Console Output
Skipping 189 KB..
Full Logi.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-10-01 00:42:55,061 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2
2025-10-01 00:42:55,061 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-10-01 00:42:55,519 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None
2025-10-01 00:42:55,980 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None
2025-10-01 00:42:56,508 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-10-01 00:42:56,986 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-10-01 00:42:57,505 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-10-01 00:42:57,958 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2025-10-01 00:42:57,958 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-10-01 00:42:57,959 [ scc.repo] DEBUG ## Branches found:
2025-10-01 00:42:57,959 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-10-01 00:42:57,959 [ scc.git] DEBUG Get sha1 of %s
2025-10-01 00:42:57,959 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:42:57,961 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-10-01 00:42:57,963 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-10-01 00:42:57,963 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-10-01 00:42:57,966 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-10-01 00:42:57,973 [ scc.git] DEBUG Updating 3cd120c..55060a2
2025-10-01 00:42:58,659 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2025-10-01 00:42:58,660 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2025-10-01 00:42:59,664 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-10-01 00:42:59,664 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2025-10-01 00:42:59,668 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2025-10-01 00:43:00,426 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-10-01 00:43:00,426 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2025-10-01 00:43:00,429 [ scc.git] DEBUG ## Unique users: []
2025-10-01 00:43:00,429 [ scc.git] DEBUG Get sha1 of %s
2025-10-01 00:43:00,430 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:43:00,432 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-10-01 00:43:00,436 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:43:00,438 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-10-01 00:43:00,627 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2025-10-01 00:43:00,627 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2025-10-01 00:43:00,627 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-10-01 00:43:00,627 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-10-01 00:43:00,627 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-10-01 00:43:00,627 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-10-01 00:43:00,630 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-10-01 00:43:00,633 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-10-01 00:43:00,779 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-01 00:43:00,779 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-10-01 00:43:00,783 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501'
2025-10-01 00:43:00,786 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#547](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/547/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/547/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/populate.py
- src/omero_metadata/cli.py
--conflicts
2025-10-01 00:43:00,788 [ scc.config] DEBUG Found github.token
2025-10-01 00:43:00,788 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2025-10-01 00:43:00,788 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2025-10-01 00:43:00,792 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:43:00,794 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2025-10-01 00:43:00,977 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-10-01 00:43:00,977 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-10-01 00:43:00,977 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2025-10-01 00:43:00,977 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-10-01 00:43:00,977 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-10-01 00:43:00,980 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-10-01 00:43:00,984 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-10-01 00:43:01,221 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-01 00:43:01,222 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7'
2025-10-01 00:43:01,225 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501'
2025-10-01 00:43:01,228 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#547](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/547/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/547/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2025-10-01 00:43:01,230 [ scc.config] DEBUG Found github.token
2025-10-01 00:43:01,230 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2025-10-01 00:43:01,231 [ scc.git] DEBUG Calling 'git submodule update'
2025-10-01 00:43:01,267 [ scc.git] DEBUG Get sha1 of %s
2025-10-01 00:43:01,267 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:43:01,269 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-10-01 00:43:01,303 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-10-01 00:43:01,307 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f0c3116d4d0> has no local changes
2025-10-01 00:43:01,307 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#547 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/547/)'
2025-10-01 00:43:01,312 [ scc.git] DEBUG [detached HEAD 604f828] merge master -Dorg -Ssuccess-only
2025-10-01 00:43:01,312 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-01 00:43:01,312 [ scc.repo] DEBUG ## PRs found:
2025-10-01 00:43:01,791 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2025-10-01 00:43:02,339 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2025-10-01 00:43:02,838 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-10-01 00:43:03,346 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-10-01 00:43:03,821 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-10-01 00:43:04,355 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-10-01 00:43:04,775 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2025-10-01 00:43:04,775 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-10-01 00:43:05,279 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2025-10-01 00:43:05,279 [ scc.repo] DEBUG # ... Include label: dependencies
2025-10-01 00:43:05,840 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-10-01 00:43:06,468 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-10-01 00:43:07,034 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-10-01 00:43:07,506 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-10-01 00:43:07,940 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2025-10-01 00:43:07,940 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-10-01 00:43:08,444 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2025-10-01 00:43:08,445 [ scc.repo] DEBUG # ... Include label: dependencies
2025-10-01 00:43:09,010 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-10-01 00:43:09,501 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-10-01 00:43:09,984 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-10-01 00:43:10,532 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-10-01 00:43:10,939 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2025-10-01 00:43:10,939 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-10-01 00:43:11,394 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2025-10-01 00:43:11,893 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2025-10-01 00:43:12,332 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2025-10-01 00:43:12,838 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2025-10-01 00:43:13,328 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2025-10-01 00:43:13,837 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2025-10-01 00:43:14,310 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2025-10-01 00:43:14,311 [ scc.repo] DEBUG ## Branches found:
2025-10-01 00:43:14,311 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-10-01 00:43:14,311 [ scc.git] DEBUG Get sha1 of %s
2025-10-01 00:43:14,311 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:43:14,314 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-10-01 00:43:14,316 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-10-01 00:43:14,316 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-10-01 00:43:14,319 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-10-01 00:43:14,321 [ scc.git] DEBUG Already up to date.
2025-10-01 00:43:14,321 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2025-10-01 00:43:14,603 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-10-01 00:43:14,603 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2025-10-01 00:43:14,607 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2025-10-01 00:43:14,887 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-10-01 00:43:14,887 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2025-10-01 00:43:14,891 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2025-10-01 00:43:15,226 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-10-01 00:43:15,226 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2025-10-01 00:43:15,230 [ scc.git] DEBUG ## Unique users: []
2025-10-01 00:43:15,230 [ scc.git] DEBUG Get sha1 of %s
2025-10-01 00:43:15,230 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:43:15,232 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2025-10-01 00:43:15,294 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:43:15,296 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2025-10-01 00:43:15,399 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-10-01 00:43:15,402 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2025-10-01 00:43:15,402 [ scc.git] DEBUG package.json | 2 +-
2025-10-01 00:43:15,402 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2025-10-01 00:43:15,554 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-01 00:43:15,554 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2025-10-01 00:43:15,570 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:43:15,572 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2025-10-01 00:43:15,715 [ scc.git] DEBUG Auto-merging package-lock.json
2025-10-01 00:43:15,715 [ scc.git] DEBUG Auto-merging package.json
2025-10-01 00:43:15,716 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-10-01 00:43:15,719 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2025-10-01 00:43:15,719 [ scc.git] DEBUG package.json | 2 +-
2025-10-01 00:43:15,719 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2025-10-01 00:43:15,951 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-01 00:43:15,952 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-10-01 00:43:15,954 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:43:15,956 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-10-01 00:43:15,963 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-10-01 00:43:15,966 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-10-01 00:43:15,966 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-10-01 00:43:16,346 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-01 00:43:16,346 [ scc.git] DEBUG Calling 'git submodule update'
2025-10-01 00:43:16,383 [ scc.git] DEBUG Get sha1 of %s
2025-10-01 00:43:16,383 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:43:16,385 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-10-01 00:43:16,420 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-10-01 00:43:16,424 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f0c300ad6d0> has no local changes
2025-10-01 00:43:16,424 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#547 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/547/)'
2025-10-01 00:43:16,429 [ scc.git] DEBUG [detached HEAD 8556345] merge master -Dorg -Ssuccess-only
2025-10-01 00:43:16,429 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-01 00:43:16,429 [ scc.repo] DEBUG ## PRs found:
2025-10-01 00:43:16,816 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None
2025-10-01 00:43:17,305 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/16 HTTP/1.1" 200 None
2025-10-01 00:43:17,306 [ scc.repo] DEBUG # ... Include label: dependencies
2025-10-01 00:43:17,901 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None
2025-10-01 00:43:18,384 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-10-01 00:43:18,891 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-10-01 00:43:19,477 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None
2025-10-01 00:43:19,898 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/5381b9f25e1666d81d236039a1317276291e9b2e?per_page=1 HTTP/1.1" 200 2
2025-10-01 00:43:19,899 [ scc.repo] DEBUG - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-10-01 00:43:19,899 [ scc.repo] DEBUG ## Branches found:
2025-10-01 00:43:19,899 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-10-01 00:43:19,899 [ scc.git] DEBUG Get sha1 of %s
2025-10-01 00:43:19,899 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:43:19,901 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-10-01 00:43:19,904 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-10-01 00:43:19,904 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-10-01 00:43:19,906 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-10-01 00:43:19,909 [ scc.git] DEBUG Already up to date.
