Skipping 208 KB..
Full LogTestTestTestTestTestTestTestTestTestTestTestTestTest
2025-09-28 00:30:06,679 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-09-28 00:30:06,679 [ scc.repo] DEBUG ## Branches found:
2025-09-28 00:30:06,679 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-09-28 00:30:06,679 [ scc.git] DEBUG Get sha1 of %s
2025-09-28 00:30:06,679 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:30:06,682 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-28 00:30:06,684 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-28 00:30:06,684 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-28 00:30:06,686 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-28 00:30:06,693 [ scc.git] DEBUG Updating 3cd120c..55060a2
2025-09-28 00:30:07,356 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2025-09-28 00:30:07,357 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2025-09-28 00:30:07,643 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-09-28 00:30:07,643 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2025-09-28 00:30:07,647 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2025-09-28 00:30:07,921 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-09-28 00:30:07,921 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2025-09-28 00:30:07,925 [ scc.git] DEBUG ## Unique users: []
2025-09-28 00:30:07,925 [ scc.git] DEBUG Get sha1 of %s
2025-09-28 00:30:07,925 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:30:07,927 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-09-28 00:30:07,931 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:30:07,934 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-09-28 00:30:07,946 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2025-09-28 00:30:07,946 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2025-09-28 00:30:07,946 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-09-28 00:30:07,946 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-09-28 00:30:07,946 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-09-28 00:30:07,946 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-09-28 00:30:07,948 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-09-28 00:30:07,952 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-09-28 00:30:08,099 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-28 00:30:08,099 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-09-28 00:30:08,103 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501'
2025-09-28 00:30:08,106 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#544](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/544/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/544/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/cli.py
- src/omero_metadata/populate.py
--conflicts
2025-09-28 00:30:08,108 [ scc.config] DEBUG Found github.token
2025-09-28 00:30:08,108 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2025-09-28 00:30:08,108 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2025-09-28 00:30:08,112 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:30:08,114 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2025-09-28 00:30:08,127 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-09-28 00:30:08,127 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-09-28 00:30:08,127 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2025-09-28 00:30:08,127 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-09-28 00:30:08,127 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-09-28 00:30:08,130 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-09-28 00:30:08,134 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-09-28 00:30:08,491 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-28 00:30:08,492 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7'
2025-09-28 00:30:08,496 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501'
2025-09-28 00:30:08,498 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#544](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/544/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/544/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2025-09-28 00:30:08,500 [ scc.config] DEBUG Found github.token
2025-09-28 00:30:08,500 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2025-09-28 00:30:08,500 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-28 00:30:08,537 [ scc.git] DEBUG Get sha1 of %s
2025-09-28 00:30:08,537 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:30:08,539 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-28 00:30:08,575 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-28 00:30:08,579 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f24deb2b0d0> has no local changes
2025-09-28 00:30:08,579 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#544 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/544/)'
2025-09-28 00:30:08,585 [ scc.git] DEBUG [detached HEAD 90349a0] merge master -Dorg -Ssuccess-only
2025-09-28 00:30:08,586 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-28 00:30:08,586 [ scc.repo] DEBUG ## PRs found:
2025-09-28 00:30:09,063 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2025-09-28 00:30:09,637 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2025-09-28 00:30:10,139 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-09-28 00:30:10,602 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-28 00:30:11,113 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-28 00:30:11,611 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-09-28 00:30:12,027 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2025-09-28 00:30:12,028 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-28 00:30:12,525 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2025-09-28 00:30:12,525 [ scc.repo] DEBUG # ... Include label: dependencies
2025-09-28 00:30:13,063 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-09-28 00:30:13,565 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-28 00:30:14,047 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-28 00:30:14,508 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-09-28 00:30:14,914 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2025-09-28 00:30:14,914 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-09-28 00:30:15,404 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2025-09-28 00:30:15,405 [ scc.repo] DEBUG # ... Include label: dependencies
2025-09-28 00:30:15,951 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-09-28 00:30:16,467 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-28 00:30:16,979 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-28 00:30:17,563 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-09-28 00:30:18,028 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2025-09-28 00:30:18,029 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-09-28 00:30:18,491 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2025-09-28 00:30:19,326 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2025-09-28 00:30:19,763 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2025-09-28 00:30:20,230 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2025-09-28 00:30:20,693 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2025-09-28 00:30:21,276 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2025-09-28 00:30:21,766 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2025-09-28 00:30:21,767 [ scc.repo] DEBUG ## Branches found:
2025-09-28 00:30:21,767 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-09-28 00:30:21,768 [ scc.git] DEBUG Get sha1 of %s
2025-09-28 00:30:21,768 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:30:21,770 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-28 00:30:21,772 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-28 00:30:21,772 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-28 00:30:21,775 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-28 00:30:21,778 [ scc.git] DEBUG Already up to date.
2025-09-28 00:30:21,778 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2025-09-28 00:30:22,069 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-09-28 00:30:22,069 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2025-09-28 00:30:22,073 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2025-09-28 00:30:22,351 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-09-28 00:30:22,351 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2025-09-28 00:30:22,355 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2025-09-28 00:30:22,627 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-09-28 00:30:22,627 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2025-09-28 00:30:22,631 [ scc.git] DEBUG ## Unique users: []
2025-09-28 00:30:22,631 [ scc.git] DEBUG Get sha1 of %s
2025-09-28 00:30:22,631 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:30:22,633 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2025-09-28 00:30:22,635 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:30:22,637 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2025-09-28 00:30:22,644 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-28 00:30:22,647 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2025-09-28 00:30:22,647 [ scc.git] DEBUG package.json | 2 +-
2025-09-28 00:30:22,647 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2025-09-28 00:30:22,812 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-28 00:30:22,812 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2025-09-28 00:30:22,815 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:30:22,817 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2025-09-28 00:30:22,826 [ scc.git] DEBUG Auto-merging package-lock.json
2025-09-28 00:30:22,826 [ scc.git] DEBUG Auto-merging package.json
2025-09-28 00:30:22,826 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-28 00:30:22,829 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2025-09-28 00:30:22,829 [ scc.git] DEBUG package.json | 2 +-
2025-09-28 00:30:22,829 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2025-09-28 00:30:23,205 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-28 00:30:23,205 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-09-28 00:30:23,208 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:30:23,210 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-09-28 00:30:23,217 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-28 00:30:23,219 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-09-28 00:30:23,219 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-09-28 00:30:23,593 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-28 00:30:23,594 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-28 00:30:23,630 [ scc.git] DEBUG Get sha1 of %s
2025-09-28 00:30:23,630 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:30:23,632 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-28 00:30:23,668 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-28 00:30:23,672 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f24da348d90> has no local changes
2025-09-28 00:30:23,672 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#544 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/544/)'
2025-09-28 00:30:23,677 [ scc.git] DEBUG [detached HEAD 3909ea4] merge master -Dorg -Ssuccess-only
2025-09-28 00:30:23,677 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-28 00:30:23,677 [ scc.repo] DEBUG ## PRs found:
2025-09-28 00:30:24,081 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None
2025-09-28 00:30:24,568 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/16 HTTP/1.1" 200 None
2025-09-28 00:30:24,569 [ scc.repo] DEBUG # ... Include label: dependencies
2025-09-28 00:30:25,205 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None
2025-09-28 00:30:25,721 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-28 00:30:26,215 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-28 00:30:26,763 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None
2025-09-28 00:30:27,191 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/5381b9f25e1666d81d236039a1317276291e9b2e?per_page=1 HTTP/1.1" 200 2
2025-09-28 00:30:27,191 [ scc.repo] DEBUG - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-28 00:30:27,191 [ scc.repo] DEBUG ## Branches found:
2025-09-28 00:30:27,192 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-09-28 00:30:27,192 [ scc.git] DEBUG Get sha1 of %s
2025-09-28 00:30:27,192 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:30:27,194 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-28 00:30:27,196 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-28 00:30:27,196 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-28 00:30:27,199 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-28 00:30:27,201 [ scc.git] DEBUG Already up to date.
