49:36,472 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-17 00:49:36,896 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-17 00:49:37,307 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-17 00:49:37,308 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-17 00:49:37,350 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:49:37,351 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure 2025-09-17 00:49:37,351 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-17 00:49:37,353 [ scc.git] DEBUG Check current status 2025-09-17 00:49:37,353 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-17 00:49:37,356 [ scc.git] DEBUG 66607c99 Merge pull request #605 from MinaEnayat/calib_bar 2025-09-17 00:49:37,357 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-17 00:49:37,399 [ scc.config] DEBUG Found remote.origin.url 2025-09-17 00:49:37,844 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure HTTP/1.1" 200 None 2025-09-17 00:49:38,333 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-17 00:49:38,767 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-17 00:49:39,191 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-17 00:49:39,598 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-17 00:49:39,599 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-17 00:49:39,638 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:49:39,639 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage 2025-09-17 00:49:39,639 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-17 00:49:39,641 [ scc.git] DEBUG Check current status 2025-09-17 00:49:39,641 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-17 00:49:39,644 [ scc.git] DEBUG 3b6c05a Merge pull request #30 from jburel/build 2025-09-17 00:49:39,644 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-17 00:49:39,687 [ scc.config] DEBUG Found remote.origin.url 2025-09-17 00:49:40,121 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage HTTP/1.1" 200 None 2025-09-17 00:49:40,570 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-17 00:49:41,042 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-17 00:49:41,471 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-17 00:49:41,887 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-17 00:49:41,887 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-17 00:49:41,930 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:49:41,930 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery 2025-09-17 00:49:41,930 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-17 00:49:41,933 [ scc.git] DEBUG Check current status 2025-09-17 00:49:41,933 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-17 00:49:41,935 [ scc.git] DEBUG 2a621da Merge pull request #112 from jburel/build 2025-09-17 00:49:41,935 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-17 00:49:41,976 [ scc.config] DEBUG Found remote.origin.url 2025-09-17 00:49:42,390 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery HTTP/1.1" 200 None 2025-09-17 00:49:42,836 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-17 00:49:43,240 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-17 00:49:43,637 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-17 00:49:44,048 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-17 00:49:44,049 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-17 00:49:44,089 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:49:44,090 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer 2025-09-17 00:49:44,090 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-17 00:49:44,092 [ scc.git] DEBUG Check current status 2025-09-17 00:49:44,092 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-17 00:49:44,095 [ scc.git] DEBUG bb94cf8 Merge pull request #506 from will-moore/pypi_release_action 2025-09-17 00:49:44,095 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-17 00:49:44,136 [ scc.config] DEBUG Found remote.origin.url 2025-09-17 00:49:44,604 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer HTTP/1.1" 200 None 2025-09-17 00:49:45,076 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-17 00:49:45,478 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-17 00:49:45,906 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-17 00:49:46,306 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-17 00:49:46,307 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-17 00:49:46,347 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:49:46,348 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr 2025-09-17 00:49:46,348 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-17 00:49:46,350 [ scc.git] DEBUG Check current status 2025-09-17 00:49:46,350 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-17 00:49:46,352 [ scc.git] DEBUG 0a557da Bump version: 0.5.3 → 0.5.4.dev0 2025-09-17 00:49:46,352 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-17 00:49:46,393 [ scc.config] DEBUG Found remote.origin.url 2025-09-17 00:49:46,820 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr HTTP/1.1" 200 None 2025-09-17 00:49:47,274 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-17 00:49:47,693 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-17 00:49:48,123 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-17 00:49:48,537 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-17 00:49:48,538 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-17 00:49:48,577 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:49:48,578 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata 2025-09-17 00:49:48,578 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-17 00:49:48,580 [ scc.git] DEBUG Check current status 2025-09-17 00:49:48,580 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-17 00:49:48,583 [ scc.git] DEBUG 55060a2 Merge pull request #90 from will-moore/pypi_release_action 2025-09-17 00:49:48,583 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-17 00:49:48,624 [ scc.config] DEBUG Found remote.origin.url 2025-09-17 00:49:49,055 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata HTTP/1.1" 200 None 2025-09-17 00:49:49,527 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-17 00:49:49,943 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-17 00:49:50,362 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-17 00:49:50,788 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-17 00:49:50,789 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-17 00:49:50,829 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:49:50,829 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade 2025-09-17 00:49:50,829 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-17 00:49:50,831 [ scc.git] DEBUG Check current status 2025-09-17 00:49:50,831 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-17 00:49:50,834 [ scc.git] DEBUG fb5ae86 Merge pull request #133 from jburel/build 2025-09-17 00:49:50,834 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-17 00:49:50,875 [ scc.config] DEBUG Found remote.origin.url 2025-09-17 00:49:51,274 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade HTTP/1.1" 200 None 2025-09-17 00:49:51,737 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-17 00:49:52,164 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-17 00:49:52,605 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-17 00:49:53,003 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-17 00:49:53,004 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-17 00:49:53,044 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:49:53,044 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools 2025-09-17 00:49:53,045 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-17 00:49:53,047 [ scc.git] DEBUG Check current status 2025-09-17 00:49:53,047 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-17 00:49:53,049 [ scc.git] DEBUG eb47378 Merge pull request #15 from jburel/build 2025-09-17 00:49:53,049 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-17 00:49:53,091 [ scc.config] DEBUG Found remote.origin.url 2025-09-17 00:49:53,547 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools HTTP/1.1" 200 None 2025-09-17 00:49:54,021 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-17 00:49:54,421 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-17 00:49:54,844 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-17 00:49:55,270 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-17 00:49:55,271 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-17 00:49:55,309 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:49:55,310 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois 2025-09-17 00:49:55,310 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-17 00:49:55,312 [ scc.git] DEBUG Check current status 2025-09-17 00:49:55,312 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-17 00:49:55,314 [ scc.git] DEBUG bdfeb5e bump sphinx version 2025-09-17 00:49:55,315 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-17 00:49:55,355 [ scc.config] DEBUG Found remote.origin.url 2025-09-17 00:49:55,937 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois HTTP/1.1" 200 None 2025-09-17 00:49:56,439 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-17 00:49:56,857 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-17 00:49:57,274 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-17 00:49:57,690 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-17 00:49:57,691 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-17 00:49:57,730 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:49:57,730 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup 2025-09-17 00:49:57,730 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-17 00:49:57,732 [ scc.git] DEBUG Check current status 2025-09-17 00:49:57,732 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-17 00:49:57,735 [ scc.git] DEBUG be76813 Merge pull request #21 from jburel/build 2025-09-17 00:49:57,735 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-17 00:49:57,776 [ scc.config] DEBUG Found remote.origin.url 2025-09-17 00:49:58,206 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup HTTP/1.1" 200 None 2025-09-17 00:49:58,689 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-17 00:49:59,097 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-17 00:49:59,503 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-17 00:49:59,917 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-17 00:49:59,918 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-17 00:49:59,957 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:49:59,958 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra 2025-09-17 00:49:59,958 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-17 00:49:59,960 [ scc.git] DEBUG Check current status 2025-09-17 00:49:59,960 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-17 00:49:59,963 [ scc.git] DEBUG cda3ec6 Merge pull request #70 from jburel/toml_support 2025-09-17 00:49:59,963 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-17 00:50:00,004 [ scc.config] DEBUG Found remote.origin.url 2025-09-17 00:50:00,357 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-test-infra HTTP/1.1" 301 198 Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 2025-09-17 00:50:00,359 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 2025-09-17 00:50:00,633 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/111908919 HTTP/1.1" 200 None 2025-09-17 00:50:01,094 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-17 00:50:01,542 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-17 00:50:02,025 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-17 00:50:02,465 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-17 00:50:02,466 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-17 00:50:02,505 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:50:02,505 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload 2025-09-17 00:50:02,505 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-17 00:50:02,507 [ scc.git] DEBUG Check current status 2025-09-17 00:50:02,507 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-17 00:50:02,510 [ scc.git] DEBUG 100f6ae Merge pull request #13 from jburel/build 2025-09-17 00:50:02,510 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-17 00:50:02,551 [ scc.config] DEBUG Found remote.origin.url 2025-09-17 00:50:02,982 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload HTTP/1.1" 200 None 2025-09-17 00:50:03,459 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-17 00:50:03,882 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-17 00:50:04,286 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-17 00:50:04,717 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-17 00:50:04,718 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-17 00:50:04,759 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:50:04,759 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope 2025-09-17 00:50:04,759 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-17 00:50:04,761 [ scc.git] DEBUG Check current status 2025-09-17 00:50:04,761 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-17 00:50:04,764 [ scc.git] DEBUG 160d894 Fix display of code 2025-09-17 00:50:04,764 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-17 00:50:04,804 [ scc.config] DEBUG Found remote.origin.url 2025-09-17 00:50:05,226 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope HTTP/1.1" 200 None 2025-09-17 00:50:05,707 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-17 00:50:06,109 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-17 00:50:06,524 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-17 00:50:06,932 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-17 00:50:06,932 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-17 00:50:06,972 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:50:06,973 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr 2025-09-17 00:50:06,973 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-17 00:50:06,975 [ scc.git] DEBUG Check current status 2025-09-17 00:50:06,975 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-17 00:50:06,977 [ scc.git] DEBUG 00e0207 Merge pull request #20 from will-moore/zarr_python_v3 2025-09-17 00:50:06,978 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-17 00:50:07,018 [ scc.config] DEBUG Found remote.origin.url 2025-09-17 00:50:07,019 [ scc.git] DEBUG Repository configuration: base-branch: main 2025-09-17 00:50:07,666 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr HTTP/1.1" 200 None 2025-09-17 00:50:08,143 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-17 00:50:08,558 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-17 00:50:09,059 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-17 00:50:09,485 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-17 00:50:09,486 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-17 00:50:09,526 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:50:09,527 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror 2025-09-17 00:50:09,527 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-17 00:50:09,529 [ scc.git] DEBUG Check current status 2025-09-17 00:50:09,529 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-17 00:50:09,531 [ scc.git] DEBUG 70b01ed Merge pull request #24 from jburel/build 2025-09-17 00:50:09,531 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-17 00:50:09,573 [ scc.config] DEBUG Found remote.origin.url 2025-09-17 00:50:09,906 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-weberror HTTP/1.1" 301 197 Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 2025-09-17 00:50:09,907 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 2025-09-17 00:50:10,193 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/38373425 HTTP/1.1" 200 None 2025-09-17 00:50:10,650 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-17 00:50:11,064 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-17 00:50:11,483 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-17 00:50:11,886 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-17 00:50:11,887 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-17 00:50:11,927 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:50:11,927 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest 2025-09-17 00:50:11,927 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-17 00:50:11,929 [ scc.git] DEBUG Check current status 2025-09-17 00:50:11,929 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-17 00:50:11,932 [ scc.git] DEBUG 5bfef29 Merge pull request #36 from jburel/build 2025-09-17 00:50:11,932 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-17 00:50:11,972 [ scc.config] DEBUG Found remote.origin.url 2025-09-17 00:50:12,327 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-webtest HTTP/1.1" 301 197 Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 2025-09-17 00:50:12,327 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 2025-09-17 00:50:12,581 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/25970383 HTTP/1.1" 200 None 2025-09-17 00:50:13,047 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-17 00:50:13,459 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-17 00:50:13,866 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-17 00:50:14,307 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-17 00:50:14,308 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-17 00:50:14,348 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:50:14,348 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway 2025-09-17 00:50:14,348 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-17 00:50:14,350 [ scc.git] DEBUG Check current status 2025-09-17 00:50:14,350 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-17 00:50:14,352 [ scc.git] DEBUG 7b5d64d Merge pull request #106 from dominikl/add_examples_2 2025-09-17 00:50:14,353 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-17 00:50:14,394 [ scc.config] DEBUG Found remote.origin.url 2025-09-17 00:50:14,829 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway HTTP/1.1" 200 None 2025-09-17 00:50:15,309 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-17 00:50:15,726 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-17 00:50:16,137 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-17 00:50:16,553 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-17 00:50:16,554 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-17 00:50:16,594 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:50:16,594 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts 2025-09-17 00:50:16,594 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-17 00:50:16,597 [ scc.git] DEBUG Check current status 2025-09-17 00:50:16,597 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-17 00:50:16,599 [ scc.git] DEBUG 03b9116 Merge pull request #228 from ome/dependabot/github_actions/dot-github/workflows/pypa/gh-action-pypi-publish-1.13.0 2025-09-17 00:50:16,600 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-17 00:50:16,639 [ scc.config] DEBUG Found remote.origin.url 2025-09-17 00:50:16,640 [ scc.git] DEBUG Repository configuration: base-branch: develop 2025-09-17 00:50:16,992 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/scripts HTTP/1.1" 301 196 Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2025-09-17 00:50:16,993 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2025-09-17 00:50:17,227 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/4865545 HTTP/1.1" 200 None 2025-09-17 00:50:17,705 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-17 00:50:18,107 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-17 00:50:18,502 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-17 00:50:18,909 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-17 00:50:18,910 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-17 00:50:18,951 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:50:18,951 [ scc.git] DEBUG Resetting... 2025-09-17 00:50:18,951 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2025-09-17 00:50:18,959 [ scc.git] DEBUG HEAD is now at 1c84992 merge master -Dorg -Snone 2025-09-17 00:50:18,959 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2025-09-17 00:50:19,022 [ scc.git] DEBUG Submodule path 'omero-cli-zarr': checked out '11d35873542022d9638ede115d0dfab4652f8e62' 2025-09-17 00:50:19,047 [ scc.git] DEBUG Submodule path 'omero-figure': checked out '9cc36cde05bde4def7b62b07c2e9ae5f66712e96' 2025-09-17 00:50:19,072 [ scc.git] DEBUG Submodule path 'omero-iviewer': checked out '7a798ceeb3926d049d73788555fb63269a071052' 2025-09-17 00:50:19,088 [ scc.git] DEBUG Submodule path 'omero-metadata': checked out '3cd120cf6f10f71421a4db91fa87baba865c7997' 2025-09-17 00:50:19,120 [ scc.git] DEBUG Submodule path 'omero-virtual-microscope': checked out 'deab81790f403bef598915b89b5300258b44a743' 2025-09-17 00:50:19,132 [ scc.git] DEBUG Submodule path 'omero-web-zarr': checked out '8f3c31388de8a7c44f18a6f0e20ea41d35fae041' 2025-09-17 00:50:19,159 [ scc.git] DEBUG Submodule path 'scripts': checked out '4b4c755af4ccf8a5e709548d1f8415fab48a4867' 2025-09-17 00:50:19,163 [ scc.git] DEBUG Check current status 2025-09-17 00:50:19,163 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-17 00:50:19,165 [ scc.git] DEBUG 1c84992 merge master -Dorg -Snone 2025-09-17 00:50:19,166 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-17 00:50:19,214 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (remotes/origin/HEAD) 2025-09-17 00:50:19,217 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2025-09-17 00:50:19,221 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c) 2025-09-17 00:50:19,225 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587) 2025-09-17 00:50:19,230 [ scc.git] DEBUG 9cc36cde05bde4def7b62b07c2e9ae5f66712e96 omero-figure (v7.2.1-3-g9cc36cde) 2025-09-17 00:50:19,233 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2025-09-17 00:50:19,236 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2025-09-17 00:50:19,241 [ scc.git] DEBUG 7a798ceeb3926d049d73788555fb63269a071052 omero-iviewer (v0.16.0-14-g7a798ce) 2025-09-17 00:50:19,244 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2025-09-17 00:50:19,247 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c) 2025-09-17 00:50:19,251 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2025-09-17 00:50:19,254 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2025-09-17 00:50:19,258 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2025-09-17 00:50:19,261 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2025-09-17 00:50:19,265 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6) 2025-09-17 00:50:19,268 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2025-09-17 00:50:19,271 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2025-09-17 00:50:19,274 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313) 2025-09-17 00:50:19,277 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2025-09-17 00:50:19,280 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2025-09-17 00:50:19,283 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2025-09-17 00:50:19,287 [ scc.git] DEBUG 4b4c755af4ccf8a5e709548d1f8415fab48a4867 scripts (v5.9.0-1-g4b4c755) 2025-09-17 00:50:19,288 [ scc.merge] INFO Merging Pull Request(s) based on master 2025-09-17 00:50:19,288 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2025-09-17 00:50:19,288 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2025-09-17 00:50:19,288 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2025-09-17 00:50:19,288 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2025-09-17 00:50:19,288 [ scc.merge] INFO Excluding Pull Request(s) without successful status 2025-09-17 00:50:19,288 [ scc.repo] DEBUG ## PRs found: 2025-09-17 00:50:19,528 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/pulls HTTP/1.1" 200 None 2025-09-17 00:50:20,028 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/433 HTTP/1.1" 200 None 2025-09-17 00:50:20,029 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-17 00:50:20,568 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74 HTTP/1.1" 200 None 2025-09-17 00:50:21,030 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:50:21,565 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74 HTTP/1.1" 200 None 2025-09-17 00:50:22,004 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/6fd5dc72efc90d7f749b332dba3f903414852d74?per_page=1 HTTP/1.1" 200 2 2025-09-17 00:50:22,004 [ scc.repo] DEBUG - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2025-09-17 00:50:22,674 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/432 HTTP/1.1" 200 None 2025-09-17 00:50:22,675 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-17 00:50:23,272 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51 HTTP/1.1" 200 None 2025-09-17 00:50:23,736 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:50:24,270 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51 HTTP/1.1" 200 None 2025-09-17 00:50:24,730 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/25bf90a85a7e0945e652f9d78050c8c4860acb51?per_page=1 HTTP/1.1" 200 2 2025-09-17 00:50:24,730 [ scc.repo] DEBUG - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2025-09-17 00:50:25,207 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/429 HTTP/1.1" 200 None 2025-09-17 00:50:25,207 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-17 00:50:25,786 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2 HTTP/1.1" 200 None 2025-09-17 00:50:26,248 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:50:26,714 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2 HTTP/1.1" 200 None 2025-09-17 00:50:27,129 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/3062fb487d55aef3602ecee795b63ccb73d1f8e2?per_page=1 HTTP/1.1" 200 2 2025-09-17 00:50:27,129 [ scc.repo] DEBUG - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2025-09-17 00:50:27,129 [ scc.repo] DEBUG ## Branches found: 2025-09-17 00:50:27,130 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:50:27,130 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:50:27,132 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-17 00:50:27,134 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-17 00:50:27,135 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-17 00:50:27,137 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-17 00:50:27,141 [ scc.git] DEBUG Already up to date. 2025-09-17 00:50:27,141 [ scc.git] DEBUG Calling 'git fetch origin pull/429/head' 2025-09-17 00:50:27,424 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2025-09-17 00:50:27,424 [ scc.git] DEBUG * branch refs/pull/429/head -> FETCH_HEAD 2025-09-17 00:50:27,431 [ scc.git] DEBUG Calling 'git fetch origin pull/432/head' 2025-09-17 00:50:27,706 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2025-09-17 00:50:27,706 [ scc.git] DEBUG * branch refs/pull/432/head -> FETCH_HEAD 2025-09-17 00:50:27,713 [ scc.git] DEBUG Calling 'git fetch origin pull/433/head' 2025-09-17 00:50:27,991 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2025-09-17 00:50:27,991 [ scc.git] DEBUG * branch refs/pull/433/head -> FETCH_HEAD 2025-09-17 00:50:27,999 [ scc.git] DEBUG ## Unique users: [] 2025-09-17 00:50:27,999 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:50:27,999 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:50:28,001 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2025-09-17 00:50:28,004 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:50:28,006 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 429 (Bump scripts from `312afbe` to `4b4c755`) 3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2025-09-17 00:50:28,009 [ scc.git] DEBUG Already up to date. 2025-09-17 00:50:28,153 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:50:28,153 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25bf90a85a7e0945e652f9d78050c8c4860acb51' 2025-09-17 00:50:28,156 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:50:28,159 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 432 (Bump omero-figure from `fb316a7` to `9cc36cd`) 25bf90a85a7e0945e652f9d78050c8c4860acb51' 2025-09-17 00:50:28,162 [ scc.git] DEBUG Already up to date. 2025-09-17 00:50:28,535 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:50:28,535 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6fd5dc72efc90d7f749b332dba3f903414852d74' 2025-09-17 00:50:28,539 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:50:28,541 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 433 (Bump omero-iviewer from `b4102d4` to `7a798ce`) 6fd5dc72efc90d7f749b332dba3f903414852d74' 2025-09-17 00:50:28,544 [ scc.git] DEBUG Already up to date. 2025-09-17 00:50:28,944 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:50:28,944 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-17 00:50:29,001 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:50:29,001 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:50:29,003 [ scc.repo] DEBUG ## PRs found: 2025-09-17 00:50:29,380 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/minimal-omero-client/pulls HTTP/1.1" 200 2 2025-09-17 00:50:29,380 [ scc.repo] DEBUG ## Branches found: 2025-09-17 00:50:29,380 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client 2025-09-17 00:50:29,380 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:50:29,380 