2025-10-01 00:43:19,909 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head'
2025-10-01 00:43:20,195 [ scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools
2025-10-01 00:43:20,195 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD
2025-10-01 00:43:20,199 [ scc.git] DEBUG ## Unique users: []
2025-10-01 00:43:20,199 [ scc.git] DEBUG Get sha1 of %s
2025-10-01 00:43:20,199 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:43:20,201 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5381b9f25e1666d81d236039a1317276291e9b2e'
2025-10-01 00:43:20,203 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:43:20,205 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 5381b9f25e1666d81d236039a1317276291e9b2e'
2025-10-01 00:43:20,211 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-10-01 00:43:20,214 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-10-01 00:43:20,214 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-10-01 00:43:20,373 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-01 00:43:20,374 [ scc.git] DEBUG Calling 'git submodule update'
2025-10-01 00:43:20,409 [ scc.git] DEBUG Get sha1 of %s
2025-10-01 00:43:20,410 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:43:20,411 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-10-01 00:43:20,446 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-10-01 00:43:20,449 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f0c300e1d50> has no local changes
2025-10-01 00:43:20,449 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#547 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/547/)'
2025-10-01 00:43:20,454 [ scc.git] DEBUG [detached HEAD f3ee34b] merge master -Dorg -Ssuccess-only
2025-10-01 00:43:20,455 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-01 00:43:20,455 [ scc.repo] DEBUG ## PRs found:
2025-10-01 00:43:20,987 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2025-10-01 00:43:21,457 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/34 HTTP/1.1" 200 None
2025-10-01 00:43:21,458 [ scc.repo] DEBUG # ... Include label: dependencies
2025-10-01 00:43:22,020 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2025-10-01 00:43:22,546 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-10-01 00:43:23,040 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-10-01 00:43:23,610 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2025-10-01 00:43:24,061 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/149bb248277256d589ea0db597c04739e8134301?per_page=1 HTTP/1.1" 200 None
2025-10-01 00:43:24,625 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2025-10-01 00:43:25,086 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/status HTTP/1.1" 200 None
2025-10-01 00:43:25,086 [ scc.repo] DEBUG - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-10-01 00:43:25,606 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33 HTTP/1.1" 200 None
2025-10-01 00:43:26,078 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33/comments HTTP/1.1" 200 None
2025-10-01 00:43:26,567 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-10-01 00:43:27,062 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-10-01 00:43:27,542 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-10-01 00:43:27,989 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-10-01 00:43:28,420 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/1122baea98746effd4eb59deed25870f673ce3d3?per_page=1 HTTP/1.1" 200 None
2025-10-01 00:43:28,851 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-10-01 00:43:29,282 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/status HTTP/1.1" 200 None
2025-10-01 00:43:29,282 [ scc.repo] DEBUG - PR 33 jo-mueller 'Add roi to array functions'
2025-10-01 00:43:29,757 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2025-10-01 00:43:29,757 [ scc.repo] DEBUG ## Branches found:
2025-10-01 00:43:29,758 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-10-01 00:43:29,758 [ scc.git] DEBUG Get sha1 of %s
2025-10-01 00:43:29,758 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:43:29,760 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-10-01 00:43:29,762 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-10-01 00:43:29,762 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-10-01 00:43:29,765 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-10-01 00:43:29,767 [ scc.git] DEBUG Already up to date.
2025-10-01 00:43:29,767 [ scc.git] DEBUG Calling 'git fetch origin pull/33/head'
2025-10-01 00:43:30,768 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2025-10-01 00:43:30,768 [ scc.git] DEBUG * branch refs/pull/33/head -> FETCH_HEAD
2025-10-01 00:43:30,772 [ scc.git] DEBUG Calling 'git fetch origin pull/34/head'
2025-10-01 00:43:31,082 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2025-10-01 00:43:31,082 [ scc.git] DEBUG * branch refs/pull/34/head -> FETCH_HEAD
2025-10-01 00:43:31,086 [ scc.git] DEBUG ## Unique users: []
2025-10-01 00:43:31,086 [ scc.git] DEBUG Get sha1 of %s
2025-10-01 00:43:31,086 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:43:31,088 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1122baea98746effd4eb59deed25870f673ce3d3'
2025-10-01 00:43:31,090 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:43:31,092 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 33 (Add roi to array functions) 1122baea98746effd4eb59deed25870f673ce3d3'
2025-10-01 00:43:31,099 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-10-01 00:43:31,102 [ scc.git] DEBUG setup.py | 4 +-
2025-10-01 00:43:31,102 [ scc.git] DEBUG src/omero_rois/__init__.py | 4 +
2025-10-01 00:43:31,102 [ scc.git] DEBUG src/omero_rois/library.py | 204 +++++++++++++++++++++++++++++++++++++++++++--
2025-10-01 00:43:31,102 [ scc.git] DEBUG 3 files changed, 203 insertions(+), 9 deletions(-)
2025-10-01 00:43:31,262 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-01 00:43:31,262 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...149bb248277256d589ea0db597c04739e8134301'
2025-10-01 00:43:31,317 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:43:31,319 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 34 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 149bb248277256d589ea0db597c04739e8134301'
2025-10-01 00:43:31,326 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-10-01 00:43:31,328 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-10-01 00:43:31,329 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-10-01 00:43:31,676 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-01 00:43:31,677 [ scc.git] DEBUG Calling 'git submodule update'
2025-10-01 00:43:31,712 [ scc.git] DEBUG Get sha1 of %s
2025-10-01 00:43:31,712 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:43:31,714 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-10-01 00:43:31,749 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-10-01 00:43:31,752 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f0c300bf6d0> has no local changes
2025-10-01 00:43:31,752 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
- PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#547 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/547/)'
2025-10-01 00:43:31,758 [ scc.git] DEBUG [detached HEAD f61e74d] merge master -Dorg -Ssuccess-only
2025-10-01 00:43:31,758 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-01 00:43:31,758 [ scc.repo] DEBUG ## PRs found:
2025-10-01 00:43:32,214 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2025-10-01 00:43:32,724 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/22 HTTP/1.1" 200 None
2025-10-01 00:43:32,725 [ scc.repo] DEBUG # ... Include label: dependencies
2025-10-01 00:43:33,314 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None
2025-10-01 00:43:33,846 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-10-01 00:43:34,332 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-10-01 00:43:34,782 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None
2025-10-01 00:43:35,190 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/8b27e47a330555e99e9594f0c4b546946f4f98aa?per_page=1 HTTP/1.1" 200 2
2025-10-01 00:43:35,190 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-10-01 00:43:35,663 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2025-10-01 00:43:36,105 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2025-10-01 00:43:36,872 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-10-01 00:43:37,307 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-10-01 00:43:37,743 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-10-01 00:43:38,182 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2025-10-01 00:43:38,182 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2025-10-01 00:43:38,182 [ scc.repo] DEBUG ## Branches found:
2025-10-01 00:43:38,182 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-10-01 00:43:38,182 [ scc.git] DEBUG Get sha1 of %s
2025-10-01 00:43:38,182 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:43:38,184 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-10-01 00:43:38,187 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-10-01 00:43:38,187 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-10-01 00:43:38,189 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-10-01 00:43:38,192 [ scc.git] DEBUG Already up to date.
2025-10-01 00:43:38,192 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2025-10-01 00:43:38,631 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2025-10-01 00:43:38,631 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2025-10-01 00:43:38,635 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2025-10-01 00:43:38,908 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2025-10-01 00:43:38,908 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2025-10-01 00:43:38,912 [ scc.git] DEBUG ## Unique users: []
2025-10-01 00:43:38,912 [ scc.git] DEBUG Get sha1 of %s
2025-10-01 00:43:38,912 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:43:38,914 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-10-01 00:43:38,917 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:43:38,919 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-10-01 00:43:39,072 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2025-10-01 00:43:39,072 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2025-10-01 00:43:39,072 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2025-10-01 00:43:39,072 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2025-10-01 00:43:39,072 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2025-10-01 00:43:39,072 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2025-10-01 00:43:39,072 [ scc.git] DEBUG Auto-merging setup.py
2025-10-01 00:43:39,072 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2025-10-01 00:43:39,072 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-10-01 00:43:39,072 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-10-01 00:43:39,074 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2025-10-01 00:43:39,078 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2025-10-01 00:43:39,228 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-01 00:43:39,228 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-10-01 00:43:39,231 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2025-10-01 00:43:39,233 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#547](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/547/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/547/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_signup/urls.py
- omero_signup/views.py
- setup.py
- omero_signup/signup_settings.py
--conflicts
2025-10-01 00:43:39,235 [ scc.config] DEBUG Found github.token
2025-10-01 00:43:39,235 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2025-10-01 00:43:39,235 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8b27e47a330555e99e9594f0c4b546946f4f98aa'
2025-10-01 00:43:39,238 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:43:39,240 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8b27e47a330555e99e9594f0c4b546946f4f98aa'
2025-10-01 00:43:39,246 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-10-01 00:43:39,248 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-10-01 00:43:39,248 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-10-01 00:43:39,630 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-01 00:43:39,631 [ scc.git] DEBUG Calling 'git submodule update'
2025-10-01 00:43:39,667 [ scc.git] DEBUG Get sha1 of %s
2025-10-01 00:43:39,667 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:43:39,669 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-10-01 00:43:39,705 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-10-01 00:43:39,708 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f0c312a3b90> has no local changes
2025-10-01 00:43:39,708 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#547 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/547/)'
2025-10-01 00:43:39,714 [ scc.git] DEBUG [detached HEAD e07306a] merge master -Dorg -Ssuccess-only
2025-10-01 00:43:39,714 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-01 00:43:39,714 [ scc.repo] DEBUG ## PRs found:
2025-10-01 00:43:40,247 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2025-10-01 00:43:40,850 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/76 HTTP/1.1" 200 None
2025-10-01 00:43:41,433 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-10-01 00:43:41,902 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-10-01 00:43:42,373 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-10-01 00:43:42,913 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-10-01 00:43:43,328 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6?per_page=1 HTTP/1.1" 200 2
2025-10-01 00:43:43,328 [ scc.repo] DEBUG - PR 76 will-moore 'Run cli deps'
2025-10-01 00:43:43,860 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2025-10-01 00:43:44,339 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2025-10-01 00:43:44,837 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None
2025-10-01 00:43:45,342 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-10-01 00:43:45,790 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-10-01 00:43:46,271 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73 HTTP/1.1" 200 None
2025-10-01 00:43:46,735 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73/comments HTTP/1.1" 200 None
2025-10-01 00:43:47,214 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12 HTTP/1.1" 200 None
2025-10-01 00:43:47,664 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12/comments HTTP/1.1" 200 None
2025-10-01 00:43:48,178 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-10-01 00:43:48,623 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-10-01 00:43:49,053 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-10-01 00:43:49,473 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/425319051224e8481afc40083fd9b5db4bc99928?per_page=1 HTTP/1.1" 200 2
2025-10-01 00:43:49,473 [ scc.repo] DEBUG - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-10-01 00:43:49,473 [ scc.repo] DEBUG ## Branches found:
2025-10-01 00:43:49,473 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-10-01 00:43:49,473 [ scc.git] DEBUG Get sha1 of %s
2025-10-01 00:43:49,473 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:43:49,476 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-10-01 00:43:49,478 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-10-01 00:43:49,478 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-10-01 00:43:49,480 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-10-01 00:43:49,483 [ scc.git] DEBUG Already up to date.
