08:21:12Started by upstream project "Trigger" build number 39608:21:12originally caused by:
08:21:12 Started by timer
08:21:12Running as SYSTEM
08:21:12Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push
08:21:13The recommended git tool is: NONE
08:21:13No credentials specified
08:21:13 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10
08:21:13Fetching changes from the remote Git repository
08:21:13 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10
08:21:13Fetching upstream changes from https://github.com/ome/openmicroscopy.git08:21:13 > git --version # timeout=10
08:21:13 > git --version # 'git version 2.43.5'
08:21:13 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
08:21:15 > git rev-parse origin/develop^{commit} # timeout=10
08:21:15Checking out Revision 1ae1bfa5b831dc0225df48dbef7871cc6ab044f6 (origin/develop)
08:21:15 > git config core.sparsecheckout # timeout=10
08:21:15 > git checkout -f 1ae1bfa5b831dc0225df48dbef7871cc6ab044f6 # timeout=30
08:21:16Commit message: "Merge pull request #6409 from sbesson/jul_jcl_2.x"
08:21:16 > git rev-list --no-walk 1ae1bfa5b831dc0225df48dbef7871cc6ab044f6 # timeout=10
08:21:16Cleaning workspace
08:21:16 > git rev-parse --verify HEAD # timeout=10
08:21:16Resetting working tree
08:21:16 > git reset --hard # timeout=10
08:21:16 > git clean -fdx # timeout=10
08:21:16Copied 1 artifact from "OMERO-python-superbuild-build" build number 33808:21:16[OMERO-push] $ /bin/bash -xe /tmp/jenkins395411342099558217.sh
08:21:16+ python3 -mvenv venv
08:21:18+ source /home/omero/workspace/OMERO-push/venv/bin/activate
08:21:18++ deactivate nondestructive
08:21:18++ '[' -n '' ']'
08:21:18++ '[' -n '' ']'
08:21:18++ '[' -n /bin/bash -o -n '' ']'
08:21:18++ hash -r
08:21:18++ '[' -n '' ']'
08:21:18++ unset VIRTUAL_ENV
08:21:18++ '[' '!' nondestructive = nondestructive ']'
08:21:18++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv
08:21:18++ export VIRTUAL_ENV
08:21:18++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
08:21:18++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
08:21:18++ export PATH
08:21:18++ '[' -n '' ']'
08:21:18++ '[' -z '' ']'
08:21:18++ _OLD_VIRTUAL_PS1=
08:21:18++ PS1='(venv) '
08:21:18++ export PS1
08:21:18++ '[' -n /bin/bash -o -n '' ']'
08:21:18++ hash -r
08:21:18+ pip install -U pip
08:21:22Requirement already satisfied: pip in ./venv/lib/python3.9/site-packages (25.0.1)
08:21:22+ pip install -U scc
08:21:23Requirement already satisfied: scc in ./venv/lib/python3.9/site-packages (0.20.0)
08:21:23Requirement already satisfied: PyGithub>=1.54 in ./venv/lib/python3.9/site-packages (from scc) (2.2.0)
08:21:23Requirement already satisfied: PyYAML>=5.1 in ./venv/lib/python3.9/site-packages (from scc) (6.0.1)
08:21:23Requirement already satisfied: future in ./venv/lib/python3.9/site-packages (from scc) (1.0.0)
08:21:23Requirement already satisfied: ruamel.yaml in ./venv/lib/python3.9/site-packages (from scc) (0.18.6)
08:21:23Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib/python3.9/site-packages (from scc) (0.2.7)
08:21:23Requirement already satisfied: six in ./venv/lib/python3.9/site-packages (from scc) (1.16.0)
08:21:23Requirement already satisfied: urllib3<2 in ./venv/lib/python3.9/site-packages (from scc) (1.26.18)
08:21:23Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib/python3.9/site-packages (from scc) (0.2.0)
08:21:23Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (1.5.0)
08:21:23Requirement already satisfied: requests>=2.14.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (2.31.0)
08:21:23Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib/python3.9/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.8.0)