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:50:29,382 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-17 00:50:29,385 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-17 00:50:29,385 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-17 00:50:29,388 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-17 00:50:29,391 [ scc.git] DEBUG Already up to date. 2025-09-17 00:50:29,391 [ scc.git] DEBUG ## Unique users: [] 2025-09-17 00:50:29,391 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:50:29,391 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:50:29,394 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-17 00:50:29,434 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:50:29,434 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:50:29,436 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-17 00:50:29,475 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-17 00:50:29,479 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7501c90050> has no local changes 2025-09-17 00:50:29,479 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/minimal-omero-client Already up to date. Generated by OMERO-plugins-push#534 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/534/)' 2025-09-17 00:50:29,486 [ scc.git] DEBUG [detached HEAD 1e93c7c] merge master -Dorg -Ssuccess-only 2025-09-17 00:50:29,486 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:50:29,486 [ scc.repo] DEBUG ## PRs found: 2025-09-17 00:50:29,969 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/pulls HTTP/1.1" 200 None 2025-09-17 00:50:30,477 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/29 HTTP/1.1" 200 None 2025-09-17 00:50:30,478 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-17 00:50:31,057 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4 HTTP/1.1" 200 None 2025-09-17 00:50:31,570 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:50:32,067 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-17 00:50:32,683 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4 HTTP/1.1" 200 None 2025-09-17 00:50:33,091 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/statuses/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4?per_page=1 HTTP/1.1" 200 2 2025-09-17 00:50:33,092 [ scc.repo] DEBUG - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-17 00:50:33,584 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/18 HTTP/1.1" 200 None 2025-09-17 00:50:34,053 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/18/comments HTTP/1.1" 200 None 2025-09-17 00:50:34,054 [ scc.repo] DEBUG ## Branches found: 2025-09-17 00:50:34,054 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate 2025-09-17 00:50:34,054 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:50:34,054 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:50:34,057 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-17 00:50:34,060 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-17 00:50:34,060 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-17 00:50:34,063 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-17 00:50:34,067 [ scc.git] DEBUG Already up to date. 2025-09-17 00:50:34,067 [ scc.git] DEBUG Calling 'git fetch origin pull/29/head' 2025-09-17 00:50:34,356 [ scc.git] DEBUG From https://github.com/ome/omero-cli-duplicate 2025-09-17 00:50:34,356 [ scc.git] DEBUG * branch refs/pull/29/head -> FETCH_HEAD 2025-09-17 00:50:34,360 [ scc.git] DEBUG ## Unique users: [] 2025-09-17 00:50:34,361 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:50:34,361 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:50:34,363 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4' 2025-09-17 00:50:34,366 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:50:34,369 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 29 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4' 2025-09-17 00:50:34,377 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-17 00:50:34,380 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-09-17 00:50:34,380 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-09-17 00:50:34,540 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:50:34,540 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-17 00:50:34,582 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:50:34,582 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:50:34,585 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-17 00:50:34,627 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-17 00:50:34,631 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7501de7910> has no local changes 2025-09-17 00:50:34,631 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-cli-duplicate Excluded PRs: - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment) Already up to date. Merged PRs: - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#534 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/534/)' 2025-09-17 00:50:34,637 [ scc.git] DEBUG [detached HEAD fbe21f1] merge master -Dorg -Ssuccess-only 2025-09-17 00:50:34,637 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:50:34,638 [ scc.repo] DEBUG ## PRs found: 2025-09-17 00:50:35,233 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls HTTP/1.1" 200 None 2025-09-17 00:50:35,736 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/73 HTTP/1.1" 200 None 2025-09-17 00:50:35,737 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-17 00:50:36,311 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/d230161123b7bbfcb9363e02bbe289367c532cdc HTTP/1.1" 200 None 2025-09-17 00:50:36,897 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/d230161123b7bbfcb9363e02bbe289367c532cdc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:50:37,449 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/d230161123b7bbfcb9363e02bbe289367c532cdc/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-17 00:50:37,951 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/d230161123b7bbfcb9363e02bbe289367c532cdc HTTP/1.1" 200 None 2025-09-17 00:50:38,373 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/statuses/d230161123b7bbfcb9363e02bbe289367c532cdc?per_page=1 HTTP/1.1" 200 2 2025-09-17 00:50:38,374 [ scc.repo] DEBUG - PR 73 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-17 00:50:38,852 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/71 HTTP/1.1" 200 None 2025-09-17 00:50:39,361 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/530b6b0ab1346ef837188b2eb3b1a5f679b490b6 HTTP/1.1" 200 None 2025-09-17 00:50:39,822 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/530b6b0ab1346ef837188b2eb3b1a5f679b490b6/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:50:40,338 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/530b6b0ab1346ef837188b2eb3b1a5f679b490b6 HTTP/1.1" 200 None 2025-09-17 00:50:40,761 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/statuses/530b6b0ab1346ef837188b2eb3b1a5f679b490b6?per_page=1 HTTP/1.1" 200 2 2025-09-17 00:50:40,761 [ scc.repo] DEBUG - PR 71 dominikl 'Escape slash character in image names' 2025-09-17 00:50:41,245 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/70 HTTP/1.1" 200 None 2025-09-17 00:50:41,697 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/69 HTTP/1.1" 200 None 2025-09-17 00:50:42,223 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/eb65a6621a6b07771ed3410c81ddaa1731004c22 HTTP/1.1" 200 None 2025-09-17 00:50:42,725 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/eb65a6621a6b07771ed3410c81ddaa1731004c22/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:50:43,257 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/eb65a6621a6b07771ed3410c81ddaa1731004c22/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-17 00:50:43,748 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/eb65a6621a6b07771ed3410c81ddaa1731004c22 HTTP/1.1" 200 None 2025-09-17 00:50:44,160 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/statuses/eb65a6621a6b07771ed3410c81ddaa1731004c22?per_page=1 HTTP/1.1" 200 2 2025-09-17 00:50:44,161 [ scc.repo] DEBUG - PR 69 dominikl 'Fix help text for impo/export commands' 2025-09-17 00:50:44,617 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/59 HTTP/1.1" 200 None 2025-09-17 00:50:45,058 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/59/comments HTTP/1.1" 200 None 2025-09-17 00:50:45,585 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/75fc40970592eca2babd405b65a372f328fb679a HTTP/1.1" 200 None 2025-09-17 00:50:46,054 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/75fc40970592eca2babd405b65a372f328fb679a/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:50:46,527 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/75fc40970592eca2babd405b65a372f328fb679a/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-17 00:50:47,008 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/75fc40970592eca2babd405b65a372f328fb679a HTTP/1.1" 200 None 2025-09-17 00:50:47,430 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/statuses/75fc40970592eca2babd405b65a372f328fb679a?per_page=1 HTTP/1.1" 200 2 2025-09-17 00:50:47,430 [ scc.repo] DEBUG - PR 59 will-moore 'Apply settings to Plate' 2025-09-17 00:50:47,885 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/52 HTTP/1.1" 200 None 2025-09-17 00:50:48,327 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/52/comments HTTP/1.1" 200 None 2025-09-17 00:50:48,328 [ scc.repo] DEBUG ## Branches found: 2025-09-17 00:50:48,328 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render 2025-09-17 00:50:48,328 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:50:48,328 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:50:48,331 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-17 00:50:48,334 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-17 00:50:48,334 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-17 00:50:48,337 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-17 00:50:48,340 [ scc.git] DEBUG Already up to date. 2025-09-17 00:50:48,340 [ scc.git] DEBUG Calling 'git fetch origin pull/59/head' 2025-09-17 00:50:49,614 [ scc.git] DEBUG From https://github.com/ome/omero-cli-render 2025-09-17 00:50:49,614 [ scc.git] DEBUG * branch refs/pull/59/head -> FETCH_HEAD 2025-09-17 00:50:49,619 [ scc.git] DEBUG Calling 'git fetch origin pull/69/head' 2025-09-17 00:50:49,904 [ scc.git] DEBUG From https://github.com/ome/omero-cli-render 2025-09-17 00:50:49,904 [ scc.git] DEBUG * branch refs/pull/69/head -> FETCH_HEAD 2025-09-17 00:50:49,908 [ scc.git] DEBUG Calling 'git fetch origin pull/71/head' 2025-09-17 00:50:50,266 [ scc.git] DEBUG From https://github.com/ome/omero-cli-render 2025-09-17 00:50:50,266 [ scc.git] DEBUG * branch refs/pull/71/head -> FETCH_HEAD 2025-09-17 00:50:50,271 [ scc.git] DEBUG Calling 'git fetch origin pull/73/head' 2025-09-17 00:50:50,549 [ scc.git] DEBUG From https://github.com/ome/omero-cli-render 2025-09-17 00:50:50,549 [ scc.git] DEBUG * branch refs/pull/73/head -> FETCH_HEAD 2025-09-17 00:50:50,553 [ scc.git] DEBUG ## Unique users: [] 2025-09-17 00:50:50,553 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:50:50,553 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:50:50,556 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...75fc40970592eca2babd405b65a372f328fb679a' 2025-09-17 00:50:50,560 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:50:50,562 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 59 (Apply settings to Plate) 75fc40970592eca2babd405b65a372f328fb679a' 2025-09-17 00:50:50,611 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-17 00:50:50,614 [ scc.git] DEBUG src/omero_cli_render.py | 159 +++++++++++++++++++++++++++--------------------- 2025-09-17 00:50:50,614 [ scc.git] DEBUG 1 file changed, 89 insertions(+), 70 deletions(-) 2025-09-17 00:50:50,760 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:50:50,761 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...eb65a6621a6b07771ed3410c81ddaa1731004c22' 2025-09-17 00:50:50,765 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:50:50,767 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 69 (Fix help text for impo/export commands) eb65a6621a6b07771ed3410c81ddaa1731004c22' 2025-09-17 00:50:50,899 [ scc.git] DEBUG Auto-merging src/omero_cli_render.py 2025-09-17 00:50:50,900 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-17 00:50:50,903 [ scc.git] DEBUG src/omero_cli_render.py | 14 ++++++-------- 2025-09-17 00:50:50,903 [ scc.git] DEBUG 1 file changed, 6 insertions(+), 8 deletions(-) 2025-09-17 00:50:51,145 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:50:51,145 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...530b6b0ab1346ef837188b2eb3b1a5f679b490b6' 2025-09-17 00:50:51,150 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:50:51,152 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 71 (Escape slash character in image names) 530b6b0ab1346ef837188b2eb3b1a5f679b490b6' 2025-09-17 00:50:51,231 [ scc.git] DEBUG Auto-merging src/omero_cli_render.py 2025-09-17 00:50:51,232 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-17 00:50:51,235 [ scc.git] DEBUG src/omero_cli_render.py | 21 ++++++++++++++------- 2025-09-17 00:50:51,235 [ scc.git] DEBUG 1 file changed, 14 insertions(+), 7 deletions(-) 2025-09-17 00:50:51,536 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:50:51,536 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d230161123b7bbfcb9363e02bbe289367c532cdc' 2025-09-17 00:50:51,584 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:50:51,587 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 73 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) d230161123b7bbfcb9363e02bbe289367c532cdc' 2025-09-17 00:50:51,596 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-17 00:50:51,599 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-09-17 00:50:51,599 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-09-17 00:50:51,934 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:50:51,935 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-17 00:50:51,975 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:50:51,975 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:50:51,978 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-17 00:50:52,019 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-17 00:50:52,023 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7501c7b5d0> has no local changes 2025-09-17 00:50:52,023 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-cli-render Excluded PRs: - PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft) - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft) Already up to date. Merged PRs: - PR 59 will-moore 'Apply settings to Plate' - PR 69 dominikl 'Fix help text for impo/export commands' - PR 71 dominikl 'Escape slash character in image names' - PR 73 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#534 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/534/)' 2025-09-17 00:50:52,029 [ scc.git] DEBUG [detached HEAD 5436d00] merge master -Dorg -Ssuccess-only 2025-09-17 00:50:52,030 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:50:52,030 [ scc.repo] DEBUG ## PRs found: 2025-09-17 00:50:52,531 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls HTTP/1.1" 200 None 2025-09-17 00:50:53,027 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/180 HTTP/1.1" 200 None 2025-09-17 00:50:53,499 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/180/comments HTTP/1.1" 200 None 2025-09-17 00:50:54,002 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/dbe12f4006b8d04d44b581b985571d4de378ab2b HTTP/1.1" 200 None 2025-09-17 00:50:54,486 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/dbe12f4006b8d04d44b581b985571d4de378ab2b/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:50:54,947 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/dbe12f4006b8d04d44b581b985571d4de378ab2b/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-17 00:50:55,444 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/dbe12f4006b8d04d44b581b985571d4de378ab2b HTTP/1.1" 200 None 2025-09-17 00:50:55,879 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/dbe12f4006b8d04d44b581b985571d4de378ab2b?per_page=1 HTTP/1.1" 200 None 2025-09-17 00:50:56,360 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/dbe12f4006b8d04d44b581b985571d4de378ab2b HTTP/1.1" 200 None 2025-09-17 00:50:56,786 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/dbe12f4006b8d04d44b581b985571d4de378ab2b/status HTTP/1.1" 200 None 2025-09-17 00:50:56,787 [ scc.repo] DEBUG - PR 180 will-moore 'Import command' 2025-09-17 00:50:57,322 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/178 HTTP/1.1" 200 None 2025-09-17 00:50:57,757 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/178/comments HTTP/1.1" 200 None 2025-09-17 00:50:58,319 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bb180dbb97ddc67cd2cf655d56058ba7da765769 HTTP/1.1" 200 None 2025-09-17 00:50:58,776 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bb180dbb97ddc67cd2cf655d56058ba7da765769/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:50:59,229 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bb180dbb97ddc67cd2cf655d56058ba7da765769/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-17 00:50:59,732 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bb180dbb97ddc67cd2cf655d56058ba7da765769 HTTP/1.1" 200 None 2025-09-17 00:51:00,172 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/bb180dbb97ddc67cd2cf655d56058ba7da765769?per_page=1 HTTP/1.1" 200 None 2025-09-17 00:51:00,716 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bb180dbb97ddc67cd2cf655d56058ba7da765769 HTTP/1.1" 200 None 2025-09-17 00:51:01,145 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bb180dbb97ddc67cd2cf655d56058ba7da765769/status HTTP/1.1" 200 None 2025-09-17 00:51:01,146 [ scc.repo] DEBUG - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' 2025-09-17 00:51:01,619 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/174 HTTP/1.1" 200 None 2025-09-17 00:51:02,108 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/174/comments HTTP/1.1" 200 None 2025-09-17 00:51:02,583 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/172 HTTP/1.1" 200 None 2025-09-17 00:51:03,050 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/172/comments HTTP/1.1" 200 None 2025-09-17 00:51:03,529 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/170 HTTP/1.1" 200 None 2025-09-17 00:51:04,017 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/169 HTTP/1.1" 200 None 2025-09-17 00:51:04,519 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/167 HTTP/1.1" 200 None 2025-09-17 00:51:05,023 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/167/comments HTTP/1.1" 200 None 2025-09-17 00:51:05,509 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/166 HTTP/1.1" 200 None 2025-09-17 00:51:06,020 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/162 HTTP/1.1" 200 None 2025-09-17 00:51:06,508 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/123 HTTP/1.1" 200 None 2025-09-17 00:51:06,983 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/123/comments HTTP/1.1" 200 None 2025-09-17 00:51:07,447 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/256245946/issues/123/comments?page=2 HTTP/1.1" 200 None 2025-09-17 00:51:07,449 [ scc.repo] DEBUG ## Branches found: 2025-09-17 00:51:07,449 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr 2025-09-17 00:51:07,449 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:51:07,449 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:51:07,452 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-17 00:51:07,455 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-17 00:51:07,455 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-17 00:51:07,459 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-17 00:51:07,721 [ scc.git] DEBUG Updating 11d3587..f7eea7c 2025-09-17 00:51:08,108 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/179 HTTP/1.1" 200 None 2025-09-17 00:51:08,824 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/177 HTTP/1.1" 200 None 2025-09-17 00:51:09,497 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/175 HTTP/1.1" 200 None 2025-09-17 00:51:10,215 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/147 HTTP/1.1" 200 None 2025-09-17 00:51:10,878 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/173 HTTP/1.1" 200 None 2025-09-17 00:51:11,528 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/171 HTTP/1.1" 200 None 2025-09-17 00:51:12,244 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/168 HTTP/1.1" 200 None 2025-09-17 00:51:12,245 [ scc.git] DEBUG Calling 'git fetch origin pull/178/head' 2025-09-17 00:51:12,943 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr 2025-09-17 00:51:12,943 [ scc.git] DEBUG * branch refs/pull/178/head -> FETCH_HEAD 2025-09-17 00:51:12,948 [ scc.git] DEBUG Calling 'git fetch origin pull/180/head' 2025-09-17 00:51:13,433 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr 2025-09-17 00:51:13,433 [ scc.git] DEBUG * branch refs/pull/180/head -> FETCH_HEAD 2025-09-17 00:51:13,436 [ scc.git] DEBUG ## Unique users: [] 2025-09-17 00:51:13,436 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:51:13,436 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:51:13,438 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...bb180dbb97ddc67cd2cf655d56058ba7da765769' 2025-09-17 00:51:13,442 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:51:13,445 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 178 (Fix export of masks with multi-theC as multi-channel labels) bb180dbb97ddc67cd2cf655d56058ba7da765769' 2025-09-17 00:51:13,454 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-17 00:51:13,458 [ scc.git] DEBUG CHANGELOG.md | 4 ++-- 2025-09-17 00:51:13,458 [ scc.git] DEBUG src/omero_zarr/masks.py | 11 +++++------ 2025-09-17 00:51:13,458 [ scc.git] DEBUG test/integration/clitest/test_export.py | 32 ++++++++++++++++++-------------- 2025-09-17 00:51:13,458 [ scc.git] DEBUG 3 files changed, 25 insertions(+), 22 deletions(-) 2025-09-17 00:51:13,597 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:51:13,598 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...dbe12f4006b8d04d44b581b985571d4de378ab2b' 2025-09-17 00:51:13,602 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:51:13,604 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 180 (Import command) dbe12f4006b8d04d44b581b985571d4de378ab2b' 2025-09-17 00:51:13,616 [ scc.git] DEBUG Auto-merging src/omero_zarr/masks.py 2025-09-17 00:51:13,617 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-17 00:51:13,621 [ scc.git] DEBUG .isort.cfg | 2 +- 2025-09-17 00:51:13,621 [ scc.git] DEBUG README.rst | 32 +- 2025-09-17 00:51:13,621 [ scc.git] DEBUG src/omero_zarr/cli.py | 58 ++++ 2025-09-17 00:51:13,621 [ scc.git] DEBUG src/omero_zarr/import_xml.py | 146 ++++++++ 2025-09-17 00:51:13,621 [ scc.git] DEBUG src/omero_zarr/zarr_import.py | 586 ++++++++++++++++++++++++++++++++ 2025-09-17 00:51:13,621 [ scc.git] DEBUG test/integration/clitest/test_import.py | 166 +++++++++ 2025-09-17 00:51:13,621 [ scc.git] DEBUG 6 files changed, 982 insertions(+), 8 deletions(-) 2025-09-17 00:51:13,621 [ scc.git] DEBUG create mode 100644 src/omero_zarr/import_xml.py 2025-09-17 00:51:13,621 [ scc.git] DEBUG create mode 100644 src/omero_zarr/zarr_import.py 2025-09-17 00:51:13,621 [ scc.git] DEBUG create mode 100644 test/integration/clitest/test_import.py 2025-09-17 00:51:14,005 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:51:14,005 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-17 00:51:14,047 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:51:14,047 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:51:14,049 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-17 00:51:14,088 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-17 00:51:14,093 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7501c3a790> has no local changes 2025-09-17 00:51:14,093 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-cli-zarr Excluded PRs: - PR 174 will-moore 'Skip wells' (stage: draft) - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (exclude comment) - PR 170 will-moore 'Use ome zarr models py' (stage: draft) - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft) - PR 167 dominikl 'Add extinfo command' (stage: draft) - PR 166 will-moore 'Downsample scale option' (stage: draft) - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment) Updating 11d3587..f7eea7c Previously merged: - PR 179 will-moore 'Changelog 0.6.0' - PR 177 jburel 'Replace fromstring by frombuffer' - PR 175 will-moore 'Pin ome-zarr-py <0.12.0' - PR 147 will-moore 'Name option' - PR 173 will-moore 'Add test_export_plate_polygons()' - PR 171 will-moore 'Initial addition of integration tests' - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' - PR 180 will-moore 'Import command' Generated by OMERO-plugins-push#534 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/534/)' 2025-09-17 00:51:14,100 [ scc.git] DEBUG [detached HEAD e836a4c] merge master -Dorg -Ssuccess-only 2025-09-17 00:51:14,100 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:51:14,101 [ scc.repo] DEBUG ## PRs found: 2025-09-17 00:51:14,662 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls HTTP/1.1" 200 None 2025-09-17 00:51:15,137 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/642 HTTP/1.1" 200 None 2025-09-17 00:51:15,580 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/642/comments HTTP/1.1" 200 None 2025-09-17 00:51:15,581 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-17 00:51:16,139 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/1fe8ad313b090f3c1e95577a9e7a7248ea605fea HTTP/1.1" 200 None 2025-09-17 00:51:16,694 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/1fe8ad313b090f3c1e95577a9e7a7248ea605fea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:51:17,197 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/1fe8ad313b090f3c1e95577a9e7a7248ea605fea/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-17 00:51:17,746 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/1fe8ad313b090f3c1e95577a9e7a7248ea605fea HTTP/1.1" 200 None 2025-09-17 00:51:18,185 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/1fe8ad313b090f3c1e95577a9e7a7248ea605fea?per_page=1 HTTP/1.1" 200 2 2025-09-17 00:51:18,185 [ scc.repo] DEBUG - PR 642 dependabot[bot] 'Bump vite from 6.2.6 to 6.3.6' 2025-09-17 00:51:18,642 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/641 HTTP/1.1" 200 None 2025-09-17 00:51:19,111 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/641/comments HTTP/1.1" 200 None 2025-09-17 00:51:19,604 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/637 HTTP/1.1" 200 None 2025-09-17 00:51:20,087 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/637/comments HTTP/1.1" 200 None 2025-09-17 00:51:20,088 [ scc.repo] DEBUG # ... Include label: include 2025-09-17 00:51:20,644 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/ac58011fe3386095f2e637d128d293d573474a0c HTTP/1.1" 200 None 2025-09-17 00:51:21,109 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/ac58011fe3386095f2e637d128d293d573474a0c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:51:21,682 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/ac58011fe3386095f2e637d128d293d573474a0c HTTP/1.1" 200 None 2025-09-17 00:51:22,107 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/ac58011fe3386095f2e637d128d293d573474a0c?per_page=1 HTTP/1.1" 200 2 2025-09-17 00:51:22,107 [ scc.repo] DEBUG - PR 637 Rdornier 'Fix scalebar position' 2025-09-17 00:51:22,610 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/630 HTTP/1.1" 200 None 2025-09-17 00:51:23,101 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/630/comments HTTP/1.1" 200 None 2025-09-17 00:51:23,629 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/7a71d8f456b659444095e496a4c6d2449c306a29 HTTP/1.1" 200 None 2025-09-17 00:51:24,156 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/7a71d8f456b659444095e496a4c6d2449c306a29/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:51:24,659 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/7a71d8f456b659444095e496a4c6d2449c306a29/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-17 00:51:25,098 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/7a71d8f456b659444095e496a4c6d2449c306a29 HTTP/1.1" 200 None 2025-09-17 00:51:25,537 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/7a71d8f456b659444095e496a4c6d2449c306a29?per_page=1 HTTP/1.1" 200 2 2025-09-17 00:51:25,537 [ scc.repo] DEBUG - PR 630 will-moore 'Fix color and position for ALL new panel insets' 2025-09-17 00:51:25,987 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/619 HTTP/1.1" 200 None 2025-09-17 00:51:26,472 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/616 HTTP/1.1" 200 None 2025-09-17 00:51:26,942 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/616/comments HTTP/1.1" 200 None 2025-09-17 00:51:26,943 [ scc.repo] DEBUG # ... Include label: include 2025-09-17 00:51:27,458 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/4df87c2fb29b4cb28b030665a560ab13b0ce1fce HTTP/1.1" 200 None 2025-09-17 00:51:27,915 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/4df87c2fb29b4cb28b030665a560ab13b0ce1fce/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:51:28,462 