2025-10-01 00:43:49,483 [ scc.git] DEBUG Calling 'git fetch origin pull/12/head'
2025-10-01 00:43:49,789 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-10-01 00:43:49,789 [ scc.git] DEBUG * branch refs/pull/12/head -> FETCH_HEAD
2025-10-01 00:43:49,793 [ scc.git] DEBUG Calling 'git fetch origin pull/76/head'
2025-10-01 00:43:50,147 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-10-01 00:43:50,147 [ scc.git] DEBUG * branch refs/pull/76/head -> FETCH_HEAD
2025-10-01 00:43:50,151 [ scc.git] DEBUG ## Unique users: []
2025-10-01 00:43:50,151 [ scc.git] DEBUG Get sha1 of %s
2025-10-01 00:43:50,151 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:43:50,153 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...425319051224e8481afc40083fd9b5db4bc99928'
2025-10-01 00:43:50,156 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:43:50,158 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 12 (IDR: use downloaded ansible templates & variables to configure infra) 425319051224e8481afc40083fd9b5db4bc99928'
2025-10-01 00:43:50,230 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-10-01 00:43:50,233 [ scc.git] DEBUG idr-compose.yml | 66 ++++++++++++++
2025-10-01 00:43:50,233 [ scc.git] DEBUG idr-haproxy.yml | 58 +++++++++++++
2025-10-01 00:43:50,233 [ scc.git] DEBUG idr/40-ansible.sh | 7 ++
2025-10-01 00:43:50,233 [ scc.git] DEBUG idr/70-reset-password.sh | 1 +
2025-10-01 00:43:50,233 [ scc.git] DEBUG idr/nginx/conf.d/default.conf | 1 +
2025-10-01 00:43:50,233 [ scc.git] DEBUG idr/nginx/conf.d/example_ssl.conf | 1 +
2025-10-01 00:43:50,233 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cache.conf | 53 +++++++++++
2025-10-01 00:43:50,234 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cachebuster.conf | 114 ++++++++++++++++++++++++
2025-10-01 00:43:50,234 [ scc.git] DEBUG idr/nginx/conf.d/proxy-default.conf | 135 +++++++++++++++++++++++++++++
2025-10-01 00:43:50,234 [ scc.git] DEBUG idr/nginx/conf.d/proxy-omeroreadwrite.conf | 115 ++++++++++++++++++++++++
2025-10-01 00:43:50,234 [ scc.git] DEBUG idr/nginx/conf.d/proxy-redirect.conf | 15 ++++
2025-10-01 00:43:50,234 [ scc.git] DEBUG idr/nginx/conf.d/proxy-upstream.conf | 13 +++
2025-10-01 00:43:50,234 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v0.conf | 26 ++++++
2025-10-01 00:43:50,234 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v1.conf | 30 +++++++
2025-10-01 00:43:50,234 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v2.conf | 30 +++++++
2025-10-01 00:43:50,234 [ scc.git] DEBUG idr/nginx/conf.d/proxy-websockets.conf | 6 ++
2025-10-01 00:43:50,234 [ scc.git] DEBUG idr/nginx/nginx.conf | 53 +++++++++++
2025-10-01 00:43:50,234 [ scc.git] DEBUG idr/omero/Dockerfile | 3 +
2025-10-01 00:43:50,234 [ scc.git] DEBUG idr/omero/playbook.yml | 41 +++++++++
2025-10-01 00:43:50,234 [ scc.git] DEBUG idr/redirect/Dockerfile | 6 ++
2025-10-01 00:43:50,234 [ scc.git] DEBUG idr/web/Dockerfile | 5 ++
2025-10-01 00:43:50,234 [ scc.git] DEBUG idr/web/playbook.yml | 45 ++++++++++
2025-10-01 00:43:50,234 [ scc.git] DEBUG 22 files changed, 824 insertions(+)
2025-10-01 00:43:50,234 [ scc.git] DEBUG create mode 100644 idr-compose.yml
2025-10-01 00:43:50,234 [ scc.git] DEBUG create mode 100644 idr-haproxy.yml
2025-10-01 00:43:50,234 [ scc.git] DEBUG create mode 100755 idr/40-ansible.sh
2025-10-01 00:43:50,234 [ scc.git] DEBUG create mode 100755 idr/70-reset-password.sh
2025-10-01 00:43:50,234 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/default.conf
2025-10-01 00:43:50,234 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/example_ssl.conf
2025-10-01 00:43:50,234 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cache.conf
2025-10-01 00:43:50,234 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cachebuster.conf
2025-10-01 00:43:50,234 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-default.conf
2025-10-01 00:43:50,234 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-omeroreadwrite.conf
2025-10-01 00:43:50,234 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-redirect.conf
2025-10-01 00:43:50,234 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-upstream.conf
2025-10-01 00:43:50,234 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v0.conf
2025-10-01 00:43:50,235 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v1.conf
2025-10-01 00:43:50,235 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v2.conf
2025-10-01 00:43:50,235 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-websockets.conf
2025-10-01 00:43:50,235 [ scc.git] DEBUG create mode 100644 idr/nginx/nginx.conf
2025-10-01 00:43:50,235 [ scc.git] DEBUG create mode 100644 idr/omero/Dockerfile
2025-10-01 00:43:50,235 [ scc.git] DEBUG create mode 100644 idr/omero/playbook.yml
2025-10-01 00:43:50,235 [ scc.git] DEBUG create mode 100644 idr/redirect/Dockerfile
2025-10-01 00:43:50,235 [ scc.git] DEBUG create mode 100644 idr/web/Dockerfile
2025-10-01 00:43:50,235 [ scc.git] DEBUG create mode 100644 idr/web/playbook.yml
2025-10-01 00:43:50,412 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-01 00:43:50,413 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-10-01 00:43:50,417 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:43:50,419 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 76 (Run cli deps) bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-10-01 00:43:50,428 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-10-01 00:43:50,430 [ scc.git] DEBUG docker | 1 +
2025-10-01 00:43:50,430 [ scc.git] DEBUG 1 file changed, 1 insertion(+)
2025-10-01 00:43:50,808 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-01 00:43:50,809 [ scc.git] DEBUG Calling 'git submodule update'
2025-10-01 00:43:50,846 [ scc.git] DEBUG Get sha1 of %s
2025-10-01 00:43:50,846 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:43:50,848 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-10-01 00:43:50,882 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-10-01 00:43:50,885 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f0c300b86d0> has no local changes
2025-10-01 00:43:50,885 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
- PR 76 will-moore 'Run cli deps'
Generated by OMERO-plugins-push#547 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/547/)'
2025-10-01 00:43:50,891 [ scc.git] DEBUG [detached HEAD 6f89e3d] merge master -Dorg -Ssuccess-only
2025-10-01 00:43:50,891 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-01 00:43:50,891 [ scc.repo] DEBUG ## PRs found:
2025-10-01 00:43:51,297 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 None
2025-10-01 00:43:51,785 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/issues/14 HTTP/1.1" 200 None
2025-10-01 00:43:51,786 [ scc.repo] DEBUG # ... Include label: dependencies
2025-10-01 00:43:52,320 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None
2025-10-01 00:43:52,879 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-10-01 00:43:53,366 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-10-01 00:43:53,812 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None
2025-10-01 00:43:54,241 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/statuses/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?per_page=1 HTTP/1.1" 200 2
2025-10-01 00:43:54,241 [ scc.repo] DEBUG - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-10-01 00:43:54,242 [ scc.repo] DEBUG ## Branches found:
2025-10-01 00:43:54,242 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-10-01 00:43:54,242 [ scc.git] DEBUG Get sha1 of %s
2025-10-01 00:43:54,242 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:43:54,244 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-10-01 00:43:54,246 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-10-01 00:43:54,246 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-10-01 00:43:54,249 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-10-01 00:43:54,251 [ scc.git] DEBUG Already up to date.