2025-09-28 00:30:27,201 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head'
2025-09-28 00:30:27,488 [ scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools
2025-09-28 00:30:27,488 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD
2025-09-28 00:30:27,492 [ scc.git] DEBUG ## Unique users: []
2025-09-28 00:30:27,492 [ scc.git] DEBUG Get sha1 of %s
2025-09-28 00:30:27,492 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:30:27,494 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5381b9f25e1666d81d236039a1317276291e9b2e'
2025-09-28 00:30:27,497 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:30:27,499 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 5381b9f25e1666d81d236039a1317276291e9b2e'
2025-09-28 00:30:27,505 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-28 00:30:27,507 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-09-28 00:30:27,507 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-09-28 00:30:27,667 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-28 00:30:27,667 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-28 00:30:27,704 [ scc.git] DEBUG Get sha1 of %s
2025-09-28 00:30:27,704 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:30:27,706 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-28 00:30:27,740 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-28 00:30:27,743 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f24da38e010> has no local changes
2025-09-28 00:30:27,743 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#544 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/544/)'
2025-09-28 00:30:27,748 [ scc.git] DEBUG [detached HEAD 4463bd9] merge master -Dorg -Ssuccess-only
2025-09-28 00:30:27,748 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-28 00:30:27,749 [ scc.repo] DEBUG ## PRs found:
2025-09-28 00:30:28,231 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2025-09-28 00:30:28,708 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/34 HTTP/1.1" 200 None
2025-09-28 00:30:28,708 [ scc.repo] DEBUG # ... Include label: dependencies
2025-09-28 00:30:29,323 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2025-09-28 00:30:29,840 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-28 00:30:30,345 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-28 00:30:30,796 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2025-09-28 00:30:31,260 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/149bb248277256d589ea0db597c04739e8134301?per_page=1 HTTP/1.1" 200 None
2025-09-28 00:30:31,703 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2025-09-28 00:30:32,151 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/status HTTP/1.1" 200 None
2025-09-28 00:30:32,151 [ scc.repo] DEBUG - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-28 00:30:32,639 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33 HTTP/1.1" 200 None
2025-09-28 00:30:33,083 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33/comments HTTP/1.1" 200 None
2025-09-28 00:30:33,618 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-09-28 00:30:34,107 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-28 00:30:34,584 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-28 00:30:35,113 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-09-28 00:30:35,559 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/1122baea98746effd4eb59deed25870f673ce3d3?per_page=1 HTTP/1.1" 200 None
2025-09-28 00:30:36,055 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-09-28 00:30:36,494 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/status HTTP/1.1" 200 None
2025-09-28 00:30:36,494 [ scc.repo] DEBUG - PR 33 jo-mueller 'Add roi to array functions'
2025-09-28 00:30:36,966 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2025-09-28 00:30:36,966 [ scc.repo] DEBUG ## Branches found:
2025-09-28 00:30:36,967 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-09-28 00:30:36,967 [ scc.git] DEBUG Get sha1 of %s
2025-09-28 00:30:36,967 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:30:36,969 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-28 00:30:36,971 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-28 00:30:36,971 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-28 00:30:36,974 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-28 00:30:36,976 [ scc.git] DEBUG Already up to date.
2025-09-28 00:30:36,976 [ scc.git] DEBUG Calling 'git fetch origin pull/33/head'
2025-09-28 00:30:37,256 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2025-09-28 00:30:37,256 [ scc.git] DEBUG * branch refs/pull/33/head -> FETCH_HEAD
2025-09-28 00:30:37,260 [ scc.git] DEBUG Calling 'git fetch origin pull/34/head'
2025-09-28 00:30:37,534 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2025-09-28 00:30:37,534 [ scc.git] DEBUG * branch refs/pull/34/head -> FETCH_HEAD
2025-09-28 00:30:37,538 [ scc.git] DEBUG ## Unique users: []
2025-09-28 00:30:37,538 [ scc.git] DEBUG Get sha1 of %s
2025-09-28 00:30:37,538 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:30:37,540 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1122baea98746effd4eb59deed25870f673ce3d3'
2025-09-28 00:30:37,543 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:30:37,545 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 33 (Add roi to array functions) 1122baea98746effd4eb59deed25870f673ce3d3'
2025-09-28 00:30:37,551 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-28 00:30:37,554 [ scc.git] DEBUG setup.py | 4 +-
2025-09-28 00:30:37,554 [ scc.git] DEBUG src/omero_rois/__init__.py | 4 +
2025-09-28 00:30:37,554 [ scc.git] DEBUG src/omero_rois/library.py | 204 +++++++++++++++++++++++++++++++++++++++++++--
2025-09-28 00:30:37,554 [ scc.git] DEBUG 3 files changed, 203 insertions(+), 9 deletions(-)
2025-09-28 00:30:37,707 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-28 00:30:37,707 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...149bb248277256d589ea0db597c04739e8134301'
2025-09-28 00:30:37,710 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:30:37,712 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 34 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 149bb248277256d589ea0db597c04739e8134301'
2025-09-28 00:30:37,718 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-28 00:30:37,721 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-09-28 00:30:37,721 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-09-28 00:30:38,090 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-28 00:30:38,091 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-28 00:30:38,127 [ scc.git] DEBUG Get sha1 of %s
2025-09-28 00:30:38,127 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:30:38,129 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-28 00:30:38,166 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-28 00:30:38,169 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f24dc43c110> has no local changes
2025-09-28 00:30:38,169 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
- PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#544 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/544/)'
2025-09-28 00:30:38,174 [ scc.git] DEBUG [detached HEAD 6e50439] merge master -Dorg -Ssuccess-only
2025-09-28 00:30:38,174 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-28 00:30:38,174 [ scc.repo] DEBUG ## PRs found:
2025-09-28 00:30:38,648 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2025-09-28 00:30:39,131 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/22 HTTP/1.1" 200 None
2025-09-28 00:30:39,132 [ scc.repo] DEBUG # ... Include label: dependencies
2025-09-28 00:30:39,688 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None
2025-09-28 00:30:40,222 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-28 00:30:40,719 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-28 00:30:41,172 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None
2025-09-28 00:30:41,584 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/8b27e47a330555e99e9594f0c4b546946f4f98aa?per_page=1 HTTP/1.1" 200 2
2025-09-28 00:30:41,585 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-28 00:30:42,084 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2025-09-28 00:30:42,625 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2025-09-28 00:30:43,128 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-09-28 00:30:43,595 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-28 00:30:44,165 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-09-28 00:30:44,574 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2025-09-28 00:30:44,574 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2025-09-28 00:30:44,574 [ scc.repo] DEBUG ## Branches found:
2025-09-28 00:30:44,574 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-09-28 00:30:44,574 [ scc.git] DEBUG Get sha1 of %s
2025-09-28 00:30:44,575 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:30:44,577 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-28 00:30:44,579 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-28 00:30:44,579 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-28 00:30:44,582 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-28 00:30:44,584 [ scc.git] DEBUG Already up to date.
2025-09-28 00:30:44,584 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2025-09-28 00:30:44,872 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2025-09-28 00:30:44,872 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2025-09-28 00:30:44,876 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2025-09-28 00:30:45,163 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2025-09-28 00:30:45,163 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2025-09-28 00:30:45,166 [ scc.git] DEBUG ## Unique users: []
2025-09-28 00:30:45,166 [ scc.git] DEBUG Get sha1 of %s
2025-09-28 00:30:45,166 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:30:45,169 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-09-28 00:30:45,172 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:30:45,174 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-09-28 00:30:45,181 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2025-09-28 00:30:45,181 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2025-09-28 00:30:45,181 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2025-09-28 00:30:45,181 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2025-09-28 00:30:45,181 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2025-09-28 00:30:45,181 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2025-09-28 00:30:45,181 [ scc.git] DEBUG Auto-merging setup.py
2025-09-28 00:30:45,181 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2025-09-28 00:30:45,181 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-09-28 00:30:45,182 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-09-28 00:30:45,184 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2025-09-28 00:30:45,187 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2025-09-28 00:30:45,323 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-28 00:30:45,323 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-09-28 00:30:45,326 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2025-09-28 00:30:45,328 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#544](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/544/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/544/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_signup/urls.py
- omero_signup/signup_settings.py
- omero_signup/views.py
- setup.py
--conflicts
2025-09-28 00:30:45,330 [ scc.config] DEBUG Found github.token
2025-09-28 00:30:45,330 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2025-09-28 00:30:45,330 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8b27e47a330555e99e9594f0c4b546946f4f98aa'
2025-09-28 00:30:45,333 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:30:45,335 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8b27e47a330555e99e9594f0c4b546946f4f98aa'
2025-09-28 00:30:45,341 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-28 00:30:45,344 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-09-28 00:30:45,344 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-09-28 00:30:45,721 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-28 00:30:45,721 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-28 00:30:45,758 [ scc.git] DEBUG Get sha1 of %s
2025-09-28 00:30:45,758 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:30:45,760 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-28 00:30:45,796 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-28 00:30:45,799 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f24da387a10> has no local changes
2025-09-28 00:30:45,799 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#544 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/544/)'
2025-09-28 00:30:45,805 [ scc.git] DEBUG [detached HEAD f9626db] merge master -Dorg -Ssuccess-only
2025-09-28 00:30:45,805 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-28 00:30:45,805 [ scc.repo] DEBUG ## PRs found:
2025-09-28 00:30:46,294 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2025-09-28 00:30:46,755 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/76 HTTP/1.1" 200 None
2025-09-28 00:30:47,312 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-09-28 00:30:47,815 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-28 00:30:48,309 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-28 00:30:48,845 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-09-28 00:30:49,253 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6?per_page=1 HTTP/1.1" 200 2
2025-09-28 00:30:49,253 [ scc.repo] DEBUG - PR 76 will-moore 'Run cli deps'
2025-09-28 00:30:49,720 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2025-09-28 00:30:50,197 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2025-09-28 00:30:50,703 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None
2025-09-28 00:30:51,206 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-28 00:30:51,663 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-28 00:30:52,246 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73 HTTP/1.1" 200 None
2025-09-28 00:30:52,704 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73/comments HTTP/1.1" 200 None
2025-09-28 00:30:53,193 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12 HTTP/1.1" 200 None
2025-09-28 00:30:53,647 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12/comments HTTP/1.1" 200 None
2025-09-28 00:30:54,134 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-09-28 00:30:54,584 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-28 00:30:55,107 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-09-28 00:30:55,559 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/425319051224e8481afc40083fd9b5db4bc99928?per_page=1 HTTP/1.1" 200 2
2025-09-28 00:30:55,559 [ scc.repo] DEBUG - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-09-28 00:30:55,560 [ scc.repo] DEBUG ## Branches found:
2025-09-28 00:30:55,560 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-09-28 00:30:55,560 [ scc.git] DEBUG Get sha1 of %s
2025-09-28 00:30:55,560 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:30:55,562 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-28 00:30:55,564 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-28 00:30:55,564 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-28 00:30:55,567 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-28 00:30:55,570 [ scc.git] DEBUG Already up to date.