08:21:23Requirement already satisfied: typing-extensions>=4.0.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (4.10.0)
08:21:23Requirement already satisfied: Deprecated in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (1.2.14)
08:21:23Requirement already satisfied: ruamel.yaml.clib>=0.2.7 in ./venv/lib/python3.9/site-packages (from ruamel.yaml->scc) (0.2.8)
08:21:23Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib/python3.9/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (42.0.5)
08:21:23Requirement already satisfied: cffi>=1.4.1 in ./venv/lib/python3.9/site-packages (from pynacl>=1.4.0->PyGithub>=1.54->scc) (1.16.0)
08:21:23Requirement already satisfied: charset-normalizer<4,>=2 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.3.2)
08:21:23Requirement already satisfied: idna<4,>=2.5 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.6)
08:21:23Requirement already satisfied: certifi>=2017.4.17 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2024.2.2)
08:21:23Requirement already satisfied: wrapt<2,>=1.10 in ./venv/lib/python3.9/site-packages (from Deprecated->PyGithub>=1.54->scc) (1.16.0)
08:21:23Requirement already satisfied: pycparser in ./venv/lib/python3.9/site-packages (from cffi>=1.4.1->pynacl>=1.4.0->PyGithub>=1.54->scc) (2.21)
08:21:23+ test -e src
08:21:23+ cd src
08:21:23++ git config github.user
08:21:23+ user=snoopycrimecop
08:21:23+ scc merge develop --no-ask --reset --shallow -S success-only
08:21:282025-03-10 08:21:28,859 [ scc.merge] INFO Merging Pull Request(s) based on develop
08:21:282025-03-10 08:21:28,860 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
08:21:282025-03-10 08:21:28,860 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
08:21:282025-03-10 08:21:28,860 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
08:21:282025-03-10 08:21:28,860 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
08:21:282025-03-10 08:21:28,860 [ scc.merge] INFO Excluding Pull Request(s) without successful status
08:21:552025-03-10 08:21:55,248 [ scc.merge] INFO Repository: ome/openmicroscopy
08:21:552025-03-10 08:21:55,249 [ scc.merge] INFO Excluded PRs:
08:21:552025-03-10 08:21:55,249 [ scc.merge] INFO - PR 6319 dominikl 'Add integration test for joining session' (exclude comment)
08:21:552025-03-10 08:21:55,249 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment)
08:21:552025-03-10 08:21:55,249 [ scc.merge] INFO - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (label: exclude)
08:21:552025-03-10 08:21:55,249 [ scc.merge] INFO Already up to date.
08:21:552025-03-10 08:21:55,249 [ scc.merge] INFO
08:21:552025-03-10 08:21:55,249 [ scc.merge] INFO Merged PRs:
08:21:552025-03-10 08:21:55,249 [ scc.merge] INFO - PR 6309 jburel 'add try block'
08:21:552025-03-10 08:21:55,249 [ scc.merge] INFO - PR 6353 jburel 'remove dependencies'
08:21:552025-03-10 08:21:55,249 [ scc.merge] INFO - PR 6417 snoopycrimecop 'update dependencies'
08:21:552025-03-10 08:21:55,249 [ scc.merge] INFO - PR 6418 sbesson 'Remove JUL over SLF4J and JCL over SLF4J as OMERO server dependencies'
08:21:552025-03-10 08:21:55,249 [ scc.merge] INFO - PR 6419 sbesson 'OMERO.web: improve the CSRF tests coverage'
08:21:552025-03-10 08:21:55,249 [ scc.merge] INFO - PR 6420 sbesson 'OMERO.web:test login requests with JSON'
08:21:552025-03-10 08:21:55,249 [ scc.merge] INFO
08:21:55+ cp etc/omero.properties etc/omero.properties.bak
08:21:55+ rm etc/omero.properties
08:21:55+ touch etc/omero.properties
08:21:55++ sed -n '/Internal dependencies/=' etc/omero.properties.bak
08:21:55+ ne=249
08:21:55++ sed -n 1,249p etc/omero.properties.bak
08:21:55+ line='##
08:21:55## omero.properties
08:21:55## ----------------
08:21:55##
08:21:55## DO NOT EDIT!