2025-10-01 00:43:54,251 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2025-10-01 00:43:54,549 [ scc.git] DEBUG From https://github.com/ome/omero-upload
2025-10-01 00:43:54,549 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2025-10-01 00:43:54,553 [ scc.git] DEBUG ## Unique users: []
2025-10-01 00:43:54,553 [ scc.git] DEBUG Get sha1 of %s
2025-10-01 00:43:54,553 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:43:54,556 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2025-10-01 00:43:54,558 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:43:54,560 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2025-10-01 00:43:54,609 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-10-01 00:43:54,612 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-10-01 00:43:54,612 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-10-01 00:43:54,758 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-01 00:43:54,759 [ scc.git] DEBUG Calling 'git submodule update'
2025-10-01 00:43:54,795 [ scc.git] DEBUG Get sha1 of %s
2025-10-01 00:43:54,795 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:43:54,797 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-10-01 00:43:54,831 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-10-01 00:43:54,834 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f0c300f0dd0> has no local changes
2025-10-01 00:43:54,834 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#547 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/547/)'
2025-10-01 00:43:54,839 [ scc.git] DEBUG [detached HEAD 392a8b2] merge master -Dorg -Ssuccess-only
2025-10-01 00:43:54,839 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-01 00:43:54,839 [ scc.repo] DEBUG ## PRs found:
2025-10-01 00:43:55,292 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 None
2025-10-01 00:43:55,947 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/issues/22 HTTP/1.1" 200 None
2025-10-01 00:43:55,948 [ scc.repo] DEBUG # ... Include label: dependencies
2025-10-01 00:43:56,538 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None
2025-10-01 00:43:57,073 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-10-01 00:43:57,545 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-10-01 00:43:58,098 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None
2025-10-01 00:43:58,524 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/statuses/2ee819462af52bf2878fadf06d6ebdbafb8f1902?per_page=1 HTTP/1.1" 200 2
2025-10-01 00:43:58,524 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-10-01 00:43:58,524 [ scc.repo] DEBUG ## Branches found:
2025-10-01 00:43:58,524 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-10-01 00:43:58,524 [ scc.git] DEBUG Get sha1 of %s
2025-10-01 00:43:58,524 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:43:58,527 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-10-01 00:43:58,529 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-10-01 00:43:58,529 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-10-01 00:43:58,531 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-10-01 00:43:58,538 [ scc.git] DEBUG Updating deab817..160d894
2025-10-01 00:43:59,271 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2025-10-01 00:43:59,271 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2025-10-01 00:43:59,564 [ scc.git] DEBUG From https://github.com/ome/omero-virtual-microscope
2025-10-01 00:43:59,564 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2025-10-01 00:43:59,567 [ scc.git] DEBUG ## Unique users: []
2025-10-01 00:43:59,568 [ scc.git] DEBUG Get sha1 of %s
2025-10-01 00:43:59,568 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:43:59,570 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2025-10-01 00:43:59,572 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:43:59,574 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2025-10-01 00:43:59,581 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-10-01 00:43:59,583 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-10-01 00:43:59,583 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-10-01 00:43:59,719 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-01 00:43:59,720 [ scc.git] DEBUG Calling 'git submodule update'
2025-10-01 00:43:59,756 [ scc.git] DEBUG Get sha1 of %s
2025-10-01 00:43:59,756 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:43:59,758 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-10-01 00:43:59,792 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-10-01 00:43:59,795 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f0c300ee990> has no local changes
2025-10-01 00:43:59,795 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#547 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/547/)'
2025-10-01 00:43:59,800 [ scc.git] DEBUG [detached HEAD aa4a760] merge master -Dorg -Ssuccess-only
2025-10-01 00:43:59,801 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-01 00:43:59,801 [ scc.git] INFO Overriding base-branch from master to main
2025-10-01 00:43:59,801 [ scc.repo] DEBUG ## PRs found:
2025-10-01 00:44:00,226 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2025-10-01 00:44:00,708 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None
2025-10-01 00:44:01,185 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21/comments HTTP/1.1" 200 None
2025-10-01 00:44:01,709 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None
2025-10-01 00:44:02,182 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-10-01 00:44:02,671 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-10-01 00:44:03,129 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None
2025-10-01 00:44:03,562 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/d07067753650282c9e8cdbbeae37897b7ed0d4cc?per_page=1 HTTP/1.1" 200 2
2025-10-01 00:44:03,562 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import'
2025-10-01 00:44:04,042 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2025-10-01 00:44:04,565 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2025-10-01 00:44:05,034 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2025-10-01 00:44:05,574 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-10-01 00:44:06,191 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-10-01 00:44:06,714 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-10-01 00:44:07,130 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2025-10-01 00:44:07,131 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-10-01 00:44:07,131 [ scc.repo] DEBUG ## Branches found:
2025-10-01 00:44:07,131 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-10-01 00:44:07,131 [ scc.git] DEBUG Get sha1 of %s
2025-10-01 00:44:07,131 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:44:07,133 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2025-10-01 00:44:07,135 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-10-01 00:44:07,136 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2025-10-01 00:44:07,138 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2025-10-01 00:44:07,145 [ scc.git] DEBUG Updating 8f3c313..00e0207
2025-10-01 00:44:07,804 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/20 HTTP/1.1" 200 None
2025-10-01 00:44:07,805 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2025-10-01 00:44:08,218 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-10-01 00:44:08,218 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2025-10-01 00:44:08,222 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head'
2025-10-01 00:44:09,652 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-10-01 00:44:09,652 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD
2025-10-01 00:44:09,656 [ scc.git] DEBUG ## Unique users: []
2025-10-01 00:44:09,656 [ scc.git] DEBUG Get sha1 of %s
2025-10-01 00:44:09,656 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:44:09,658 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-10-01 00:44:09,661 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:44:09,663 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-10-01 00:44:09,865 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2025-10-01 00:44:09,865 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2025-10-01 00:44:09,865 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2025-10-01 00:44:09,865 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-10-01 00:44:09,865 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-10-01 00:44:09,868 [ scc.git] DEBUG Calling 'git reset --hard 00e02072dc29b04eba14c080ca8a0175a1499c15'
2025-10-01 00:44:09,872 [ scc.git] DEBUG HEAD is now at 00e0207 Merge pull request #20 from will-moore/zarr_python_v3
2025-10-01 00:44:10,016 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-01 00:44:10,016 [ scc.git] DEBUG Calling 'git merge-base 00e02072dc29b04eba14c080ca8a0175a1499c15 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-10-01 00:44:10,018 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..00e02072dc29b04eba14c080ca8a0175a1499c15'
2025-10-01 00:44:10,021 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#547](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/547/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/547/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2025-10-01 00:44:10,023 [ scc.config] DEBUG Found github.token
2025-10-01 00:44:10,023 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2025-10-01 00:44:10,023 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2025-10-01 00:44:10,025 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:44:10,027 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2025-10-01 00:44:10,045 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2025-10-01 00:44:10,046 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-10-01 00:44:10,049 [ scc.git] DEBUG README.rst | 3 +
2025-10-01 00:44:10,049 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++
2025-10-01 00:44:10,049 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 +
2025-10-01 00:44:10,049 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++-
2025-10-01 00:44:10,049 [ scc.git] DEBUG setup.py | 5 +-
2025-10-01 00:44:10,049 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-)
2025-10-01 00:44:10,049 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html
2025-10-01 00:44:10,402 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-01 00:44:10,403 [ scc.git] DEBUG Calling 'git submodule update'
2025-10-01 00:44:10,439 [ scc.git] DEBUG Get sha1 of %s
2025-10-01 00:44:10,439 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:44:10,441 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-10-01 00:44:10,476 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-10-01 00:44:10,479 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f0c300e9190> has no local changes
2025-10-01 00:44:10,479 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..00e0207
Previously merged:
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#547 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/547/)'
2025-10-01 00:44:10,485 [ scc.git] DEBUG [detached HEAD 48f1ef6] merge master -Dorg -Ssuccess-only
2025-10-01 00:44:10,486 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-01 00:44:10,486 [ scc.repo] DEBUG ## PRs found:
2025-10-01 00:44:10,895 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 None
2025-10-01 00:44:11,408 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/issues/25 HTTP/1.1" 200 None
2025-10-01 00:44:11,408 [ scc.repo] DEBUG # ... Include label: dependencies
2025-10-01 00:44:12,003 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None
2025-10-01 00:44:12,516 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-10-01 00:44:13,065 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-10-01 00:44:13,614 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None
2025-10-01 00:44:14,012 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/statuses/c73bedb717b9ecce0af666245d3486aa5a2dafe9?per_page=1 HTTP/1.1" 200 2
2025-10-01 00:44:14,013 [ scc.repo] DEBUG - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-10-01 00:44:14,013 [ scc.repo] DEBUG ## Branches found:
2025-10-01 00:44:14,013 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-10-01 00:44:14,013 [ scc.git] DEBUG Get sha1 of %s
2025-10-01 00:44:14,013 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:44:14,015 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-10-01 00:44:14,017 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-10-01 00:44:14,017 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-10-01 00:44:14,020 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-10-01 00:44:14,022 [ scc.git] DEBUG Already up to date.
2025-10-01 00:44:14,022 [ scc.git] DEBUG Calling 'git fetch origin pull/25/head'
2025-10-01 00:44:14,321 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-weberror
2025-10-01 00:44:14,321 [ scc.git] DEBUG * branch refs/pull/25/head -> FETCH_HEAD
2025-10-01 00:44:14,324 [ scc.git] DEBUG ## Unique users: []
2025-10-01 00:44:14,324 [ scc.git] DEBUG Get sha1 of %s
2025-10-01 00:44:14,325 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:44:14,326 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2025-10-01 00:44:14,329 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:44:14,331 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2025-10-01 00:44:14,337 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-10-01 00:44:14,340 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-10-01 00:44:14,340 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-10-01 00:44:14,490 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-01 00:44:14,490 [ scc.git] DEBUG Calling 'git submodule update'
2025-10-01 00:44:14,526 [ scc.git] DEBUG Get sha1 of %s
2025-10-01 00:44:14,526 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:44:14,528 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-10-01 00:44:14,563 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-10-01 00:44:14,566 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f0c30148c90> has no local changes
2025-10-01 00:44:14,566 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#547 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/547/)'
2025-10-01 00:44:14,571 [ scc.git] DEBUG [detached HEAD 6153eb7] merge master -Dorg -Ssuccess-only
2025-10-01 00:44:14,571 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-01 00:44:14,572 [ scc.repo] DEBUG ## PRs found:
2025-10-01 00:44:14,981 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 None
2025-10-01 00:44:15,464 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/issues/37 HTTP/1.1" 200 None
2025-10-01 00:44:15,465 [ scc.repo] DEBUG # ... Include label: dependencies
2025-10-01 00:44:16,196 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None
2025-10-01 00:44:16,710 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-10-01 00:44:17,228 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-10-01 00:44:17,814 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None
2025-10-01 00:44:18,233 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/statuses/8cf5f7e65ae8e945b134e41e77bc13a785aff478?per_page=1 HTTP/1.1" 200 2
2025-10-01 00:44:18,233 [ scc.repo] DEBUG - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-10-01 00:44:18,233 [ scc.repo] DEBUG ## Branches found:
2025-10-01 00:44:18,233 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-10-01 00:44:18,234 [ scc.git] DEBUG Get sha1 of %s
2025-10-01 00:44:18,234 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:44:18,236 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-10-01 00:44:18,238 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-10-01 00:44:18,238 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-10-01 00:44:18,241 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-10-01 00:44:18,243 [ scc.git] DEBUG Already up to date.