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/4df87c2fb29b4cb28b030665a560ab13b0ce1fce HTTP/1.1" 200 None 2025-09-17 00:51:28,873 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/4df87c2fb29b4cb28b030665a560ab13b0ce1fce?per_page=1 HTTP/1.1" 200 2 2025-09-17 00:51:28,873 [ scc.repo] DEBUG - PR 616 Rdornier 'Fix labels around border' 2025-09-17 00:51:29,361 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/612 HTTP/1.1" 200 None 2025-09-17 00:51:29,811 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/612/comments HTTP/1.1" 200 None 2025-09-17 00:51:30,373 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/9ae98a37ea474db7d473b99abb884cd4b1fdfb36 HTTP/1.1" 200 None 2025-09-17 00:51:30,902 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/9ae98a37ea474db7d473b99abb884cd4b1fdfb36/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:51:31,373 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/9ae98a37ea474db7d473b99abb884cd4b1fdfb36/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-17 00:51:31,880 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/9ae98a37ea474db7d473b99abb884cd4b1fdfb36 HTTP/1.1" 200 None 2025-09-17 00:51:32,290 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/9ae98a37ea474db7d473b99abb884cd4b1fdfb36?per_page=1 HTTP/1.1" 200 2 2025-09-17 00:51:32,291 [ scc.repo] DEBUG - PR 612 will-moore 'Script version' 2025-09-17 00:51:32,772 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/610 HTTP/1.1" 200 None 2025-09-17 00:51:33,211 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/610/comments HTTP/1.1" 200 None 2025-09-17 00:51:33,733 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/59ca9bf79effaded86845d8c49fb94bda6727333 HTTP/1.1" 200 None 2025-09-17 00:51:34,247 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/59ca9bf79effaded86845d8c49fb94bda6727333/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:51:34,754 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/59ca9bf79effaded86845d8c49fb94bda6727333/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-17 00:51:35,270 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/59ca9bf79effaded86845d8c49fb94bda6727333 HTTP/1.1" 200 None 2025-09-17 00:51:35,772 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/59ca9bf79effaded86845d8c49fb94bda6727333?per_page=1 HTTP/1.1" 200 2 2025-09-17 00:51:35,772 [ scc.repo] DEBUG - PR 610 will-moore 'Add docs/contributing.rst' 2025-09-17 00:51:36,240 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/600 HTTP/1.1" 200 None 2025-09-17 00:51:36,735 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/600/comments HTTP/1.1" 200 None 2025-09-17 00:51:36,737 [ scc.repo] DEBUG # ... Include label: include 2025-09-17 00:51:37,431 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/e6b77832b4c3dcec62c662935e9d79cd0619f780 HTTP/1.1" 200 None 2025-09-17 00:51:37,890 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/e6b77832b4c3dcec62c662935e9d79cd0619f780/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:51:38,351 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/e6b77832b4c3dcec62c662935e9d79cd0619f780 HTTP/1.1" 200 None 2025-09-17 00:51:38,770 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/e6b77832b4c3dcec62c662935e9d79cd0619f780?per_page=1 HTTP/1.1" 200 2 2025-09-17 00:51:38,770 [ scc.repo] DEBUG - PR 600 Rdornier 'Label on rois' 2025-09-17 00:51:38,770 [ scc.repo] DEBUG ## Branches found: 2025-09-17 00:51:38,770 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure 2025-09-17 00:51:38,771 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:51:38,771 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:51:38,774 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-17 00:51:38,776 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-17 00:51:38,777 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-17 00:51:38,781 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-17 00:51:38,803 [ scc.git] DEBUG Updating 9cc36cde..66607c99 2025-09-17 00:51:39,512 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/605 HTTP/1.1" 200 None 2025-09-17 00:51:40,252 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/638 HTTP/1.1" 200 None 2025-09-17 00:51:40,864 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/633 HTTP/1.1" 200 None 2025-09-17 00:51:41,525 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/635 HTTP/1.1" 200 None 2025-09-17 00:51:42,169 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/623 HTTP/1.1" 200 None 2025-09-17 00:51:42,814 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/631 HTTP/1.1" 200 None 2025-09-17 00:51:42,816 [ scc.git] DEBUG Calling 'git fetch origin pull/600/head' 2025-09-17 00:51:43,425 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2025-09-17 00:51:43,425 [ scc.git] DEBUG * branch refs/pull/600/head -> FETCH_HEAD 2025-09-17 00:51:43,430 [ scc.git] DEBUG Calling 'git fetch origin pull/610/head' 2025-09-17 00:51:44,318 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2025-09-17 00:51:44,318 [ scc.git] DEBUG * branch refs/pull/610/head -> FETCH_HEAD 2025-09-17 00:51:44,323 [ scc.git] DEBUG Calling 'git fetch origin pull/612/head' 2025-09-17 00:51:45,837 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2025-09-17 00:51:45,837 [ scc.git] DEBUG * branch refs/pull/612/head -> FETCH_HEAD 2025-09-17 00:51:45,843 [ scc.git] DEBUG Calling 'git fetch origin pull/616/head' 2025-09-17 00:51:47,769 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2025-09-17 00:51:47,769 [ scc.git] DEBUG * branch refs/pull/616/head -> FETCH_HEAD 2025-09-17 00:51:47,775 [ scc.git] DEBUG Calling 'git fetch origin pull/630/head' 2025-09-17 00:51:48,254 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2025-09-17 00:51:48,254 [ scc.git] DEBUG * branch refs/pull/630/head -> FETCH_HEAD 2025-09-17 00:51:48,260 [ scc.git] DEBUG Calling 'git fetch origin pull/637/head' 2025-09-17 00:51:48,553 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2025-09-17 00:51:48,554 [ scc.git] DEBUG * branch refs/pull/637/head -> FETCH_HEAD 2025-09-17 00:51:48,559 [ scc.git] DEBUG Calling 'git fetch origin pull/642/head' 2025-09-17 00:51:48,837 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2025-09-17 00:51:48,837 [ scc.git] DEBUG * branch refs/pull/642/head -> FETCH_HEAD 2025-09-17 00:51:48,842 [ scc.git] DEBUG ## Unique users: [] 2025-09-17 00:51:48,842 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:51:48,842 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:51:48,845 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...e6b77832b4c3dcec62c662935e9d79cd0619f780' 2025-09-17 00:51:48,852 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:51:48,855 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 600 (Label on rois) e6b77832b4c3dcec62c662935e9d79cd0619f780' 2025-09-17 00:51:48,875 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-17 00:51:48,886 [ scc.git] DEBUG .gitignore | 2 + 2025-09-17 00:51:48,886 [ scc.git] DEBUG .../scripts/omero/figure_scripts/Figure_To_Pdf.py | 274 +++++++- 2025-09-17 00:51:48,886 [ scc.git] DEBUG src/css/figure.css | 18 +- 2025-09-17 00:51:48,886 [ scc.git] DEBUG src/images/text-icon-24.png | Bin 0 -> 2477 bytes 2025-09-17 00:51:48,886 [ scc.git] DEBUG src/index.html | 34 +- 2025-09-17 00:51:48,886 [ scc.git] DEBUG src/js/models/panel_model.js | 69 +- 2025-09-17 00:51:48,886 [ scc.git] DEBUG src/js/shapeEditorTest.js | 29 +- 2025-09-17 00:51:48,886 [ scc.git] DEBUG src/js/shape_editor/ellipse.js | 208 +++++- 2025-09-17 00:51:48,886 [ scc.git] DEBUG src/js/shape_editor/line.js | 215 +++++- 2025-09-17 00:51:48,886 [ scc.git] DEBUG src/js/shape_editor/point.js | 203 +++++- 2025-09-17 00:51:48,886 [ scc.git] DEBUG src/js/shape_editor/polygon.js | 207 +++++- 2025-09-17 00:51:48,886 [ scc.git] DEBUG src/js/shape_editor/rect.js | 212 +++++- 2025-09-17 00:51:48,886 [ scc.git] DEBUG src/js/shape_editor/shape_manager.js | 411 ++++++++++- 2025-09-17 00:51:48,886 [ scc.git] DEBUG src/js/shape_editor/text.js | 754 +++++++++++++++++++++ 2025-09-17 00:51:48,886 [ scc.git] DEBUG src/js/views/panel_view.js | 2 +- 2025-09-17 00:51:48,886 [ scc.git] DEBUG src/js/views/right_panel_view.js | 121 +++- 2025-09-17 00:51:48,887 [ scc.git] DEBUG src/js/views/roi_loader_view.js | 57 +- 2025-09-17 00:51:48,887 [ scc.git] DEBUG src/js/views/roi_modal_view.js | 182 ++++- 2025-09-17 00:51:48,887 [ scc.git] DEBUG src/shapeEditorTest.html | 37 +- 2025-09-17 00:51:48,887 [ scc.git] DEBUG src/templates/scalebar_form.template.html | 4 +- 2025-09-17 00:51:48,887 [ scc.git] DEBUG src/templates/shapes/shape_sidebar.template.html | 51 ++ 2025-09-17 00:51:48,888 [ scc.git] DEBUG src/templates/shapes/shape_toolbar.template.html | 382 +++++++---- 2025-09-17 00:51:48,888 [ scc.git] DEBUG 22 files changed, 3248 insertions(+), 224 deletions(-) 2025-09-17 00:51:48,888 [ scc.git] DEBUG create mode 100644 src/images/text-icon-24.png 2025-09-17 00:51:48,888 [ scc.git] DEBUG create mode 100644 src/js/shape_editor/text.js 2025-09-17 00:51:48,888 [ scc.git] DEBUG create mode 100644 src/templates/shapes/shape_sidebar.template.html 2025-09-17 00:51:49,023 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:51:49,023 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...59ca9bf79effaded86845d8c49fb94bda6727333' 2025-09-17 00:51:49,031 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:51:49,033 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 610 (Add docs/contributing.rst) 59ca9bf79effaded86845d8c49fb94bda6727333' 2025-09-17 00:51:49,076 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-17 00:51:49,080 [ scc.git] DEBUG .github/PULL_REQUEST_TEMPLATE.md | 5 +++ 2025-09-17 00:51:49,080 [ scc.git] DEBUG README.rst | 4 +- 2025-09-17 00:51:49,080 [ scc.git] DEBUG docs/contributing.md | 89 ++++++++++++++++++++++++++++++++++++++++ 2025-09-17 00:51:49,080 [ scc.git] DEBUG 3 files changed, 97 insertions(+), 1 deletion(-) 2025-09-17 00:51:49,080 [ scc.git] DEBUG create mode 100644 .github/PULL_REQUEST_TEMPLATE.md 2025-09-17 00:51:49,080 [ scc.git] DEBUG create mode 100644 docs/contributing.md 2025-09-17 00:51:49,408 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:51:49,408 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...9ae98a37ea474db7d473b99abb884cd4b1fdfb36' 2025-09-17 00:51:49,417 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:51:49,419 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 612 (Script version) 9ae98a37ea474db7d473b99abb884cd4b1fdfb36' 2025-09-17 00:51:49,872 [ scc.git] DEBUG Auto-merging omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 2025-09-17 00:51:49,872 [ scc.git] DEBUG Auto-merging package-lock.json 2025-09-17 00:51:49,872 [ scc.git] DEBUG Auto-merging package.json 2025-09-17 00:51:49,872 [ scc.git] DEBUG Auto-merging src/css/figure.css 2025-09-17 00:51:49,872 [ scc.git] DEBUG Auto-merging src/index.html 2025-09-17 00:51:49,873 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-17 00:51:49,880 [ scc.git] DEBUG .bumpversion.cfg | 2 + 2025-09-17 00:51:49,881 [ scc.git] DEBUG .../scripts/omero/figure_scripts/Figure_To_Pdf.py | 7 +- 2025-09-17 00:51:49,881 [ scc.git] DEBUG omero_figure/urls.py | 3 + 2025-09-17 00:51:49,881 [ scc.git] DEBUG omero_figure/views.py | 54 ++++++++++++++ 2025-09-17 00:51:49,881 [ scc.git] DEBUG package-lock.json | 8 +- 2025-09-17 00:51:49,881 [ scc.git] DEBUG package.json | 3 +- 2025-09-17 00:51:49,881 [ scc.git] DEBUG src/css/figure.css | 2 +- 2025-09-17 00:51:49,881 [ scc.git] DEBUG src/html/dialogs/scriptManagerDialog.html | 86 ++++++++++++++++++++++ 2025-09-17 00:51:49,881 [ scc.git] DEBUG src/index.html | 20 +++-- 2025-09-17 00:51:49,881 [ scc.git] DEBUG src/js/views/figure_view.js | 54 ++++++++++++++ 2025-09-17 00:51:49,881 [ scc.git] DEBUG vite.config.js | 3 + 2025-09-17 00:51:49,881 [ scc.git] DEBUG 11 files changed, 230 insertions(+), 12 deletions(-) 2025-09-17 00:51:49,881 [ scc.git] DEBUG create mode 100644 src/html/dialogs/scriptManagerDialog.html 2025-09-17 00:51:50,043 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:51:50,044 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...4df87c2fb29b4cb28b030665a560ab13b0ce1fce' 2025-09-17 00:51:50,052 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:51:50,054 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 616 (Fix labels around border) 4df87c2fb29b4cb28b030665a560ab13b0ce1fce' 2025-09-17 00:51:50,224 [ scc.git] DEBUG Auto-merging omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 2025-09-17 00:51:50,224 [ scc.git] DEBUG Auto-merging src/js/models/panel_model.js 2025-09-17 00:51:50,224 [ scc.git] DEBUG Auto-merging src/js/views/figure_view.js 2025-09-17 00:51:50,224 [ scc.git] DEBUG Auto-merging src/js/views/panel_view.js 2025-09-17 00:51:50,225 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-17 00:51:50,231 [ scc.git] DEBUG .../scripts/omero/figure_scripts/Figure_To_Pdf.py | 22 ++++++++++++++-------- 2025-09-17 00:51:50,231 [ scc.git] DEBUG src/js/models/panel_model.js | 16 ++++++++++++++++ 2025-09-17 00:51:50,231 [ scc.git] DEBUG src/js/views/figure_view.js | 4 +++- 2025-09-17 00:51:50,231 [ scc.git] DEBUG src/js/views/panel_view.js | 21 +++++++++------------ 2025-09-17 00:51:50,231 [ scc.git] DEBUG 4 files changed, 42 insertions(+), 21 deletions(-) 2025-09-17 00:51:50,462 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:51:50,462 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...7a71d8f456b659444095e496a4c6d2449c306a29' 2025-09-17 00:51:50,471 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:51:50,474 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 630 (Fix color and position for ALL new panel insets) 7a71d8f456b659444095e496a4c6d2449c306a29' 2025-09-17 00:51:50,608 [ scc.git] DEBUG Auto-merging src/js/views/right_panel_view.js 2025-09-17 00:51:50,608 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/js/views/right_panel_view.js 2025-09-17 00:51:50,609 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-09-17 00:51:50,609 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-09-17 00:51:50,614 [ scc.git] DEBUG Calling 'git reset --hard ec77c04a3e36108dbaed4ceeb13561ed5a14a04c' 2025-09-17 00:51:50,622 [ scc.git] DEBUG HEAD is now at ec77c04a merge master -Dorg -Ssuccess-only: PR 616 (Fix labels around border) 2025-09-17 00:51:50,855 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:51:50,856 [ scc.git] DEBUG Calling 'git merge-base 66607c99ef10bf7997fe30f3813c6f90c401783a 7a71d8f456b659444095e496a4c6d2449c306a29' 2025-09-17 00:51:50,862 [ scc.git] DEBUG Calling 'git diff --name-only 9cc36cde05bde4def7b62b07c2e9ae5f66712e96..66607c99ef10bf7997fe30f3813c6f90c401783a' 2025-09-17 00:51:50,866 [ scc.git] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets' Conflicting PR. Removed from build [OMERO-plugins-push#534](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/534/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/534/consoleText) for more details. Possible conflicts: - PR #600 Rdornier 'Label on rois' - src/js/views/right_panel_view.js - Upstream changes - src/js/views/right_panel_view.js --conflicts 2025-09-17 00:51:50,868 [ scc.config] DEBUG Found github.token 2025-09-17 00:51:50,868 [ scc.git] DEBUG Not adding comment to issue #630, already --conflicts. 2025-09-17 00:51:50,868 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...ac58011fe3386095f2e637d128d293d573474a0c' 2025-09-17 00:51:50,876 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:51:50,878 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 637 (Fix scalebar position) ac58011fe3386095f2e637d128d293d573474a0c' 2025-09-17 00:51:51,209 [ scc.git] DEBUG Auto-merging omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 2025-09-17 00:51:51,209 [ scc.git] DEBUG Auto-merging src/css/figure.css 2025-09-17 00:51:51,209 [ scc.git] DEBUG Auto-merging src/js/views/panel_view.js 2025-09-17 00:51:51,209 [ scc.git] DEBUG Auto-merging src/templates/scalebar_form.template.html 2025-09-17 00:51:51,209 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/templates/scalebar_form.template.html 2025-09-17 00:51:51,209 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-09-17 00:51:51,210 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-09-17 00:51:51,214 [ scc.git] DEBUG Calling 'git reset --hard ec77c04a3e36108dbaed4ceeb13561ed5a14a04c' 2025-09-17 00:51:51,222 [ scc.git] DEBUG HEAD is now at ec77c04a merge master -Dorg -Ssuccess-only: PR 616 (Fix labels around border) 2025-09-17 00:51:51,370 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:51:51,370 [ scc.git] DEBUG Calling 'git merge-base 66607c99ef10bf7997fe30f3813c6f90c401783a ac58011fe3386095f2e637d128d293d573474a0c' 2025-09-17 00:51:51,374 [ scc.git] DEBUG Calling 'git diff --name-only 66607c99ef10bf7997fe30f3813c6f90c401783a..66607c99ef10bf7997fe30f3813c6f90c401783a' 2025-09-17 00:51:51,377 [ scc.git] INFO - PR 637 Rdornier 'Fix scalebar position' Conflicting PR. Removed from build [OMERO-plugins-push#534](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/534/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/534/consoleText) for more details. Possible conflicts: - PR #600 Rdornier 'Label on rois' - src/templates/scalebar_form.template.html --conflicts 2025-09-17 00:51:51,379 [ scc.config] DEBUG Found github.token 2025-09-17 00:51:51,379 [ scc.git] DEBUG Not adding comment to issue #637, already --conflicts. 2025-09-17 00:51:51,379 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1fe8ad313b090f3c1e95577a9e7a7248ea605fea' 2025-09-17 00:51:51,392 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:51:51,394 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 642 (Bump vite from 6.2.6 to 6.3.6) 1fe8ad313b090f3c1e95577a9e7a7248ea605fea' 2025-09-17 00:51:51,538 [ scc.git] DEBUG Auto-merging package-lock.json 2025-09-17 00:51:51,538 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2025-09-17 00:51:51,538 [ scc.git] DEBUG Auto-merging package.json 2025-09-17 00:51:51,538 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-09-17 00:51:51,539 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-09-17 00:51:51,543 [ scc.git] DEBUG Calling 'git reset --hard ec77c04a3e36108dbaed4ceeb13561ed5a14a04c' 2025-09-17 00:51:51,552 [ scc.git] DEBUG HEAD is now at ec77c04a merge master -Dorg -Ssuccess-only: PR 616 (Fix labels around border) 2025-09-17 00:51:51,776 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:51:51,777 [ scc.git] DEBUG Calling 'git merge-base 66607c99ef10bf7997fe30f3813c6f90c401783a 1fe8ad313b090f3c1e95577a9e7a7248ea605fea' 2025-09-17 00:51:51,783 [ scc.git] DEBUG Calling 'git diff --name-only d2c6f5bc061df1e02422728732b07ae7a929ccb2..66607c99ef10bf7997fe30f3813c6f90c401783a' 2025-09-17 00:51:51,787 [ scc.git] INFO - PR 642 dependabot[bot] 'Bump vite from 6.2.6 to 6.3.6' Conflicting PR. Removed from build [OMERO-plugins-push#534](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/534/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/534/consoleText) for more details. Possible conflicts: - PR #612 will-moore 'Script version' - package-lock.json --conflicts 2025-09-17 00:51:51,789 [ scc.config] DEBUG Found github.token 2025-09-17 00:51:51,789 [ scc.git] DEBUG Not adding comment to issue #642, already --conflicts. 2025-09-17 00:51:51,789 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-17 00:51:51,829 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:51:51,829 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:51:51,831 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-17 00:51:51,871 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-17 00:51:51,878 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7501d404d0> has no local changes 2025-09-17 00:51:51,878 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-figure Excluded PRs: - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier) - PR 619 will-moore 'OME-Zarr support' (stage: draft) - PR 543 will-moore 'Plate well labels' (exclude comment) Updating 9cc36cde..66607c99 Previously merged: - PR 605 Tom-TBT 'Colorbar feature' - PR 638 Rdornier 'Fix arrow opacity' - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4' - PR 635 dependabot[bot] 'Bump esbuild and vite' - PR 623 will-moore 'Fix wrapping of label X button. see issues/622' - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 600 Rdornier 'Label on rois' - PR 610 will-moore 'Add docs/contributing.rst' - PR 612 will-moore 'Script version' - PR 616 Rdornier 'Fix labels around border' Conflicting PRs (not included): - PR 630 will-moore 'Fix color and position for ALL new panel insets' - PR 637 Rdornier 'Fix scalebar position' - PR 642 dependabot[bot] 'Bump vite from 6.2.6 to 6.3.6' Generated by OMERO-plugins-push#534 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/534/)' 2025-09-17 00:51:51,889 [ scc.git] DEBUG [detached HEAD d5618533] merge master -Dorg -Ssuccess-only 2025-09-17 00:51:51,889 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:51:51,889 [ scc.repo] DEBUG ## PRs found: 2025-09-17 00:51:52,296 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/pulls HTTP/1.1" 200 None 2025-09-17 00:51:52,829 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/31 HTTP/1.1" 200 None 2025-09-17 00:51:52,830 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-17 00:51:53,403 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c HTTP/1.1" 200 None 2025-09-17 00:51:53,910 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:51:54,422 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-17 00:51:54,986 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c HTTP/1.1" 200 None 2025-09-17 00:51:55,403 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/statuses/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c?per_page=1 HTTP/1.1" 200 2 2025-09-17 00:51:55,404 [ scc.repo] DEBUG - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-17 00:51:55,866 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/18 HTTP/1.1" 200 None 2025-09-17 00:51:56,305 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/18/comments HTTP/1.1" 200 None 2025-09-17 00:51:56,841 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337 HTTP/1.1" 200 None 2025-09-17 00:51:57,294 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:51:57,733 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337 HTTP/1.1" 200 None 2025-09-17 00:51:58,153 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/statuses/45aed4d15501fa5a524a8b500af8d426f0f6b337?per_page=1 HTTP/1.1" 200 2 2025-09-17 00:51:58,153 [ scc.repo] DEBUG - PR 18 jburel 'default size z value' 2025-09-17 00:51:58,154 [ scc.repo] DEBUG ## Branches found: 2025-09-17 00:51:58,154 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage 2025-09-17 00:51:58,154 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:51:58,154 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:51:58,157 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-17 00:51:58,159 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-17 00:51:58,159 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-17 00:51:58,162 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-17 00:51:58,166 [ scc.git] DEBUG Already up to date. 2025-09-17 00:51:58,166 [ scc.git] DEBUG Calling 'git fetch origin pull/18/head' 2025-09-17 00:51:58,530 [ scc.git] DEBUG From https://github.com/ome/omero-fpbioimage 2025-09-17 00:51:58,530 [ scc.git] DEBUG * branch refs/pull/18/head -> FETCH_HEAD 2025-09-17 00:51:58,535 [ scc.git] DEBUG Calling 'git fetch origin pull/31/head' 2025-09-17 00:51:58,822 [ scc.git] DEBUG From https://github.com/ome/omero-fpbioimage 2025-09-17 00:51:58,822 [ scc.git] DEBUG * branch refs/pull/31/head -> FETCH_HEAD 2025-09-17 00:51:58,826 [ scc.git] DEBUG ## Unique users: [] 2025-09-17 00:51:58,826 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:51:58,826 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:51:58,829 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45aed4d15501fa5a524a8b500af8d426f0f6b337' 2025-09-17 00:51:58,833 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:51:58,835 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 18 (default size z value) 45aed4d15501fa5a524a8b500af8d426f0f6b337' 2025-09-17 00:51:58,946 [ scc.git] DEBUG Auto-merging omero_fpbioimage/views.py 2025-09-17 00:51:58,947 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-17 00:51:58,950 [ scc.git] DEBUG omero_fpbioimage/views.py | 2 ++ 2025-09-17 00:51:58,950 [ scc.git] DEBUG 1 file changed, 2 insertions(+) 2025-09-17 00:51:59,102 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:51:59,102 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c' 2025-09-17 00:51:59,127 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:51:59,129 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 31 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c' 2025-09-17 00:51:59,138 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-17 00:51:59,141 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-09-17 00:51:59,141 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-09-17 00:51:59,505 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:51:59,505 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-17 00:51:59,546 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:51:59,546 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:51:59,548 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-17 00:51:59,586 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-17 00:51:59,590 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7500af7350> has no local changes 2025-09-17 00:51:59,590 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-fpbioimage Already up to date. Merged PRs: - PR 18 jburel 'default size z value' - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#534 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/534/)' 2025-09-17 00:51:59,596 [ scc.git] DEBUG [detached HEAD f0a8192] merge master -Dorg -Ssuccess-only 2025-09-17 00:51:59,596 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:51:59,597 [ scc.repo] DEBUG ## PRs found: 2025-09-17 00:52:00,025 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/pulls HTTP/1.1" 200 None 2025-09-17 00:52:00,501 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/119 HTTP/1.1" 200 None 2025-09-17 00:52:01,010 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/119/comments HTTP/1.1" 200 None 2025-09-17 00:52:01,476 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/9042541/issues/119/comments?page=2 HTTP/1.1" 200 None 2025-09-17 00:52:01,477 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-17 00:52:02,072 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062 HTTP/1.1" 200 None 2025-09-17 00:52:02,574 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:52:03,072 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-17 00:52:03,641 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062 HTTP/1.1" 200 None 2025-09-17 00:52:04,062 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/00257fc993a12b3f78a45db039e7bf2c8a406062?per_page=1 HTTP/1.1" 200 2 2025-09-17 00:52:04,063 [ scc.repo] DEBUG - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' 2025-09-17 00:52:04,550 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/118 HTTP/1.1" 200 None 2025-09-17 00:52:05,045 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/118/comments HTTP/1.1" 200 None 2025-09-17 00:52:05,498 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/9042541/issues/118/comments?page=2 HTTP/1.1" 200 None 2025-09-17 00:52:05,499 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-17 00:52:06,065 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d HTTP/1.1" 200 None 2025-09-17 00:52:06,567 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:52:07,038 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-17 00:52:07,609 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d HTTP/1.1" 200 None 2025-09-17 00:52:08,015 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/2bf34ddacb511c52e473a104fe2a1c00204bae1d?per_page=1 HTTP/1.1" 200 2 2025-09-17 00:52:08,016 [ scc.repo] DEBUG - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' 2025-09-17 00:52:08,494 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/117 HTTP/1.1" 200 None 2025-09-17 00:52:08,495 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-17 00:52:09,052 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c HTTP/1.1" 200 None 2025-09-17 00:52:09,544 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:52:10,063 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-17 00:52:10,523 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c HTTP/1.1" 200 None 2025-09-17 00:52:10,941 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/155d7ddab4f04c4a91bffc5736ba0741003c566c?per_page=1 HTTP/1.1" 200 2 2025-09-17 00:52:10,942 [ scc.repo] DEBUG - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' 2025-09-17 00:52:11,421 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/116 HTTP/1.1" 200 None 2025-09-17 00:52:11,422 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-17 00:52:11,996 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d HTTP/1.1" 200 None 2025-09-17 00:52:12,558 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:52:13,058 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-17 00:52:13,627 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d HTTP/1.1" 200 None 2025-09-17 00:52:14,051 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d?per_page=1 