08:21:55##
08:21:55##
08:21:55## Any of these properties can be altered by using `omero config`. MODIFYING
08:21:55## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
08:21:55## at compile time!
08:21:55##
08:21:55## For an overview of these properties, see
08:21:55## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html08:21:55##
08:21:55## Properties marked with "DEVELOPMENT" should not be used in production.
08:21:5508:21:55# Comma separated list of Ice transports available to clients. The default
08:21:55# value ("ssl,tcp") instructs Ice to open the ports specified by the
08:21:55# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
08:21:55# will prevent all non-encrypted connections to the OMERO server.
08:21:55#
08:21:55# Additionally, there are two experimental values for using websockets:
08:21:55# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
08:21:55# that are opened are controlled by the omero.ports.ws and omero.ports.wss
08:21:55# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
08:21:55#
08:21:55# Note: When using websockets behind a web server like nginx, additional
08:21:55# configuration may be needed.
08:21:55omero.client.icetransports=ssl,tcp
08:21:5508:21:55# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
08:21:55# server
08:21:55omero.ports.prefix=
08:21:5508:21:55# The Glacier2 SSL port number to use
08:21:55omero.ports.ssl=4064
08:21:5508:21:55# The Glacier2 TCP port number to use (unencrypted)
08:21:55omero.ports.tcp=4063
08:21:5508:21:55# The Glacier2 WSS port number to use
08:21:55omero.ports.wss=4066
08:21:5508:21:55# The Glacier2 WS port number to use (unencrypted)
08:21:55omero.ports.ws=4065
08:21:5508:21:55# The IceGrid registry port number to use
08:21:55omero.ports.registry=4061
08:21:5508:21:55#############################################
08:21:55## JVM configuration
08:21:55##
08:21:55## Note: changes to the omero.jvmcfg properties
08:21:55## will *not* be reflected in OMERO.server
08:21:55## since they are defined in OMERO.py.
08:21:55#############################################
08:21:55## (For documentation only)
08:21:55# Memory strategy which will be used by default.
08:21:55# Options include: percent, manual
08:21:55omero.jvmcfg.strategy=percent
08:21:5508:21:55## (For documentation only)
08:21:55# Explicit value for the `-Xmx` argument, e.g.
08:21:55# "1g"
08:21:55omero.jvmcfg.heap_size=
08:21:5508:21:55## (For documentation only)
08:21:55# Explicit value for the MaxPermSize argument
08:21:55# to the JVM, e.g. "500M". Ignored for Java8+
08:21:55omero.jvmcfg.perm_gen=
08:21:5508:21:55## (For documentation only)
08:21:55# Toggles on or off heap dumps on OOMs. Default is "off".
08:21:55# The special value "tmp" will create the heap dumps in
08:21:55# your temp directory.
08:21:55omero.jvmcfg.heap_dump=
08:21:5508:21:55## (For documentation only)
08:21:55# Used only by the percent strategy. An integer between 0
08:21:55# and 100 which is the percent of active memory that will
08:21:55# be used by the service.
08:21:55omero.jvmcfg.percent=
08:21:5508:21:55## (For documentation only)
08:21:55# Contains other parameters which should be passed to the
08:21:55# JVM. The value of "append" is treated as if it were on
08:21:55# the command line so will be separated on whitespace.
08:21:55# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
08:21:55# results in two new arguments.
08:21:55# Note that when using `config set` from the command line
08:21:55# one may need to give a prior `--` option to prevent a value
08:21:55# starting with `-` from already being parsed as an option,
08:21:55# and values may need quoting to prevent whitespace or other
08:21:55# significant characters from being interpreted prematurely.
08:21:5508:21:55omero.jvmcfg.append=
08:21:5508:21:55## (For documentation only)
08:21:55# Manual override of the total system memory that
08:21:55# OMERO will *think* is present on the local OS (MB).
08:21:55# If unset, an attempt will be made to detect the actual
08:21:55# amount: first by using the Python library `psutil` and
08:21:55# if that is not installed, by running a Java tool. If
08:21:55# neither works, 4.0GB is assumed.