2025-10-01 00:44:18,244 [ scc.git] DEBUG Calling 'git fetch origin pull/37/head'
2025-10-01 00:44:18,539 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-webtest
2025-10-01 00:44:18,539 [ scc.git] DEBUG * branch refs/pull/37/head -> FETCH_HEAD
2025-10-01 00:44:18,543 [ scc.git] DEBUG ## Unique users: []
2025-10-01 00:44:18,543 [ scc.git] DEBUG Get sha1 of %s
2025-10-01 00:44:18,543 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:44:18,545 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2025-10-01 00:44:18,548 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:44:18,550 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 37 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2025-10-01 00:44:18,557 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-10-01 00:44:18,559 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-10-01 00:44:18,559 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-10-01 00:44:18,695 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-01 00:44:18,695 [ scc.git] DEBUG Calling 'git submodule update'
2025-10-01 00:44:18,732 [ scc.git] DEBUG Get sha1 of %s
2025-10-01 00:44:18,732 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:44:18,734 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-10-01 00:44:18,769 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-10-01 00:44:18,772 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f0c312581d0> has no local changes
2025-10-01 00:44:18,772 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#547 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/547/)'
2025-10-01 00:44:18,777 [ scc.git] DEBUG [detached HEAD 85b6311] merge master -Dorg -Ssuccess-only
2025-10-01 00:44:18,778 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-01 00:44:18,778 [ scc.repo] DEBUG ## PRs found:
2025-10-01 00:44:19,201 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 None
2025-10-01 00:44:19,817 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100 HTTP/1.1" 200 None
2025-10-01 00:44:20,259 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100/comments HTTP/1.1" 200 None
2025-10-01 00:44:20,782 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-10-01 00:44:21,419 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-10-01 00:44:21,857 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-10-01 00:44:22,289 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/statuses/b4abacf0cb9b7aee150761d320bdbb80762cd6e7?per_page=1 HTTP/1.1" 200 2
2025-10-01 00:44:22,289 [ scc.repo] DEBUG - PR 100 dominikl 'Run tests properly'
2025-10-01 00:44:22,289 [ scc.repo] DEBUG ## Branches found:
2025-10-01 00:44:22,289 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-10-01 00:44:22,289 [ scc.git] DEBUG Get sha1 of %s
2025-10-01 00:44:22,289 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:44:22,291 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-10-01 00:44:22,293 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-10-01 00:44:22,294 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-10-01 00:44:22,296 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-10-01 00:44:22,298 [ scc.git] DEBUG Already up to date.
2025-10-01 00:44:22,299 [ scc.git] DEBUG Calling 'git fetch origin pull/100/head'
2025-10-01 00:44:22,750 [ scc.git] DEBUG From https://github.com/ome/rOMERO-gateway
2025-10-01 00:44:22,750 [ scc.git] DEBUG * branch refs/pull/100/head -> FETCH_HEAD
2025-10-01 00:44:22,754 [ scc.git] DEBUG ## Unique users: []
2025-10-01 00:44:22,754 [ scc.git] DEBUG Get sha1 of %s
2025-10-01 00:44:22,754 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:44:22,756 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-10-01 00:44:22,758 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:44:22,760 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 100 (Run tests properly) b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-10-01 00:44:22,933 [ scc.git] DEBUG Auto-merging Dockerfile
2025-10-01 00:44:22,933 [ scc.git] DEBUG CONFLICT (content): Merge conflict in Dockerfile
2025-10-01 00:44:22,934 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-10-01 00:44:22,934 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-10-01 00:44:22,936 [ scc.git] DEBUG Calling 'git reset --hard 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-10-01 00:44:22,941 [ scc.git] DEBUG HEAD is now at 7b5d64d Merge pull request #106 from dominikl/add_examples_2
2025-10-01 00:44:23,082 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-01 00:44:23,083 [ scc.git] DEBUG Calling 'git merge-base 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-10-01 00:44:23,085 [ scc.git] DEBUG Calling 'git diff --name-only 8b424d2d21f70d07729c4da38a9241b9a9f483be..7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-10-01 00:44:23,087 [ scc.git] INFO - PR 100 dominikl 'Run tests properly'
Conflicting PR. Removed from build [OMERO-plugins-push#547](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/547/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/547/consoleText) for more details.
Possible conflicts:
- Upstream changes
- Dockerfile
--conflicts
2025-10-01 00:44:23,089 [ scc.config] DEBUG Found github.token
2025-10-01 00:44:23,089 [ scc.git] DEBUG Not adding comment to issue #100, already --conflicts.
2025-10-01 00:44:23,089 [ scc.git] DEBUG Calling 'git submodule update'
2025-10-01 00:44:23,126 [ scc.git] DEBUG Get sha1 of %s
2025-10-01 00:44:23,126 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:44:23,128 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-10-01 00:44:23,163 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-10-01 00:44:23,166 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f0c30079090> has no local changes
2025-10-01 00:44:23,167 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Generated by OMERO-plugins-push#547 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/547/)'
2025-10-01 00:44:23,172 [ scc.git] DEBUG [detached HEAD 7ad183f] merge master -Dorg -Ssuccess-only
2025-10-01 00:44:23,172 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-01 00:44:23,172 [ scc.git] INFO Overriding base-branch from master to develop
2025-10-01 00:44:23,172 [ scc.repo] DEBUG ## PRs found:
2025-10-01 00:44:23,685 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2025-10-01 00:44:24,165 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223 HTTP/1.1" 200 None
2025-10-01 00:44:24,598 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223/comments HTTP/1.1" 200 None
2025-10-01 00:44:25,016 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-10-01 00:44:25,476 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-10-01 00:44:26,000 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-10-01 00:44:26,423 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-10-01 00:44:26,844 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/d8b2bbd6f5066de883a41ba5338662d60472b0d8?per_page=1 HTTP/1.1" 200 2
2025-10-01 00:44:26,844 [ scc.repo] DEBUG - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-10-01 00:44:27,407 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202 HTTP/1.1" 200 None
2025-10-01 00:44:27,906 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202/comments HTTP/1.1" 200 None
2025-10-01 00:44:28,416 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-10-01 00:44:28,869 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-10-01 00:44:29,315 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-10-01 00:44:29,723 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/1fd6030669613cdb8879cfe6395db8c820fdcf19?per_page=1 HTTP/1.1" 200 2
2025-10-01 00:44:29,723 [ scc.repo] DEBUG - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-10-01 00:44:30,251 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None
2025-10-01 00:44:30,739 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None
2025-10-01 00:44:31,210 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103 HTTP/1.1" 200 None
2025-10-01 00:44:31,698 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103/comments HTTP/1.1" 200 None
2025-10-01 00:44:31,700 [ scc.repo] DEBUG ## Branches found:
2025-10-01 00:44:31,700 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-10-01 00:44:31,700 [ scc.git] DEBUG Get sha1 of %s
2025-10-01 00:44:31,700 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:44:31,702 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2025-10-01 00:44:31,704 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-10-01 00:44:31,704 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2025-10-01 00:44:31,707 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2025-10-01 00:44:31,716 [ scc.git] DEBUG Updating 4b4c755..03b9116
2025-10-01 00:44:32,378 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/228 HTTP/1.1" 200 None
2025-10-01 00:44:33,048 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2025-10-01 00:44:33,669 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2025-10-01 00:44:33,670 [ scc.git] DEBUG Calling 'git fetch origin pull/202/head'
2025-10-01 00:44:34,259 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-10-01 00:44:34,259 [ scc.git] DEBUG * branch refs/pull/202/head -> FETCH_HEAD
2025-10-01 00:44:34,263 [ scc.git] DEBUG Calling 'git fetch origin pull/223/head'
2025-10-01 00:44:34,792 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-10-01 00:44:34,792 [ scc.git] DEBUG * branch refs/pull/223/head -> FETCH_HEAD
2025-10-01 00:44:34,796 [ scc.git] DEBUG ## Unique users: []
2025-10-01 00:44:34,796 [ scc.git] DEBUG Get sha1 of %s
2025-10-01 00:44:34,796 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:44:34,798 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-10-01 00:44:34,803 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:44:34,805 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 202 (Add Plate support to KeyVal_to_csv.py) 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-10-01 00:44:34,913 [ scc.git] DEBUG CONFLICT (modify/delete): omero/annotation_scripts/KeyVal_to_csv.py deleted in HEAD and modified in 1fd6030669613cdb8879cfe6395db8c820fdcf19. Version 1fd6030669613cdb8879cfe6395db8c820fdcf19 of omero/annotation_scripts/KeyVal_to_csv.py left in tree.