2025-09-28 00:30:55,570 [ scc.git] DEBUG Calling 'git fetch origin pull/12/head'
2025-09-28 00:30:55,864 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-09-28 00:30:55,864 [ scc.git] DEBUG * branch refs/pull/12/head -> FETCH_HEAD
2025-09-28 00:30:55,868 [ scc.git] DEBUG Calling 'git fetch origin pull/76/head'
2025-09-28 00:30:56,154 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-09-28 00:30:56,154 [ scc.git] DEBUG * branch refs/pull/76/head -> FETCH_HEAD
2025-09-28 00:30:56,158 [ scc.git] DEBUG ## Unique users: []
2025-09-28 00:30:56,158 [ scc.git] DEBUG Get sha1 of %s
2025-09-28 00:30:56,158 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:30:56,160 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...425319051224e8481afc40083fd9b5db4bc99928'
2025-09-28 00:30:56,164 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:30:56,166 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 12 (IDR: use downloaded ansible templates & variables to configure infra) 425319051224e8481afc40083fd9b5db4bc99928'
2025-09-28 00:30:56,176 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-28 00:30:56,179 [ scc.git] DEBUG idr-compose.yml | 66 ++++++++++++++
2025-09-28 00:30:56,179 [ scc.git] DEBUG idr-haproxy.yml | 58 +++++++++++++
2025-09-28 00:30:56,179 [ scc.git] DEBUG idr/40-ansible.sh | 7 ++
2025-09-28 00:30:56,179 [ scc.git] DEBUG idr/70-reset-password.sh | 1 +
2025-09-28 00:30:56,179 [ scc.git] DEBUG idr/nginx/conf.d/default.conf | 1 +
2025-09-28 00:30:56,179 [ scc.git] DEBUG idr/nginx/conf.d/example_ssl.conf | 1 +
2025-09-28 00:30:56,179 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cache.conf | 53 +++++++++++
2025-09-28 00:30:56,179 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cachebuster.conf | 114 ++++++++++++++++++++++++
2025-09-28 00:30:56,180 [ scc.git] DEBUG idr/nginx/conf.d/proxy-default.conf | 135 +++++++++++++++++++++++++++++
2025-09-28 00:30:56,180 [ scc.git] DEBUG idr/nginx/conf.d/proxy-omeroreadwrite.conf | 115 ++++++++++++++++++++++++
2025-09-28 00:30:56,180 [ scc.git] DEBUG idr/nginx/conf.d/proxy-redirect.conf | 15 ++++
2025-09-28 00:30:56,180 [ scc.git] DEBUG idr/nginx/conf.d/proxy-upstream.conf | 13 +++
2025-09-28 00:30:56,180 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v0.conf | 26 ++++++
2025-09-28 00:30:56,180 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v1.conf | 30 +++++++
2025-09-28 00:30:56,181 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v2.conf | 30 +++++++
2025-09-28 00:30:56,181 [ scc.git] DEBUG idr/nginx/conf.d/proxy-websockets.conf | 6 ++
2025-09-28 00:30:56,181 [ scc.git] DEBUG idr/nginx/nginx.conf | 53 +++++++++++
2025-09-28 00:30:56,181 [ scc.git] DEBUG idr/omero/Dockerfile | 3 +
2025-09-28 00:30:56,181 [ scc.git] DEBUG idr/omero/playbook.yml | 41 +++++++++
2025-09-28 00:30:56,181 [ scc.git] DEBUG idr/redirect/Dockerfile | 6 ++
2025-09-28 00:30:56,181 [ scc.git] DEBUG idr/web/Dockerfile | 5 ++
2025-09-28 00:30:56,181 [ scc.git] DEBUG idr/web/playbook.yml | 45 ++++++++++
2025-09-28 00:30:56,181 [ scc.git] DEBUG 22 files changed, 824 insertions(+)
2025-09-28 00:30:56,181 [ scc.git] DEBUG create mode 100644 idr-compose.yml
2025-09-28 00:30:56,181 [ scc.git] DEBUG create mode 100644 idr-haproxy.yml
2025-09-28 00:30:56,181 [ scc.git] DEBUG create mode 100755 idr/40-ansible.sh
2025-09-28 00:30:56,181 [ scc.git] DEBUG create mode 100755 idr/70-reset-password.sh
2025-09-28 00:30:56,181 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/default.conf
2025-09-28 00:30:56,181 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/example_ssl.conf
2025-09-28 00:30:56,181 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cache.conf
2025-09-28 00:30:56,181 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cachebuster.conf
2025-09-28 00:30:56,181 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-default.conf
2025-09-28 00:30:56,181 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-omeroreadwrite.conf
2025-09-28 00:30:56,181 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-redirect.conf
2025-09-28 00:30:56,181 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-upstream.conf
2025-09-28 00:30:56,181 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v0.conf
2025-09-28 00:30:56,181 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v1.conf
2025-09-28 00:30:56,181 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v2.conf
2025-09-28 00:30:56,181 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-websockets.conf
2025-09-28 00:30:56,181 [ scc.git] DEBUG create mode 100644 idr/nginx/nginx.conf
2025-09-28 00:30:56,181 [ scc.git] DEBUG create mode 100644 idr/omero/Dockerfile
2025-09-28 00:30:56,181 [ scc.git] DEBUG create mode 100644 idr/omero/playbook.yml
2025-09-28 00:30:56,181 [ scc.git] DEBUG create mode 100644 idr/redirect/Dockerfile
2025-09-28 00:30:56,181 [ scc.git] DEBUG create mode 100644 idr/web/Dockerfile
2025-09-28 00:30:56,181 [ scc.git] DEBUG create mode 100644 idr/web/playbook.yml
2025-09-28 00:30:56,325 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-28 00:30:56,326 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-09-28 00:30:56,330 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:30:56,332 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 76 (Run cli deps) bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-09-28 00:30:56,340 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-28 00:30:56,343 [ scc.git] DEBUG docker | 1 +
2025-09-28 00:30:56,343 [ scc.git] DEBUG 1 file changed, 1 insertion(+)
2025-09-28 00:30:56,718 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-28 00:30:56,719 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-28 00:30:56,756 [ scc.git] DEBUG Get sha1 of %s
2025-09-28 00:30:56,756 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:30:56,758 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-28 00:30:56,794 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-28 00:30:56,797 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f24dc627e10> has no local changes
2025-09-28 00:30:56,797 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
- PR 76 will-moore 'Run cli deps'
Generated by OMERO-plugins-push#544 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/544/)'
2025-09-28 00:30:56,804 [ scc.git] DEBUG [detached HEAD 312d6f6] merge master -Dorg -Ssuccess-only
2025-09-28 00:30:56,804 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-28 00:30:56,804 [ scc.repo] DEBUG ## PRs found:
2025-09-28 00:30:57,245 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 None
2025-09-28 00:30:57,718 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/issues/14 HTTP/1.1" 200 None
2025-09-28 00:30:57,718 [ scc.repo] DEBUG # ... Include label: dependencies
2025-09-28 00:30:58,302 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None
2025-09-28 00:30:58,806 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-28 00:30:59,322 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-28 00:30:59,899 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None
2025-09-28 00:31:00,310 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/statuses/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?per_page=1 HTTP/1.1" 200 2
2025-09-28 00:31:00,310 [ scc.repo] DEBUG - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-28 00:31:00,310 [ scc.repo] DEBUG ## Branches found:
2025-09-28 00:31:00,310 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-09-28 00:31:00,310 [ scc.git] DEBUG Get sha1 of %s
2025-09-28 00:31:00,310 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:31:00,313 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-28 00:31:00,315 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-28 00:31:00,315 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-28 00:31:00,317 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-28 00:31:00,320 [ scc.git] DEBUG Already up to date.