08:21:55omero.jvmcfg.system_memory=
08:21:5508:21:55## (For documentation only)
08:21:55# Suggestion for strategies as to the minimum memory
08:21:55# that they will use for calculating JVM settings (MB).
08:21:55omero.jvmcfg.min_system_memory=3414
08:21:5508:21:55## (For documentation only)
08:21:55# Suggestion for strategies as to the maximum memory
08:21:55# that they will use for calculating JVM settings (MB).
08:21:55omero.jvmcfg.max_system_memory=48000
08:21:5508:21:5508:21:55#############################################
08:21:55## Logging properties
08:21:55##
08:21:55## Note: changes to the default omero.logging values in
08:21:55## this file will *not* be reflected in OMERO.server
08:21:55## since they are defined in OMERO.py
08:21:55#############################################
08:21:5508:21:55## (For documentation only)
08:21:55# Relative server directory where the log files should be stored.
08:21:55omero.logging.directory=var/log/
08:21:5508:21:55## (For documentation only)
08:21:55# Whether the server log files should be rotated at a certain time
08:21:55# interval. If true, log files will be rolled over at midnight.
08:21:55# Otherwise, log files will be rolled over at a predetermined size,
08:21:55# see omero.logging.logsize for more information.
08:21:55omero.logging.timedlog=false
08:21:5508:21:55## (For documentation only)
08:21:55# If omero.logging.timedlog is false or unset, specifies the
08:21:55# maximum size of the server log files in bytes above which a
08:21:55# new log file should be created.
08:21:55omero.logging.logsize=5000000
08:21:5508:21:55## (For documentation only)
08:21:55# If omero.logging.timedlog is false or unset, specifies the
08:21:55# number of old server log files that should be kept. Old log
08:21:55# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
08:21:55omero.logging.lognum=9
08:21:5508:21:55## (For documentation only)
08:21:55# Specifies the threshold for the Python servers log files. Logging messages
08:21:55# which are less severe than this value will be ignored. For a list of
08:21:55# available values, see https://docs.python.org/3/library/logging.html#levels.
08:21:55omero.logging.level=20
08:21:5508:21:55#############################################
08:21:55## Ice overrides
08:21:55##
08:21:55## Though not used directly by OMERO, a number
08:21:55## of properties prefixed with "Ice.*" will
08:21:55## alter the behavior of the OMERO runtime
08:21:55## by configuring the Ice communicators. For a
08:21:55## full listing see:
08:21:55##
08:21:55## http://doc.zeroc.com/display/Ice/Property+Reference08:21:55## For more information see
08:21:55## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start08:21:55#############################################
08:21:5508:21:55# Disable IPv6 by setting to 0. Only needed in
08:21:55# certain situations.
08:21:55Ice.IPv6=1
08:21:5508:21:55# Glacier2Template IceSSL defaults and overrides,
08:21:55# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
08:21:55# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
08:21:55# update the corresponding IceSSL. property.
08:21:55omero.glacier2.IceSSL=
08:21:5508:21:55# Glacier2Template SSL maximum allowed protocol (mac bug)
08:21:55omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
08:21:55# Glacier2Template SSL allowed cipher suites
08:21:55omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
08:21:55# Glacier2Template SSL verification requirements
08:21:55omero.glacier2.IceSSL.VerifyPeer=0
08:21:55# Glacier2Template SSL allowed protocols
08:21:55omero.glacier2.IceSSL.Protocols=tls1
08:21:5508:21:55# Override the default set of OMERO services.
08:21:55# For example, to run OMERO.server with Blitz and Tables only
08:21:55# (i.e. disable Processor, DropBox, Indexer, PixelData)
08:21:55# set this to ``master:Blitz-0,Tables-0``.
08:21:55# Also use this to distribute OMERO services across multiple nodes,
08:21:55# for example:
08:21:55# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
08:21:55# See
08:21:55# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples08:21:55omero.server.nodedescriptors=
08:21:5508:21:55#############################################
08:21:55## Darwin (OS X) specific defaults for templated configuration files only.
08:21:55## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
08:21:55## file.