2025-10-01 00:44:34,913 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-10-01 00:44:34,914 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-10-01 00:44:34,916 [ scc.git] DEBUG Calling 'git reset --hard 03b9116196e1a799dd18a666559613d912be01a5'
2025-10-01 00:44:34,919 [ scc.git] DEBUG HEAD is now at 03b9116 Merge pull request #228 from ome/dependabot/github_actions/dot-github/workflows/pypa/gh-action-pypi-publish-1.13.0
2025-10-01 00:44:35,065 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-01 00:44:35,066 [ scc.git] DEBUG Calling 'git merge-base 03b9116196e1a799dd18a666559613d912be01a5 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-10-01 00:44:35,071 [ scc.git] DEBUG Calling 'git diff --name-only a90f59802f6752ad74badec5c0c1d6b0c9c43b15..03b9116196e1a799dd18a666559613d912be01a5'
2025-10-01 00:44:35,074 [ scc.git] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Conflicting PR. Removed from build [OMERO-plugins-push#547](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/547/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/547/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero/annotation_scripts/KeyVal_to_csv.py
--conflicts
2025-10-01 00:44:35,076 [ scc.config] DEBUG Found github.token
2025-10-01 00:44:35,076 [ scc.git] DEBUG Not adding comment to issue #202, already --conflicts.
2025-10-01 00:44:35,076 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-10-01 00:44:35,080 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:44:35,082 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 223 (don't attempt ROI stats on big images) d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-10-01 00:44:35,090 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-10-01 00:44:35,092 [ scc.git] DEBUG omero/export_scripts/Batch_ROI_Export.py | 9 ++++++++-
2025-10-01 00:44:35,092 [ scc.git] DEBUG 1 file changed, 8 insertions(+), 1 deletion(-)
2025-10-01 00:44:35,484 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-01 00:44:35,485 [ scc.git] DEBUG Calling 'git submodule update'
2025-10-01 00:44:35,522 [ scc.git] DEBUG Get sha1 of %s
2025-10-01 00:44:35,522 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-01 00:44:35,524 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-10-01 00:44:35,560 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-10-01 00:44:35,563 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f0c287170d0> has no local changes
2025-10-01 00:44:35,563 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..03b9116
Previously merged:
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#547 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/547/)'
2025-10-01 00:44:35,569 [ scc.git] DEBUG [detached HEAD 289d7f5] merge master -Dorg -Ssuccess-only
2025-10-01 00:44:35,569 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-01 00:44:35,569 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-10-01 00:44:35,636 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2025-10-01 00:44:35,896 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-01 00:44:35,901 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2025-10-01 00:44:35,902 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2025-10-01 00:44:36,285 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-01 00:44:36,290 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2025-10-01 00:44:36,292 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2025-10-01 00:44:36,683 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-01 00:44:36,688 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2025-10-01 00:44:36,689 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2025-10-01 00:44:37,081 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-01 00:44:37,087 [ scc.config] DEBUG Found submodule.omero-figure.url
2025-10-01 00:44:37,477 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-01 00:44:37,481 [ scc.config] DEBUG Found submodule.omero-figure.branch
2025-10-01 00:44:37,483 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2025-10-01 00:44:37,867 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-01 00:44:37,872 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2025-10-01 00:44:37,874 [ scc.config] DEBUG Found submodule.omero-gallery.url
2025-10-01 00:44:38,261 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-01 00:44:38,266 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2025-10-01 00:44:38,268 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2025-10-01 00:44:38,655 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-01 00:44:38,659 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2025-10-01 00:44:38,660 [ scc.config] DEBUG Found submodule.omero-mapr.url
2025-10-01 00:44:39,055 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-01 00:44:39,059 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2025-10-01 00:44:39,061 [ scc.config] DEBUG Found submodule.omero-metadata.url
2025-10-01 00:44:39,450 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-01 00:44:39,454 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2025-10-01 00:44:39,456 [ scc.config] DEBUG Found submodule.omero-parade.url
2025-10-01 00:44:39,844 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-01 00:44:39,848 [ scc.config] DEBUG Found submodule.omero-parade.branch
2025-10-01 00:44:39,849 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2025-10-01 00:44:40,238 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-01 00:44:40,242 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2025-10-01 00:44:40,244 [ scc.config] DEBUG Found submodule.omero-rois.url
2025-10-01 00:44:40,635 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-01 00:44:40,640 [ scc.config] DEBUG Found submodule.omero-signup.url
2025-10-01 00:44:41,022 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-01 00:44:41,028 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2025-10-01 00:44:41,420 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-01 00:44:41,424 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2025-10-01 00:44:41,426 [ scc.config] DEBUG Found submodule.omero-upload.url
2025-10-01 00:44:41,811 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-01 00:44:41,817 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2025-10-01 00:44:42,198 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-01 00:44:42,204 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2025-10-01 00:44:42,587 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-01 00:44:42,591 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2025-10-01 00:44:42,593 [ scc.config] DEBUG Found submodule.omero-weberror.url
2025-10-01 00:44:42,990 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-01 00:44:42,994 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2025-10-01 00:44:42,996 [ scc.config] DEBUG Found submodule.omero-webtest.url
2025-10-01 00:44:43,404 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-01 00:44:43,408 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2025-10-01 00:44:43,410 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2025-10-01 00:44:43,788 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-01 00:44:43,792 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2025-10-01 00:44:43,794 [ scc.config] DEBUG Found submodule.scripts.url
2025-10-01 00:44:44,203 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-01 00:44:44,208 [ scc.config] DEBUG Found submodule.scripts.branch
2025-10-01 00:44:44,208 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-10-01 00:44:44,282 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f0c3203b210> has local changes
2025-10-01 00:44:44,282 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Merged PRs:
- PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-cli-render
Excluded PRs:
- PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Already up to date.
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
- PR 69 dominikl 'Fix help text for impo/export commands'
- PR 71 dominikl 'Escape slash character in image names'
- PR 73 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 174 will-moore 'Skip wells' (stage: draft)
- PR 170 will-moore 'Use ome zarr models py' (stage: draft)
- PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
- PR 167 dominikl 'Add extinfo command' (stage: draft)
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..37ea700
Previously merged:
- PR 180 will-moore 'Import command'
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py'
Conflicting PRs (not included):
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
- PR 181 will-moore 'Add labels support for import'
- PR 182 will-moore 'Revert "Remove support for Plate import"'
Repository: ome/omero-figure
Excluded PRs:
- PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
- PR 619 will-moore 'OME-Zarr support' (stage: draft)
- PR 543 will-moore 'Plate well labels' (exclude comment)
Updating 9cc36cde..baab5c06
Previously merged:
- PR 612 will-moore 'Script version'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 616 Rdornier 'Fix labels around border'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 600 Rdornier 'Label on rois'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 642 dependabot[bot] 'Bump vite from 6.2.6 to 6.3.6'
Conflicting PRs (not included):
- PR 637 Rdornier 'Fix scalebar position'
- PR 643 Rdornier 'Shape scaling'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
- PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 508 will-moore 'Broadcast channel demo' (stage: draft)
- PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..bb94cf8
Previously merged:
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
Conflicting PRs (not included):
- PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
- PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
- PR 76 will-moore 'Run cli deps'
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..00e0207
Previously merged:
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..03b9116
Previously merged:
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#547 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/547/)'
2025-10-01 00:44:44,292 [ scc.git] DEBUG [detached HEAD 7bd3636] merge master -Dorg -Ssuccess-only
2025-10-01 00:44:44,292 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-)
2025-10-01 00:44:44,292 [ scc.merge] INFO Repository: ome/omero-plugins
2025-10-01 00:44:44,292 [ scc.merge] INFO Already up to date.
2025-10-01 00:44:44,292 [ scc.merge] INFO
2025-10-01 00:44:44,293 [ scc.merge] INFO Merged PRs:
2025-10-01 00:44:44,293 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2025-10-01 00:44:44,293 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2025-10-01 00:44:44,293 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2025-10-01 00:44:44,293 [ scc.merge] INFO
2025-10-01 00:44:44,293 [ scc.merge] INFO Repository: ome/minimal-omero-client
2025-10-01 00:44:44,293 [ scc.merge] INFO Already up to date.
2025-10-01 00:44:44,293 [ scc.merge] INFO
2025-10-01 00:44:44,293 [ scc.merge] INFO
2025-10-01 00:44:44,293 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2025-10-01 00:44:44,293 [ scc.merge] INFO Excluded PRs:
2025-10-01 00:44:44,293 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2025-10-01 00:44:44,293 [ scc.merge] INFO Already up to date.
2025-10-01 00:44:44,293 [ scc.merge] INFO
2025-10-01 00:44:44,293 [ scc.merge] INFO Merged PRs:
2025-10-01 00:44:44,293 [ scc.merge] INFO - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-10-01 00:44:44,293 [ scc.merge] INFO
2025-10-01 00:44:44,293 [ scc.merge] INFO Repository: ome/omero-cli-render
2025-10-01 00:44:44,293 [ scc.merge] INFO Excluded PRs:
2025-10-01 00:44:44,293 [ scc.merge] INFO - PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
2025-10-01 00:44:44,293 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2025-10-01 00:44:44,293 [ scc.merge] INFO Already up to date.
2025-10-01 00:44:44,293 [ scc.merge] INFO
2025-10-01 00:44:44,293 [ scc.merge] INFO Merged PRs:
2025-10-01 00:44:44,293 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2025-10-01 00:44:44,293 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2025-10-01 00:44:44,293 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2025-10-01 00:44:44,293 [ scc.merge] INFO - PR 73 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-10-01 00:44:44,293 [ scc.merge] INFO
2025-10-01 00:44:44,293 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2025-10-01 00:44:44,293 [ scc.merge] INFO Excluded PRs:
2025-10-01 00:44:44,293 [ scc.merge] INFO - PR 174 will-moore 'Skip wells' (stage: draft)
2025-10-01 00:44:44,293 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft)
2025-10-01 00:44:44,293 [ scc.merge] INFO - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
2025-10-01 00:44:44,293 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft)
2025-10-01 00:44:44,293 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2025-10-01 00:44:44,293 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-10-01 00:44:44,293 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2025-10-01 00:44:44,293 [ scc.merge] INFO Updating 11d3587..37ea700
2025-10-01 00:44:44,293 [ scc.merge] INFO Previously merged:
2025-10-01 00:44:44,293 [ scc.merge] INFO - PR 180 will-moore 'Import command'
2025-10-01 00:44:44,293 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2025-10-01 00:44:44,293 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2025-10-01 00:44:44,293 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2025-10-01 00:44:44,293 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2025-10-01 00:44:44,293 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2025-10-01 00:44:44,293 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2025-10-01 00:44:44,293 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-10-01 00:44:44,293 [ scc.merge] INFO
2025-10-01 00:44:44,294 [ scc.merge] INFO Merged PRs:
2025-10-01 00:44:44,294 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py'
2025-10-01 00:44:44,294 [ scc.merge] INFO
2025-10-01 00:44:44,294 [ scc.merge] INFO Conflicting PRs (not included):
2025-10-01 00:44:44,294 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2025-10-01 00:44:44,294 [ scc.merge] INFO - PR 181 will-moore 'Add labels support for import'
2025-10-01 00:44:44,294 [ scc.merge] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"'
2025-10-01 00:44:44,294 [ scc.merge] INFO
2025-10-01 00:44:44,294 [ scc.merge] INFO Repository: ome/omero-figure
2025-10-01 00:44:44,294 [ scc.merge] INFO Excluded PRs:
2025-10-01 00:44:44,294 [ scc.merge] INFO - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
2025-10-01 00:44:44,294 [ scc.merge] INFO - PR 619 will-moore 'OME-Zarr support' (stage: draft)
2025-10-01 00:44:44,294 [ scc.merge] INFO - PR 543 will-moore 'Plate well labels' (exclude comment)
2025-10-01 00:44:44,294 [ scc.merge] INFO Updating 9cc36cde..baab5c06
2025-10-01 00:44:44,294 [ scc.merge] INFO Previously merged:
2025-10-01 00:44:44,294 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2025-10-01 00:44:44,294 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2025-10-01 00:44:44,294 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2025-10-01 00:44:44,294 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2025-10-01 00:44:44,294 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2025-10-01 00:44:44,294 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2025-10-01 00:44:44,294 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2025-10-01 00:44:44,294 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2025-10-01 00:44:44,294 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-10-01 00:44:44,294 [ scc.merge] INFO
2025-10-01 00:44:44,294 [ scc.merge] INFO Merged PRs:
2025-10-01 00:44:44,294 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2025-10-01 00:44:44,294 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2025-10-01 00:44:44,294 [ scc.merge] INFO - PR 642 dependabot[bot] 'Bump vite from 6.2.6 to 6.3.6'
2025-10-01 00:44:44,294 [ scc.merge] INFO
2025-10-01 00:44:44,294 [ scc.merge] INFO Conflicting PRs (not included):
2025-10-01 00:44:44,294 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2025-10-01 00:44:44,294 [ scc.merge] INFO - PR 643 Rdornier 'Shape scaling'
2025-10-01 00:44:44,294 [ scc.merge] INFO
2025-10-01 00:44:44,294 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2025-10-01 00:44:44,294 [ scc.merge] INFO Already up to date.
2025-10-01 00:44:44,294 [ scc.merge] INFO
2025-10-01 00:44:44,294 [ scc.merge] INFO Merged PRs:
2025-10-01 00:44:44,294 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2025-10-01 00:44:44,294 [ scc.merge] INFO - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-10-01 00:44:44,294 [ scc.merge] INFO
2025-10-01 00:44:44,294 [ scc.merge] INFO Repository: ome/omero-gallery
2025-10-01 00:44:44,294 [ scc.merge] INFO Already up to date.
2025-10-01 00:44:44,294 [ scc.merge] INFO
2025-10-01 00:44:44,294 [ scc.merge] INFO Merged PRs:
2025-10-01 00:44:44,294 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2025-10-01 00:44:44,294 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2025-10-01 00:44:44,294 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2025-10-01 00:44:44,294 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2025-10-01 00:44:44,294 [ scc.merge] INFO
2025-10-01 00:44:44,294 [ scc.merge] INFO Conflicting PRs (not included):
2025-10-01 00:44:44,294 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2025-10-01 00:44:44,295 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2025-10-01 00:44:44,295 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2025-10-01 00:44:44,295 [ scc.merge] INFO
2025-10-01 00:44:44,295 [ scc.merge] INFO Repository: ome/omero-iviewer
2025-10-01 00:44:44,295 [ scc.merge] INFO Excluded PRs:
2025-10-01 00:44:44,295 [ scc.merge] INFO - PR 508 will-moore 'Broadcast channel demo' (stage: draft)
2025-10-01 00:44:44,295 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
2025-10-01 00:44:44,295 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
2025-10-01 00:44:44,295 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2025-10-01 00:44:44,295 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2025-10-01 00:44:44,295 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure)
2025-10-01 00:44:44,295 [ scc.merge] INFO Updating 7a798ce..bb94cf8
2025-10-01 00:44:44,295 [ scc.merge] INFO Previously merged:
2025-10-01 00:44:44,295 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-10-01 00:44:44,295 [ scc.merge] INFO
2025-10-01 00:44:44,295 [ scc.merge] INFO Merged PRs:
2025-10-01 00:44:44,295 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix'
2025-10-01 00:44:44,295 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2025-10-01 00:44:44,295 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2025-10-01 00:44:44,295 [ scc.merge] INFO - PR 499 dependabot[bot] 'Bump nanoid and mocha'
2025-10-01 00:44:44,295 [ scc.merge] INFO
2025-10-01 00:44:44,295 [ scc.merge] INFO Conflicting PRs (not included):
2025-10-01 00:44:44,295 [ scc.merge] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
2025-10-01 00:44:44,295 [ scc.merge] INFO
2025-10-01 00:44:44,295 [ scc.merge] INFO Repository: ome/omero-mapr
2025-10-01 00:44:44,295 [ scc.merge] INFO Excluded PRs:
2025-10-01 00:44:44,295 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2025-10-01 00:44:44,295 [ scc.merge] INFO Already up to date.
2025-10-01 00:44:44,295 [ scc.merge] INFO
2025-10-01 00:44:44,295 [ scc.merge] INFO Merged PRs:
2025-10-01 00:44:44,295 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient'
2025-10-01 00:44:44,295 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-10-01 00:44:44,295 [ scc.merge] INFO
2025-10-01 00:44:44,295 [ scc.merge] INFO Conflicting PRs (not included):
2025-10-01 00:44:44,295 [ scc.merge] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-10-01 00:44:44,295 [ scc.merge] INFO
2025-10-01 00:44:44,295 [ scc.merge] INFO Repository: ome/omero-metadata
2025-10-01 00:44:44,295 [ scc.merge] INFO Updating 3cd120c..55060a2
2025-10-01 00:44:44,295 [ scc.merge] INFO Previously merged:
2025-10-01 00:44:44,295 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-10-01 00:44:44,295 [ scc.merge] INFO
2025-10-01 00:44:44,295 [ scc.merge] INFO Conflicting PRs (not included):
2025-10-01 00:44:44,295 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-10-01 00:44:44,295 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-10-01 00:44:44,295 [ scc.merge] INFO
2025-10-01 00:44:44,295 [ scc.merge] INFO Repository: ome/omero-parade
2025-10-01 00:44:44,295 [ scc.merge] INFO Excluded PRs:
2025-10-01 00:44:44,295 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2025-10-01 00:44:44,295 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2025-10-01 00:44:44,295 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2025-10-01 00:44:44,295 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2025-10-01 00:44:44,296 [ scc.merge] INFO Already up to date.
2025-10-01 00:44:44,296 [ scc.merge] INFO
2025-10-01 00:44:44,296 [ scc.merge] INFO Merged PRs:
2025-10-01 00:44:44,296 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-10-01 00:44:44,296 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-10-01 00:44:44,296 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-10-01 00:44:44,296 [ scc.merge] INFO
2025-10-01 00:44:44,296 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2025-10-01 00:44:44,296 [ scc.merge] INFO Already up to date.
2025-10-01 00:44:44,296 [ scc.merge] INFO
2025-10-01 00:44:44,296 [ scc.merge] INFO Merged PRs:
2025-10-01 00:44:44,296 [ scc.merge] INFO - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-10-01 00:44:44,296 [ scc.merge] INFO
2025-10-01 00:44:44,296 [ scc.merge] INFO Repository: ome/omero-rois
2025-10-01 00:44:44,296 [ scc.merge] INFO Excluded PRs:
2025-10-01 00:44:44,296 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-10-01 00:44:44,296 [ scc.merge] INFO Already up to date.
2025-10-01 00:44:44,296 [ scc.merge] INFO
2025-10-01 00:44:44,296 [ scc.merge] INFO Merged PRs:
2025-10-01 00:44:44,296 [ scc.merge] INFO - PR 33 jo-mueller 'Add roi to array functions'
2025-10-01 00:44:44,296 [ scc.merge] INFO - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-10-01 00:44:44,296 [ scc.merge] INFO
2025-10-01 00:44:44,296 [ scc.merge] INFO Repository: ome/omero-signup
2025-10-01 00:44:44,296 [ scc.merge] INFO Already up to date.