HTTP/1.1" 200 2 2025-09-17 00:52:14,051 [ scc.repo] DEBUG - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' 2025-09-17 00:52:14,562 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/115 HTTP/1.1" 200 None 2025-09-17 00:52:15,005 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/115/comments HTTP/1.1" 200 None 2025-09-17 00:52:15,005 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-17 00:52:15,576 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5 HTTP/1.1" 200 None 2025-09-17 00:52:16,118 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:52:16,624 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-17 00:52:17,171 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5 HTTP/1.1" 200 None 2025-09-17 00:52:17,592 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/25020d66a7df4ec3cad5967706bb7d13b1493bb5?per_page=1 HTTP/1.1" 200 2 2025-09-17 00:52:17,592 [ scc.repo] DEBUG - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' 2025-09-17 00:52:18,105 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/114 HTTP/1.1" 200 None 2025-09-17 00:52:18,106 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-17 00:52:18,695 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b HTTP/1.1" 200 None 2025-09-17 00:52:19,189 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:52:19,709 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-17 00:52:20,276 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b HTTP/1.1" 200 None 2025-09-17 00:52:20,693 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/cf75d259b2882000d6be73bc1c11c99c27aa439b?per_page=1 HTTP/1.1" 200 2 2025-09-17 00:52:20,693 [ scc.repo] DEBUG - PR 114 dependabot[bot] 'Bump tar and fsevents' 2025-09-17 00:52:21,170 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/113 HTTP/1.1" 200 None 2025-09-17 00:52:21,171 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-17 00:52:21,699 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e HTTP/1.1" 200 None 2025-09-17 00:52:22,182 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:52:22,738 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-17 00:52:23,321 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e HTTP/1.1" 200 None 2025-09-17 00:52:23,739 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/6a657d7a4e0bbfaa3464e851023f29c63db15d4e?per_page=1 HTTP/1.1" 200 2 2025-09-17 00:52:23,740 [ scc.repo] DEBUG - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' 2025-09-17 00:52:23,740 [ scc.repo] DEBUG ## Branches found: 2025-09-17 00:52:23,740 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery 2025-09-17 00:52:23,740 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:52:23,740 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:52:23,743 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-17 00:52:23,746 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-17 00:52:23,746 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-17 00:52:23,749 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-17 00:52:23,752 [ scc.git] DEBUG Already up to date. 2025-09-17 00:52:23,752 [ scc.git] DEBUG Calling 'git fetch origin pull/113/head' 2025-09-17 00:52:24,029 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2025-09-17 00:52:24,029 [ scc.git] DEBUG * branch refs/pull/113/head -> FETCH_HEAD 2025-09-17 00:52:24,034 [ scc.git] DEBUG Calling 'git fetch origin pull/114/head' 2025-09-17 00:52:24,309 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2025-09-17 00:52:24,309 [ scc.git] DEBUG * branch refs/pull/114/head -> FETCH_HEAD 2025-09-17 00:52:24,313 [ scc.git] DEBUG Calling 'git fetch origin pull/115/head' 2025-09-17 00:52:24,590 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2025-09-17 00:52:24,590 [ scc.git] DEBUG * branch refs/pull/115/head -> FETCH_HEAD 2025-09-17 00:52:24,595 [ scc.git] DEBUG Calling 'git fetch origin pull/116/head' 2025-09-17 00:52:24,880 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2025-09-17 00:52:24,880 [ scc.git] DEBUG * branch refs/pull/116/head -> FETCH_HEAD 2025-09-17 00:52:24,884 [ scc.git] DEBUG Calling 'git fetch origin pull/117/head' 2025-09-17 00:52:25,169 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2025-09-17 00:52:25,169 [ scc.git] DEBUG * branch refs/pull/117/head -> FETCH_HEAD 2025-09-17 00:52:25,173 [ scc.git] DEBUG Calling 'git fetch origin pull/118/head' 2025-09-17 00:52:25,452 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2025-09-17 00:52:25,452 [ scc.git] DEBUG * branch refs/pull/118/head -> FETCH_HEAD 2025-09-17 00:52:25,458 [ scc.git] DEBUG Calling 'git fetch origin pull/119/head' 2025-09-17 00:52:25,735 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2025-09-17 00:52:25,735 [ scc.git] DEBUG * branch refs/pull/119/head -> FETCH_HEAD 2025-09-17 00:52:25,739 [ scc.git] DEBUG ## Unique users: [] 2025-09-17 00:52:25,739 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:52:25,739 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:52:25,742 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6a657d7a4e0bbfaa3464e851023f29c63db15d4e' 2025-09-17 00:52:25,804 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:52:25,806 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 113 (Bump elliptic from 6.5.4 to 6.6.1) 6a657d7a4e0bbfaa3464e851023f29c63db15d4e' 2025-09-17 00:52:25,866 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-17 00:52:25,872 [ scc.git] DEBUG package-lock.json | 12 ++++++------ 2025-09-17 00:52:25,872 [ scc.git] DEBUG 1 file changed, 6 insertions(+), 6 deletions(-) 2025-09-17 00:52:26,022 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:52:26,022 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...cf75d259b2882000d6be73bc1c11c99c27aa439b' 2025-09-17 00:52:26,110 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:52:26,113 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 114 (Bump tar and fsevents) cf75d259b2882000d6be73bc1c11c99c27aa439b' 2025-09-17 00:52:26,291 [ scc.git] DEBUG Auto-merging package-lock.json 2025-09-17 00:52:26,292 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-17 00:52:26,297 [ scc.git] DEBUG package-lock.json | 625 +++--------------------------------------------------- 2025-09-17 00:52:26,297 [ scc.git] DEBUG 1 file changed, 29 insertions(+), 596 deletions(-) 2025-09-17 00:52:26,437 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:52:26,437 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25020d66a7df4ec3cad5967706bb7d13b1493bb5' 2025-09-17 00:52:26,441 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:52:26,443 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 115 (Bump micromatch, webpack-cli and webpack) 25020d66a7df4ec3cad5967706bb7d13b1493bb5' 2025-09-17 00:52:26,607 [ scc.git] DEBUG Auto-merging package-lock.json 2025-09-17 00:52:26,608 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2025-09-17 00:52:26,608 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-09-17 00:52:26,608 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-09-17 00:52:26,611 [ scc.git] DEBUG Calling 'git reset --hard b463739b6812801c8942b38e1ec489c7a6513f8e' 2025-09-17 00:52:26,616 [ scc.git] DEBUG HEAD is now at b463739 merge master -Dorg -Ssuccess-only: PR 114 (Bump tar and fsevents) 2025-09-17 00:52:26,822 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:52:26,823 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 25020d66a7df4ec3cad5967706bb7d13b1493bb5' 2025-09-17 00:52:26,826 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd' 2025-09-17 00:52:26,829 [ scc.git] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' Conflicting PR. Removed from build [OMERO-plugins-push#534](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/534/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/534/consoleText) for more details. Possible conflicts: - PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - package-lock.json - PR #114 dependabot[bot] 'Bump tar and fsevents' - package-lock.json --conflicts 2025-09-17 00:52:26,831 [ scc.config] DEBUG Found github.token 2025-09-17 00:52:26,831 [ scc.git] DEBUG Not adding comment to issue #115, already --conflicts. 2025-09-17 00:52:26,831 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d' 2025-09-17 00:52:26,881 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:52:26,883 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 116 (Bump browserify-sign from 4.0.4 to 4.2.3) 42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d' 2025-09-17 00:52:27,031 [ scc.git] DEBUG Auto-merging package-lock.json 2025-09-17 00:52:27,032 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-17 00:52:27,037 [ scc.git] DEBUG package-lock.json | 119 +++++++++++++++++++++++++++++++++++++++++++++++++----- 2025-09-17 00:52:27,037 [ scc.git] DEBUG 1 file changed, 108 insertions(+), 11 deletions(-) 2025-09-17 00:52:27,218 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:52:27,219 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...155d7ddab4f04c4a91bffc5736ba0741003c566c' 2025-09-17 00:52:27,233 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:52:27,235 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6) 155d7ddab4f04c4a91bffc5736ba0741003c566c' 2025-09-17 00:52:27,261 [ scc.git] DEBUG Auto-merging package-lock.json 2025-09-17 00:52:27,262 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-17 00:52:27,266 [ scc.git] DEBUG package-lock.json | 6 +++--- 2025-09-17 00:52:27,267 [ scc.git] DEBUG 1 file changed, 3 insertions(+), 3 deletions(-) 2025-09-17 00:52:27,614 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:52:27,615 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2bf34ddacb511c52e473a104fe2a1c00204bae1d' 2025-09-17 00:52:27,619 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:52:27,621 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 118 (Bump braces, webpack-cli and webpack) 2bf34ddacb511c52e473a104fe2a1c00204bae1d' 2025-09-17 00:52:27,733 [ scc.git] DEBUG Auto-merging package-lock.json 2025-09-17 00:52:27,733 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2025-09-17 00:52:27,734 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-09-17 00:52:27,734 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-09-17 00:52:27,737 [ scc.git] DEBUG Calling 'git reset --hard 89c511a716698737e79c9e496a931de5f27d9e7d' 2025-09-17 00:52:27,742 [ scc.git] DEBUG HEAD is now at 89c511a merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6) 2025-09-17 00:52:28,017 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:52:28,018 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 2bf34ddacb511c52e473a104fe2a1c00204bae1d' 2025-09-17 00:52:28,021 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd' 2025-09-17 00:52:28,024 [ scc.git] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' Conflicting PR. Removed from build [OMERO-plugins-push#534](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/534/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/534/consoleText) for more details. Possible conflicts: - PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - package-lock.json - PR #114 dependabot[bot] 'Bump tar and fsevents' - package-lock.json - PR #115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - package-lock.json - PR #116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - package-lock.json - PR #117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' - package-lock.json --conflicts 2025-09-17 00:52:28,026 [ scc.config] DEBUG Found github.token 2025-09-17 00:52:28,026 [ scc.git] DEBUG Not adding comment to issue #118, already --conflicts. 2025-09-17 00:52:28,026 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...00257fc993a12b3f78a45db039e7bf2c8a406062' 2025-09-17 00:52:28,088 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:52:28,091 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 119 (Bump serialize-javascript and webpack) 00257fc993a12b3f78a45db039e7bf2c8a406062' 2025-09-17 00:52:28,199 [ scc.git] DEBUG Auto-merging package-lock.json 2025-09-17 00:52:28,199 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2025-09-17 00:52:28,200 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-09-17 00:52:28,200 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-09-17 00:52:28,203 [ scc.git] DEBUG Calling 'git reset --hard 89c511a716698737e79c9e496a931de5f27d9e7d' 2025-09-17 00:52:28,208 [ scc.git] DEBUG HEAD is now at 89c511a merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6) 2025-09-17 00:52:28,430 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:52:28,431 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 00257fc993a12b3f78a45db039e7bf2c8a406062' 2025-09-17 00:52:28,434 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd' 2025-09-17 00:52:28,437 [ scc.git] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' Conflicting PR. Removed from build [OMERO-plugins-push#534](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/534/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/534/consoleText) for more details. Possible conflicts: - PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - package-lock.json - PR #114 dependabot[bot] 'Bump tar and fsevents' - package-lock.json - PR #115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - package-lock.json - PR #116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - package-lock.json - PR #117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' - package-lock.json - PR #118 dependabot[bot] 'Bump braces, webpack-cli and webpack' - package-lock.json --conflicts 2025-09-17 00:52:28,439 [ scc.config] DEBUG Found github.token 2025-09-17 00:52:28,439 [ scc.git] DEBUG Not adding comment to issue #119, already --conflicts. 2025-09-17 00:52:28,439 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-17 00:52:28,481 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:52:28,481 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:52:28,483 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-17 00:52:28,522 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-17 00:52:28,526 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7501ce99d0> has no local changes 2025-09-17 00:52:28,527 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-gallery Already up to date. Merged PRs: - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - PR 114 dependabot[bot] 'Bump tar and fsevents' - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' Conflicting PRs (not included): - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' Generated by OMERO-plugins-push#534 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/534/)' 2025-09-17 00:52:28,534 [ scc.git] DEBUG [detached HEAD 251b87f] merge master -Dorg -Ssuccess-only 2025-09-17 00:52:28,534 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:52:28,534 [ scc.repo] DEBUG ## PRs found: 2025-09-17 00:52:29,017 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls HTTP/1.1" 200 None 2025-09-17 00:52:29,519 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/503 HTTP/1.1" 200 None 2025-09-17 00:52:29,990 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/503/comments HTTP/1.1" 200 None 2025-09-17 00:52:30,484 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/502 HTTP/1.1" 200 None 2025-09-17 00:52:30,945 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/502/comments HTTP/1.1" 200 None 2025-09-17 00:52:30,946 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-17 00:52:31,506 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/45d08b7e29871ecff0386975c975dacd0865bcc4 HTTP/1.1" 200 None 2025-09-17 00:52:32,013 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/45d08b7e29871ecff0386975c975dacd0865bcc4/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:52:32,499 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/45d08b7e29871ecff0386975c975dacd0865bcc4/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-17 00:52:33,064 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/45d08b7e29871ecff0386975c975dacd0865bcc4 HTTP/1.1" 200 None 2025-09-17 00:52:33,483 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/45d08b7e29871ecff0386975c975dacd0865bcc4?per_page=1 HTTP/1.1" 200 2 2025-09-17 00:52:33,484 [ scc.repo] DEBUG - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha' 2025-09-17 00:52:33,979 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/499 HTTP/1.1" 200 None 2025-09-17 00:52:33,980 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-17 00:52:34,511 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/b19bbac5f17ff2b53ba573ca58108d28d2d86bcc HTTP/1.1" 200 None 2025-09-17 00:52:35,025 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/b19bbac5f17ff2b53ba573ca58108d28d2d86bcc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:52:35,564 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/b19bbac5f17ff2b53ba573ca58108d28d2d86bcc/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-17 00:52:36,098 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/b19bbac5f17ff2b53ba573ca58108d28d2d86bcc HTTP/1.1" 200 None 2025-09-17 00:52:36,543 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/b19bbac5f17ff2b53ba573ca58108d28d2d86bcc?per_page=1 HTTP/1.1" 200 2 2025-09-17 00:52:36,543 [ scc.repo] DEBUG - PR 499 dependabot[bot] 'Bump nanoid and mocha' 2025-09-17 00:52:37,001 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/497 HTTP/1.1" 200 None 2025-09-17 00:52:37,484 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/497/comments HTTP/1.1" 200 None 2025-09-17 00:52:37,950 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/471 HTTP/1.1" 200 None 2025-09-17 00:52:38,411 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/471/comments HTTP/1.1" 200 None 2025-09-17 00:52:38,899 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9 HTTP/1.1" 200 None 2025-09-17 00:52:39,370 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:52:39,828 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9 HTTP/1.1" 200 None 2025-09-17 00:52:40,231 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/448d042a58da05a522531356cc58c1e35b5744d9?per_page=1 HTTP/1.1" 200 2 2025-09-17 00:52:40,232 [ scc.repo] DEBUG - PR 471 will-moore 'Z projection disabled tooltip' 2025-09-17 00:52:40,721 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/465 HTTP/1.1" 200 None 2025-09-17 00:52:41,183 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/465/comments HTTP/1.1" 200 None 2025-09-17 00:52:41,695 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/63dd9266a853ff522780066673d0ae2b770238cd HTTP/1.1" 200 None 2025-09-17 00:52:42,162 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/63dd9266a853ff522780066673d0ae2b770238cd/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:52:42,683 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/63dd9266a853ff522780066673d0ae2b770238cd HTTP/1.1" 200 None 2025-09-17 00:52:43,127 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/63dd9266a853ff522780066673d0ae2b770238cd?per_page=1 HTTP/1.1" 200 2 2025-09-17 00:52:43,128 [ scc.repo] DEBUG - PR 465 will-moore 'Save as Figure' 2025-09-17 00:52:43,600 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/460 HTTP/1.1" 200 None 2025-09-17 00:52:44,069 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/460/comments HTTP/1.1" 200 None 2025-09-17 00:52:44,610 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/dada2c46211e3bf8015cc47464ab2761ef74ca30 HTTP/1.1" 200 None 2025-09-17 00:52:45,076 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/dada2c46211e3bf8015cc47464ab2761ef74ca30/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:52:45,690 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/dada2c46211e3bf8015cc47464ab2761ef74ca30 HTTP/1.1" 200 None 2025-09-17 00:52:46,101 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/dada2c46211e3bf8015cc47464ab2761ef74ca30?per_page=1 HTTP/1.1" 200 2 2025-09-17 00:52:46,102 [ scc.repo] DEBUG - PR 460 will-moore 'Channel min spinner fix' 2025-09-17 00:52:46,553 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/227 HTTP/1.1" 200 None 2025-09-17 00:52:47,003 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/227/comments HTTP/1.1" 200 None 2025-09-17 00:52:47,523 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/a081a9f2892763bd49a7ad7ba425965150e76f97 HTTP/1.1" 200 None 2025-09-17 00:52:47,997 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/a081a9f2892763bd49a7ad7ba425965150e76f97/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:52:48,461 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/a081a9f2892763bd49a7ad7ba425965150e76f97/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-17 00:52:48,462 [ scc.repo] DEBUG ## Branches found: 2025-09-17 00:52:48,462 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer 2025-09-17 00:52:48,462 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:52:48,463 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:52:48,465 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-17 00:52:48,468 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-17 00:52:48,468 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-17 00:52:48,471 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-17 00:52:48,480 [ scc.git] DEBUG Updating 7a798ce..bb94cf8 2025-09-17 00:52:49,120 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/506 HTTP/1.1" 200 None 2025-09-17 00:52:49,121 [ scc.git] DEBUG Calling 'git fetch origin pull/460/head' 2025-09-17 00:52:51,462 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2025-09-17 00:52:51,462 [ scc.git] DEBUG * branch refs/pull/460/head -> FETCH_HEAD 2025-09-17 00:52:51,467 [ scc.git] DEBUG Calling 'git fetch origin pull/465/head' 2025-09-17 00:52:52,787 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2025-09-17 00:52:52,787 [ scc.git] DEBUG * branch refs/pull/465/head -> FETCH_HEAD 2025-09-17 00:52:52,792 [ scc.git] DEBUG Calling 'git fetch origin pull/471/head' 2025-09-17 00:52:53,117 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2025-09-17 00:52:53,117 [ scc.git] DEBUG * branch refs/pull/471/head -> FETCH_HEAD 2025-09-17 00:52:53,121 [ scc.git] DEBUG Calling 'git fetch origin pull/499/head' 2025-09-17 00:52:53,401 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2025-09-17 00:52:53,401 [ scc.git] DEBUG * branch refs/pull/499/head -> FETCH_HEAD 2025-09-17 00:52:53,405 [ scc.git] DEBUG Calling 'git fetch origin pull/502/head' 2025-09-17 00:52:53,689 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2025-09-17 00:52:53,689 [ scc.git] DEBUG * branch refs/pull/502/head -> FETCH_HEAD 2025-09-17 00:52:53,693 [ scc.git] DEBUG ## Unique users: [] 2025-09-17 00:52:53,693 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:52:53,693 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:52:53,696 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...dada2c46211e3bf8015cc47464ab2761ef74ca30' 2025-09-17 00:52:53,702 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:52:53,705 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 460 (Channel min spinner fix) dada2c46211e3bf8015cc47464ab2761ef74ca30' 2025-09-17 00:52:53,781 [ scc.git] DEBUG Auto-merging src/model/image_info.js 2025-09-17 00:52:53,781 [ scc.git] DEBUG Auto-merging src/settings/channel-range.js 2025-09-17 00:52:53,782 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-17 00:52:53,786 [ scc.git] DEBUG src/model/image_info.js | 7 ++++--- 2025-09-17 00:52:53,786 [ scc.git] DEBUG src/settings/channel-range.js | 4 +++- 2025-09-17 00:52:53,786 [ scc.git] DEBUG 2 files changed, 7 insertions(+), 4 deletions(-) 2025-09-17 00:52:53,941 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:52:53,942 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...63dd9266a853ff522780066673d0ae2b770238cd' 2025-09-17 00:52:53,948 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:52:53,950 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 465 (Save as Figure) 63dd9266a853ff522780066673d0ae2b770238cd' 2025-09-17 00:52:53,982 [ scc.git] DEBUG Auto-merging plugin/omero_iviewer/views.py 2025-09-17 00:52:53,982 [ scc.git] DEBUG Auto-merging src/app/context.js 2025-09-17 00:52:53,982 [ scc.git] DEBUG Auto-merging src/utils/constants.js 2025-09-17 00:52:53,982 [ scc.git] DEBUG Auto-merging src/viewers/viewer/Viewer.js 2025-09-17 00:52:53,983 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-17 00:52:53,988 [ scc.git] DEBUG plugin/omero_iviewer/views.py | 17 +++- 2025-09-17 00:52:53,988 [ scc.git] DEBUG src/app/context.js | 6 +- 2025-09-17 00:52:53,988 [ scc.git] DEBUG src/app/header.html | 5 + 2025-09-17 00:52:53,988 [ scc.git] DEBUG src/app/header.js | 45 ++++++++- 2025-09-17 00:52:53,988 [ scc.git] DEBUG src/utils/constants.js | 6 ++ 2025-09-17 00:52:53,988 [ scc.git] DEBUG src/utils/figure.js | 217 ++++++++++++++++++++++++++++++++++++++++++ 2025-09-17 00:52:53,988 [ scc.git] DEBUG 6 files changed, 290 insertions(+), 6 deletions(-) 2025-09-17 00:52:53,988 [ scc.git] DEBUG create mode 100644 src/utils/figure.js 2025-09-17 00:52:54,345 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:52:54,346 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...448d042a58da05a522531356cc58c1e35b5744d9' 2025-09-17 00:52:54,353 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:52:54,355 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 471 (Z projection disabled tooltip) 448d042a58da05a522531356cc58c1e35b5744d9' 2025-09-17 00:52:54,440 [ scc.git] DEBUG Auto-merging src/controls/dimension-slider.js 2025-09-17 00:52:54,441 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-17 00:52:54,445 [ scc.git] DEBUG src/controls/dimension-slider.html | 2 +- 2025-09-17 00:52:54,446 [ scc.git] DEBUG src/controls/dimension-slider.js | 20 ++++++++++++++++++++ 2025-09-17 00:52:54,446 [ scc.git] DEBUG 2 files changed, 21 insertions(+), 1 deletion(-) 2025-09-17 00:52:54,750 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:52:54,751 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b19bbac5f17ff2b53ba573ca58108d28d2d86bcc' 2025-09-17 00:52:54,827 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:52:54,830 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 499 (Bump nanoid and mocha) b19bbac5f17ff2b53ba573ca58108d28d2d86bcc' 2025-09-17 00:52:54,845 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-17 00:52:54,855 [ scc.git] DEBUG package-lock.json | 322 +++++++++++++++++++++++++++--------------------------- 2025-09-17 00:52:54,855 [ scc.git] DEBUG package.json | 2 +- 2025-09-17 00:52:54,855 [ scc.git] DEBUG 2 files changed, 163 insertions(+), 161 deletions(-) 2025-09-17 00:52:55,148 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:52:55,148 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45d08b7e29871ecff0386975c975dacd0865bcc4' 2025-09-17 00:52:55,218 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:52:55,221 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 502 (Bump serialize-javascript and mocha) 45d08b7e29871ecff0386975c975dacd0865bcc4' 2025-09-17 00:52:55,444 [ scc.git] DEBUG Auto-merging package-lock.json 2025-09-17 00:52:55,444 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2025-09-17 00:52:55,444 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-09-17 00:52:55,444 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-09-17 00:52:55,447 [ scc.git] DEBUG Calling 'git reset --hard ab3b579744eb29e0f8a8b4b4243526bf62371263' 2025-09-17 00:52:55,455 [ scc.git] DEBUG HEAD is now at ab3b579 merge master -Dorg -Ssuccess-only: PR 499 (Bump nanoid and mocha) 2025-09-17 00:52:55,604 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:52:55,605 [ scc.git] DEBUG Calling 'git merge-base bb94cf8da960e3283090038b04432f301560f5e4 45d08b7e29871ecff0386975c975dacd0865bcc4' 2025-09-17 00:52:55,608 [ scc.git] DEBUG Calling 'git diff --name-only 7a798ceeb3926d049d73788555fb63269a071052..bb94cf8da960e3283090038b04432f301560f5e4' 2025-09-17 00:52:55,611 [ scc.git] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha' Conflicting PR. Removed from build [OMERO-plugins-push#534](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/534/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/534/consoleText) for more details. Possible conflicts: - PR #499 dependabot[bot] 'Bump nanoid and mocha' - package-lock.json --conflicts 2025-09-17 00:52:55,613 [ scc.config] DEBUG Found github.token 2025-09-17 00:52:55,613 [ scc.git] DEBUG Not adding comment to issue #502, already --conflicts. 