08:21:55## Do not set these properties in ``omero config``, instead set the original
08:21:55## ``xxx.yyy`` property
08:21:55#############################################
08:21:55_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
08:21:5508:21:55## (For documentation only)
08:21:55# Name of the Python module to use when starting the Tables service
08:21:55omero.tables.module=runTables
08:21:5508:21:55#############################################
08:21:55## Server product name for release artifacts
08:21:55#############################################
08:21:55product.name=OMERO.server
08:21:5508:21:55#############################################
08:21:55### Properties below this marker are ignored by
08:21:55### omero.install.config_parser.PropertyParser
08:21:55### END
08:21:5508:21:55#############################################
08:21:55## Library versions
08:21:55#############################################
08:21:55##
08:21:55versions.findbugs=1.2.1
08:21:55versions.ice36=3.6.5
08:21:55versions.ice36_lib=36
08:21:55## internal
08:21:55versions.omeroshares36=3.6.3
08:21:55versions.omeromock36=3.6.3
08:21:55versions.icedb36=3.6.3
08:21:55versions.ipython=1.2.1
08:21:5508:21:55versions.janino=2.5.10
08:21:5508:21:55versions.reportng=1.1.1
08:21:5508:21:55versions.testng=7.5
08:21:55versions.velocity=1.4
08:21:5508:21:55versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE08:21:55versions.omero-scripts-url=${versions.omero-pypi}
08:21:5508:21:55###
08:21:55### Appended Values
08:21:55###
08:21:5508:21:55## Internal dependencies'
08:21:55+ echo '##
08:21:55## omero.properties
08:21:55## ----------------
08:21:55##
08:21:55## DO NOT EDIT!
08:21:55##
08:21:55##
08:21:55## Any of these properties can be altered by using `omero config`. MODIFYING
08:21:55## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
08:21:55## at compile time!
08:21:55##
08:21:55## For an overview of these properties, see
08:21:55## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html08:21:55##
08:21:55## Properties marked with "DEVELOPMENT" should not be used in production.
08:21:5508:21:55# Comma separated list of Ice transports available to clients. The default
08:21:55# value ("ssl,tcp") instructs Ice to open the ports specified by the
08:21:55# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
08:21:55# will prevent all non-encrypted connections to the OMERO server.
08:21:55#
08:21:55# Additionally, there are two experimental values for using websockets:
08:21:55# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
08:21:55# that are opened are controlled by the omero.ports.ws and omero.ports.wss
08:21:55# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
08:21:55#
08:21:55# Note: When using websockets behind a web server like nginx, additional
08:21:55# configuration may be needed.
08:21:55omero.client.icetransports=ssl,tcp
08:21:5508:21:55# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
08:21:55# server
08:21:55omero.ports.prefix=
08:21:5508:21:55# The Glacier2 SSL port number to use
08:21:55omero.ports.ssl=4064
08:21:5508:21:55# The Glacier2 TCP port number to use (unencrypted)
08:21:55omero.ports.tcp=4063
08:21:5508:21:55# The Glacier2 WSS port number to use
08:21:55omero.ports.wss=4066
08:21:5508:21:55# The Glacier2 WS port number to use (unencrypted)
08:21:55omero.ports.ws=4065
08:21:5508:21:55# The IceGrid registry port number to use
08:21:55omero.ports.registry=4061
08:21:5508:21:55#############################################
08:21:55## JVM configuration
08:21:55##
08:21:55## Note: changes to the omero.jvmcfg properties
08:21:55## will *not* be reflected in OMERO.server
08:21:55## since they are defined in OMERO.py.
08:21:55#############################################
08:21:55## (For documentation only)
08:21:55# Memory strategy which will be used by default.
08:21:55# Options include: percent, manual
08:21:55omero.jvmcfg.strategy=percent
08:21:5508:21:55## (For documentation only)
08:21:55# Explicit value for the `-Xmx` argument, e.g.