2025-09-28 00:31:00,320 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2025-09-28 00:31:00,609 [ scc.git] DEBUG From https://github.com/ome/omero-upload
2025-09-28 00:31:00,609 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2025-09-28 00:31:00,613 [ scc.git] DEBUG ## Unique users: []
2025-09-28 00:31:00,613 [ scc.git] DEBUG Get sha1 of %s
2025-09-28 00:31:00,613 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:31:00,615 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2025-09-28 00:31:00,618 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:31:00,620 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2025-09-28 00:31:00,626 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-28 00:31:00,629 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-09-28 00:31:00,629 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-09-28 00:31:00,805 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-28 00:31:00,806 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-28 00:31:00,842 [ scc.git] DEBUG Get sha1 of %s
2025-09-28 00:31:00,842 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:31:00,844 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-28 00:31:00,880 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-28 00:31:00,883 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f24da354590> has no local changes
2025-09-28 00:31:00,883 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#544 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/544/)'
2025-09-28 00:31:00,888 [ scc.git] DEBUG [detached HEAD 870ff2b] merge master -Dorg -Ssuccess-only
2025-09-28 00:31:00,889 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-28 00:31:00,889 [ scc.repo] DEBUG ## PRs found:
2025-09-28 00:31:01,358 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 None
2025-09-28 00:31:01,833 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/issues/22 HTTP/1.1" 200 None
2025-09-28 00:31:01,834 [ scc.repo] DEBUG # ... Include label: dependencies
2025-09-28 00:31:02,408 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None
2025-09-28 00:31:02,895 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-28 00:31:03,393 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-28 00:31:03,965 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None
2025-09-28 00:31:04,381 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/statuses/2ee819462af52bf2878fadf06d6ebdbafb8f1902?per_page=1 HTTP/1.1" 200 2
2025-09-28 00:31:04,381 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-28 00:31:04,381 [ scc.repo] DEBUG ## Branches found:
2025-09-28 00:31:04,381 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-09-28 00:31:04,381 [ scc.git] DEBUG Get sha1 of %s
2025-09-28 00:31:04,381 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:31:04,384 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-28 00:31:04,386 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-28 00:31:04,386 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-28 00:31:04,388 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-28 00:31:04,395 [ scc.git] DEBUG Updating deab817..160d894
2025-09-28 00:31:05,036 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2025-09-28 00:31:05,037 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2025-09-28 00:31:05,328 [ scc.git] DEBUG From https://github.com/ome/omero-virtual-microscope
2025-09-28 00:31:05,328 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2025-09-28 00:31:05,332 [ scc.git] DEBUG ## Unique users: []
2025-09-28 00:31:05,332 [ scc.git] DEBUG Get sha1 of %s
2025-09-28 00:31:05,332 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:31:05,335 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2025-09-28 00:31:05,337 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:31:05,339 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2025-09-28 00:31:05,345 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-28 00:31:05,348 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-09-28 00:31:05,348 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-09-28 00:31:05,493 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-28 00:31:05,494 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-28 00:31:05,531 [ scc.git] DEBUG Get sha1 of %s
2025-09-28 00:31:05,531 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:31:05,533 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-28 00:31:05,568 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-28 00:31:05,571 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f24da388cd0> has no local changes
2025-09-28 00:31:05,571 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#544 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/544/)'
2025-09-28 00:31:05,577 [ scc.git] DEBUG [detached HEAD 57371ff] merge master -Dorg -Ssuccess-only
2025-09-28 00:31:05,577 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-28 00:31:05,577 [ scc.git] INFO Overriding base-branch from master to main
2025-09-28 00:31:05,577 [ scc.repo] DEBUG ## PRs found:
2025-09-28 00:31:06,032 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2025-09-28 00:31:06,524 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None
2025-09-28 00:31:07,113 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21/comments HTTP/1.1" 200 None
2025-09-28 00:31:07,674 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None
2025-09-28 00:31:08,159 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-28 00:31:08,645 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-28 00:31:09,181 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None
2025-09-28 00:31:09,590 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/d07067753650282c9e8cdbbeae37897b7ed0d4cc?per_page=1 HTTP/1.1" 200 2
2025-09-28 00:31:09,590 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import'
2025-09-28 00:31:10,040 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2025-09-28 00:31:10,546 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2025-09-28 00:31:10,970 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2025-09-28 00:31:11,483 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-09-28 00:31:12,007 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-28 00:31:12,464 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-09-28 00:31:12,887 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2025-09-28 00:31:12,888 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-09-28 00:31:12,888 [ scc.repo] DEBUG ## Branches found:
2025-09-28 00:31:12,888 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-09-28 00:31:12,888 [ scc.git] DEBUG Get sha1 of %s
2025-09-28 00:31:12,888 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:31:12,890 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2025-09-28 00:31:12,893 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-28 00:31:12,893 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2025-09-28 00:31:12,895 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2025-09-28 00:31:12,902 [ scc.git] DEBUG Updating 8f3c313..00e0207
2025-09-28 00:31:13,624 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/20 HTTP/1.1" 200 None
2025-09-28 00:31:13,626 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2025-09-28 00:31:13,908 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-09-28 00:31:13,908 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2025-09-28 00:31:13,911 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head'
2025-09-28 00:31:14,213 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-09-28 00:31:14,213 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD
2025-09-28 00:31:14,217 [ scc.git] DEBUG ## Unique users: []
2025-09-28 00:31:14,217 [ scc.git] DEBUG Get sha1 of %s
2025-09-28 00:31:14,217 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:31:14,219 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-09-28 00:31:14,222 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:31:14,224 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-09-28 00:31:14,231 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2025-09-28 00:31:14,231 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2025-09-28 00:31:14,231 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2025-09-28 00:31:14,231 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-09-28 00:31:14,232 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-09-28 00:31:14,234 [ scc.git] DEBUG Calling 'git reset --hard 00e02072dc29b04eba14c080ca8a0175a1499c15'
2025-09-28 00:31:14,237 [ scc.git] DEBUG HEAD is now at 00e0207 Merge pull request #20 from will-moore/zarr_python_v3
2025-09-28 00:31:14,399 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-28 00:31:14,400 [ scc.git] DEBUG Calling 'git merge-base 00e02072dc29b04eba14c080ca8a0175a1499c15 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-09-28 00:31:14,402 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..00e02072dc29b04eba14c080ca8a0175a1499c15'
2025-09-28 00:31:14,405 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#544](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/544/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/544/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2025-09-28 00:31:14,407 [ scc.config] DEBUG Found github.token
2025-09-28 00:31:14,407 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2025-09-28 00:31:14,407 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2025-09-28 00:31:14,410 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:31:14,412 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2025-09-28 00:31:14,419 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2025-09-28 00:31:14,420 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-28 00:31:14,422 [ scc.git] DEBUG README.rst | 3 +
2025-09-28 00:31:14,422 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++
2025-09-28 00:31:14,422 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 +
2025-09-28 00:31:14,422 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++-
2025-09-28 00:31:14,423 [ scc.git] DEBUG setup.py | 5 +-
2025-09-28 00:31:14,423 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-)
2025-09-28 00:31:14,423 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html
2025-09-28 00:31:14,796 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-28 00:31:14,796 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-28 00:31:14,833 [ scc.git] DEBUG Get sha1 of %s
2025-09-28 00:31:14,833 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:31:14,835 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-28 00:31:14,871 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-28 00:31:14,874 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f24da3f5e90> has no local changes
2025-09-28 00:31:14,874 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..00e0207
Previously merged:
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#544 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/544/)'
2025-09-28 00:31:14,879 [ scc.git] DEBUG [detached HEAD e6fc63d] merge master -Dorg -Ssuccess-only
2025-09-28 00:31:14,879 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-28 00:31:14,880 [ scc.repo] DEBUG ## PRs found:
2025-09-28 00:31:15,264 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 None
2025-09-28 00:31:15,728 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/issues/25 HTTP/1.1" 200 None
2025-09-28 00:31:15,729 [ scc.repo] DEBUG # ... Include label: dependencies
2025-09-28 00:31:16,292 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None
2025-09-28 00:31:16,870 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-28 00:31:17,346 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-28 00:31:17,797 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None
2025-09-28 00:31:18,230 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/statuses/c73bedb717b9ecce0af666245d3486aa5a2dafe9?per_page=1 HTTP/1.1" 200 2
2025-09-28 00:31:18,230 [ scc.repo] DEBUG - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-28 00:31:18,230 [ scc.repo] DEBUG ## Branches found:
2025-09-28 00:31:18,230 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-09-28 00:31:18,230 [ scc.git] DEBUG Get sha1 of %s
2025-09-28 00:31:18,230 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:31:18,232 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-28 00:31:18,234 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-28 00:31:18,234 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-28 00:31:18,237 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-28 00:31:18,239 [ scc.git] DEBUG Already up to date.
2025-09-28 00:31:18,240 [ scc.git] DEBUG Calling 'git fetch origin pull/25/head'
2025-09-28 00:31:18,535 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-weberror
2025-09-28 00:31:18,535 [ scc.git] DEBUG * branch refs/pull/25/head -> FETCH_HEAD
2025-09-28 00:31:18,539 [ scc.git] DEBUG ## Unique users: []
2025-09-28 00:31:18,539 [ scc.git] DEBUG Get sha1 of %s
2025-09-28 00:31:18,539 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:31:18,541 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2025-09-28 00:31:18,543 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:31:18,545 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2025-09-28 00:31:18,551 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-28 00:31:18,554 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-09-28 00:31:18,554 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-09-28 00:31:18,703 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-28 00:31:18,703 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-28 00:31:18,740 [ scc.git] DEBUG Get sha1 of %s
2025-09-28 00:31:18,740 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:31:18,742 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-28 00:31:18,777 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-28 00:31:18,779 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f24da3cc850> has no local changes
2025-09-28 00:31:18,780 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#544 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/544/)'
2025-09-28 00:31:18,785 [ scc.git] DEBUG [detached HEAD 1d7fb10] merge master -Dorg -Ssuccess-only
2025-09-28 00:31:18,785 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-28 00:31:18,785 [ scc.repo] DEBUG ## PRs found:
2025-09-28 00:31:19,188 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 None
2025-09-28 00:31:19,681 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/issues/37 HTTP/1.1" 200 None
2025-09-28 00:31:19,682 [ scc.repo] DEBUG # ... Include label: dependencies
2025-09-28 00:31:20,246 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None
2025-09-28 00:31:20,748 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-28 00:31:21,287 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-28 00:31:21,772 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None
2025-09-28 00:31:22,190 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/statuses/8cf5f7e65ae8e945b134e41e77bc13a785aff478?per_page=1 HTTP/1.1" 200 2
2025-09-28 00:31:22,190 [ scc.repo] DEBUG - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-28 00:31:22,190 [ scc.repo] DEBUG ## Branches found:
2025-09-28 00:31:22,190 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-09-28 00:31:22,190 [ scc.git] DEBUG Get sha1 of %s
2025-09-28 00:31:22,190 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:31:22,193 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-28 00:31:22,195 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-28 00:31:22,195 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-28 00:31:22,197 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-28 00:31:22,200 [ scc.git] DEBUG Already up to date.
2025-09-28 00:31:22,200 [ scc.git] DEBUG Calling 'git fetch origin pull/37/head'
2025-09-28 00:31:22,499 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-webtest
2025-09-28 00:31:22,500 [ scc.git] DEBUG * branch refs/pull/37/head -> FETCH_HEAD
2025-09-28 00:31:22,503 [ scc.git] DEBUG ## Unique users: []
2025-09-28 00:31:22,503 [ scc.git] DEBUG Get sha1 of %s
2025-09-28 00:31:22,503 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:31:22,505 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2025-09-28 00:31:22,507 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:31:22,509 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 37 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2025-09-28 00:31:22,515 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-28 00:31:22,518 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-09-28 00:31:22,518 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-09-28 00:31:22,653 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-28 00:31:22,654 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-28 00:31:22,689 [ scc.git] DEBUG Get sha1 of %s
2025-09-28 00:31:22,689 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:31:22,691 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-28 00:31:22,728 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-28 00:31:22,731 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f24da347090> has no local changes
2025-09-28 00:31:22,731 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#544 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/544/)'
2025-09-28 00:31:22,736 [ scc.git] DEBUG [detached HEAD 61be6c4] merge master -Dorg -Ssuccess-only
2025-09-28 00:31:22,737 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-28 00:31:22,737 [ scc.repo] DEBUG ## PRs found:
2025-09-28 00:31:23,229 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 None
2025-09-28 00:31:23,738 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100 HTTP/1.1" 200 None
2025-09-28 00:31:24,194 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100/comments HTTP/1.1" 200 None
2025-09-28 00:31:24,721 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-09-28 00:31:25,152 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-28 00:31:25,599 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-09-28 00:31:26,019 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/statuses/b4abacf0cb9b7aee150761d320bdbb80762cd6e7?per_page=1 HTTP/1.1" 200 2
2025-09-28 00:31:26,019 [ scc.repo] DEBUG - PR 100 dominikl 'Run tests properly'
2025-09-28 00:31:26,019 [ scc.repo] DEBUG ## Branches found:
2025-09-28 00:31:26,019 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-09-28 00:31:26,020 [ scc.git] DEBUG Get sha1 of %s
2025-09-28 00:31:26,020 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:31:26,022 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-28 00:31:26,024 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-28 00:31:26,024 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-28 00:31:26,026 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-28 00:31:26,029 [ scc.git] DEBUG Already up to date.
2025-09-28 00:31:26,029 [ scc.git] DEBUG Calling 'git fetch origin pull/100/head'
2025-09-28 00:31:26,314 [ scc.git] DEBUG From https://github.com/ome/rOMERO-gateway
2025-09-28 00:31:26,314 [ scc.git] DEBUG * branch refs/pull/100/head -> FETCH_HEAD
2025-09-28 00:31:26,317 [ scc.git] DEBUG ## Unique users: []
2025-09-28 00:31:26,318 [ scc.git] DEBUG Get sha1 of %s
2025-09-28 00:31:26,318 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:31:26,320 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-09-28 00:31:26,322 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:31:26,324 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 100 (Run tests properly) b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-09-28 00:31:26,331 [ scc.git] DEBUG Auto-merging Dockerfile
2025-09-28 00:31:26,331 [ scc.git] DEBUG CONFLICT (content): Merge conflict in Dockerfile
2025-09-28 00:31:26,332 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-09-28 00:31:26,332 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-09-28 00:31:26,334 [ scc.git] DEBUG Calling 'git reset --hard 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-09-28 00:31:26,340 [ scc.git] DEBUG HEAD is now at 7b5d64d Merge pull request #106 from dominikl/add_examples_2
2025-09-28 00:31:26,483 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-28 00:31:26,484 [ scc.git] DEBUG Calling 'git merge-base 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-09-28 00:31:26,486 [ scc.git] DEBUG Calling 'git diff --name-only 8b424d2d21f70d07729c4da38a9241b9a9f483be..7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-09-28 00:31:26,488 [ scc.git] INFO - PR 100 dominikl 'Run tests properly'
Conflicting PR. Removed from build [OMERO-plugins-push#544](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/544/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/544/consoleText) for more details.
Possible conflicts:
- Upstream changes
- Dockerfile
--conflicts
2025-09-28 00:31:26,490 [ scc.config] DEBUG Found github.token
2025-09-28 00:31:26,490 [ scc.git] DEBUG Not adding comment to issue #100, already --conflicts.
2025-09-28 00:31:26,490 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-28 00:31:26,527 [ scc.git] DEBUG Get sha1 of %s
2025-09-28 00:31:26,527 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:31:26,529 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-28 00:31:26,563 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-28 00:31:26,566 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f24da4137d0> has no local changes
2025-09-28 00:31:26,566 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Generated by OMERO-plugins-push#544 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/544/)'
2025-09-28 00:31:26,571 [ scc.git] DEBUG [detached HEAD cbc961e] merge master -Dorg -Ssuccess-only
2025-09-28 00:31:26,572 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-28 00:31:26,572 [ scc.git] INFO Overriding base-branch from master to develop
2025-09-28 00:31:26,572 [ scc.repo] DEBUG ## PRs found:
2025-09-28 00:31:27,096 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2025-09-28 00:31:27,553 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223 HTTP/1.1" 200 None
2025-09-28 00:31:28,001 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223/comments HTTP/1.1" 200 None
2025-09-28 00:31:28,483 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-09-28 00:31:28,970 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-28 00:31:29,445 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-28 00:31:29,879 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-09-28 00:31:30,292 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/d8b2bbd6f5066de883a41ba5338662d60472b0d8?per_page=1 HTTP/1.1" 200 2
2025-09-28 00:31:30,293 [ scc.repo] DEBUG - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-09-28 00:31:30,741 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202 HTTP/1.1" 200 None
2025-09-28 00:31:31,211 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202/comments HTTP/1.1" 200 None
2025-09-28 00:31:31,636 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-09-28 00:31:32,126 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-28 00:31:32,586 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-09-28 00:31:33,015 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/1fd6030669613cdb8879cfe6395db8c820fdcf19?per_page=1 HTTP/1.1" 200 2
2025-09-28 00:31:33,016 [ scc.repo] DEBUG - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-09-28 00:31:33,551 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None
2025-09-28 00:31:34,027 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None
2025-09-28 00:31:34,504 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103 HTTP/1.1" 200 None
2025-09-28 00:31:34,978 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103/comments HTTP/1.1" 200 None
2025-09-28 00:31:34,979 [ scc.repo] DEBUG ## Branches found:
2025-09-28 00:31:34,979 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-09-28 00:31:34,980 [ scc.git] DEBUG Get sha1 of %s
2025-09-28 00:31:34,980 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:31:34,982 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2025-09-28 00:31:34,984 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-28 00:31:34,984 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2025-09-28 00:31:34,987 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2025-09-28 00:31:34,996 [ scc.git] DEBUG Updating 4b4c755..03b9116
2025-09-28 00:31:35,597 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/228 HTTP/1.1" 200 None
2025-09-28 00:31:36,192 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2025-09-28 00:31:36,838 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2025-09-28 00:31:36,839 [ scc.git] DEBUG Calling 'git fetch origin pull/202/head'
2025-09-28 00:31:37,139 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-09-28 00:31:37,139 [ scc.git] DEBUG * branch refs/pull/202/head -> FETCH_HEAD
2025-09-28 00:31:37,144 [ scc.git] DEBUG Calling 'git fetch origin pull/223/head'
2025-09-28 00:31:37,430 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-09-28 00:31:37,430 [ scc.git] DEBUG * branch refs/pull/223/head -> FETCH_HEAD
2025-09-28 00:31:37,434 [ scc.git] DEBUG ## Unique users: []
2025-09-28 00:31:37,434 [ scc.git] DEBUG Get sha1 of %s
2025-09-28 00:31:37,434 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:31:37,436 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-09-28 00:31:37,442 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:31:37,444 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 202 (Add Plate support to KeyVal_to_csv.py) 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-09-28 00:31:37,453 [ scc.git] DEBUG CONFLICT (modify/delete): omero/annotation_scripts/KeyVal_to_csv.py deleted in HEAD and modified in 1fd6030669613cdb8879cfe6395db8c820fdcf19. Version 1fd6030669613cdb8879cfe6395db8c820fdcf19 of omero/annotation_scripts/KeyVal_to_csv.py left in tree.
2025-09-28 00:31:37,454 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-09-28 00:31:37,454 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-09-28 00:31:37,456 [ scc.git] DEBUG Calling 'git reset --hard 03b9116196e1a799dd18a666559613d912be01a5'
2025-09-28 00:31:37,460 [ scc.git] DEBUG HEAD is now at 03b9116 Merge pull request #228 from ome/dependabot/github_actions/dot-github/workflows/pypa/gh-action-pypi-publish-1.13.0
2025-09-28 00:31:37,603 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-28 00:31:37,604 [ scc.git] DEBUG Calling 'git merge-base 03b9116196e1a799dd18a666559613d912be01a5 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-09-28 00:31:37,608 [ scc.git] DEBUG Calling 'git diff --name-only a90f59802f6752ad74badec5c0c1d6b0c9c43b15..03b9116196e1a799dd18a666559613d912be01a5'
2025-09-28 00:31:37,612 [ scc.git] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Conflicting PR. Removed from build [OMERO-plugins-push#544](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/544/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/544/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero/annotation_scripts/KeyVal_to_csv.py
--conflicts
2025-09-28 00:31:37,614 [ scc.config] DEBUG Found github.token
2025-09-28 00:31:37,614 [ scc.git] DEBUG Not adding comment to issue #202, already --conflicts.
2025-09-28 00:31:37,614 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-09-28 00:31:37,618 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:31:37,620 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 223 (don't attempt ROI stats on big images) d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-09-28 00:31:37,628 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-28 00:31:37,631 [ scc.git] DEBUG omero/export_scripts/Batch_ROI_Export.py | 9 ++++++++-
2025-09-28 00:31:37,631 [ scc.git] DEBUG 1 file changed, 8 insertions(+), 1 deletion(-)
2025-09-28 00:31:38,001 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-28 00:31:38,002 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-28 00:31:38,039 [ scc.git] DEBUG Get sha1 of %s
2025-09-28 00:31:38,039 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-28 00:31:38,041 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-28 00:31:38,077 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-28 00:31:38,080 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f24da41c190> has no local changes
2025-09-28 00:31:38,080 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..03b9116
Previously merged:
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#544 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/544/)'
2025-09-28 00:31:38,085 [ scc.git] DEBUG [detached HEAD 4f32a4e] merge master -Dorg -Ssuccess-only
2025-09-28 00:31:38,086 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-28 00:31:38,086 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-28 00:31:38,154 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2025-09-28 00:31:38,398 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-28 00:31:38,403 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2025-09-28 00:31:38,405 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2025-09-28 00:31:38,787 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-28 00:31:38,792 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2025-09-28 00:31:38,793 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2025-09-28 00:31:39,175 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-28 00:31:39,180 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2025-09-28 00:31:39,182 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2025-09-28 00:31:39,561 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-28 00:31:39,567 [ scc.config] DEBUG Found submodule.omero-figure.url
2025-09-28 00:31:39,963 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-28 00:31:39,968 [ scc.config] DEBUG Found submodule.omero-figure.branch
2025-09-28 00:31:39,970 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2025-09-28 00:31:40,364 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-28 00:31:40,368 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2025-09-28 00:31:40,370 [ scc.config] DEBUG Found submodule.omero-gallery.url
2025-09-28 00:31:40,780 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-28 00:31:40,785 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2025-09-28 00:31:40,787 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2025-09-28 00:31:41,167 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-28 00:31:41,171 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2025-09-28 00:31:41,173 [ scc.config] DEBUG Found submodule.omero-mapr.url
2025-09-28 00:31:41,569 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-28 00:31:41,574 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2025-09-28 00:31:41,576 [ scc.config] DEBUG Found submodule.omero-metadata.url
2025-09-28 00:31:41,961 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-28 00:31:41,966 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2025-09-28 00:31:41,967 [ scc.config] DEBUG Found submodule.omero-parade.url
2025-09-28 00:31:42,378 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-28 00:31:42,383 [ scc.config] DEBUG Found submodule.omero-parade.branch
2025-09-28 00:31:42,385 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2025-09-28 00:31:42,764 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-28 00:31:42,768 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2025-09-28 00:31:42,770 [ scc.config] DEBUG Found submodule.omero-rois.url
2025-09-28 00:31:43,156 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-28 00:31:43,162 [ scc.config] DEBUG Found submodule.omero-signup.url
2025-09-28 00:31:43,563 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-28 00:31:43,569 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2025-09-28 00:31:43,960 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-28 00:31:43,964 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2025-09-28 00:31:43,966 [ scc.config] DEBUG Found submodule.omero-upload.url
2025-09-28 00:31:44,349 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-28 00:31:44,355 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2025-09-28 00:31:44,741 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-28 00:31:44,747 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2025-09-28 00:31:45,137 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-28 00:31:45,141 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2025-09-28 00:31:45,142 [ scc.config] DEBUG Found submodule.omero-weberror.url
2025-09-28 00:31:45,520 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-28 00:31:45,524 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2025-09-28 00:31:45,526 [ scc.config] DEBUG Found submodule.omero-webtest.url
2025-09-28 00:31:45,920 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-28 00:31:45,924 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2025-09-28 00:31:45,926 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2025-09-28 00:31:46,305 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-28 00:31:46,309 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2025-09-28 00:31:46,311 [ scc.config] DEBUG Found submodule.scripts.url
2025-09-28 00:31:46,708 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-28 00:31:46,712 [ scc.config] DEBUG Found submodule.scripts.branch
2025-09-28 00:31:46,712 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-28 00:31:46,787 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f24dc45e3d0> has local changes
2025-09-28 00:31:46,787 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Merged PRs:
- PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-cli-render
Excluded PRs:
- PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Already up to date.
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
- PR 69 dominikl 'Fix help text for impo/export commands'
- PR 71 dominikl 'Escape slash character in image names'
- PR 73 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 174 will-moore 'Skip wells' (stage: draft)
- PR 170 will-moore 'Use ome zarr models py' (stage: draft)
- PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
- PR 167 dominikl 'Add extinfo command' (stage: draft)
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..37ea700
Previously merged:
- PR 180 will-moore 'Import command'
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py'
Conflicting PRs (not included):
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
- PR 181 will-moore 'Add labels support for import'
- PR 182 will-moore 'Revert "Remove support for Plate import"'
Repository: ome/omero-figure
Excluded PRs:
- PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
- PR 619 will-moore 'OME-Zarr support' (stage: draft)
- PR 543 will-moore 'Plate well labels' (exclude comment)
Updating 9cc36cde..baab5c06
Previously merged:
- PR 612 will-moore 'Script version'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 616 Rdornier 'Fix labels around border'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 600 Rdornier 'Label on rois'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 642 dependabot[bot] 'Bump vite from 6.2.6 to 6.3.6'
Conflicting PRs (not included):
- PR 637 Rdornier 'Fix scalebar position'
- PR 643 Rdornier 'Shape scaling'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
- PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 508 will-moore 'Broadcast channel demo' (stage: draft)
- PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..bb94cf8
Previously merged:
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
Conflicting PRs (not included):
- PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
- PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
- PR 76 will-moore 'Run cli deps'
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..00e0207
Previously merged:
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..03b9116
Previously merged:
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#544 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/544/)'
2025-09-28 00:31:46,796 [ scc.git] DEBUG [detached HEAD 221849d] merge master -Dorg -Ssuccess-only
2025-09-28 00:31:46,797 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-)
2025-09-28 00:31:46,797 [ scc.merge] INFO Repository: ome/omero-plugins
2025-09-28 00:31:46,797 [ scc.merge] INFO Already up to date.
2025-09-28 00:31:46,797 [ scc.merge] INFO
2025-09-28 00:31:46,797 [ scc.merge] INFO Merged PRs:
2025-09-28 00:31:46,797 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2025-09-28 00:31:46,797 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2025-09-28 00:31:46,797 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2025-09-28 00:31:46,797 [ scc.merge] INFO
2025-09-28 00:31:46,797 [ scc.merge] INFO Repository: ome/minimal-omero-client
2025-09-28 00:31:46,797 [ scc.merge] INFO Already up to date.
2025-09-28 00:31:46,797 [ scc.merge] INFO
2025-09-28 00:31:46,797 [ scc.merge] INFO
2025-09-28 00:31:46,797 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2025-09-28 00:31:46,797 [ scc.merge] INFO Excluded PRs:
2025-09-28 00:31:46,797 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2025-09-28 00:31:46,797 [ scc.merge] INFO Already up to date.
2025-09-28 00:31:46,797 [ scc.merge] INFO
2025-09-28 00:31:46,797 [ scc.merge] INFO Merged PRs:
2025-09-28 00:31:46,797 [ scc.merge] INFO - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-28 00:31:46,797 [ scc.merge] INFO
2025-09-28 00:31:46,797 [ scc.merge] INFO Repository: ome/omero-cli-render
2025-09-28 00:31:46,797 [ scc.merge] INFO Excluded PRs:
2025-09-28 00:31:46,797 [ scc.merge] INFO - PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
2025-09-28 00:31:46,797 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2025-09-28 00:31:46,797 [ scc.merge] INFO Already up to date.
2025-09-28 00:31:46,797 [ scc.merge] INFO
2025-09-28 00:31:46,797 [ scc.merge] INFO Merged PRs:
2025-09-28 00:31:46,797 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2025-09-28 00:31:46,797 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2025-09-28 00:31:46,797 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2025-09-28 00:31:46,797 [ scc.merge] INFO - PR 73 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-28 00:31:46,797 [ scc.merge] INFO
2025-09-28 00:31:46,797 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2025-09-28 00:31:46,797 [ scc.merge] INFO Excluded PRs:
2025-09-28 00:31:46,797 [ scc.merge] INFO - PR 174 will-moore 'Skip wells' (stage: draft)
2025-09-28 00:31:46,798 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft)
2025-09-28 00:31:46,798 [ scc.merge] INFO - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
2025-09-28 00:31:46,798 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft)
2025-09-28 00:31:46,798 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2025-09-28 00:31:46,798 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-09-28 00:31:46,798 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2025-09-28 00:31:46,798 [ scc.merge] INFO Updating 11d3587..37ea700
2025-09-28 00:31:46,798 [ scc.merge] INFO Previously merged:
2025-09-28 00:31:46,798 [ scc.merge] INFO - PR 180 will-moore 'Import command'
2025-09-28 00:31:46,798 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2025-09-28 00:31:46,798 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2025-09-28 00:31:46,798 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2025-09-28 00:31:46,798 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2025-09-28 00:31:46,798 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2025-09-28 00:31:46,798 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2025-09-28 00:31:46,798 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-28 00:31:46,798 [ scc.merge] INFO
2025-09-28 00:31:46,798 [ scc.merge] INFO Merged PRs:
2025-09-28 00:31:46,798 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py'
2025-09-28 00:31:46,798 [ scc.merge] INFO
2025-09-28 00:31:46,798 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-28 00:31:46,798 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2025-09-28 00:31:46,798 [ scc.merge] INFO - PR 181 will-moore 'Add labels support for import'
2025-09-28 00:31:46,798 [ scc.merge] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"'
2025-09-28 00:31:46,798 [ scc.merge] INFO
2025-09-28 00:31:46,798 [ scc.merge] INFO Repository: ome/omero-figure
2025-09-28 00:31:46,798 [ scc.merge] INFO Excluded PRs:
2025-09-28 00:31:46,798 [ scc.merge] INFO - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
2025-09-28 00:31:46,798 [ scc.merge] INFO - PR 619 will-moore 'OME-Zarr support' (stage: draft)
2025-09-28 00:31:46,798 [ scc.merge] INFO - PR 543 will-moore 'Plate well labels' (exclude comment)
2025-09-28 00:31:46,798 [ scc.merge] INFO Updating 9cc36cde..baab5c06
2025-09-28 00:31:46,798 [ scc.merge] INFO Previously merged:
2025-09-28 00:31:46,798 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2025-09-28 00:31:46,798 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2025-09-28 00:31:46,798 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2025-09-28 00:31:46,798 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2025-09-28 00:31:46,798 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2025-09-28 00:31:46,798 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2025-09-28 00:31:46,798 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2025-09-28 00:31:46,798 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2025-09-28 00:31:46,798 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-28 00:31:46,798 [ scc.merge] INFO
2025-09-28 00:31:46,798 [ scc.merge] INFO Merged PRs:
2025-09-28 00:31:46,798 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2025-09-28 00:31:46,798 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2025-09-28 00:31:46,798 [ scc.merge] INFO - PR 642 dependabot[bot] 'Bump vite from 6.2.6 to 6.3.6'
2025-09-28 00:31:46,798 [ scc.merge] INFO
2025-09-28 00:31:46,798 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-28 00:31:46,798 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2025-09-28 00:31:46,798 [ scc.merge] INFO - PR 643 Rdornier 'Shape scaling'
2025-09-28 00:31:46,799 [ scc.merge] INFO
2025-09-28 00:31:46,799 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2025-09-28 00:31:46,799 [ scc.merge] INFO Already up to date.
2025-09-28 00:31:46,799 [ scc.merge] INFO
2025-09-28 00:31:46,799 [ scc.merge] INFO Merged PRs:
2025-09-28 00:31:46,799 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2025-09-28 00:31:46,799 [ scc.merge] INFO - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-28 00:31:46,799 [ scc.merge] INFO
2025-09-28 00:31:46,799 [ scc.merge] INFO Repository: ome/omero-gallery
2025-09-28 00:31:46,799 [ scc.merge] INFO Already up to date.
2025-09-28 00:31:46,799 [ scc.merge] INFO
2025-09-28 00:31:46,799 [ scc.merge] INFO Merged PRs:
2025-09-28 00:31:46,799 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2025-09-28 00:31:46,799 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2025-09-28 00:31:46,799 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2025-09-28 00:31:46,799 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2025-09-28 00:31:46,799 [ scc.merge] INFO
2025-09-28 00:31:46,799 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-28 00:31:46,799 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2025-09-28 00:31:46,799 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2025-09-28 00:31:46,799 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2025-09-28 00:31:46,799 [ scc.merge] INFO
2025-09-28 00:31:46,799 [ scc.merge] INFO Repository: ome/omero-iviewer
2025-09-28 00:31:46,799 [ scc.merge] INFO Excluded PRs:
2025-09-28 00:31:46,799 [ scc.merge] INFO - PR 508 will-moore 'Broadcast channel demo' (stage: draft)
2025-09-28 00:31:46,799 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
2025-09-28 00:31:46,799 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
2025-09-28 00:31:46,799 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2025-09-28 00:31:46,799 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2025-09-28 00:31:46,799 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure)
2025-09-28 00:31:46,799 [ scc.merge] INFO Updating 7a798ce..bb94cf8
2025-09-28 00:31:46,799 [ scc.merge] INFO Previously merged:
2025-09-28 00:31:46,799 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-28 00:31:46,799 [ scc.merge] INFO
2025-09-28 00:31:46,799 [ scc.merge] INFO Merged PRs:
2025-09-28 00:31:46,799 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix'
2025-09-28 00:31:46,799 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2025-09-28 00:31:46,799 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2025-09-28 00:31:46,799 [ scc.merge] INFO - PR 499 dependabot[bot] 'Bump nanoid and mocha'
2025-09-28 00:31:46,799 [ scc.merge] INFO
2025-09-28 00:31:46,799 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-28 00:31:46,799 [ scc.merge] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
2025-09-28 00:31:46,799 [ scc.merge] INFO
2025-09-28 00:31:46,799 [ scc.merge] INFO Repository: ome/omero-mapr
2025-09-28 00:31:46,799 [ scc.merge] INFO Excluded PRs:
2025-09-28 00:31:46,799 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2025-09-28 00:31:46,799 [ scc.merge] INFO Already up to date.
2025-09-28 00:31:46,799 [ scc.merge] INFO
2025-09-28 00:31:46,799 [ scc.merge] INFO Merged PRs:
2025-09-28 00:31:46,799 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient'
2025-09-28 00:31:46,799 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-28 00:31:46,799 [ scc.merge] INFO
2025-09-28 00:31:46,800 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-28 00:31:46,800 [ scc.merge] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-28 00:31:46,800 [ scc.merge] INFO
2025-09-28 00:31:46,800 [ scc.merge] INFO Repository: ome/omero-metadata
2025-09-28 00:31:46,800 [ scc.merge] INFO Updating 3cd120c..55060a2
2025-09-28 00:31:46,800 [ scc.merge] INFO Previously merged:
2025-09-28 00:31:46,800 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-28 00:31:46,800 [ scc.merge] INFO
2025-09-28 00:31:46,800 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-28 00:31:46,800 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-09-28 00:31:46,800 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-09-28 00:31:46,800 [ scc.merge] INFO
2025-09-28 00:31:46,800 [ scc.merge] INFO Repository: ome/omero-parade
2025-09-28 00:31:46,800 [ scc.merge] INFO Excluded PRs:
2025-09-28 00:31:46,800 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2025-09-28 00:31:46,800 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2025-09-28 00:31:46,800 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2025-09-28 00:31:46,800 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2025-09-28 00:31:46,800 [ scc.merge] INFO Already up to date.
2025-09-28 00:31:46,800 [ scc.merge] INFO
2025-09-28 00:31:46,800 [ scc.merge] INFO Merged PRs:
2025-09-28 00:31:46,800 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-09-28 00:31:46,800 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-09-28 00:31:46,800 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-28 00:31:46,800 [ scc.merge] INFO
2025-09-28 00:31:46,800 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2025-09-28 00:31:46,800 [ scc.merge] INFO Already up to date.
2025-09-28 00:31:46,800 [ scc.merge] INFO
2025-09-28 00:31:46,800 [ scc.merge] INFO Merged PRs:
2025-09-28 00:31:46,800 [ scc.merge] INFO - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-28 00:31:46,800 [ scc.merge] INFO
2025-09-28 00:31:46,800 [ scc.merge] INFO Repository: ome/omero-rois
2025-09-28 00:31:46,800 [ scc.merge] INFO Excluded PRs:
2025-09-28 00:31:46,800 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-09-28 00:31:46,800 [ scc.merge] INFO Already up to date.
2025-09-28 00:31:46,800 [ scc.merge] INFO
2025-09-28 00:31:46,800 [ scc.merge] INFO Merged PRs:
2025-09-28 00:31:46,800 [ scc.merge] INFO - PR 33 jo-mueller 'Add roi to array functions'
2025-09-28 00:31:46,800 [ scc.merge] INFO - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-28 00:31:46,800 [ scc.merge] INFO
2025-09-28 00:31:46,800 [ scc.merge] INFO Repository: ome/omero-signup
2025-09-28 00:31:46,800 [ scc.merge] INFO Already up to date.
2025-09-28 00:31:46,800 [ scc.merge] INFO
2025-09-28 00:31:46,800 [ scc.merge] INFO Merged PRs:
2025-09-28 00:31:46,800 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-28 00:31:46,800 [ scc.merge] INFO
2025-09-28 00:31:46,800 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-28 00:31:46,800 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2025-09-28 00:31:46,800 [ scc.merge] INFO
2025-09-28 00:31:46,800 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2025-09-28 00:31:46,800 [ scc.merge] INFO Excluded PRs:
2025-09-28 00:31:46,800 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2025-09-28 00:31:46,801 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
2025-09-28 00:31:46,801 [ scc.merge] INFO - PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
2025-09-28 00:31:46,801 [ scc.merge] INFO Already up to date.
2025-09-28 00:31:46,801 [ scc.merge] INFO
2025-09-28 00:31:46,801 [ scc.merge] INFO Merged PRs:
2025-09-28 00:31:46,801 [ scc.merge] INFO - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-09-28 00:31:46,801 [ scc.merge] INFO - PR 76 will-moore 'Run cli deps'
2025-09-28 00:31:46,801 [ scc.merge] INFO
2025-09-28 00:31:46,801 [ scc.merge] INFO Repository: ome/omero-upload
2025-09-28 00:31:46,801 [ scc.merge] INFO Already up to date.
2025-09-28 00:31:46,801 [ scc.merge] INFO
2025-09-28 00:31:46,801 [ scc.merge] INFO Merged PRs:
2025-09-28 00:31:46,801 [ scc.merge] INFO - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-28 00:31:46,801 [ scc.merge] INFO
2025-09-28 00:31:46,801 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2025-09-28 00:31:46,801 [ scc.merge] INFO Updating deab817..160d894
2025-09-28 00:31:46,801 [ scc.merge] INFO Previously merged:
2025-09-28 00:31:46,801 [ scc.merge] INFO - PR 20 jburel 'Build'
2025-09-28 00:31:46,801 [ scc.merge] INFO
2025-09-28 00:31:46,801 [ scc.merge] INFO Merged PRs:
2025-09-28 00:31:46,801 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-28 00:31:46,801 [ scc.merge] INFO
2025-09-28 00:31:46,801 [ scc.merge] INFO Repository: ome/omero-web-zarr
2025-09-28 00:31:46,801 [ scc.merge] INFO Excluded PRs:
2025-09-28 00:31:46,801 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2025-09-28 00:31:46,801 [ scc.merge] INFO Updating 8f3c313..00e0207
2025-09-28 00:31:46,801 [ scc.merge] INFO Previously merged:
2025-09-28 00:31:46,801 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2025-09-28 00:31:46,801 [ scc.merge] INFO
2025-09-28 00:31:46,801 [ scc.merge] INFO Merged PRs:
2025-09-28 00:31:46,801 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import'
2025-09-28 00:31:46,801 [ scc.merge] INFO
2025-09-28 00:31:46,801 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-28 00:31:46,801 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-09-28 00:31:46,801 [ scc.merge] INFO
2025-09-28 00:31:46,801 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2025-09-28 00:31:46,801 [ scc.merge] INFO Already up to date.
2025-09-28 00:31:46,801 [ scc.merge] INFO
2025-09-28 00:31:46,801 [ scc.merge] INFO Merged PRs:
2025-09-28 00:31:46,801 [ scc.merge] INFO - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-28 00:31:46,801 [ scc.merge] INFO
2025-09-28 00:31:46,801 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2025-09-28 00:31:46,801 [ scc.merge] INFO Already up to date.
2025-09-28 00:31:46,801 [ scc.merge] INFO
2025-09-28 00:31:46,801 [ scc.merge] INFO Merged PRs:
2025-09-28 00:31:46,801 [ scc.merge] INFO - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-28 00:31:46,801 [ scc.merge] INFO
2025-09-28 00:31:46,801 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2025-09-28 00:31:46,801 [ scc.merge] INFO Already up to date.
2025-09-28 00:31:46,801 [ scc.merge] INFO
2025-09-28 00:31:46,801 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-28 00:31:46,802 [ scc.merge] INFO - PR 100 dominikl 'Run tests properly'
2025-09-28 00:31:46,802 [ scc.merge] INFO
2025-09-28 00:31:46,802 [ scc.merge] INFO Repository: ome/scripts
2025-09-28 00:31:46,802 [ scc.merge] INFO Excluded PRs:
2025-09-28 00:31:46,802 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
2025-09-28 00:31:46,802 [ scc.merge] INFO - PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
2025-09-28 00:31:46,802 [ scc.merge] INFO Updating 4b4c755..03b9116
2025-09-28 00:31:46,802 [ scc.merge] INFO Previously merged:
2025-09-28 00:31:46,802 [ scc.merge] INFO - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
2025-09-28 00:31:46,802 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2025-09-28 00:31:46,802 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2025-09-28 00:31:46,802 [ scc.merge] INFO
2025-09-28 00:31:46,802 [ scc.merge] INFO Merged PRs:
2025-09-28 00:31:46,802 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-09-28 00:31:46,802 [ scc.merge] INFO
2025-09-28 00:31:46,802 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-28 00:31:46,802 [ scc.merge] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-09-28 00:31:46,802 [ scc.merge] INFO
2025-09-28 00:31:46,802 [ scc.merge] DEBUG Cleaning remote branches created for merging
2025-09-28 00:31:46,802 [ scc.git] DEBUG Calling 'git remote'
2025-09-28 00:31:46,804 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2025-09-28 00:31:46,804 [ scc.git] DEBUG Calling 'git remote'
2025-09-28 00:31:46,806 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-28 00:31:46,806 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2025-09-28 00:31:46,806 [ scc.git] DEBUG Calling 'git remote'
2025-09-28 00:31:46,808 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-28 00:31:46,808 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2025-09-28 00:31:46,808 [ scc.git] DEBUG Calling 'git remote'
2025-09-28 00:31:46,810 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-28 00:31:46,810 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2025-09-28 00:31:46,810 [ scc.git] DEBUG Calling 'git remote'
2025-09-28 00:31:46,812 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-28 00:31:46,812 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2025-09-28 00:31:46,812 [ scc.git] DEBUG Calling 'git remote'
2025-09-28 00:31:46,814 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-28 00:31:46,814 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2025-09-28 00:31:46,814 [ scc.git] DEBUG Calling 'git remote'
2025-09-28 00:31:46,816 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-28 00:31:46,816 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2025-09-28 00:31:46,816 [ scc.git] DEBUG Calling 'git remote'
2025-09-28 00:31:46,818 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-28 00:31:46,818 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2025-09-28 00:31:46,818 [ scc.git] DEBUG Calling 'git remote'
2025-09-28 00:31:46,820 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-28 00:31:46,820 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2025-09-28 00:31:46,820 [ scc.git] DEBUG Calling 'git remote'
2025-09-28 00:31:46,822 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-28 00:31:46,822 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-09-28 00:31:46,822 [ scc.git] DEBUG Calling 'git remote'
2025-09-28 00:31:46,824 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-28 00:31:46,824 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-09-28 00:31:46,824 [ scc.git] DEBUG Calling 'git remote'
2025-09-28 00:31:46,826 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-28 00:31:46,826 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-09-28 00:31:46,826 [ scc.git] DEBUG Calling 'git remote'
2025-09-28 00:31:46,828 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-28 00:31:46,828 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-09-28 00:31:46,828 [ scc.git] DEBUG Calling 'git remote'
2025-09-28 00:31:46,830 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-28 00:31:46,830 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-09-28 00:31:46,830 [ scc.git] DEBUG Calling 'git remote'
2025-09-28 00:31:46,832 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-28 00:31:46,832 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-09-28 00:31:46,832 [ scc.git] DEBUG Calling 'git remote'
2025-09-28 00:31:46,834 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-28 00:31:46,834 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-09-28 00:31:46,834 [ scc.git] DEBUG Calling 'git remote'
2025-09-28 00:31:46,836 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-28 00:31:46,836 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-09-28 00:31:46,836 [ scc.git] DEBUG Calling 'git remote'
2025-09-28 00:31:46,837 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-28 00:31:46,837 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-09-28 00:31:46,838 [ scc.git] DEBUG Calling 'git remote'
2025-09-28 00:31:46,839 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-28 00:31:46,839 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-09-28 00:31:46,839 [ scc.git] DEBUG Calling 'git remote'
2025-09-28 00:31:46,841 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-28 00:31:46,841 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-09-28 00:31:46,841 [ scc.git] DEBUG Calling 'git remote'
2025-09-28 00:31:46,843 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-28 00:31:46,843 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-09-28 00:31:46,843 [ scc.git] DEBUG Calling 'git remote'
2025-09-28 00:31:46,845 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-28 00:31:46,845 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-09-28 00:31:46,845 [ scc.git] DEBUG Calling 'git remote'
2025-09-28 00:31:46,847 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.10.4-SNAPSHOT
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD c205246] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798ce
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD c966e07] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2025-09-28 00:32:32,603 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2025-09-28 00:32:41,707 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2025-09-28 00:32:44,194 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-09-28 00:32:48,874 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-09-28 00:33:28,199 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
[Pipeline] archiveArtifacts
Archiving artifacts
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: SUCCESS
![[Jenkins]](/jenkins/static/9161e9ff/images/svgs/logo.svg){kind=logo}