2025-10-01 00:44:44,296 [ scc.merge] INFO
2025-10-01 00:44:44,296 [ scc.merge] INFO Merged PRs:
2025-10-01 00:44:44,296 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-10-01 00:44:44,296 [ scc.merge] INFO
2025-10-01 00:44:44,296 [ scc.merge] INFO Conflicting PRs (not included):
2025-10-01 00:44:44,296 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2025-10-01 00:44:44,296 [ scc.merge] INFO
2025-10-01 00:44:44,296 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2025-10-01 00:44:44,296 [ scc.merge] INFO Excluded PRs:
2025-10-01 00:44:44,296 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2025-10-01 00:44:44,296 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
2025-10-01 00:44:44,296 [ scc.merge] INFO - PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
2025-10-01 00:44:44,296 [ scc.merge] INFO Already up to date.
2025-10-01 00:44:44,296 [ scc.merge] INFO
2025-10-01 00:44:44,296 [ scc.merge] INFO Merged PRs:
2025-10-01 00:44:44,296 [ scc.merge] INFO - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-10-01 00:44:44,296 [ scc.merge] INFO - PR 76 will-moore 'Run cli deps'
2025-10-01 00:44:44,296 [ scc.merge] INFO
2025-10-01 00:44:44,296 [ scc.merge] INFO Repository: ome/omero-upload
2025-10-01 00:44:44,296 [ scc.merge] INFO Already up to date.
2025-10-01 00:44:44,296 [ scc.merge] INFO
2025-10-01 00:44:44,296 [ scc.merge] INFO Merged PRs:
2025-10-01 00:44:44,296 [ scc.merge] INFO - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-10-01 00:44:44,296 [ scc.merge] INFO
2025-10-01 00:44:44,296 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2025-10-01 00:44:44,296 [ scc.merge] INFO Updating deab817..160d894
2025-10-01 00:44:44,296 [ scc.merge] INFO Previously merged:
2025-10-01 00:44:44,296 [ scc.merge] INFO - PR 20 jburel 'Build'
2025-10-01 00:44:44,297 [ scc.merge] INFO
2025-10-01 00:44:44,297 [ scc.merge] INFO Merged PRs:
2025-10-01 00:44:44,297 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-10-01 00:44:44,297 [ scc.merge] INFO
2025-10-01 00:44:44,297 [ scc.merge] INFO Repository: ome/omero-web-zarr
2025-10-01 00:44:44,297 [ scc.merge] INFO Excluded PRs:
2025-10-01 00:44:44,297 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2025-10-01 00:44:44,297 [ scc.merge] INFO Updating 8f3c313..00e0207
2025-10-01 00:44:44,297 [ scc.merge] INFO Previously merged:
2025-10-01 00:44:44,297 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2025-10-01 00:44:44,297 [ scc.merge] INFO
2025-10-01 00:44:44,297 [ scc.merge] INFO Merged PRs:
2025-10-01 00:44:44,297 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import'
2025-10-01 00:44:44,297 [ scc.merge] INFO
2025-10-01 00:44:44,297 [ scc.merge] INFO Conflicting PRs (not included):
2025-10-01 00:44:44,297 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-10-01 00:44:44,297 [ scc.merge] INFO
2025-10-01 00:44:44,297 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2025-10-01 00:44:44,297 [ scc.merge] INFO Already up to date.
2025-10-01 00:44:44,297 [ scc.merge] INFO
2025-10-01 00:44:44,297 [ scc.merge] INFO Merged PRs:
2025-10-01 00:44:44,297 [ scc.merge] INFO - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-10-01 00:44:44,297 [ scc.merge] INFO
2025-10-01 00:44:44,297 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2025-10-01 00:44:44,297 [ scc.merge] INFO Already up to date.
2025-10-01 00:44:44,297 [ scc.merge] INFO
2025-10-01 00:44:44,297 [ scc.merge] INFO Merged PRs:
2025-10-01 00:44:44,297 [ scc.merge] INFO - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-10-01 00:44:44,297 [ scc.merge] INFO
2025-10-01 00:44:44,297 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2025-10-01 00:44:44,297 [ scc.merge] INFO Already up to date.
2025-10-01 00:44:44,297 [ scc.merge] INFO
2025-10-01 00:44:44,297 [ scc.merge] INFO Conflicting PRs (not included):
2025-10-01 00:44:44,297 [ scc.merge] INFO - PR 100 dominikl 'Run tests properly'
2025-10-01 00:44:44,297 [ scc.merge] INFO
2025-10-01 00:44:44,297 [ scc.merge] INFO Repository: ome/scripts
2025-10-01 00:44:44,297 [ scc.merge] INFO Excluded PRs:
2025-10-01 00:44:44,297 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
2025-10-01 00:44:44,297 [ scc.merge] INFO - PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
2025-10-01 00:44:44,297 [ scc.merge] INFO Updating 4b4c755..03b9116
2025-10-01 00:44:44,297 [ scc.merge] INFO Previously merged:
2025-10-01 00:44:44,297 [ scc.merge] INFO - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
2025-10-01 00:44:44,297 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2025-10-01 00:44:44,297 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2025-10-01 00:44:44,297 [ scc.merge] INFO
2025-10-01 00:44:44,297 [ scc.merge] INFO Merged PRs:
2025-10-01 00:44:44,297 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-10-01 00:44:44,297 [ scc.merge] INFO
2025-10-01 00:44:44,297 [ scc.merge] INFO Conflicting PRs (not included):
2025-10-01 00:44:44,297 [ scc.merge] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-10-01 00:44:44,297 [ scc.merge] INFO
2025-10-01 00:44:44,298 [ scc.merge] DEBUG Cleaning remote branches created for merging
2025-10-01 00:44:44,298 [ scc.git] DEBUG Calling 'git remote'
2025-10-01 00:44:44,299 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2025-10-01 00:44:44,299 [ scc.git] DEBUG Calling 'git remote'
2025-10-01 00:44:44,301 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-01 00:44:44,301 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2025-10-01 00:44:44,302 [ scc.git] DEBUG Calling 'git remote'
2025-10-01 00:44:44,303 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-01 00:44:44,303 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2025-10-01 00:44:44,303 [ scc.git] DEBUG Calling 'git remote'
2025-10-01 00:44:44,305 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-01 00:44:44,305 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2025-10-01 00:44:44,305 [ scc.git] DEBUG Calling 'git remote'
2025-10-01 00:44:44,307 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-01 00:44:44,307 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2025-10-01 00:44:44,307 [ scc.git] DEBUG Calling 'git remote'
2025-10-01 00:44:44,309 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-01 00:44:44,309 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2025-10-01 00:44:44,309 [ scc.git] DEBUG Calling 'git remote'
2025-10-01 00:44:44,311 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-01 00:44:44,311 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2025-10-01 00:44:44,311 [ scc.git] DEBUG Calling 'git remote'
2025-10-01 00:44:44,313 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-01 00:44:44,313 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2025-10-01 00:44:44,313 [ scc.git] DEBUG Calling 'git remote'
2025-10-01 00:44:44,315 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-01 00:44:44,315 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2025-10-01 00:44:44,315 [ scc.git] DEBUG Calling 'git remote'
2025-10-01 00:44:44,317 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-01 00:44:44,317 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-10-01 00:44:44,317 [ scc.git] DEBUG Calling 'git remote'
2025-10-01 00:44:44,319 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-01 00:44:44,319 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-10-01 00:44:44,319 [ scc.git] DEBUG Calling 'git remote'
2025-10-01 00:44:44,321 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-01 00:44:44,321 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-10-01 00:44:44,321 [ scc.git] DEBUG Calling 'git remote'
2025-10-01 00:44:44,323 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-01 00:44:44,323 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-10-01 00:44:44,323 [ scc.git] DEBUG Calling 'git remote'
2025-10-01 00:44:44,325 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-01 00:44:44,325 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-10-01 00:44:44,325 [ scc.git] DEBUG Calling 'git remote'
2025-10-01 00:44:44,327 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-01 00:44:44,327 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-10-01 00:44:44,327 [ scc.git] DEBUG Calling 'git remote'
2025-10-01 00:44:44,329 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-01 00:44:44,329 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-10-01 00:44:44,329 [ scc.git] DEBUG Calling 'git remote'
2025-10-01 00:44:44,331 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-01 00:44:44,331 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-10-01 00:44:44,331 [ scc.git] DEBUG Calling 'git remote'
2025-10-01 00:44:44,332 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-01 00:44:44,333 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-10-01 00:44:44,333 [ scc.git] DEBUG Calling 'git remote'
2025-10-01 00:44:44,334 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-01 00:44:44,334 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-10-01 00:44:44,334 [ scc.git] DEBUG Calling 'git remote'
2025-10-01 00:44:44,336 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-01 00:44:44,336 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-10-01 00:44:44,336 [ scc.git] DEBUG Calling 'git remote'
2025-10-01 00:44:44,338 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-01 00:44:44,338 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-10-01 00:44:44,338 [ scc.git] DEBUG Calling 'git remote'
2025-10-01 00:44:44,340 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-01 00:44:44,340 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-10-01 00:44:44,340 [ scc.git] DEBUG Calling 'git remote'
2025-10-01 00:44:44,342 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.10.4-SNAPSHOT
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Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD a9c8520] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798ce
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD c2a1854] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2025-10-01 00:45:31,070 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2025-10-01 00:45:40,268 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2025-10-01 00:45:42,693 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-10-01 00:45:47,376 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-10-01 00:46:27,149 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
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