2025-09-17 00:52:55,613 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-17 00:52:55,654 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:52:55,654 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:52:55,656 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-17 00:52:55,694 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-17 00:52:55,701 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7500b20850> has no local changes 2025-09-17 00:52:55,701 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-iviewer Excluded PRs: - PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft) - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft) - PR 420 will-moore 'Add release process to README' (exclude comment) - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment) - PR 227 will-moore 'Vectortile investigation' (status: failure) Updating 7a798ce..bb94cf8 Previously merged: - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 460 will-moore 'Channel min spinner fix' - PR 465 will-moore 'Save as Figure' - PR 471 will-moore 'Z projection disabled tooltip' - PR 499 dependabot[bot] 'Bump nanoid and mocha' Conflicting PRs (not included): - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha' Generated by OMERO-plugins-push#534 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/534/)' 2025-09-17 00:52:55,711 [ scc.git] DEBUG [detached HEAD c1becdf] merge master -Dorg -Ssuccess-only 2025-09-17 00:52:55,712 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:52:55,712 [ scc.repo] DEBUG ## PRs found: 2025-09-17 00:52:56,111 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/pulls HTTP/1.1" 200 None 2025-09-17 00:52:56,624 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95 HTTP/1.1" 200 None 2025-09-17 00:52:57,077 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95/comments HTTP/1.1" 200 None 2025-09-17 00:52:57,077 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-17 00:52:57,646 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99 HTTP/1.1" 200 None 2025-09-17 00:52:58,171 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:52:58,703 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-17 00:52:59,269 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99 HTTP/1.1" 200 None 2025-09-17 00:52:59,711 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/38cc352a088eaedfaa2dd8874c4f200f98f41a99?per_page=1 HTTP/1.1" 200 2 2025-09-17 00:52:59,711 [ scc.repo] DEBUG - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-17 00:53:00,174 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/94 HTTP/1.1" 200 None 2025-09-17 00:53:00,677 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None 2025-09-17 00:53:01,117 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:53:01,639 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None 2025-09-17 00:53:02,054 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1896cfebc876f939f8d83bd1cf56b8584ff2921d?per_page=1 HTTP/1.1" 200 2 2025-09-17 00:53:02,055 [ scc.repo] DEBUG - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2025-09-17 00:53:02,550 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None 2025-09-17 00:53:03,029 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None 2025-09-17 00:53:03,570 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None 2025-09-17 00:53:04,028 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:53:04,520 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None 2025-09-17 00:53:04,938 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/45ee35acc44a7d119aa20b38b0427efbe5405322?per_page=1 HTTP/1.1" 200 2 2025-09-17 00:53:04,938 [ scc.repo] DEBUG - PR 74 will-moore 'mapr extension of webclient' 2025-09-17 00:53:04,938 [ scc.repo] DEBUG ## Branches found: 2025-09-17 00:53:04,938 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr 2025-09-17 00:53:04,938 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:53:04,939 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:53:04,941 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-17 00:53:04,944 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-17 00:53:04,944 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-17 00:53:04,958 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-17 00:53:04,961 [ scc.git] DEBUG Already up to date. 2025-09-17 00:53:04,961 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head' 2025-09-17 00:53:05,762 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2025-09-17 00:53:05,762 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD 2025-09-17 00:53:05,767 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head' 2025-09-17 00:53:06,048 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2025-09-17 00:53:06,048 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD 2025-09-17 00:53:06,053 [ scc.git] DEBUG Calling 'git fetch origin pull/95/head' 2025-09-17 00:53:06,330 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2025-09-17 00:53:06,330 [ scc.git] DEBUG * branch refs/pull/95/head -> FETCH_HEAD 2025-09-17 00:53:06,334 [ scc.git] DEBUG ## Unique users: [] 2025-09-17 00:53:06,334 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:53:06,334 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:53:06,336 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45ee35acc44a7d119aa20b38b0427efbe5405322' 2025-09-17 00:53:06,341 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:53:06,343 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (mapr extension of webclient) 45ee35acc44a7d119aa20b38b0427efbe5405322' 2025-09-17 00:53:06,407 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-17 00:53:06,411 [ scc.git] DEBUG .../templates/webclient/base/base_container.html | 182 +++++++++++++ 2025-09-17 00:53:06,411 [ scc.git] DEBUG .../data/includes/right_plugin.general.js.html | 290 --------------------- 2025-09-17 00:53:06,411 [ scc.git] DEBUG requirements.txt | 2 +- 2025-09-17 00:53:06,411 [ scc.git] DEBUG 3 files changed, 183 insertions(+), 291 deletions(-) 2025-09-17 00:53:06,411 [ scc.git] DEBUG create mode 100644 omero_mapr/templates/webclient/base/base_container.html 2025-09-17 00:53:06,411 [ scc.git] DEBUG delete mode 100644 omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html 2025-09-17 00:53:06,548 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:53:06,549 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d' 2025-09-17 00:53:06,553 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:53:06,555 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d' 2025-09-17 00:53:06,650 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-17 00:53:06,652 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-09-17 00:53:06,653 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-09-17 00:53:06,941 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:53:06,942 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38cc352a088eaedfaa2dd8874c4f200f98f41a99' 2025-09-17 00:53:07,028 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:53:07,031 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 95 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 38cc352a088eaedfaa2dd8874c4f200f98f41a99' 2025-09-17 00:53:07,102 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml 2025-09-17 00:53:07,102 [ scc.git] DEBUG CONFLICT (content): Merge conflict in .github/workflows/publish_pypi.yml 2025-09-17 00:53:07,102 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-09-17 00:53:07,103 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-09-17 00:53:07,105 [ scc.git] DEBUG Calling 'git reset --hard 992a49b4fb94e3c7c025733b8d15c9b9a8d82985' 2025-09-17 00:53:07,109 [ scc.git] DEBUG HEAD is now at 992a49b merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 2025-09-17 00:53:07,327 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:53:07,327 [ scc.git] DEBUG Calling 'git merge-base 0a557da89145e65db313c1721a26cb43e490dd8a 38cc352a088eaedfaa2dd8874c4f200f98f41a99' 2025-09-17 00:53:07,330 [ scc.git] DEBUG Calling 'git diff --name-only 0a557da89145e65db313c1721a26cb43e490dd8a..0a557da89145e65db313c1721a26cb43e490dd8a' 2025-09-17 00:53:07,333 [ scc.git] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Conflicting PR. Removed from build [OMERO-plugins-push#534](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/534/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/534/consoleText) for more details. Possible conflicts: - PR #94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' - .github/workflows/publish_pypi.yml --conflicts 2025-09-17 00:53:07,335 [ scc.config] DEBUG Found github.token 2025-09-17 00:53:07,335 [ scc.git] DEBUG Not adding comment to issue #95, already --conflicts. 2025-09-17 00:53:07,335 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-17 00:53:07,375 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:53:07,375 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:53:07,378 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-17 00:53:07,416 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-17 00:53:07,421 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7500b21c90> has no local changes 2025-09-17 00:53:07,421 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-mapr Excluded PRs: - PR 79 will-moore 'Right panel title' (exclude comment) Already up to date. Merged PRs: - PR 74 will-moore 'mapr extension of webclient' - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Conflicting PRs (not included): - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#534 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/534/)' 2025-09-17 00:53:07,427 [ scc.git] DEBUG [detached HEAD c8edda8] merge master -Dorg -Ssuccess-only 2025-09-17 00:53:07,428 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:53:07,428 [ scc.repo] DEBUG ## PRs found: 2025-09-17 00:53:07,859 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None 2025-09-17 00:53:08,362 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None 2025-09-17 00:53:08,839 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None 2025-09-17 00:53:09,427 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None 2025-09-17 00:53:09,880 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:53:10,396 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None 2025-09-17 00:53:10,858 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2 2025-09-17 00:53:10,858 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate' 2025-09-17 00:53:11,322 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None 2025-09-17 00:53:11,770 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None 2025-09-17 00:53:12,285 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None 2025-09-17 00:53:12,751 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:53:13,220 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None 2025-09-17 00:53:13,642 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2 2025-09-17 00:53:13,642 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names' 2025-09-17 00:53:13,642 [ scc.repo] DEBUG ## Branches found: 2025-09-17 00:53:13,642 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata 2025-09-17 00:53:13,643 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:53:13,643 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:53:13,645 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-17 00:53:13,648 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-17 00:53:13,648 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-17 00:53:13,651 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-17 00:53:13,660 [ scc.git] DEBUG Updating 3cd120c..55060a2 2025-09-17 00:53:14,280 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None 2025-09-17 00:53:14,281 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head' 2025-09-17 00:53:15,083 [ scc.git] DEBUG From https://github.com/ome/omero-metadata 2025-09-17 00:53:15,083 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD 2025-09-17 00:53:15,088 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head' 2025-09-17 00:53:15,666 [ scc.git] DEBUG From https://github.com/ome/omero-metadata 2025-09-17 00:53:15,666 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD 2025-09-17 00:53:15,672 [ scc.git] DEBUG ## Unique users: [] 2025-09-17 00:53:15,672 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:53:15,672 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:53:15,675 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102' 2025-09-17 00:53:15,680 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:53:15,682 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102' 2025-09-17 00:53:15,929 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py 2025-09-17 00:53:15,929 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py 2025-09-17 00:53:15,929 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py 2025-09-17 00:53:15,929 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py 2025-09-17 00:53:15,929 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-09-17 00:53:15,930 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-09-17 00:53:15,933 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501' 2025-09-17 00:53:15,938 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action 2025-09-17 00:53:16,079 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:53:16,080 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102' 2025-09-17 00:53:16,084 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501' 2025-09-17 00:53:16,087 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names' Conflicting PR. Removed from build [OMERO-plugins-push#534](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/534/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/534/consoleText) for more details. Possible conflicts: - Upstream changes - src/omero_metadata/cli.py - src/omero_metadata/populate.py --conflicts 2025-09-17 00:53:16,090 [ scc.config] DEBUG Found github.token 2025-09-17 00:53:16,090 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts. 2025-09-17 00:53:16,090 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7' 2025-09-17 00:53:16,094 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:53:16,096 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7' 2025-09-17 00:53:16,301 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py 2025-09-17 00:53:16,301 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py 2025-09-17 00:53:16,301 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py 2025-09-17 00:53:16,301 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-09-17 00:53:16,302 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-09-17 00:53:16,305 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501' 2025-09-17 00:53:16,310 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action 2025-09-17 00:53:16,478 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:53:16,479 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7' 2025-09-17 00:53:16,483 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501' 2025-09-17 00:53:16,486 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate' Conflicting PR. Removed from build [OMERO-plugins-push#534](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/534/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/534/consoleText) for more details. Possible conflicts: - PR #55 kkoz 'Prevent users from creating columns with python keyword names' - src/omero_metadata/populate.py - Upstream changes - src/omero_metadata/populate.py --conflicts 2025-09-17 00:53:16,488 [ scc.config] DEBUG Found github.token 2025-09-17 00:53:16,488 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts. 2025-09-17 00:53:16,488 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-17 00:53:16,532 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:53:16,532 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:53:16,534 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-17 00:53:16,575 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-17 00:53:16,579 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7501c3c490> has no local changes 2025-09-17 00:53:16,580 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-metadata Updating 3cd120c..55060a2 Previously merged: - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Conflicting PRs (not included): - PR 55 kkoz 'Prevent users from creating columns with python keyword names' - PR 64 will-moore 'Support images_by_name for Screen and Plate' Generated by OMERO-plugins-push#534 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/534/)' 2025-09-17 00:53:16,588 [ scc.git] DEBUG [detached HEAD 34d5482] merge master -Dorg -Ssuccess-only 2025-09-17 00:53:16,588 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:53:16,588 [ scc.repo] DEBUG ## PRs found: 2025-09-17 00:53:17,125 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None 2025-09-17 00:53:17,605 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None 2025-09-17 00:53:18,142 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None 2025-09-17 00:53:18,655 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:53:19,136 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-17 00:53:19,634 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None 2025-09-17 00:53:20,056 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2 2025-09-17 00:53:20,056 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2025-09-17 00:53:20,569 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None 2025-09-17 00:53:20,570 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-17 00:53:21,121 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None 2025-09-17 00:53:21,606 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:53:22,122 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-17 00:53:22,713 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None 2025-09-17 00:53:23,129 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2 2025-09-17 00:53:23,129 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' 2025-09-17 00:53:23,587 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None 2025-09-17 00:53:23,588 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-17 00:53:24,120 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None 2025-09-17 00:53:24,619 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:53:25,144 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-17 00:53:25,731 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None 2025-09-17 00:53:26,145 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2 2025-09-17 00:53:26,146 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' 2025-09-17 00:53:26,604 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None 2025-09-17 00:53:27,070 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None 2025-09-17 00:53:27,586 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None 2025-09-17 00:53:28,068 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None 2025-09-17 00:53:28,555 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None 2025-09-17 00:53:29,038 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None 2025-09-17 00:53:29,496 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None 2025-09-17 00:53:29,497 [ scc.repo] DEBUG ## Branches found: 2025-09-17 00:53:29,497 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade 2025-09-17 00:53:29,498 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:53:29,498 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:53:29,501 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-17 00:53:29,503 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-17 00:53:29,503 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-17 00:53:29,506 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-17 00:53:29,509 [ scc.git] DEBUG Already up to date. 2025-09-17 00:53:29,509 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head' 2025-09-17 00:53:29,803 [ scc.git] DEBUG From https://github.com/ome/omero-parade 2025-09-17 00:53:29,803 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD 2025-09-17 00:53:29,807 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head' 2025-09-17 00:53:30,084 [ scc.git] DEBUG From https://github.com/ome/omero-parade 2025-09-17 00:53:30,084 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD 2025-09-17 00:53:30,088 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head' 2025-09-17 00:53:30,426 [ scc.git] DEBUG From https://github.com/ome/omero-parade 2025-09-17 00:53:30,426 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD 2025-09-17 00:53:30,430 [ scc.git] DEBUG ## Unique users: [] 2025-09-17 00:53:30,431 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:53:30,431 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:53:30,433 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0' 2025-09-17 00:53:30,450 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:53:30,452 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0' 2025-09-17 00:53:30,517 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-17 00:53:30,521 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++---------------------------- 2025-09-17 00:53:30,521 [ scc.git] DEBUG package.json | 2 +- 2025-09-17 00:53:30,521 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-) 2025-09-17 00:53:30,658 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:53:30,659 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80' 2025-09-17 00:53:30,719 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:53:30,722 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80' 2025-09-17 00:53:30,886 [ scc.git] DEBUG Auto-merging package-lock.json 2025-09-17 00:53:30,887 [ scc.git] DEBUG Auto-merging package.json 2025-09-17 00:53:30,887 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-17 00:53:30,891 [ scc.git] DEBUG package-lock.json | 18 ++++++++++-------- 2025-09-17 00:53:30,891 [ scc.git] DEBUG package.json | 2 +- 2025-09-17 00:53:30,891 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-) 2025-09-17 00:53:31,052 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:53:31,052 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0' 2025-09-17 00:53:31,055 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:53:31,057 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0' 2025-09-17 00:53:31,067 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-17 00:53:31,070 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-09-17 00:53:31,070 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-09-17 00:53:31,452 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:53:31,453 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-17 00:53:31,494 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:53:31,494 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:53:31,496 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-17 00:53:31,538 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-17 00:53:31,542 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7501ce9f50> has no local changes 2025-09-17 00:53:31,542 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-parade Excluded PRs: - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft) - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment) - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment) - PR 39 chris-allan 'Expand all for Screens' (exclude comment) Already up to date. Merged PRs: - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Generated by OMERO-plugins-push#534 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/534/)' 2025-09-17 00:53:31,549 [ scc.git] DEBUG [detached HEAD 3ad2dac] merge master -Dorg -Ssuccess-only 2025-09-17 00:53:31,549 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:53:31,549 [ scc.repo] DEBUG ## PRs found: 2025-09-17 00:53:31,924 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None 2025-09-17 00:53:32,397 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/16 HTTP/1.1" 200 None 2025-09-17 00:53:32,397 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-17 00:53:33,008 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None 2025-09-17 00:53:33,547 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:53:34,125 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-17 00:53:34,686 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None 2025-09-17 00:53:35,117 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/5381b9f25e1666d81d236039a1317276291e9b2e?per_page=1 HTTP/1.1" 200 2 2025-09-17 00:53:35,117 [ scc.repo] DEBUG - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-17 00:53:35,117 [ scc.repo] DEBUG ## Branches found: 2025-09-17 00:53:35,117 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools 2025-09-17 00:53:35,117 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:53:35,117 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:53:35,120 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-17 00:53:35,122 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-17 00:53:35,122 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-17 00:53:35,126 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-17 00:53:35,129 [ scc.git] DEBUG Already up to date. 2025-09-17 00:53:35,129 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head' 2025-09-17 00:53:35,422 [ scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools 2025-09-17 00:53:35,422 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD 2025-09-17 00:53:35,427 [ scc.git] DEBUG ## Unique users: [] 2025-09-17 00:53:35,427 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:53:35,427 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:53:35,429 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5381b9f25e1666d81d236039a1317276291e9b2e' 2025-09-17 00:53:35,432 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:53:35,435 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 5381b9f25e1666d81d236039a1317276291e9b2e' 2025-09-17 00:53:35,442 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-17 00:53:35,445 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-09-17 00:53:35,445 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-09-17 00:53:35,591 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:53:35,591 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-17 00:53:35,634 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:53:35,634 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:53:35,636 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-17 00:53:35,678 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-17 00:53:35,682 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7500b2e9d0> has no local changes 2025-09-17 00:53:35,682 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-prometheus-tools Already up to date. Merged PRs: - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#534 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/534/)' 2025-09-17 00:53:35,688 [ scc.git] DEBUG [detached HEAD 4be244d] merge master -Dorg -Ssuccess-only 2025-09-17 00:53:35,689 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:53:35,689 [ scc.repo] DEBUG ## PRs found: 2025-09-17 00:53:36,112 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None 2025-09-17 00:53:36,604 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/34 HTTP/1.1" 200 None 2025-09-17 00:53:36,605 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-17 00:53:37,160 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None 2025-09-17 00:53:37,670 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:53:38,145 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-17 00:53:38,696 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None 2025-09-17 00:53:39,146 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/149bb248277256d589ea0db597c04739e8134301?per_page=1 HTTP/1.1" 200 None 2025-09-17 00:53:39,595 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None 2025-09-17 00:53:40,057 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/status HTTP/1.1" 200 None 2025-09-17 00:53:40,057 [ scc.repo] DEBUG - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-17 00:53:40,528 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33 HTTP/1.1" 200 None 2025-09-17 00:53:40,987 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33/comments HTTP/1.1" 200 None 2025-09-17 00:53:41,499 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None 2025-09-17 00:53:42,001 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:53:42,451 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-17 00:53:42,972 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None 2025-09-17 00:53:43,406 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/1122baea98746effd4eb59deed25870f673ce3d3?per_page=1 HTTP/1.1" 200 None 2025-09-17 00:53:43,857 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None 2025-09-17 00:53:44,288 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/status HTTP/1.1" 200 None 2025-09-17 00:53:44,288 [ scc.repo] DEBUG - PR 33 jo-mueller 'Add roi to array functions' 2025-09-17 00:53:44,794 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None 2025-09-17 00:53:44,794 [ scc.repo] DEBUG ## Branches found: 2025-09-17 00:53:44,794 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois 2025-09-17 00:53:44,795 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:53:44,795 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:53:44,797 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-17 00:53:44,800 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-17 00:53:44,800 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-17 00:53:44,803 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-17 00:53:44,806 [ scc.git] DEBUG Already up to date. 2025-09-17 00:53:44,806 [ scc.git] DEBUG Calling 'git fetch origin pull/33/head' 2025-09-17 00:53:45,823 [ scc.git] DEBUG From https://github.com/ome/omero-rois 2025-09-17 00:53:45,823 [ scc.git] DEBUG * branch refs/pull/33/head -> FETCH_HEAD 2025-09-17 00:53:45,828 [ scc.git] DEBUG Calling 'git fetch origin pull/34/head' 2025-09-17 00:53:46,109 [ scc.git] DEBUG From https://github.com/ome/omero-rois 2025-09-17 00:53:46,109 [ scc.git] DEBUG * branch refs/pull/34/head -> FETCH_HEAD 2025-09-17 00:53:46,114 [ scc.git] DEBUG ## Unique users: [] 2025-09-17 00:53:46,114 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:53:46,114 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:53:46,116 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1122baea98746effd4eb59deed25870f673ce3d3' 2025-09-17 00:53:46,119 