08:21:55# "1g"
08:21:55omero.jvmcfg.heap_size=
08:21:5508:21:55## (For documentation only)
08:21:55# Explicit value for the MaxPermSize argument
08:21:55# to the JVM, e.g. "500M". Ignored for Java8+
08:21:55omero.jvmcfg.perm_gen=
08:21:5508:21:55## (For documentation only)
08:21:55# Toggles on or off heap dumps on OOMs. Default is "off".
08:21:55# The special value "tmp" will create the heap dumps in
08:21:55# your temp directory.
08:21:55omero.jvmcfg.heap_dump=
08:21:5508:21:55## (For documentation only)
08:21:55# Used only by the percent strategy. An integer between 0
08:21:55# and 100 which is the percent of active memory that will
08:21:55# be used by the service.
08:21:55omero.jvmcfg.percent=
08:21:5508:21:55## (For documentation only)
08:21:55# Contains other parameters which should be passed to the
08:21:55# JVM. The value of "append" is treated as if it were on
08:21:55# the command line so will be separated on whitespace.
08:21:55# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
08:21:55# results in two new arguments.
08:21:55# Note that when using `config set` from the command line
08:21:55# one may need to give a prior `--` option to prevent a value
08:21:55# starting with `-` from already being parsed as an option,
08:21:55# and values may need quoting to prevent whitespace or other
08:21:55# significant characters from being interpreted prematurely.
08:21:5508:21:55omero.jvmcfg.append=
08:21:5508:21:55## (For documentation only)
08:21:55# Manual override of the total system memory that
08:21:55# OMERO will *think* is present on the local OS (MB).
08:21:55# If unset, an attempt will be made to detect the actual
08:21:55# amount: first by using the Python library `psutil` and
08:21:55# if that is not installed, by running a Java tool. If
08:21:55# neither works, 4.0GB is assumed.
08:21:55omero.jvmcfg.system_memory=
08:21:5508:21:55## (For documentation only)
08:21:55# Suggestion for strategies as to the minimum memory
08:21:55# that they will use for calculating JVM settings (MB).
08:21:55omero.jvmcfg.min_system_memory=3414
08:21:5508:21:55## (For documentation only)
08:21:55# Suggestion for strategies as to the maximum memory
08:21:55# that they will use for calculating JVM settings (MB).
08:21:55omero.jvmcfg.max_system_memory=48000
08:21:5508:21:5508:21:55#############################################
08:21:55## Logging properties
08:21:55##
08:21:55## Note: changes to the default omero.logging values in
08:21:55## this file will *not* be reflected in OMERO.server
08:21:55## since they are defined in OMERO.py
08:21:55#############################################
08:21:5508:21:55## (For documentation only)
08:21:55# Relative server directory where the log files should be stored.
08:21:55omero.logging.directory=var/log/
08:21:5508:21:55## (For documentation only)
08:21:55# Whether the server log files should be rotated at a certain time
08:21:55# interval. If true, log files will be rolled over at midnight.
08:21:55# Otherwise, log files will be rolled over at a predetermined size,
08:21:55# see omero.logging.logsize for more information.
08:21:55omero.logging.timedlog=false
08:21:5508:21:55## (For documentation only)
08:21:55# If omero.logging.timedlog is false or unset, specifies the
08:21:55# maximum size of the server log files in bytes above which a
08:21:55# new log file should be created.
08:21:55omero.logging.logsize=5000000
08:21:5508:21:55## (For documentation only)
08:21:55# If omero.logging.timedlog is false or unset, specifies the
08:21:55# number of old server log files that should be kept. Old log
08:21:55# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
08:21:55omero.logging.lognum=9
08:21:5508:21:55## (For documentation only)
08:21:55# Specifies the threshold for the Python servers log files. Logging messages
08:21:55# which are less severe than this value will be ignored. For a list of
08:21:55# available values, see https://docs.python.org/3/library/logging.html#levels.
08:21:55omero.logging.level=20
08:21:5508:21:55#############################################
08:21:55## Ice overrides
08:21:55##
08:21:55## Though not used directly by OMERO, a number
08:21:55## of properties prefixed with "Ice.*" will
08:21:55## alter the behavior of the OMERO runtime
08:21:55## by configuring the Ice communicators. For a
08:21:55## full listing see:
08:21:55##
08:21:55## http://doc.zeroc.com/display/Ice/Property+Reference08:21:55## For more information see
08:21:55## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start08:21:55#############################################
08:21:5508:21:55# Disable IPv6 by setting to 0. Only needed in
08:21:55# certain situations.
08:21:55Ice.IPv6=1
08:21:5508:21:55# Glacier2Template IceSSL defaults and overrides,
08:21:55# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
08:21:55# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
08:21:55# update the corresponding IceSSL. property.
08:21:55omero.glacier2.IceSSL=
08:21:5508:21:55# Glacier2Template SSL maximum allowed protocol (mac bug)
08:21:55omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
08:21:55# Glacier2Template SSL allowed cipher suites
08:21:55omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
08:21:55# Glacier2Template SSL verification requirements
08:21:55omero.glacier2.IceSSL.VerifyPeer=0
08:21:55# Glacier2Template SSL allowed protocols
08:21:55omero.glacier2.IceSSL.Protocols=tls1
08:21:5508:21:55# Override the default set of OMERO services.
08:21:55# For example, to run OMERO.server with Blitz and Tables only
08:21:55# (i.e. disable Processor, DropBox, Indexer, PixelData)
08:21:55# set this to ``master:Blitz-0,Tables-0``.
08:21:55# Also use this to distribute OMERO services across multiple nodes,
08:21:55# for example:
08:21:55# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
08:21:55# See
08:21:55# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples08:21:55omero.server.nodedescriptors=
08:21:5508:21:55#############################################
08:21:55## Darwin (OS X) specific defaults for templated configuration files only.
08:21:55## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
08:21:55## file.
08:21:55## Do not set these properties in ``omero config``, instead set the original
08:21:55## ``xxx.yyy`` property
08:21:55#############################################
08:21:55_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
08:21:5508:21:55## (For documentation only)
08:21:55# Name of the Python module to use when starting the Tables service
08:21:55omero.tables.module=runTables
08:21:5508:21:55#############################################
08:21:55## Server product name for release artifacts
08:21:55#############################################
08:21:55product.name=OMERO.server
08:21:5508:21:55#############################################
08:21:55### Properties below this marker are ignored by
08:21:55### omero.install.config_parser.PropertyParser
08:21:55### END
08:21:5508:21:55#############################################
08:21:55## Library versions
08:21:55#############################################
08:21:55##
08:21:55versions.findbugs=1.2.1
08:21:55versions.ice36=3.6.5
08:21:55versions.ice36_lib=36
08:21:55## internal
08:21:55versions.omeroshares36=3.6.3
08:21:55versions.omeromock36=3.6.3
08:21:55versions.icedb36=3.6.3
08:21:55versions.ipython=1.2.1
08:21:5508:21:55versions.janino=2.5.10
08:21:5508:21:55versions.reportng=1.1.1
08:21:5508:21:55versions.testng=7.5
08:21:55versions.velocity=1.4
08:21:5508:21:55versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE08:21:55versions.omero-scripts-url=${versions.omero-pypi}
08:21:5508:21:55###
08:21:55### Appended Values
08:21:55###
08:21:5508:21:55## Internal dependencies'
08:21:55+ echo versions.omero-pypi=https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/08:21:55+ echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive08:21:55+ echo versions.scripts-prefix=
08:21:55+ echo versions.scripts=merge_ci
08:21:55+ cat /home/omero/workspace/OMERO-push/version.properties
08:21:55+ git commit -a -m 'Add version.properties to etc/omero.properties'
08:21:55[detached HEAD 0d4d6a64dd] Add version.properties to etc/omero.properties
08:21:55 1 file changed, 46 insertions(+), 7 deletions(-)
08:21:55+ git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci
08:21:56To github.com:snoopycrimecop/openmicroscopy.git
08:21:56 + f11ef0093a...0d4d6a64dd HEAD -> merge_ci (forced update)
08:21:56Finished: SUCCESS
![[Jenkins]](/jenkins/static/f8f0d1dd/images/svgs/logo.svg){kind=logo}