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:53:46,122 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 33 (Add roi to array functions) 1122baea98746effd4eb59deed25870f673ce3d3' 2025-09-17 00:53:46,130 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-17 00:53:46,133 [ scc.git] DEBUG setup.py | 4 +- 2025-09-17 00:53:46,133 [ scc.git] DEBUG src/omero_rois/__init__.py | 4 + 2025-09-17 00:53:46,133 [ scc.git] DEBUG src/omero_rois/library.py | 204 +++++++++++++++++++++++++++++++++++++++++++-- 2025-09-17 00:53:46,133 [ scc.git] DEBUG 3 files changed, 203 insertions(+), 9 deletions(-) 2025-09-17 00:53:46,279 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:53:46,279 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...149bb248277256d589ea0db597c04739e8134301' 2025-09-17 00:53:46,289 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:53:46,292 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 34 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 149bb248277256d589ea0db597c04739e8134301' 2025-09-17 00:53:46,302 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-17 00:53:46,305 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-09-17 00:53:46,305 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-09-17 00:53:46,672 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:53:46,672 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-17 00:53:46,712 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:53:46,712 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:53:46,714 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-17 00:53:46,754 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-17 00:53:46,757 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7500af25d0> has no local changes 2025-09-17 00:53:46,757 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-rois Excluded PRs: - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) Already up to date. Merged PRs: - PR 33 jo-mueller 'Add roi to array functions' - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#534 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/534/)' 2025-09-17 00:53:46,764 [ scc.git] DEBUG [detached HEAD 44b6ab8] merge master -Dorg -Ssuccess-only 2025-09-17 00:53:46,765 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:53:46,765 [ scc.repo] DEBUG ## PRs found: 2025-09-17 00:53:47,249 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None 2025-09-17 00:53:47,760 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/22 HTTP/1.1" 200 None 2025-09-17 00:53:47,761 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-17 00:53:48,332 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None 2025-09-17 00:53:48,815 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:53:49,314 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-17 00:53:49,876 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None 2025-09-17 00:53:50,309 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/8b27e47a330555e99e9594f0c4b546946f4f98aa?per_page=1 HTTP/1.1" 200 2 2025-09-17 00:53:50,309 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-17 00:53:50,762 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None 2025-09-17 00:53:51,225 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None 2025-09-17 00:53:51,745 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None 2025-09-17 00:53:52,192 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:53:52,647 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None 2025-09-17 00:53:53,143 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2 2025-09-17 00:53:53,143 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)' 2025-09-17 00:53:53,143 [ scc.repo] DEBUG ## Branches found: 2025-09-17 00:53:53,143 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup 2025-09-17 00:53:53,144 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:53:53,144 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:53:53,146 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-17 00:53:53,149 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-17 00:53:53,149 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-17 00:53:53,152 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-17 00:53:53,155 [ scc.git] DEBUG Already up to date. 2025-09-17 00:53:53,155 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head' 2025-09-17 00:53:53,696 [ scc.git] DEBUG From https://github.com/ome/omero-signup 2025-09-17 00:53:53,696 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD 2025-09-17 00:53:53,701 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head' 2025-09-17 00:53:53,980 [ scc.git] DEBUG From https://github.com/ome/omero-signup 2025-09-17 00:53:53,980 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD 2025-09-17 00:53:53,984 [ scc.git] DEBUG ## Unique users: [] 2025-09-17 00:53:53,984 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:53:53,984 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:53:53,986 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d' 2025-09-17 00:53:53,990 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:53:53,992 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d' 2025-09-17 00:53:54,223 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py 2025-09-17 00:53:54,223 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py 2025-09-17 00:53:54,223 [ scc.git] DEBUG Auto-merging omero_signup/urls.py 2025-09-17 00:53:54,223 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py 2025-09-17 00:53:54,223 [ scc.git] DEBUG Auto-merging omero_signup/views.py 2025-09-17 00:53:54,223 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py 2025-09-17 00:53:54,223 [ scc.git] DEBUG Auto-merging setup.py 2025-09-17 00:53:54,223 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py 2025-09-17 00:53:54,223 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-09-17 00:53:54,223 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-09-17 00:53:54,226 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e' 2025-09-17 00:53:54,230 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build 2025-09-17 00:53:54,362 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:53:54,363 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d' 2025-09-17 00:53:54,366 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e' 2025-09-17 00:53:54,369 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)' Conflicting PR. Removed from build [OMERO-plugins-push#534](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/534/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/534/consoleText) for more details. Possible conflicts: - Upstream changes - omero_signup/urls.py - omero_signup/views.py - omero_signup/signup_settings.py - setup.py --conflicts 2025-09-17 00:53:54,371 [ scc.config] DEBUG Found github.token 2025-09-17 00:53:54,371 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts. 2025-09-17 00:53:54,371 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8b27e47a330555e99e9594f0c4b546946f4f98aa' 2025-09-17 00:53:54,374 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:53:54,377 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8b27e47a330555e99e9594f0c4b546946f4f98aa' 2025-09-17 00:53:54,384 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-17 00:53:54,387 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-09-17 00:53:54,387 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-09-17 00:53:54,762 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:53:54,762 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-17 00:53:54,802 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:53:54,802 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:53:54,804 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-17 00:53:54,843 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-17 00:53:54,847 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7500b71b90> has no local changes 2025-09-17 00:53:54,847 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-signup Already up to date. Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Conflicting PRs (not included): - PR 14 manics 'Add pre-commit (black, flake8)' Generated by OMERO-plugins-push#534 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/534/)' 2025-09-17 00:53:54,854 [ scc.git] DEBUG [detached HEAD df5feca] merge master -Dorg -Ssuccess-only 2025-09-17 00:53:54,854 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:53:54,854 [ scc.repo] DEBUG ## PRs found: 2025-09-17 00:53:55,285 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None 2025-09-17 00:53:55,804 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/76 HTTP/1.1" 200 None 2025-09-17 00:53:56,356 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None 2025-09-17 00:53:56,864 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:53:57,328 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-17 00:53:57,775 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None 2025-09-17 00:53:58,229 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6?per_page=1 HTTP/1.1" 200 2 2025-09-17 00:53:58,229 [ scc.repo] DEBUG - PR 76 will-moore 'Run cli deps' 2025-09-17 00:53:58,714 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None 2025-09-17 00:53:59,196 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None 2025-09-17 00:53:59,729 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None 2025-09-17 00:54:00,222 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:54:00,729 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-17 00:54:01,275 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73 HTTP/1.1" 200 None 2025-09-17 00:54:01,754 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73/comments HTTP/1.1" 200 None 2025-09-17 00:54:02,245 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12 HTTP/1.1" 200 None 2025-09-17 00:54:02,697 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12/comments HTTP/1.1" 200 None 2025-09-17 00:54:03,214 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None 2025-09-17 00:54:03,682 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:54:04,222 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None 2025-09-17 00:54:04,633 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/425319051224e8481afc40083fd9b5db4bc99928?per_page=1 HTTP/1.1" 200 2 2025-09-17 00:54:04,633 [ scc.repo] DEBUG - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra' 2025-09-17 00:54:04,633 [ scc.repo] DEBUG ## Branches found: 2025-09-17 00:54:04,633 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra 2025-09-17 00:54:04,633 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:54:04,634 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:54:04,636 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-17 00:54:04,639 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-17 00:54:04,639 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-17 00:54:04,642 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-17 00:54:04,646 [ scc.git] DEBUG Already up to date. 2025-09-17 00:54:04,646 [ scc.git] DEBUG Calling 'git fetch origin pull/12/head' 2025-09-17 00:54:04,995 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra 2025-09-17 00:54:04,995 [ scc.git] DEBUG * branch refs/pull/12/head -> FETCH_HEAD 2025-09-17 00:54:04,999 [ scc.git] DEBUG Calling 'git fetch origin pull/76/head' 2025-09-17 00:54:05,316 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra 2025-09-17 00:54:05,316 [ scc.git] DEBUG * branch refs/pull/76/head -> FETCH_HEAD 2025-09-17 00:54:05,321 [ scc.git] DEBUG ## Unique users: [] 2025-09-17 00:54:05,321 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:54:05,321 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:54:05,323 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...425319051224e8481afc40083fd9b5db4bc99928' 2025-09-17 00:54:05,328 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:54:05,330 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 12 (IDR: use downloaded ansible templates & variables to configure infra) 425319051224e8481afc40083fd9b5db4bc99928' 2025-09-17 00:54:05,386 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-17 00:54:05,389 [ scc.git] DEBUG idr-compose.yml | 66 ++++++++++++++ 2025-09-17 00:54:05,389 [ scc.git] DEBUG idr-haproxy.yml | 58 +++++++++++++ 2025-09-17 00:54:05,389 [ scc.git] DEBUG idr/40-ansible.sh | 7 ++ 2025-09-17 00:54:05,389 [ scc.git] DEBUG idr/70-reset-password.sh | 1 + 2025-09-17 00:54:05,389 [ scc.git] DEBUG idr/nginx/conf.d/default.conf | 1 + 2025-09-17 00:54:05,389 [ scc.git] DEBUG idr/nginx/conf.d/example_ssl.conf | 1 + 2025-09-17 00:54:05,390 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cache.conf | 53 +++++++++++ 2025-09-17 00:54:05,390 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cachebuster.conf | 114 ++++++++++++++++++++++++ 2025-09-17 00:54:05,390 [ scc.git] DEBUG idr/nginx/conf.d/proxy-default.conf | 135 +++++++++++++++++++++++++++++ 2025-09-17 00:54:05,390 [ scc.git] DEBUG idr/nginx/conf.d/proxy-omeroreadwrite.conf | 115 ++++++++++++++++++++++++ 2025-09-17 00:54:05,390 [ scc.git] DEBUG idr/nginx/conf.d/proxy-redirect.conf | 15 ++++ 2025-09-17 00:54:05,391 [ scc.git] DEBUG idr/nginx/conf.d/proxy-upstream.conf | 13 +++ 2025-09-17 00:54:05,391 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v0.conf | 26 ++++++ 2025-09-17 00:54:05,391 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v1.conf | 30 +++++++ 2025-09-17 00:54:05,391 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v2.conf | 30 +++++++ 2025-09-17 00:54:05,391 [ scc.git] DEBUG idr/nginx/conf.d/proxy-websockets.conf | 6 ++ 2025-09-17 00:54:05,391 [ scc.git] DEBUG idr/nginx/nginx.conf | 53 +++++++++++ 2025-09-17 00:54:05,391 [ scc.git] DEBUG idr/omero/Dockerfile | 3 + 2025-09-17 00:54:05,391 [ scc.git] DEBUG idr/omero/playbook.yml | 41 +++++++++ 2025-09-17 00:54:05,391 [ scc.git] DEBUG idr/redirect/Dockerfile | 6 ++ 2025-09-17 00:54:05,391 [ scc.git] DEBUG idr/web/Dockerfile | 5 ++ 2025-09-17 00:54:05,391 [ scc.git] DEBUG idr/web/playbook.yml | 45 ++++++++++ 2025-09-17 00:54:05,391 [ scc.git] DEBUG 22 files changed, 824 insertions(+) 2025-09-17 00:54:05,391 [ scc.git] DEBUG create mode 100644 idr-compose.yml 2025-09-17 00:54:05,391 [ scc.git] DEBUG create mode 100644 idr-haproxy.yml 2025-09-17 00:54:05,391 [ scc.git] DEBUG create mode 100755 idr/40-ansible.sh 2025-09-17 00:54:05,391 [ scc.git] DEBUG create mode 100755 idr/70-reset-password.sh 2025-09-17 00:54:05,391 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/default.conf 2025-09-17 00:54:05,391 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/example_ssl.conf 2025-09-17 00:54:05,391 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cache.conf 2025-09-17 00:54:05,391 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cachebuster.conf 2025-09-17 00:54:05,391 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-default.conf 2025-09-17 00:54:05,391 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-omeroreadwrite.conf 2025-09-17 00:54:05,391 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-redirect.conf 2025-09-17 00:54:05,391 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-upstream.conf 2025-09-17 00:54:05,391 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v0.conf 2025-09-17 00:54:05,391 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v1.conf 2025-09-17 00:54:05,391 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v2.conf 2025-09-17 00:54:05,391 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-websockets.conf 2025-09-17 00:54:05,391 [ scc.git] DEBUG create mode 100644 idr/nginx/nginx.conf 2025-09-17 00:54:05,391 [ scc.git] DEBUG create mode 100644 idr/omero/Dockerfile 2025-09-17 00:54:05,391 [ scc.git] DEBUG create mode 100644 idr/omero/playbook.yml 2025-09-17 00:54:05,391 [ scc.git] DEBUG create mode 100644 idr/redirect/Dockerfile 2025-09-17 00:54:05,391 [ scc.git] DEBUG create mode 100644 idr/web/Dockerfile 2025-09-17 00:54:05,391 [ scc.git] DEBUG create mode 100644 idr/web/playbook.yml 2025-09-17 00:54:05,542 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:54:05,543 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6' 2025-09-17 00:54:05,547 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:54:05,550 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 76 (Run cli deps) bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6' 2025-09-17 00:54:05,560 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-17 00:54:05,563 [ scc.git] DEBUG docker | 1 + 2025-09-17 00:54:05,563 [ scc.git] DEBUG 1 file changed, 1 insertion(+) 2025-09-17 00:54:05,938 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:54:05,938 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-17 00:54:05,979 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:54:05,979 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:54:05,981 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-17 00:54:06,022 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-17 00:54:06,026 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7500b390d0> has no local changes 2025-09-17 00:54:06,026 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: openmicroscopy/omero-test-infra Excluded PRs: - PR 75 marimeireles 'Microservices' (user: marimeireles) - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure) - PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles) Already up to date. Merged PRs: - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra' - PR 76 will-moore 'Run cli deps' Generated by OMERO-plugins-push#534 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/534/)' 2025-09-17 00:54:06,033 [ scc.git] DEBUG [detached HEAD 6f03c62] merge master -Dorg -Ssuccess-only 2025-09-17 00:54:06,033 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:54:06,033 [ scc.repo] DEBUG ## PRs found: 2025-09-17 00:54:06,423 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 None 2025-09-17 00:54:06,984 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/issues/14 HTTP/1.1" 200 None 2025-09-17 00:54:06,985 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-17 00:54:07,565 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None 2025-09-17 00:54:08,104 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:54:08,605 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-17 00:54:09,181 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None 2025-09-17 00:54:09,598 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/statuses/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?per_page=1 HTTP/1.1" 200 2 2025-09-17 00:54:09,598 [ scc.repo] DEBUG - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-17 00:54:09,598 [ scc.repo] DEBUG ## Branches found: 2025-09-17 00:54:09,598 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload 2025-09-17 00:54:09,598 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:54:09,598 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:54:09,601 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-17 00:54:09,603 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-17 00:54:09,604 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-17 00:54:09,607 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-17 00:54:09,610 [ scc.git] DEBUG Already up to date. 2025-09-17 00:54:09,610 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head' 2025-09-17 00:54:09,899 [ scc.git] DEBUG From https://github.com/ome/omero-upload 2025-09-17 00:54:09,899 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD 2025-09-17 00:54:09,903 [ scc.git] DEBUG ## Unique users: [] 2025-09-17 00:54:09,903 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:54:09,903 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:54:09,906 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1a4dbe9a31854f4f65c509ea929debf3319ba1ea' 2025-09-17 00:54:09,909 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:54:09,911 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 1a4dbe9a31854f4f65c509ea929debf3319ba1ea' 2025-09-17 00:54:09,918 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-17 00:54:09,921 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-09-17 00:54:09,921 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-09-17 00:54:10,076 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:54:10,077 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-17 00:54:10,119 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:54:10,119 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:54:10,122 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-17 00:54:10,163 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-17 00:54:10,166 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7500b2e790> has no local changes 2025-09-17 00:54:10,166 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-upload Already up to date. Merged PRs: - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#534 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/534/)' 2025-09-17 00:54:10,173 [ scc.git] DEBUG [detached HEAD 6d32c97] merge master -Dorg -Ssuccess-only 2025-09-17 00:54:10,173 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:54:10,173 [ scc.repo] DEBUG ## PRs found: 2025-09-17 00:54:10,590 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 None 2025-09-17 00:54:11,084 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/issues/22 HTTP/1.1" 200 None 2025-09-17 00:54:11,085 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-17 00:54:11,646 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None 2025-09-17 00:54:12,183 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:54:12,648 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-17 00:54:13,122 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None 2025-09-17 00:54:13,544 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/statuses/2ee819462af52bf2878fadf06d6ebdbafb8f1902?per_page=1 HTTP/1.1" 200 2 2025-09-17 00:54:13,544 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-17 00:54:13,544 [ scc.repo] DEBUG ## Branches found: 2025-09-17 00:54:13,544 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope 2025-09-17 00:54:13,544 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:54:13,544 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:54:13,547 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-17 00:54:13,550 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-17 00:54:13,550 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-17 00:54:13,553 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-17 00:54:13,561 [ scc.git] DEBUG Updating deab817..160d894 2025-09-17 00:54:14,341 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None 2025-09-17 00:54:14,342 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head' 2025-09-17 00:54:14,657 [ scc.git] DEBUG From https://github.com/ome/omero-virtual-microscope 2025-09-17 00:54:14,657 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD 2025-09-17 00:54:14,661 [ scc.git] DEBUG ## Unique users: [] 2025-09-17 00:54:14,661 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:54:14,662 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:54:14,664 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee819462af52bf2878fadf06d6ebdbafb8f1902' 2025-09-17 00:54:14,667 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:54:14,669 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 2ee819462af52bf2878fadf06d6ebdbafb8f1902' 2025-09-17 00:54:14,855 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-17 00:54:14,858 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-09-17 00:54:14,858 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-09-17 00:54:15,022 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:54:15,022 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-17 00:54:15,064 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:54:15,064 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:54:15,066 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-17 00:54:15,106 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-17 00:54:15,110 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7500bb8d90> has no local changes 2025-09-17 00:54:15,110 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-virtual-microscope Updating deab817..160d894 Previously merged: - PR 20 jburel 'Build' Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#534 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/534/)' 2025-09-17 00:54:15,116 [ scc.git] DEBUG [detached HEAD 59423aa] merge master -Dorg -Ssuccess-only 2025-09-17 00:54:15,117 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:54:15,117 [ scc.git] INFO Overriding base-branch from master to main 2025-09-17 00:54:15,117 [ scc.repo] DEBUG ## PRs found: 2025-09-17 00:54:15,558 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None 2025-09-17 00:54:16,036 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None 2025-09-17 00:54:16,477 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21/comments HTTP/1.1" 200 None 2025-09-17 00:54:17,028 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None 2025-09-17 00:54:17,526 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:54:18,010 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-17 00:54:18,528 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None 2025-09-17 00:54:18,956 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/d07067753650282c9e8cdbbeae37897b7ed0d4cc?per_page=1 HTTP/1.1" 200 2 2025-09-17 00:54:18,956 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import' 2025-09-17 00:54:19,427 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None 2025-09-17 00:54:19,983 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None 2025-09-17 00:54:20,432 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None 2025-09-17 00:54:20,936 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None 2025-09-17 00:54:21,426 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:54:21,857 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None 2025-09-17 00:54:22,282 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2 2025-09-17 00:54:22,282 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' 2025-09-17 00:54:22,283 [ scc.repo] DEBUG ## Branches found: 2025-09-17 00:54:22,283 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr 2025-09-17 00:54:22,283 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:54:22,283 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:54:22,286 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main' 2025-09-17 00:54:22,288 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-17 00:54:22,288 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main' 2025-09-17 00:54:22,292 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main' 2025-09-17 00:54:22,299 [ scc.git] DEBUG Updating 8f3c313..00e0207 2025-09-17 00:54:22,950 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/20 HTTP/1.1" 200 None 2025-09-17 00:54:22,951 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head' 2025-09-17 00:54:23,305 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr 2025-09-17 00:54:23,305 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD 2025-09-17 00:54:23,309 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head' 2025-09-17 00:54:24,163 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr 2025-09-17 00:54:24,163 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD 2025-09-17 00:54:24,167 [ scc.git] DEBUG ## Unique users: [] 2025-09-17 00:54:24,167 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:54:24,168 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:54:24,170 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8' 2025-09-17 00:54:24,173 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:54:24,176 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8' 2025-09-17 00:54:24,271 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py 2025-09-17 00:54:24,271 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py 2025-09-17 00:54:24,271 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py 2025-09-17 00:54:24,271 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-09-17 00:54:24,272 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-09-17 00:54:24,274 [ scc.git] DEBUG Calling 'git reset --hard 00e02072dc29b04eba14c080ca8a0175a1499c15' 2025-09-17 00:54:24,279 [ scc.git] DEBUG HEAD is now at 00e0207 Merge pull request #20 from will-moore/zarr_python_v3 2025-09-17 00:54:24,439 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:54:24,439 [ scc.git] DEBUG Calling 'git merge-base 00e02072dc29b04eba14c080ca8a0175a1499c15 85cf4c893f393da6763bf4cee2a308832a41a9e8' 2025-09-17 00:54:24,443 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..00e02072dc29b04eba14c080ca8a0175a1499c15' 2025-09-17 00:54:24,446 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' Conflicting PR. Removed from build [OMERO-plugins-push#534](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/534/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/534/consoleText) for more details. Possible conflicts: - Upstream changes - omero_web_zarr/urls.py --conflicts 2025-09-17 00:54:24,448 [ scc.config] DEBUG Found github.token 2025-09-17 00:54:24,448 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts. 2025-09-17 00:54:24,448 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d07067753650282c9e8cdbbeae37897b7ed0d4cc' 2025-09-17 00:54:24,452 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:54:24,454 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) d07067753650282c9e8cdbbeae37897b7ed0d4cc' 2025-09-17 00:54:24,474 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py 2025-09-17 00:54:24,475 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-17 00:54:24,479 [ scc.git] DEBUG README.rst | 3 + 2025-09-17 00:54:24,479 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++ 2025-09-17 00:54:24,479 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 + 2025-09-17 00:54:24,479 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++- 2025-09-17 00:54:24,479 [ scc.git] DEBUG setup.py | 5 +- 2025-09-17 00:54:24,479 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-) 2025-09-17 00:54:24,479 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html 2025-09-17 00:54:24,827 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:54:24,828 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-17 00:54:24,871 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:54:24,871 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:54:24,874 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-17 00:54:24,915 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-17 00:54:24,919 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7500b8f650> has no local changes 2025-09-17 00:54:24,919 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-web-zarr Excluded PRs: - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft) Updating 8f3c313..00e0207 Previously merged: - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints' Merged PRs: - PR 21 will-moore 'Web zarr import' Conflicting PRs (not included): - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' Generated by OMERO-plugins-push#534 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/534/)' 2025-09-17 00:54:24,926 [ scc.git] DEBUG [detached HEAD 8d7b894] merge master -Dorg -Ssuccess-only 2025-09-17 00:54:24,926 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:54:24,926 [ scc.repo] DEBUG ## PRs found: 2025-09-17 00:54:25,312 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 None 2025-09-17 00:54:25,806 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/issues/25 HTTP/1.1" 200 None 2025-09-17 00:54:25,807 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-17 00:54:26,406 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None 2025-09-17 00:54:26,929 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:54:27,463 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-17 00:54:28,013 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None 2025-09-17 00:54:28,446 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/statuses/c73bedb717b9ecce0af666245d3486aa5a2dafe9?per_page=1 HTTP/1.1" 200 2 2025-09-17 00:54:28,446 [ scc.repo] DEBUG - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-17 00:54:28,446 [ scc.repo] DEBUG ## Branches found: 2025-09-17 00:54:28,447 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror 2025-09-17 00:54:28,447 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:54:28,447 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:54:28,450 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-17 00:54:28,452 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-17 00:54:28,452 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-17 00:54:28,455 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-17 00:54:28,458 [ scc.git] DEBUG Already up to date. 2025-09-17 00:54:28,458 [ scc.git] DEBUG Calling 'git fetch origin pull/25/head' 2025-09-17 00:54:28,772 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-weberror 2025-09-17 00:54:28,772 [ scc.git] DEBUG * branch refs/pull/25/head -> FETCH_HEAD 2025-09-17 00:54:28,777 [ scc.git] DEBUG ## Unique users: [] 2025-09-17 00:54:28,777 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:54:28,777 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:54:28,779 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c73bedb717b9ecce0af666245d3486aa5a2dafe9' 2025-09-17 00:54:28,782 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:54:28,785 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) c73bedb717b9ecce0af666245d3486aa5a2dafe9' 2025-09-17 00:54:28,792 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-17 00:54:28,795 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-09-17 00:54:28,795 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-09-17 00:54:28,942 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:54:28,943 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-17 00:54:28,984 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:54:28,984 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:54:28,986 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-17 00:54:29,028 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-17 00:54:29,031 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7501bfcc50> has no local changes 2025-09-17 00:54:29,032 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: openmicroscopy/omero-weberror Already up to date. Merged PRs: - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#534 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/534/)' 2025-09-17 00:54:29,038 [ scc.git] DEBUG [detached HEAD 3a4fa31] merge master -Dorg -Ssuccess-only 2025-09-17 00:54:29,039 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:54:29,039 [ scc.repo] DEBUG ## PRs found: 2025-09-17 00:54:29,466 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 None 2025-09-17 00:54:29,933 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/issues/37 HTTP/1.1" 200 None 2025-09-17 00:54:29,933 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-17 00:54:30,569 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None 2025-09-17 00:54:31,113 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:54:31,642 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-17 00:54:32,109 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None 2025-09-17 00:54:32,523 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/statuses/8cf5f7e65ae8e945b134e41e77bc13a785aff478?per_page=1 HTTP/1.1" 200 2 2025-09-17 00:54:32,523 [ scc.repo] DEBUG - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-17 00:54:32,523 [ scc.repo] DEBUG ## Branches found: 2025-09-17 00:54:32,523 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest 2025-09-17 00:54:32,524 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:54:32,524 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:54:32,526 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-17 00:54:32,529 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-17 00:54:32,529 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-17 00:54:32,532 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-17 00:54:32,535 [ scc.git] DEBUG Already up to date. 2025-09-17 00:54:32,536 [ scc.git] DEBUG Calling 'git fetch origin pull/37/head' 2025-09-17 00:54:32,850 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-webtest 2025-09-17 00:54:32,850 [ scc.git] DEBUG * branch refs/pull/37/head -> FETCH_HEAD 2025-09-17 00:54:32,855 [ scc.git] DEBUG ## Unique users: [] 2025-09-17 00:54:32,855 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:54:32,855 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:54:32,857 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8cf5f7e65ae8e945b134e41e77bc13a785aff478' 2025-09-17 00:54:32,860 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:54:32,862 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 37 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8cf5f7e65ae8e945b134e41e77bc13a785aff478' 2025-09-17 00:54:32,870 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-17 00:54:32,873 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-09-17 00:54:32,873 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-09-17 00:54:33,023 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:54:33,024 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-17 00:54:33,065 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:54:33,065 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:54:33,068 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-17 00:54:33,108 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-17 00:54:33,112 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7500bd97d0> has no local changes 2025-09-17 00:54:33,112 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: openmicroscopy/omero-webtest Already up to date. Merged PRs: - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#534 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/534/)' 2025-09-17 00:54:33,119 [ scc.git] DEBUG [detached HEAD bd23b6f] merge master -Dorg -Ssuccess-only 2025-09-17 00:54:33,119 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:54:33,119 [ scc.repo] DEBUG ## PRs found: 2025-09-17 00:54:33,550 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 None 2025-09-17 00:54:34,018 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100 HTTP/1.1" 200 None 2025-09-17 00:54:34,462 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100/comments HTTP/1.1" 200 None 2025-09-17 00:54:35,008 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None 2025-09-17 00:54:35,511 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:54:36,064 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None 2025-09-17 00:54:36,481 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/statuses/b4abacf0cb9b7aee150761d320bdbb80762cd6e7?per_page=1 HTTP/1.1" 200 2 2025-09-17 00:54:36,481 [ scc.repo] DEBUG - PR 100 dominikl 'Run tests properly' 2025-09-17 00:54:36,481 [ scc.repo] DEBUG ## Branches found: 2025-09-17 00:54:36,482 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway 2025-09-17 00:54:36,482 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:54:36,482 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:54:36,485 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-17 00:54:36,487 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-17 00:54:36,487 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-17 00:54:36,490 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-17 00:54:36,493 [ scc.git] DEBUG Already up to date. 2025-09-17 00:54:36,493 [ scc.git] DEBUG Calling 'git fetch origin pull/100/head' 2025-09-17 00:54:36,912 [ scc.git] DEBUG From https://github.com/ome/rOMERO-gateway 2025-09-17 00:54:36,912 [ scc.git] DEBUG * branch refs/pull/100/head -> FETCH_HEAD 2025-09-17 00:54:36,917 [ scc.git] DEBUG ## Unique users: [] 2025-09-17 00:54:36,918 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:54:36,918 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:54:36,921 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b4abacf0cb9b7aee150761d320bdbb80762cd6e7' 2025-09-17 00:54:36,924 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:54:36,926 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 100 (Run tests properly) b4abacf0cb9b7aee150761d320bdbb80762cd6e7' 2025-09-17 00:54:37,105 [ scc.git] DEBUG Auto-merging Dockerfile 2025-09-17 00:54:37,105 [ scc.git] DEBUG CONFLICT (content): Merge conflict in Dockerfile 2025-09-17 00:54:37,105 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-09-17 00:54:37,105 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-09-17 00:54:37,109 [ scc.git] DEBUG Calling 'git reset --hard 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9' 2025-09-17 00:54:37,115 [ scc.git] DEBUG HEAD is now at 7b5d64d Merge pull request #106 from dominikl/add_examples_2 2025-09-17 00:54:37,386 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:54:37,387 [ scc.git] DEBUG Calling 'git merge-base 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 b4abacf0cb9b7aee150761d320bdbb80762cd6e7' 2025-09-17 00:54:37,390 [ scc.git] DEBUG Calling 'git diff --name-only 8b424d2d21f70d07729c4da38a9241b9a9f483be..7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9' 2025-09-17 00:54:37,393 [ scc.git] INFO - PR 100 dominikl 'Run tests properly' Conflicting PR. Removed from build [OMERO-plugins-push#534](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/534/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/534/consoleText) for more details. Possible conflicts: - Upstream changes - Dockerfile --conflicts 2025-09-17 00:54:37,396 [ scc.config] DEBUG Found github.token 2025-09-17 00:54:37,396 [ scc.git] DEBUG Not adding comment to issue #100, already --conflicts. 2025-09-17 00:54:37,396 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-17 00:54:37,439 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:54:37,439 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:54:37,442 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-17 00:54:37,483 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-17 00:54:37,488 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7500b55850> has no local changes 2025-09-17 00:54:37,488 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/rOMERO-gateway Already up to date. Conflicting PRs (not included): - PR 100 dominikl 'Run tests properly' Generated by OMERO-plugins-push#534 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/534/)' 2025-09-17 00:54:37,495 [ scc.git] DEBUG [detached HEAD a856b1c] merge master -Dorg -Ssuccess-only 2025-09-17 00:54:37,496 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:54:37,496 [ scc.git] INFO Overriding base-branch from master to develop 2025-09-17 00:54:37,496 [ scc.repo] DEBUG ## PRs found: 2025-09-17 00:54:37,935 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None 2025-09-17 00:54:38,410 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223 HTTP/1.1" 200 None 2025-09-17 00:54:38,878 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223/comments HTTP/1.1" 200 None 2025-09-17 00:54:39,326 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None 2025-09-17 00:54:39,832 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:54:40,310 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-17 00:54:40,784 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None 2025-09-17 00:54:41,202 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/d8b2bbd6f5066de883a41ba5338662d60472b0d8?per_page=1 HTTP/1.1" 200 2 2025-09-17 00:54:41,203 [ scc.repo] DEBUG - PR 223 will-moore 'don't attempt ROI stats on big images' 2025-09-17 00:54:41,723 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202 HTTP/1.1" 200 None 2025-09-17 00:54:42,183 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202/comments HTTP/1.1" 200 None 2025-09-17 00:54:42,620 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None 2025-09-17 00:54:43,080 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-17 00:54:43,559 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None 2025-09-17 00:54:43,994 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/1fd6030669613cdb8879cfe6395db8c820fdcf19?per_page=1 HTTP/1.1" 200 2 2025-09-17 00:54:43,995 [ scc.repo] DEBUG - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py' 2025-09-17 00:54:44,530 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None 2025-09-17 00:54:44,977 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None 2025-09-17 00:54:45,428 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103 HTTP/1.1" 200 None 2025-09-17 00:54:45,961 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103/comments HTTP/1.1" 200 None 2025-09-17 00:54:45,963 [ scc.repo] DEBUG ## Branches found: 2025-09-17 00:54:45,963 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts 2025-09-17 00:54:45,963 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:54:45,963 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:54:45,966 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop' 2025-09-17 00:54:45,969 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-17 00:54:45,969 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop' 2025-09-17 00:54:45,972 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop' 2025-09-17 00:54:45,983 [ scc.git] DEBUG Updating 4b4c755..03b9116 2025-09-17 00:54:46,595 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/228 HTTP/1.1" 200 None 2025-09-17 00:54:47,285 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None 2025-09-17 00:54:47,937 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None 2025-09-17 00:54:47,938 [ scc.git] DEBUG Calling 'git fetch origin pull/202/head' 2025-09-17 00:54:48,815 [ scc.git] DEBUG From https://github.com/ome/scripts 2025-09-17 00:54:48,815 [ scc.git] DEBUG * branch refs/pull/202/head -> FETCH_HEAD 2025-09-17 00:54:48,820 [ scc.git] DEBUG Calling 'git fetch origin pull/223/head' 2025-09-17 00:54:49,446 [ scc.git] DEBUG From https://github.com/ome/scripts 2025-09-17 00:54:49,446 [ scc.git] DEBUG * branch refs/pull/223/head -> FETCH_HEAD 2025-09-17 00:54:49,450 [ scc.git] DEBUG ## Unique users: [] 2025-09-17 00:54:49,450 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:54:49,450 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:54:49,453 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1fd6030669613cdb8879cfe6395db8c820fdcf19' 2025-09-17 00:54:49,459 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:54:49,461 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 202 (Add Plate support to KeyVal_to_csv.py) 1fd6030669613cdb8879cfe6395db8c820fdcf19' 2025-09-17 00:54:49,562 [ scc.git] DEBUG CONFLICT (modify/delete): omero/annotation_scripts/KeyVal_to_csv.py deleted in HEAD and modified in 1fd6030669613cdb8879cfe6395db8c820fdcf19. Version 1fd6030669613cdb8879cfe6395db8c820fdcf19 of omero/annotation_scripts/KeyVal_to_csv.py left in tree. 2025-09-17 00:54:49,563 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-09-17 00:54:49,563 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-09-17 00:54:49,565 [ scc.git] DEBUG Calling 'git reset --hard 03b9116196e1a799dd18a666559613d912be01a5' 2025-09-17 00:54:49,570 [ scc.git] DEBUG HEAD is now at 03b9116 Merge pull request #228 from ome/dependabot/github_actions/dot-github/workflows/pypa/gh-action-pypi-publish-1.13.0 2025-09-17 00:54:49,720 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:54:49,721 [ scc.git] DEBUG Calling 'git merge-base 03b9116196e1a799dd18a666559613d912be01a5 1fd6030669613cdb8879cfe6395db8c820fdcf19' 2025-09-17 00:54:49,727 [ scc.git] DEBUG Calling 'git diff --name-only a90f59802f6752ad74badec5c0c1d6b0c9c43b15..03b9116196e1a799dd18a666559613d912be01a5' 2025-09-17 00:54:49,731 [ scc.git] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py' Conflicting PR. Removed from build [OMERO-plugins-push#534](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/534/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/534/consoleText) for more details. Possible conflicts: - Upstream changes - omero/annotation_scripts/KeyVal_to_csv.py --conflicts 2025-09-17 00:54:49,733 [ scc.config] DEBUG Found github.token 2025-09-17 00:54:49,733 [ scc.git] DEBUG Not adding comment to issue #202, already --conflicts. 2025-09-17 00:54:49,733 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d8b2bbd6f5066de883a41ba5338662d60472b0d8' 2025-09-17 00:54:49,738 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:54:49,741 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 223 (don't attempt ROI stats on big images) d8b2bbd6f5066de883a41ba5338662d60472b0d8' 2025-09-17 00:54:49,750 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-17 00:54:49,753 [ scc.git] DEBUG omero/export_scripts/Batch_ROI_Export.py | 9 ++++++++- 2025-09-17 00:54:49,753 [ scc.git] DEBUG 1 file changed, 8 insertions(+), 1 deletion(-) 2025-09-17 00:54:50,144 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:54:50,145 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-17 00:54:50,185 [ scc.git] DEBUG Get sha1 of %s 2025-09-17 00:54:50,185 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-17 00:54:50,188 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-17 00:54:50,228 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-17 00:54:50,232 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7500badb10> has no local changes 2025-09-17 00:54:50,232 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/scripts Excluded PRs: - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn) - PR 103 joshmoore 'Script for calculating min/max' (exclude comment) Updating 4b4c755..03b9116 Previously merged: - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows' - PR 227 jburel 'Replace tostring by tobytes' - PR 225 will-moore 'Fix param names and assertion texts in tests' Merged PRs: - PR 223 will-moore 'don't attempt ROI stats on big images' Conflicting PRs (not included): - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py' Generated by OMERO-plugins-push#534 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/534/)' 2025-09-17 00:54:50,238 [ scc.git] DEBUG [detached HEAD 9a8bff7] merge master -Dorg -Ssuccess-only 2025-09-17 00:54:50,239 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:54:50,239 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-17 00:54:50,317 [ scc.config] DEBUG Found submodule.minimal-omero-client.url 2025-09-17 00:54:50,569 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:54:50,575 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch 2025-09-17 00:54:50,577 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url 2025-09-17 00:54:50,982 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:54:50,987 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch 2025-09-17 00:54:50,989 [ scc.config] DEBUG Found submodule.omero-cli-render.url 2025-09-17 00:54:51,369 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:54:51,374 [ scc.config] DEBUG Found submodule.omero-cli-render.branch 2025-09-17 00:54:51,376 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url 2025-09-17 00:54:51,758 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:54:51,765 [ scc.config] DEBUG Found submodule.omero-figure.url 2025-09-17 00:54:52,151 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:54:52,156 [ scc.config] DEBUG Found submodule.omero-figure.branch 2025-09-17 00:54:52,158 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url 2025-09-17 00:54:52,562 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:54:52,567 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch 2025-09-17 00:54:52,569 [ scc.config] DEBUG Found submodule.omero-gallery.url 2025-09-17 00:54:52,960 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:54:52,965 [ scc.config] DEBUG Found submodule.omero-gallery.branch 2025-09-17 00:54:52,968 [ scc.config] DEBUG Found submodule.omero-iviewer.url 2025-09-17 00:54:53,344 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:54:53,348 [ scc.config] DEBUG Found submodule.omero-iviewer.branch 2025-09-17 00:54:53,351 [ scc.config] DEBUG Found submodule.omero-mapr.url 2025-09-17 00:54:53,736 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:54:53,741 [ scc.config] DEBUG Found submodule.omero-mapr.branch 2025-09-17 00:54:53,743 [ scc.config] DEBUG Found submodule.omero-metadata.url 2025-09-17 00:54:54,121 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:54:54,126 [ scc.config] DEBUG Found submodule.omero-metadata.branch 2025-09-17 00:54:54,128 [ scc.config] DEBUG Found submodule.omero-parade.url 2025-09-17 00:54:54,549 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:54:54,554 [ scc.config] DEBUG Found submodule.omero-parade.branch 2025-09-17 00:54:54,556 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url 2025-09-17 00:54:54,952 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:54:54,957 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch 2025-09-17 00:54:54,959 [ scc.config] DEBUG Found submodule.omero-rois.url 2025-09-17 00:54:55,362 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:54:55,369 [ scc.config] DEBUG Found submodule.omero-signup.url 2025-09-17 00:54:55,783 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:54:55,790 [ scc.config] DEBUG Found submodule.omero-test-infra.url 2025-09-17 00:54:56,188 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:54:56,193 [ scc.config] DEBUG Found submodule.omero-test-infra.branch 2025-09-17 00:54:56,195 [ scc.config] DEBUG Found submodule.omero-upload.url 2025-09-17 00:54:56,599 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:54:56,606 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url 2025-09-17 00:54:56,995 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:54:57,002 [ scc.config] DEBUG Found submodule.omero-web-zarr.url 2025-09-17 00:54:57,388 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:54:57,392 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch 2025-09-17 00:54:57,394 [ scc.config] DEBUG Found submodule.omero-weberror.url 2025-09-17 00:54:57,782 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:54:57,787 [ scc.config] DEBUG Found submodule.omero-weberror.branch 2025-09-17 00:54:57,789 [ scc.config] DEBUG Found submodule.omero-webtest.url 2025-09-17 00:54:58,182 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:54:58,187 [ scc.config] DEBUG Found submodule.omero-webtest.branch 2025-09-17 00:54:58,189 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url 2025-09-17 00:54:58,577 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:54:58,582 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch 2025-09-17 00:54:58,584 [ scc.config] DEBUG Found submodule.scripts.url 2025-09-17 00:54:58,979 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-17 00:54:58,984 [ scc.config] DEBUG Found submodule.scripts.branch 2025-09-17 00:54:58,984 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-17 00:54:59,082 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7501d411d0> has local changes 2025-09-17 00:54:59,082 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-plugins Already up to date. Merged PRs: - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' Repository: ome/minimal-omero-client Already up to date. Repository: ome/omero-cli-duplicate Excluded PRs: - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment) Already up to date. Merged PRs: - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-cli-render Excluded PRs: - PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft) - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft) Already up to date. Merged PRs: - PR 59 will-moore 'Apply settings to Plate' - PR 69 dominikl 'Fix help text for impo/export commands' - PR 71 dominikl 'Escape slash character in image names' - PR 73 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-cli-zarr Excluded PRs: - PR 174 will-moore 'Skip wells' (stage: draft) - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (exclude comment) - PR 170 will-moore 'Use ome zarr models py' (stage: draft) - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft) - PR 167 dominikl 'Add extinfo command' (stage: draft) - PR 166 will-moore 'Downsample scale option' (stage: draft) - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment) Updating 11d3587..f7eea7c Previously merged: - PR 179 will-moore 'Changelog 0.6.0' - PR 177 jburel 'Replace fromstring by frombuffer' - PR 175 will-moore 'Pin ome-zarr-py <0.12.0' - PR 147 will-moore 'Name option' - PR 173 will-moore 'Add test_export_plate_polygons()' - PR 171 will-moore 'Initial addition of integration tests' - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' - PR 180 will-moore 'Import command' Repository: ome/omero-figure Excluded PRs: - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier) - PR 619 will-moore 'OME-Zarr support' (stage: draft) - PR 543 will-moore 'Plate well labels' (exclude comment) Updating 9cc36cde..66607c99 Previously merged: - PR 605 Tom-TBT 'Colorbar feature' - PR 638 Rdornier 'Fix arrow opacity' - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4' - PR 635 dependabot[bot] 'Bump esbuild and vite' - PR 623 will-moore 'Fix wrapping of label X button. see issues/622' - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 600 Rdornier 'Label on rois' - PR 610 will-moore 'Add docs/contributing.rst' - PR 612 will-moore 'Script version' - PR 616 Rdornier 'Fix labels around border' Conflicting PRs (not included): - PR 630 will-moore 'Fix color and position for ALL new panel insets' - PR 637 Rdornier 'Fix scalebar position' - PR 642 dependabot[bot] 'Bump vite from 6.2.6 to 6.3.6' Repository: ome/omero-fpbioimage Already up to date. Merged PRs: - PR 18 jburel 'default size z value' - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-gallery Already up to date. Merged PRs: - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - PR 114 dependabot[bot] 'Bump tar and fsevents' - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' Conflicting PRs (not included): - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' Repository: ome/omero-iviewer Excluded PRs: - PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft) - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft) - PR 420 will-moore 'Add release process to README' (exclude comment) - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment) - PR 227 will-moore 'Vectortile investigation' (status: failure) Updating 7a798ce..bb94cf8 Previously merged: - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 460 will-moore 'Channel min spinner fix' - PR 465 will-moore 'Save as Figure' - PR 471 will-moore 'Z projection disabled tooltip' - PR 499 dependabot[bot] 'Bump nanoid and mocha' Conflicting PRs (not included): - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha' Repository: ome/omero-mapr Excluded PRs: - PR 79 will-moore 'Right panel title' (exclude comment) Already up to date. Merged PRs: - PR 74 will-moore 'mapr extension of webclient' - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Conflicting PRs (not included): - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-metadata Updating 3cd120c..55060a2 Previously merged: - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Conflicting PRs (not included): - PR 55 kkoz 'Prevent users from creating columns with python keyword names' - PR 64 will-moore 'Support images_by_name for Screen and Plate' Repository: ome/omero-parade Excluded PRs: - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft) - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment) - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment) - PR 39 chris-allan 'Expand all for Screens' (exclude comment) Already up to date. Merged PRs: - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Repository: ome/omero-prometheus-tools Already up to date. Merged PRs: - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-rois Excluded PRs: - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) Already up to date. Merged PRs: - PR 33 jo-mueller 'Add roi to array functions' - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-signup Already up to date. Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Conflicting PRs (not included): - PR 14 manics 'Add pre-commit (black, flake8)' Repository: openmicroscopy/omero-test-infra Excluded PRs: - PR 75 marimeireles 'Microservices' (user: marimeireles) - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure) - PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles) Already up to date. Merged PRs: - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra' - PR 76 will-moore 'Run cli deps' Repository: ome/omero-upload Already up to date. Merged PRs: - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-virtual-microscope Updating deab817..160d894 Previously merged: - PR 20 jburel 'Build' Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-web-zarr Excluded PRs: - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft) Updating 8f3c313..00e0207 Previously merged: - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints' Merged PRs: - PR 21 will-moore 'Web zarr import' Conflicting PRs (not included): - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' Repository: openmicroscopy/omero-weberror Already up to date. Merged PRs: - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: openmicroscopy/omero-webtest Already up to date. Merged PRs: - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/rOMERO-gateway Already up to date. Conflicting PRs (not included): - PR 100 dominikl 'Run tests properly' Repository: ome/scripts Excluded PRs: - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn) - PR 103 joshmoore 'Script for calculating min/max' (exclude comment) Updating 4b4c755..03b9116 Previously merged: - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows' - PR 227 jburel 'Replace tostring by tobytes' - PR 225 will-moore 'Fix param names and assertion texts in tests' Merged PRs: - PR 223 will-moore 'don't attempt ROI stats on big images' Conflicting PRs (not included): - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py' Generated by OMERO-plugins-push#534 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/534/)' 2025-09-17 00:54:59,096 [ scc.git] DEBUG [detached HEAD d3bfa51] merge master -Dorg -Ssuccess-only 2025-09-17 00:54:59,096 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-) 2025-09-17 00:54:59,096 [ scc.merge] INFO Repository: ome/omero-plugins 2025-09-17 00:54:59,096 [ scc.merge] INFO Already up to date. 2025-09-17 00:54:59,096 [ scc.merge] INFO 2025-09-17 00:54:59,096 [ scc.merge] INFO Merged PRs: 2025-09-17 00:54:59,096 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2025-09-17 00:54:59,096 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2025-09-17 00:54:59,096 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2025-09-17 00:54:59,097 [ scc.merge] INFO 2025-09-17 00:54:59,097 [ scc.merge] INFO Repository: ome/minimal-omero-client 2025-09-17 00:54:59,097 [ scc.merge] INFO Already up to date. 2025-09-17 00:54:59,097 [ scc.merge] INFO 2025-09-17 00:54:59,097 [ scc.merge] INFO 2025-09-17 00:54:59,097 [ scc.merge] INFO Repository: ome/omero-cli-duplicate 2025-09-17 00:54:59,097 [ scc.merge] INFO Excluded PRs: 2025-09-17 00:54:59,097 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment) 2025-09-17 00:54:59,097 [ scc.merge] INFO Already up to date. 2025-09-17 00:54:59,097 [ scc.merge] INFO 2025-09-17 00:54:59,097 [ scc.merge] INFO Merged PRs: 2025-09-17 00:54:59,097 [ scc.merge] INFO - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-17 00:54:59,097 [ scc.merge] INFO 2025-09-17 00:54:59,097 [ scc.merge] INFO Repository: ome/omero-cli-render 2025-09-17 00:54:59,097 [ scc.merge] INFO Excluded PRs: 2025-09-17 00:54:59,097 [ scc.merge] INFO - PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft) 2025-09-17 00:54:59,097 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft) 2025-09-17 00:54:59,097 [ scc.merge] INFO Already up to date. 2025-09-17 00:54:59,097 [ scc.merge] INFO 2025-09-17 00:54:59,097 [ scc.merge] INFO Merged PRs: 2025-09-17 00:54:59,097 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate' 2025-09-17 00:54:59,097 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands' 2025-09-17 00:54:59,097 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names' 2025-09-17 00:54:59,097 [ scc.merge] INFO - PR 73 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-17 00:54:59,097 [ scc.merge] INFO 2025-09-17 00:54:59,097 [ scc.merge] INFO Repository: ome/omero-cli-zarr 2025-09-17 00:54:59,097 [ scc.merge] INFO Excluded PRs: 2025-09-17 00:54:59,097 [ scc.merge] INFO - PR 174 will-moore 'Skip wells' (stage: draft) 2025-09-17 00:54:59,097 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (exclude comment) 2025-09-17 00:54:59,097 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft) 2025-09-17 00:54:59,097 [ scc.merge] INFO - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft) 2025-09-17 00:54:59,097 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft) 2025-09-17 00:54:59,097 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft) 2025-09-17 00:54:59,097 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) 2025-09-17 00:54:59,097 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment) 2025-09-17 00:54:59,097 [ scc.merge] INFO Updating 11d3587..f7eea7c 2025-09-17 00:54:59,097 [ scc.merge] INFO Previously merged: 2025-09-17 00:54:59,097 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0' 2025-09-17 00:54:59,097 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer' 2025-09-17 00:54:59,097 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0' 2025-09-17 00:54:59,098 [ scc.merge] INFO - PR 147 will-moore 'Name option' 2025-09-17 00:54:59,098 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()' 2025-09-17 00:54:59,098 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests' 2025-09-17 00:54:59,098 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2025-09-17 00:54:59,098 [ scc.merge] INFO 2025-09-17 00:54:59,098 [ scc.merge] INFO Merged PRs: 2025-09-17 00:54:59,098 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' 2025-09-17 00:54:59,098 [ scc.merge] INFO - PR 180 will-moore 'Import command' 2025-09-17 00:54:59,098 [ scc.merge] INFO 2025-09-17 00:54:59,098 [ scc.merge] INFO Repository: ome/omero-figure 2025-09-17 00:54:59,098 [ scc.merge] INFO Excluded PRs: 2025-09-17 00:54:59,098 [ scc.merge] INFO - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier) 2025-09-17 00:54:59,098 [ scc.merge] INFO - PR 619 will-moore 'OME-Zarr support' (stage: draft) 2025-09-17 00:54:59,098 [ scc.merge] INFO - PR 543 will-moore 'Plate well labels' (exclude comment) 2025-09-17 00:54:59,098 [ scc.merge] INFO Updating 9cc36cde..66607c99 2025-09-17 00:54:59,098 [ scc.merge] INFO Previously merged: 2025-09-17 00:54:59,098 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature' 2025-09-17 00:54:59,098 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity' 2025-09-17 00:54:59,098 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4' 2025-09-17 00:54:59,098 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite' 2025-09-17 00:54:59,098 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622' 2025-09-17 00:54:59,098 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2025-09-17 00:54:59,098 [ scc.merge] INFO 2025-09-17 00:54:59,098 [ scc.merge] INFO Merged PRs: 2025-09-17 00:54:59,098 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois' 2025-09-17 00:54:59,098 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst' 2025-09-17 00:54:59,098 [ scc.merge] INFO - PR 612 will-moore 'Script version' 2025-09-17 00:54:59,098 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border' 2025-09-17 00:54:59,098 [ scc.merge] INFO 2025-09-17 00:54:59,098 [ scc.merge] INFO Conflicting PRs (not included): 2025-09-17 00:54:59,098 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets' 2025-09-17 00:54:59,098 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position' 2025-09-17 00:54:59,098 [ scc.merge] INFO - PR 642 dependabot[bot] 'Bump vite from 6.2.6 to 6.3.6' 2025-09-17 00:54:59,098 [ scc.merge] INFO 2025-09-17 00:54:59,098 [ scc.merge] INFO Repository: ome/omero-fpbioimage 2025-09-17 00:54:59,098 [ scc.merge] INFO Already up to date. 2025-09-17 00:54:59,098 [ scc.merge] INFO 2025-09-17 00:54:59,098 [ scc.merge] INFO Merged PRs: 2025-09-17 00:54:59,098 [ scc.merge] INFO - PR 18 jburel 'default size z value' 2025-09-17 00:54:59,098 [ scc.merge] INFO - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-17 00:54:59,099 [ scc.merge] INFO 2025-09-17 00:54:59,099 [ scc.merge] INFO Repository: ome/omero-gallery 2025-09-17 00:54:59,099 [ scc.merge] INFO Already up to date. 2025-09-17 00:54:59,099 [ scc.merge] INFO 2025-09-17 00:54:59,099 [ scc.merge] INFO Merged PRs: 2025-09-17 00:54:59,099 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' 2025-09-17 00:54:59,099 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents' 2025-09-17 00:54:59,099 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' 2025-09-17 00:54:59,099 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' 2025-09-17 00:54:59,099 [ scc.merge] INFO 2025-09-17 00:54:59,099 [ scc.merge] INFO Conflicting PRs (not included): 2025-09-17 00:54:59,099 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' 2025-09-17 00:54:59,099 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' 2025-09-17 00:54:59,099 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' 2025-09-17 00:54:59,099 [ scc.merge] INFO 2025-09-17 00:54:59,099 [ scc.merge] INFO Repository: ome/omero-iviewer 2025-09-17 00:54:59,099 [ scc.merge] INFO Excluded PRs: 2025-09-17 00:54:59,099 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft) 2025-09-17 00:54:59,099 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft) 2025-09-17 00:54:59,099 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment) 2025-09-17 00:54:59,099 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment) 2025-09-17 00:54:59,099 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure) 2025-09-17 00:54:59,099 [ scc.merge] INFO Updating 7a798ce..bb94cf8 2025-09-17 00:54:59,099 [ scc.merge] INFO Previously merged: 2025-09-17 00:54:59,099 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2025-09-17 00:54:59,099 [ scc.merge] INFO 2025-09-17 00:54:59,099 [ scc.merge] INFO Merged PRs: 2025-09-17 00:54:59,099 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix' 2025-09-17 00:54:59,099 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure' 2025-09-17 00:54:59,099 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip' 2025-09-17 00:54:59,099 [ scc.merge] INFO - PR 499 dependabot[bot] 'Bump nanoid and mocha' 2025-09-17 00:54:59,099 [ scc.merge] INFO 2025-09-17 00:54:59,099 [ scc.merge] INFO Conflicting PRs (not included): 2025-09-17 00:54:59,099 [ scc.merge] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha' 2025-09-17 00:54:59,099 [ scc.merge] INFO 2025-09-17 00:54:59,099 [ scc.merge] INFO Repository: ome/omero-mapr 2025-09-17 00:54:59,099 [ scc.merge] INFO Excluded PRs: 2025-09-17 00:54:59,099 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment) 2025-09-17 00:54:59,099 [ scc.merge] INFO Already up to date. 2025-09-17 00:54:59,099 [ scc.merge] INFO 2025-09-17 00:54:59,099 [ scc.merge] INFO Merged PRs: 2025-09-17 00:54:59,100 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient' 2025-09-17 00:54:59,100 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2025-09-17 00:54:59,100 [ scc.merge] INFO 2025-09-17 00:54:59,100 [ scc.merge] INFO Conflicting PRs (not included): 2025-09-17 00:54:59,100 [ scc.merge] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-17 00:54:59,100 [ scc.merge] INFO 2025-09-17 00:54:59,100 [ scc.merge] INFO Repository: ome/omero-metadata 2025-09-17 00:54:59,100 [ scc.merge] INFO Updating 3cd120c..55060a2 2025-09-17 00:54:59,100 [ scc.merge] INFO Previously merged: 2025-09-17 00:54:59,100 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2025-09-17 00:54:59,100 [ scc.merge] INFO 2025-09-17 00:54:59,100 [ scc.merge] INFO Conflicting PRs (not included): 2025-09-17 00:54:59,100 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names' 2025-09-17 00:54:59,100 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate' 2025-09-17 00:54:59,100 [ scc.merge] INFO 2025-09-17 00:54:59,100 [ scc.merge] INFO Repository: ome/omero-parade 2025-09-17 00:54:59,100 [ scc.merge] INFO Excluded PRs: 2025-09-17 00:54:59,100 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft) 2025-09-17 00:54:59,100 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment) 2025-09-17 00:54:59,100 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment) 2025-09-17 00:54:59,100 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment) 2025-09-17 00:54:59,100 [ scc.merge] INFO Already up to date. 2025-09-17 00:54:59,100 [ scc.merge] INFO 2025-09-17 00:54:59,100 [ scc.merge] INFO Merged PRs: 2025-09-17 00:54:59,100 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' 2025-09-17 00:54:59,100 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' 2025-09-17 00:54:59,100 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2025-09-17 00:54:59,100 [ scc.merge] INFO 2025-09-17 00:54:59,100 [ scc.merge] INFO Repository: ome/omero-prometheus-tools 2025-09-17 00:54:59,100 [ scc.merge] INFO Already up to date. 2025-09-17 00:54:59,100 [ scc.merge] INFO 2025-09-17 00:54:59,100 [ scc.merge] INFO Merged PRs: 2025-09-17 00:54:59,100 [ scc.merge] INFO - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-17 00:54:59,100 [ scc.merge] INFO 2025-09-17 00:54:59,100 [ scc.merge] INFO Repository: ome/omero-rois 2025-09-17 00:54:59,100 [ scc.merge] INFO Excluded PRs: 2025-09-17 00:54:59,100 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) 2025-09-17 00:54:59,100 [ scc.merge] INFO Already up to date. 2025-09-17 00:54:59,100 [ scc.merge] INFO 2025-09-17 00:54:59,100 [ scc.merge] INFO Merged PRs: 2025-09-17 00:54:59,100 [ scc.merge] INFO - PR 33 jo-mueller 'Add roi to array functions' 2025-09-17 00:54:59,101 [ scc.merge] INFO - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-17 00:54:59,101 [ scc.merge] INFO 2025-09-17 00:54:59,101 [ scc.merge] INFO Repository: ome/omero-signup 2025-09-17 00:54:59,101 [ scc.merge] INFO Already up to date. 2025-09-17 00:54:59,101 [ scc.merge] INFO 2025-09-17 00:54:59,101 [ scc.merge] INFO Merged PRs: 2025-09-17 00:54:59,101 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-17 00:54:59,101 [ scc.merge] INFO 2025-09-17 00:54:59,101 [ scc.merge] INFO Conflicting PRs (not included): 2025-09-17 00:54:59,101 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)' 2025-09-17 00:54:59,101 [ scc.merge] INFO 2025-09-17 00:54:59,101 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra 2025-09-17 00:54:59,101 [ scc.merge] INFO Excluded PRs: 2025-09-17 00:54:59,101 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles) 2025-09-17 00:54:59,101 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure) 2025-09-17 00:54:59,101 [ scc.merge] INFO - PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles) 2025-09-17 00:54:59,101 [ scc.merge] INFO Already up to date. 2025-09-17 00:54:59,101 [ scc.merge] INFO 2025-09-17 00:54:59,101 [ scc.merge] INFO Merged PRs: 2025-09-17 00:54:59,101 [ scc.merge] INFO - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra' 2025-09-17 00:54:59,101 [ scc.merge] INFO - PR 76 will-moore 'Run cli deps' 2025-09-17 00:54:59,101 [ scc.merge] INFO 2025-09-17 00:54:59,101 [ scc.merge] INFO Repository: ome/omero-upload 2025-09-17 00:54:59,101 [ scc.merge] INFO Already up to date. 2025-09-17 00:54:59,101 [ scc.merge] INFO 2025-09-17 00:54:59,101 [ scc.merge] INFO Merged PRs: 2025-09-17 00:54:59,101 [ scc.merge] INFO - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-17 00:54:59,101 [ scc.merge] INFO 2025-09-17 00:54:59,101 [ scc.merge] INFO Repository: ome/omero-virtual-microscope 2025-09-17 00:54:59,101 [ scc.merge] INFO Updating deab817..160d894 2025-09-17 00:54:59,101 [ scc.merge] INFO Previously merged: 2025-09-17 00:54:59,101 [ scc.merge] INFO - PR 20 jburel 'Build' 2025-09-17 00:54:59,101 [ scc.merge] INFO 2025-09-17 00:54:59,101 [ scc.merge] INFO Merged PRs: 2025-09-17 00:54:59,101 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-17 00:54:59,101 [ scc.merge] INFO 2025-09-17 00:54:59,101 [ scc.merge] INFO Repository: ome/omero-web-zarr 2025-09-17 00:54:59,101 [ scc.merge] INFO Excluded PRs: 2025-09-17 00:54:59,101 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft) 2025-09-17 00:54:59,101 [ scc.merge] INFO Updating 8f3c313..00e0207 2025-09-17 00:54:59,101 [ scc.merge] INFO Previously merged: 2025-09-17 00:54:59,102 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints' 2025-09-17 00:54:59,102 [ scc.merge] INFO 2025-09-17 00:54:59,102 [ scc.merge] INFO Merged PRs: 2025-09-17 00:54:59,102 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import' 2025-09-17 00:54:59,102 [ scc.merge] INFO 2025-09-17 00:54:59,102 [ scc.merge] INFO Conflicting PRs (not included): 2025-09-17 00:54:59,102 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' 2025-09-17 00:54:59,102 [ scc.merge] INFO 2025-09-17 00:54:59,102 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror 2025-09-17 00:54:59,102 [ scc.merge] INFO Already up to date. 2025-09-17 00:54:59,102 [ scc.merge] INFO 2025-09-17 00:54:59,102 [ scc.merge] INFO Merged PRs: 2025-09-17 00:54:59,102 [ scc.merge] INFO - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-17 00:54:59,102 [ scc.merge] INFO 2025-09-17 00:54:59,102 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest 2025-09-17 00:54:59,102 [ scc.merge] INFO Already up to date. 2025-09-17 00:54:59,102 [ scc.merge] INFO 2025-09-17 00:54:59,102 [ scc.merge] INFO Merged PRs: 2025-09-17 00:54:59,102 [ scc.merge] INFO - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-17 00:54:59,102 [ scc.merge] INFO 2025-09-17 00:54:59,102 [ scc.merge] INFO Repository: ome/rOMERO-gateway 2025-09-17 00:54:59,102 [ scc.merge] INFO Already up to date. 2025-09-17 00:54:59,102 [ scc.merge] INFO 2025-09-17 00:54:59,102 [ scc.merge] INFO Conflicting PRs (not included): 2025-09-17 00:54:59,102 [ scc.merge] INFO - PR 100 dominikl 'Run tests properly' 2025-09-17 00:54:59,102 [ scc.merge] INFO 2025-09-17 00:54:59,102 [ scc.merge] INFO Repository: ome/scripts 2025-09-17 00:54:59,102 [ scc.merge] INFO Excluded PRs: 2025-09-17 00:54:59,102 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn) 2025-09-17 00:54:59,102 [ scc.merge] INFO - PR 103 joshmoore 'Script for calculating min/max' (exclude comment) 2025-09-17 00:54:59,102 [ scc.merge] INFO Updating 4b4c755..03b9116 2025-09-17 00:54:59,102 [ scc.merge] INFO Previously merged: 2025-09-17 00:54:59,102 [ scc.merge] INFO - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows' 2025-09-17 00:54:59,102 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes' 2025-09-17 00:54:59,102 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests' 2025-09-17 00:54:59,102 [ scc.merge] INFO 2025-09-17 00:54:59,102 [ scc.merge] INFO Merged PRs: 2025-09-17 00:54:59,102 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images' 2025-09-17 00:54:59,102 [ scc.merge] INFO 2025-09-17 00:54:59,102 [ scc.merge] INFO Conflicting PRs (not included): 2025-09-17 00:54:59,102 [ scc.merge] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py' 2025-09-17 00:54:59,103 [ scc.merge] INFO 2025-09-17 00:54:59,103 [ scc.merge] DEBUG Cleaning remote branches created for merging 2025-09-17 00:54:59,103 [ scc.git] DEBUG Calling 'git remote' 2025-09-17 00:54:59,105 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client 2025-09-17 00:54:59,105 [ scc.git] DEBUG Calling 'git remote' 2025-09-17 00:54:59,107 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:54:59,107 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate 2025-09-17 00:54:59,107 [ scc.git] DEBUG Calling 'git remote' 2025-09-17 00:54:59,110 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:54:59,110 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render 2025-09-17 00:54:59,110 [ scc.git] DEBUG Calling 'git remote' 2025-09-17 00:54:59,112 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:54:59,112 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr 2025-09-17 00:54:59,112 [ scc.git] DEBUG Calling 'git remote' 2025-09-17 00:54:59,114 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:54:59,114 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure 2025-09-17 00:54:59,114 [ scc.git] DEBUG Calling 'git remote' 2025-09-17 00:54:59,117 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:54:59,117 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage 2025-09-17 00:54:59,117 [ scc.git] DEBUG Calling 'git remote' 2025-09-17 00:54:59,119 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:54:59,119 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery 2025-09-17 00:54:59,119 [ scc.git] DEBUG Calling 'git remote' 2025-09-17 00:54:59,121 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:54:59,121 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer 2025-09-17 00:54:59,121 [ scc.git] DEBUG Calling 'git remote' 2025-09-17 00:54:59,124 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:54:59,124 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr 2025-09-17 00:54:59,124 [ scc.git] DEBUG Calling 'git remote' 2025-09-17 00:54:59,126 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:54:59,126 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata 2025-09-17 00:54:59,126 [ scc.git] DEBUG Calling 'git remote' 2025-09-17 00:54:59,128 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:54:59,128 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade 2025-09-17 00:54:59,128 [ scc.git] DEBUG Calling 'git remote' 2025-09-17 00:54:59,130 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:54:59,130 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools 2025-09-17 00:54:59,130 [ scc.git] DEBUG Calling 'git remote' 2025-09-17 00:54:59,133 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:54:59,133 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois 2025-09-17 00:54:59,133 [ scc.git] DEBUG Calling 'git remote' 2025-09-17 00:54:59,135 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:54:59,135 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup 2025-09-17 00:54:59,135 [ scc.git] DEBUG Calling 'git remote' 2025-09-17 00:54:59,137 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:54:59,137 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra 2025-09-17 00:54:59,137 [ scc.git] DEBUG Calling 'git remote' 2025-09-17 00:54:59,139 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:54:59,139 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload 2025-09-17 00:54:59,139 [ scc.git] DEBUG Calling 'git remote' 2025-09-17 00:54:59,141 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:54:59,142 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope 2025-09-17 00:54:59,142 [ scc.git] DEBUG Calling 'git remote' 2025-09-17 00:54:59,144 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:54:59,144 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr 2025-09-17 00:54:59,144 [ scc.git] DEBUG Calling 'git remote' 2025-09-17 00:54:59,146 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:54:59,146 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror 2025-09-17 00:54:59,146 [ scc.git] DEBUG Calling 'git remote' 2025-09-17 00:54:59,148 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:54:59,149 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest 2025-09-17 00:54:59,149 [ scc.git] DEBUG Calling 'git remote' 2025-09-17 00:54:59,151 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:54:59,151 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway 2025-09-17 00:54:59,151 [ scc.git] DEBUG Calling 'git remote' 2025-09-17 00:54:59,153 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-17 00:54:59,153 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts 2025-09-17 00:54:59,153 [ scc.git] DEBUG Calling 'git remote' 2025-09-17 00:54:59,155 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push Update component versions python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer. warnings.warn( WARNING: The wheel package is not available. WARNING: The wheel package is not available. /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer. warnings.warn( WARNING: The wheel package is not available. WARNING: The wheel package is not available. /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0' warnings.warn(tmpl.format(**locals())) /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0' warnings.warn(tmpl.format(**locals())) /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory Updating omero-gateway from 5.10.0 to 5.10.4-SNAPSHOT grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Commit all component version changes Entering 'minimal-omero-client' Entering 'omero-cli-duplicate' Entering 'omero-cli-render' Entering 'omero-cli-zarr' Entering 'omero-figure' Entering 'omero-fpbioimage' Entering 'omero-gallery' Entering 'omero-iviewer' Entering 'omero-mapr' Entering 'omero-metadata' Entering 'omero-parade' Entering 'omero-prometheus-tools' Entering 'omero-rois' Entering 'omero-signup' Entering 'omero-test-infra' Entering 'omero-upload' Entering 'omero-virtual-microscope' Entering 'omero-web-zarr' Entering 'omero-weberror' Entering 'omero-webtest' Entering 'rOMERO-gateway' Entering 'scripts' Entering 'minimal-omero-client' [detached HEAD 95c80f0] Update component versions 1 file changed, 1 insertion(+), 1 deletion(-) Entering 'omero-cli-duplicate' HEAD detached from 4777ef8 nothing to commit, working tree clean Entering 'omero-cli-render' HEAD detached from ce6e13c nothing to commit, working tree clean Entering 'omero-cli-zarr' HEAD detached from 11d3587 Untracked files: (use "git add <file>..." to include in what will be committed) .eggs/ nothing added to commit but untracked files present (use "git add" to track) Entering 'omero-figure' HEAD detached from 9cc36cde nothing to commit, working tree clean Entering 'omero-fpbioimage' HEAD detached from 3b6c05a nothing to commit, working tree clean Entering 'omero-gallery' HEAD detached from 2a621da nothing to commit, working tree clean Entering 'omero-iviewer' HEAD detached from 7a798ce nothing to commit, working tree clean Entering 'omero-mapr' HEAD detached from 0a557da nothing to commit, working tree clean Entering 'omero-metadata' HEAD detached from 3cd120c nothing to commit, working tree clean Entering 'omero-parade' HEAD detached from fb5ae86 nothing to commit, working tree clean Entering 'omero-prometheus-tools' HEAD detached from eb47378 nothing to commit, working tree clean Entering 'omero-rois' HEAD detached from bdfeb5e nothing to commit, working tree clean Entering 'omero-signup' HEAD detached from be76813 nothing to commit, working tree clean Entering 'omero-test-infra' HEAD detached from cda3ec6 nothing to commit, working tree clean Entering 'omero-upload' HEAD detached from 100f6ae nothing to commit, working tree clean Entering 'omero-virtual-microscope' HEAD detached from deab817 nothing to commit, working tree clean Entering 'omero-web-zarr' HEAD detached from 8f3c313 nothing to commit, working tree clean Entering 'omero-weberror' HEAD detached from 70b01ed nothing to commit, working tree clean Entering 'omero-webtest' HEAD detached from 5bfef29 nothing to commit, working tree clean Entering 'rOMERO-gateway' HEAD detached from 7b5d64d nothing to commit, working tree clean Entering 'scripts' HEAD detached from 4b4c755 nothing to commit, working tree clean [detached HEAD e60c13b] Update component versions 1 file changed, 1 insertion(+), 1 deletion(-) Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 2025-09-17 00:55:46,174 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 2025-09-17 00:55:55,365 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 2025-09-17 00:55:57,774 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2025-09-17 00:56:02,538 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2025-09-17 00:56:41,520 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci [Pipeline] archiveArtifacts Archiving artifacts [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS