07:33:52Started by user devspace07:33:52Running as SYSTEM
07:33:52Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push
07:33:52The recommended git tool is: NONE
07:33:52No credentials specified
07:33:52 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10
07:33:52Fetching changes from the remote Git repository
07:33:52 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10
07:33:52Fetching upstream changes from https://github.com/ome/openmicroscopy.git07:33:52 > git --version # timeout=10
07:33:52 > git --version # 'git version 2.43.5'
07:33:52 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
07:33:56 > git rev-parse origin/develop^{commit} # timeout=10
07:33:56Checking out Revision 09f7a5b966ca542f4c884d081ea3c3dbe5369f7f (origin/develop)
07:33:56 > git config core.sparsecheckout # timeout=10
07:33:56 > git checkout -f 09f7a5b966ca542f4c884d081ea3c3dbe5369f7f # timeout=30
07:33:57Commit message: "Merge pull request #6417 from ome/create-pull-request/patch"
07:33:57 > git rev-list --no-walk 09f7a5b966ca542f4c884d081ea3c3dbe5369f7f # timeout=10
07:33:57Cleaning workspace
07:33:57 > git rev-parse --verify HEAD # timeout=10
07:33:57Resetting working tree
07:33:57 > git reset --hard # timeout=10
07:33:57 > git clean -fdx # timeout=10
07:33:57Copied 1 artifact from "OMERO-python-superbuild-build" build number 35107:33:57[OMERO-push] $ /bin/bash -xe /tmp/jenkins14744401601984358876.sh
07:33:57+ python3.11 -mvenv venv
07:34:01+ source /home/omero/workspace/OMERO-push/venv/bin/activate
07:34:01++ deactivate nondestructive
07:34:01++ '[' -n '' ']'
07:34:01++ '[' -n '' ']'
07:34:01++ hash -r
07:34:01++ '[' -n '' ']'
07:34:01++ unset VIRTUAL_ENV
07:34:01++ unset VIRTUAL_ENV_PROMPT
07:34:01++ '[' '!' nondestructive = nondestructive ']'
07:34:01++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv
07:34:01++ export VIRTUAL_ENV
07:34:01++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
07:34:01++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
07:34:01++ export PATH
07:34:01++ '[' -n '' ']'
07:34:01++ '[' -z '' ']'
07:34:01++ _OLD_VIRTUAL_PS1=
07:34:01++ PS1='(venv) '
07:34:01++ export PS1
07:34:01++ VIRTUAL_ENV_PROMPT='(venv) '
07:34:01++ export VIRTUAL_ENV_PROMPT
07:34:01++ hash -r
07:34:01+ pip install -U pip
07:34:02Requirement already satisfied: pip in ./venv/lib64/python3.11/site-packages (22.3.1)
07:34:02Collecting pip
07:34:02 Using cached pip-25.0.1-py3-none-any.whl (1.8 MB)
07:34:02Installing collected packages: pip
07:34:02 Attempting uninstall: pip
07:34:02 Found existing installation: pip 22.3.1
07:34:02 Uninstalling pip-22.3.1:
07:34:02 Successfully uninstalled pip-22.3.1
07:34:05Successfully installed pip-25.0.1
07:34:05WARNING: There was an error checking the latest version of pip.
07:34:05+ pip install -U scc
07:34:06Collecting scc
07:34:06 Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB)
07:34:06Collecting PyGithub>=1.54 (from scc)
07:34:06 Using cached PyGithub-2.6.1-py3-none-any.whl.metadata (3.9 kB)
07:34:06Collecting PyYAML>=5.1 (from scc)
07:34:06 Downloading PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
07:34:06Collecting future (from scc)
07:34:06 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
07:34:06Collecting ruamel.yaml (from scc)
07:34:06 Using cached ruamel.yaml-0.18.10-py3-none-any.whl.metadata (23 kB)
07:34:06Collecting ruamel.yaml.jinja2 (from scc)
07:34:06 Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB)
07:34:06Collecting six (from scc)
07:34:06 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
07:34:06Collecting urllib3<2 (from scc)
07:34:06 Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB)
07:34:06Collecting yaclifw<0.3,>=0.2.0 (from scc)
07:34:06 Using cached yaclifw-0.2.0.tar.gz (13 kB)
07:34:07 Installing build dependencies: started
07:34:08 Installing build dependencies: finished with status 'done'
07:34:08 Getting requirements to build wheel: started
07:34:09 Getting requirements to build wheel: finished with status 'done'
07:34:09 Preparing metadata (pyproject.toml): started
07:34:09 Preparing metadata (pyproject.toml): finished with status 'done'
07:34:09Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc)
07:34:09 Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl.metadata (8.6 kB)
07:34:09Collecting requests>=2.14.0 (from PyGithub>=1.54->scc)
07:34:09 Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB)
07:34:09Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
07:34:09 Using cached PyJWT-2.10.1-py3-none-any.whl.metadata (4.0 kB)
07:34:09Collecting typing-extensions>=4.0.0 (from PyGithub>=1.54->scc)
07:34:09 Using cached typing_extensions-4.13.0-py3-none-any.whl.metadata (3.0 kB)
07:34:09Collecting Deprecated (from PyGithub>=1.54->scc)
07:34:09 Using cached Deprecated-1.2.18-py2.py3-none-any.whl.metadata (5.7 kB)
07:34:09Collecting ruamel.yaml.clib>=0.2.7 (from ruamel.yaml->scc)
07:34:09 Downloading ruamel.yaml.clib-0.2.12-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.7 kB)
07:34:09Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
07:34:09 Using cached cryptography-44.0.2-cp39-abi3-manylinux_2_34_x86_64.whl.metadata (5.7 kB)
07:34:09Collecting cffi>=1.4.1 (from pynacl>=1.4.0->PyGithub>=1.54->scc)
07:34:09 Downloading cffi-1.17.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (1.5 kB)
07:34:09Collecting charset-normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc)
07:34:09 Downloading charset_normalizer-3.4.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (35 kB)
07:34:09Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc)
07:34:09 Using cached idna-3.10-py3-none-any.whl.metadata (10 kB)
07:34:09Collecting certifi>=2017.4.17 (from requests>=2.14.0->PyGithub>=1.54->scc)
07:34:09 Using cached certifi-2025.1.31-py3-none-any.whl.metadata (2.5 kB)
07:34:10Collecting wrapt<2,>=1.10 (from Deprecated->PyGithub>=1.54->scc)
07:34:10 Downloading wrapt-1.17.2-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.4 kB)
07:34:10Collecting pycparser (from cffi>=1.4.1->pynacl>=1.4.0->PyGithub>=1.54->scc)
07:34:10 Using cached pycparser-2.22-py3-none-any.whl.metadata (943 bytes)
07:34:10Using cached scc-0.20.0-py3-none-any.whl (48 kB)
07:34:10Using cached PyGithub-2.6.1-py3-none-any.whl (410 kB)
07:34:10Downloading PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB)
07:34:10 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 763.0/763.0 kB 19.1 MB/s eta 0:00:00
07:34:10Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
07:34:10Using cached future-1.0.0-py3-none-any.whl (491 kB)
07:34:10Using cached ruamel.yaml-0.18.10-py3-none-any.whl (117 kB)
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07:34:10Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
07:34:10Using cached PyJWT-2.10.1-py3-none-any.whl (22 kB)
07:34:10Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (856 kB)
07:34:10Using cached requests-2.32.3-py3-none-any.whl (64 kB)
07:34:10Downloading ruamel.yaml.clib-0.2.12-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (739 kB)
07:34:10 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 739.1/739.1 kB 24.3 MB/s eta 0:00:00
07:34:10Using cached typing_extensions-4.13.0-py3-none-any.whl (45 kB)
07:34:10Using cached Deprecated-1.2.18-py2.py3-none-any.whl (10.0 kB)
07:34:10Using cached certifi-2025.1.31-py3-none-any.whl (166 kB)
07:34:10Downloading cffi-1.17.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (467 kB)
07:34:10Downloading charset_normalizer-3.4.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (143 kB)
07:34:10Using cached cryptography-44.0.2-cp39-abi3-manylinux_2_34_x86_64.whl (4.2 MB)
07:34:10Using cached idna-3.10-py3-none-any.whl (70 kB)
07:34:10Downloading wrapt-1.17.2-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (83 kB)
07:34:10Using cached pycparser-2.22-py3-none-any.whl (117 kB)
07:34:10Building wheels for collected packages: yaclifw
07:34:10 Building wheel for yaclifw (pyproject.toml): started
07:34:10 Building wheel for yaclifw (pyproject.toml): finished with status 'done'
07:34:10 Created wheel for yaclifw: filename=yaclifw-0.2.0-py3-none-any.whl size=14689 sha256=e3813d4eda430cd287a30917f026e81089eff0ceeece11d8ebc081e375ba32ec
07:34:10 Stored in directory: /home/omero/.cache/pip/wheels/65/14/90/3ee93d92964646dc1f6990630191b41765be2582811bce72ac
07:34:10Successfully built yaclifw
07:34:10Installing collected packages: wrapt, urllib3, typing-extensions, six, ruamel.yaml.clib, PyYAML, pyjwt, pycparser, idna, future, charset-normalizer, certifi, yaclifw, ruamel.yaml, requests, Deprecated, cffi, ruamel.yaml.jinja2, pynacl, cryptography, PyGithub, scc
07:34:12Successfully installed Deprecated-1.2.18 PyGithub-2.6.1 PyYAML-6.0.2 certifi-2025.1.31 cffi-1.17.1 charset-normalizer-3.4.1 cryptography-44.0.2 future-1.0.0 idna-3.10 pycparser-2.22 pyjwt-2.10.1 pynacl-1.5.0 requests-2.32.3 ruamel.yaml-0.18.10 ruamel.yaml.clib-0.2.12 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.17.0 typing-extensions-4.13.0 urllib3-1.26.20 wrapt-1.17.2 yaclifw-0.2.0
07:34:12+ test -e src
07:34:12+ cd src
07:34:12++ git config github.user
07:34:12+ user=snoopycrimecop
07:34:12+ scc merge develop --no-ask --reset --shallow -S success-only
07:34:162025-03-28 07:34:16,701 [ scc.merge] INFO Merging Pull Request(s) based on develop
07:34:162025-03-28 07:34:16,701 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
07:34:162025-03-28 07:34:16,701 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
07:34:162025-03-28 07:34:16,701 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
07:34:162025-03-28 07:34:16,701 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
07:34:162025-03-28 07:34:16,701 [ scc.merge] INFO Excluding Pull Request(s) without successful status
07:34:372025-03-28 07:34:37,516 [ scc.merge] INFO Repository: ome/openmicroscopy
07:34:372025-03-28 07:34:37,516 [ scc.merge] INFO Excluded PRs:
07:34:372025-03-28 07:34:37,516 [ scc.merge] INFO - PR 6422 snoopycrimecop 'update dependencies' (status: failure)
07:34:372025-03-28 07:34:37,516 [ scc.merge] INFO - PR 6319 dominikl 'Add integration test for joining session' (exclude comment)
07:34:372025-03-28 07:34:37,516 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment)
07:34:372025-03-28 07:34:37,516 [ scc.merge] INFO - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (label: exclude)
07:34:372025-03-28 07:34:37,516 [ scc.merge] INFO Already up to date.
07:34:372025-03-28 07:34:37,516 [ scc.merge] INFO
07:34:372025-03-28 07:34:37,516 [ scc.merge] INFO Merged PRs:
07:34:372025-03-28 07:34:37,516 [ scc.merge] INFO - PR 6309 jburel 'add try block'
07:34:372025-03-28 07:34:37,516 [ scc.merge] INFO - PR 6353 jburel 'remove dependencies'
07:34:372025-03-28 07:34:37,516 [ scc.merge] INFO - PR 6423 jburel 'Use \d'
07:34:372025-03-28 07:34:37,516 [ scc.merge] INFO - PR 6424 dominikl 'Add changelog for 5.6.15 release'
07:34:372025-03-28 07:34:37,516 [ scc.merge] INFO
07:34:37+ cp etc/omero.properties etc/omero.properties.bak
07:34:37+ rm etc/omero.properties
07:34:37+ touch etc/omero.properties
07:34:37++ sed -n '/Internal dependencies/=' etc/omero.properties.bak
07:34:37+ ne=249
07:34:37++ sed -n 1,249p etc/omero.properties.bak
07:34:37+ line='##
07:34:37## omero.properties
07:34:37## ----------------
07:34:37##
07:34:37## DO NOT EDIT!
07:34:37##
07:34:37##
07:34:37## Any of these properties can be altered by using `omero config`. MODIFYING
07:34:37## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
07:34:37## at compile time!
07:34:37##
07:34:37## For an overview of these properties, see
07:34:37## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html07:34:37##
07:34:37## Properties marked with "DEVELOPMENT" should not be used in production.
07:34:3707:34:37# Comma separated list of Ice transports available to clients. The default
07:34:37# value ("ssl,tcp") instructs Ice to open the ports specified by the
07:34:37# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
07:34:37# will prevent all non-encrypted connections to the OMERO server.
07:34:37#
07:34:37# Additionally, there are two experimental values for using websockets:
07:34:37# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
07:34:37# that are opened are controlled by the omero.ports.ws and omero.ports.wss
07:34:37# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
07:34:37#
07:34:37# Note: When using websockets behind a web server like nginx, additional
07:34:37# configuration may be needed.
07:34:37omero.client.icetransports=ssl,tcp
07:34:3707:34:37# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
07:34:37# server
07:34:37omero.ports.prefix=
07:34:3707:34:37# The Glacier2 SSL port number to use
07:34:37omero.ports.ssl=4064
07:34:3707:34:37# The Glacier2 TCP port number to use (unencrypted)
07:34:37omero.ports.tcp=4063
07:34:3707:34:37# The Glacier2 WSS port number to use
07:34:37omero.ports.wss=4066
07:34:3707:34:37# The Glacier2 WS port number to use (unencrypted)
07:34:37omero.ports.ws=4065
07:34:3707:34:37# The IceGrid registry port number to use
07:34:37omero.ports.registry=4061
07:34:3707:34:37#############################################
07:34:37## JVM configuration
07:34:37##
07:34:37## Note: changes to the omero.jvmcfg properties
07:34:37## will *not* be reflected in OMERO.server
07:34:37## since they are defined in OMERO.py.
07:34:37#############################################
07:34:37## (For documentation only)
07:34:37# Memory strategy which will be used by default.
07:34:37# Options include: percent, manual
07:34:37omero.jvmcfg.strategy=percent
07:34:3707:34:37## (For documentation only)
07:34:37# Explicit value for the `-Xmx` argument, e.g.
07:34:37# "1g"
07:34:37omero.jvmcfg.heap_size=
07:34:3707:34:37## (For documentation only)
07:34:37# Explicit value for the MaxPermSize argument
07:34:37# to the JVM, e.g. "500M". Ignored for Java8+
07:34:37omero.jvmcfg.perm_gen=
07:34:3707:34:37## (For documentation only)
07:34:37# Toggles on or off heap dumps on OOMs. Default is "off".
07:34:37# The special value "tmp" will create the heap dumps in
07:34:37# your temp directory.
07:34:37omero.jvmcfg.heap_dump=
07:34:3707:34:37## (For documentation only)
07:34:37# Used only by the percent strategy. An integer between 0
07:34:37# and 100 which is the percent of active memory that will
07:34:37# be used by the service.
07:34:37omero.jvmcfg.percent=
07:34:3707:34:37## (For documentation only)
07:34:37# Contains other parameters which should be passed to the
07:34:37# JVM. The value of "append" is treated as if it were on
07:34:37# the command line so will be separated on whitespace.
07:34:37# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
07:34:37# results in two new arguments.
07:34:37# Note that when using `config set` from the command line
07:34:37# one may need to give a prior `--` option to prevent a value
07:34:37# starting with `-` from already being parsed as an option,
07:34:37# and values may need quoting to prevent whitespace or other
07:34:37# significant characters from being interpreted prematurely.
07:34:3707:34:37omero.jvmcfg.append=
07:34:3707:34:37## (For documentation only)
07:34:37# Manual override of the total system memory that
07:34:37# OMERO will *think* is present on the local OS (MB).
07:34:37# If unset, an attempt will be made to detect the actual
07:34:37# amount: first by using the Python library `psutil` and
07:34:37# if that is not installed, by running a Java tool. If
07:34:37# neither works, 4.0GB is assumed.
07:34:37omero.jvmcfg.system_memory=
07:34:3707:34:37## (For documentation only)
07:34:37# Suggestion for strategies as to the minimum memory
07:34:37# that they will use for calculating JVM settings (MB).
07:34:37omero.jvmcfg.min_system_memory=3414
07:34:3707:34:37## (For documentation only)
07:34:37# Suggestion for strategies as to the maximum memory
07:34:37# that they will use for calculating JVM settings (MB).
07:34:37omero.jvmcfg.max_system_memory=48000
07:34:3707:34:3707:34:37#############################################
07:34:37## Logging properties
07:34:37##
07:34:37## Note: changes to the default omero.logging values in
07:34:37## this file will *not* be reflected in OMERO.server
07:34:37## since they are defined in OMERO.py
07:34:37#############################################
07:34:3707:34:37## (For documentation only)
07:34:37# Relative server directory where the log files should be stored.
07:34:37omero.logging.directory=var/log/
07:34:3707:34:37## (For documentation only)
07:34:37# Whether the server log files should be rotated at a certain time
07:34:37# interval. If true, log files will be rolled over at midnight.
07:34:37# Otherwise, log files will be rolled over at a predetermined size,
07:34:37# see omero.logging.logsize for more information.
07:34:37omero.logging.timedlog=false
07:34:3707:34:37## (For documentation only)
07:34:37# If omero.logging.timedlog is false or unset, specifies the
07:34:37# maximum size of the server log files in bytes above which a
07:34:37# new log file should be created.
07:34:37omero.logging.logsize=5000000
07:34:3707:34:37## (For documentation only)
07:34:37# If omero.logging.timedlog is false or unset, specifies the
07:34:37# number of old server log files that should be kept. Old log
07:34:37# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
07:34:37omero.logging.lognum=9
07:34:3707:34:37## (For documentation only)
07:34:37# Specifies the threshold for the Python servers log files. Logging messages
07:34:37# which are less severe than this value will be ignored. For a list of
07:34:37# available values, see https://docs.python.org/3/library/logging.html#levels.
07:34:37omero.logging.level=20
07:34:3707:34:37#############################################
07:34:37## Ice overrides
07:34:37##
07:34:37## Though not used directly by OMERO, a number
07:34:37## of properties prefixed with "Ice.*" will
07:34:37## alter the behavior of the OMERO runtime
07:34:37## by configuring the Ice communicators. For a
07:34:37## full listing see:
07:34:37##
07:34:37## http://doc.zeroc.com/display/Ice/Property+Reference07:34:37## For more information see
07:34:37## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start07:34:37#############################################
07:34:3707:34:37# Disable IPv6 by setting to 0. Only needed in
07:34:37# certain situations.
07:34:37Ice.IPv6=1
07:34:3707:34:37# Glacier2Template IceSSL defaults and overrides,
07:34:37# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
07:34:37# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
07:34:37# update the corresponding IceSSL. property.
07:34:37omero.glacier2.IceSSL=
07:34:3707:34:37# Glacier2Template SSL maximum allowed protocol (mac bug)
07:34:37omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
07:34:37# Glacier2Template SSL allowed cipher suites
07:34:37omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
07:34:37# Glacier2Template SSL verification requirements
07:34:37omero.glacier2.IceSSL.VerifyPeer=0
07:34:37# Glacier2Template SSL allowed protocols
07:34:37omero.glacier2.IceSSL.Protocols=tls1
07:34:3707:34:37# Override the default set of OMERO services.
07:34:37# For example, to run OMERO.server with Blitz and Tables only
07:34:37# (i.e. disable Processor, DropBox, Indexer, PixelData)
07:34:37# set this to ``master:Blitz-0,Tables-0``.
07:34:37# Also use this to distribute OMERO services across multiple nodes,
07:34:37# for example:
07:34:37# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
07:34:37# See
07:34:37# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples07:34:37omero.server.nodedescriptors=
07:34:3707:34:37#############################################
07:34:37## Darwin (OS X) specific defaults for templated configuration files only.
07:34:37## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
07:34:37## file.
07:34:37## Do not set these properties in ``omero config``, instead set the original
07:34:37## ``xxx.yyy`` property
07:34:37#############################################
07:34:37_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
07:34:3707:34:37## (For documentation only)
07:34:37# Name of the Python module to use when starting the Tables service
07:34:37omero.tables.module=runTables
07:34:3707:34:37#############################################
07:34:37## Server product name for release artifacts
07:34:37#############################################
07:34:37product.name=OMERO.server
07:34:3707:34:37#############################################
07:34:37### Properties below this marker are ignored by
07:34:37### omero.install.config_parser.PropertyParser
07:34:37### END
07:34:3707:34:37#############################################
07:34:37## Library versions
07:34:37#############################################
07:34:37##
07:34:37versions.findbugs=1.2.1
07:34:37versions.ice36=3.6.5
07:34:37versions.ice36_lib=36
07:34:37## internal
07:34:37versions.omeroshares36=3.6.3
07:34:37versions.omeromock36=3.6.3
07:34:37versions.icedb36=3.6.3
07:34:37versions.ipython=1.2.1
07:34:3707:34:37versions.janino=2.5.10
07:34:3707:34:37versions.reportng=1.1.1
07:34:3707:34:37versions.testng=7.5
07:34:37versions.velocity=1.4
07:34:3707:34:37versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE07:34:37versions.omero-scripts-url=${versions.omero-pypi}
07:34:3707:34:37###
07:34:37### Appended Values
07:34:37###
07:34:3707:34:37## Internal dependencies'
07:34:37+ echo '##
07:34:37## omero.properties
07:34:37## ----------------
07:34:37##
07:34:37## DO NOT EDIT!
07:34:37##
07:34:37##
07:34:37## Any of these properties can be altered by using `omero config`. MODIFYING
07:34:37## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
07:34:37## at compile time!
07:34:37##
07:34:37## For an overview of these properties, see
07:34:37## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html07:34:37##
07:34:37## Properties marked with "DEVELOPMENT" should not be used in production.
07:34:3707:34:37# Comma separated list of Ice transports available to clients. The default
07:34:37# value ("ssl,tcp") instructs Ice to open the ports specified by the
07:34:37# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
07:34:37# will prevent all non-encrypted connections to the OMERO server.
07:34:37#
07:34:37# Additionally, there are two experimental values for using websockets:
07:34:37# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
07:34:37# that are opened are controlled by the omero.ports.ws and omero.ports.wss
07:34:37# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
07:34:37#
07:34:37# Note: When using websockets behind a web server like nginx, additional
07:34:37# configuration may be needed.
07:34:37omero.client.icetransports=ssl,tcp
07:34:3707:34:37# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
07:34:37# server
07:34:37omero.ports.prefix=
07:34:3707:34:37# The Glacier2 SSL port number to use
07:34:37omero.ports.ssl=4064
07:34:3707:34:37# The Glacier2 TCP port number to use (unencrypted)
07:34:37omero.ports.tcp=4063
07:34:3707:34:37# The Glacier2 WSS port number to use
07:34:37omero.ports.wss=4066
07:34:3707:34:37# The Glacier2 WS port number to use (unencrypted)
07:34:37omero.ports.ws=4065
07:34:3707:34:37# The IceGrid registry port number to use
07:34:37omero.ports.registry=4061
07:34:3707:34:37#############################################
07:34:37## JVM configuration
07:34:37##
07:34:37## Note: changes to the omero.jvmcfg properties
07:34:37## will *not* be reflected in OMERO.server
07:34:37## since they are defined in OMERO.py.
07:34:37#############################################
07:34:37## (For documentation only)
07:34:37# Memory strategy which will be used by default.
07:34:37# Options include: percent, manual
07:34:37omero.jvmcfg.strategy=percent
07:34:3707:34:37## (For documentation only)
07:34:37# Explicit value for the `-Xmx` argument, e.g.
07:34:37# "1g"
07:34:37omero.jvmcfg.heap_size=
07:34:3707:34:37## (For documentation only)
07:34:37# Explicit value for the MaxPermSize argument
07:34:37# to the JVM, e.g. "500M". Ignored for Java8+
07:34:37omero.jvmcfg.perm_gen=
07:34:3707:34:37## (For documentation only)
07:34:37# Toggles on or off heap dumps on OOMs. Default is "off".
07:34:37# The special value "tmp" will create the heap dumps in
07:34:37# your temp directory.
07:34:37omero.jvmcfg.heap_dump=
07:34:3707:34:37## (For documentation only)
07:34:37# Used only by the percent strategy. An integer between 0
07:34:37# and 100 which is the percent of active memory that will
07:34:37# be used by the service.
07:34:37omero.jvmcfg.percent=
07:34:3707:34:37## (For documentation only)
07:34:37# Contains other parameters which should be passed to the
07:34:37# JVM. The value of "append" is treated as if it were on
07:34:37# the command line so will be separated on whitespace.
07:34:37# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
07:34:37# results in two new arguments.
07:34:37# Note that when using `config set` from the command line
07:34:37# one may need to give a prior `--` option to prevent a value
07:34:37# starting with `-` from already being parsed as an option,
07:34:37# and values may need quoting to prevent whitespace or other
07:34:37# significant characters from being interpreted prematurely.
07:34:3707:34:37omero.jvmcfg.append=
07:34:3707:34:37## (For documentation only)
07:34:37# Manual override of the total system memory that
07:34:37# OMERO will *think* is present on the local OS (MB).
07:34:37# If unset, an attempt will be made to detect the actual
07:34:37# amount: first by using the Python library `psutil` and
07:34:37# if that is not installed, by running a Java tool. If
07:34:37# neither works, 4.0GB is assumed.
07:34:37omero.jvmcfg.system_memory=
07:34:3707:34:37## (For documentation only)
07:34:37# Suggestion for strategies as to the minimum memory
07:34:37# that they will use for calculating JVM settings (MB).
07:34:37omero.jvmcfg.min_system_memory=3414
07:34:3707:34:37## (For documentation only)
07:34:37# Suggestion for strategies as to the maximum memory
07:34:37# that they will use for calculating JVM settings (MB).
07:34:37omero.jvmcfg.max_system_memory=48000
07:34:3707:34:3707:34:37#############################################
07:34:37## Logging properties
07:34:37##
07:34:37## Note: changes to the default omero.logging values in
07:34:37## this file will *not* be reflected in OMERO.server
07:34:37## since they are defined in OMERO.py
07:34:37#############################################
07:34:3707:34:37## (For documentation only)
07:34:37# Relative server directory where the log files should be stored.
07:34:37omero.logging.directory=var/log/
07:34:3707:34:37## (For documentation only)
07:34:37# Whether the server log files should be rotated at a certain time
07:34:37# interval. If true, log files will be rolled over at midnight.
07:34:37# Otherwise, log files will be rolled over at a predetermined size,
07:34:37# see omero.logging.logsize for more information.
07:34:37omero.logging.timedlog=false
07:34:3707:34:37## (For documentation only)
07:34:37# If omero.logging.timedlog is false or unset, specifies the
07:34:37# maximum size of the server log files in bytes above which a
07:34:37# new log file should be created.
07:34:37omero.logging.logsize=5000000
07:34:3707:34:37## (For documentation only)
07:34:37# If omero.logging.timedlog is false or unset, specifies the
07:34:37# number of old server log files that should be kept. Old log
07:34:37# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
07:34:37omero.logging.lognum=9
07:34:3707:34:37## (For documentation only)
07:34:37# Specifies the threshold for the Python servers log files. Logging messages
07:34:37# which are less severe than this value will be ignored. For a list of
07:34:37# available values, see https://docs.python.org/3/library/logging.html#levels.
07:34:37omero.logging.level=20
07:34:3707:34:37#############################################
07:34:37## Ice overrides
07:34:37##
07:34:37## Though not used directly by OMERO, a number
07:34:37## of properties prefixed with "Ice.*" will
07:34:37## alter the behavior of the OMERO runtime
07:34:37## by configuring the Ice communicators. For a
07:34:37## full listing see:
07:34:37##
07:34:37## http://doc.zeroc.com/display/Ice/Property+Reference07:34:37## For more information see
07:34:37## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start07:34:37#############################################
07:34:3707:34:37# Disable IPv6 by setting to 0. Only needed in
07:34:37# certain situations.
07:34:37Ice.IPv6=1
07:34:3707:34:37# Glacier2Template IceSSL defaults and overrides,
07:34:37# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
07:34:37# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
07:34:37# update the corresponding IceSSL. property.
07:34:37omero.glacier2.IceSSL=
07:34:3707:34:37# Glacier2Template SSL maximum allowed protocol (mac bug)
07:34:37omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
07:34:37# Glacier2Template SSL allowed cipher suites
07:34:37omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
07:34:37# Glacier2Template SSL verification requirements
07:34:37omero.glacier2.IceSSL.VerifyPeer=0
07:34:37# Glacier2Template SSL allowed protocols
07:34:37omero.glacier2.IceSSL.Protocols=tls1
07:34:3707:34:37# Override the default set of OMERO services.
07:34:37# For example, to run OMERO.server with Blitz and Tables only
07:34:37# (i.e. disable Processor, DropBox, Indexer, PixelData)
07:34:37# set this to ``master:Blitz-0,Tables-0``.
07:34:37# Also use this to distribute OMERO services across multiple nodes,
07:34:37# for example:
07:34:37# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
07:34:37# See
07:34:37# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples07:34:37omero.server.nodedescriptors=
07:34:3707:34:37#############################################
07:34:37## Darwin (OS X) specific defaults for templated configuration files only.
07:34:37## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
07:34:37## file.
07:34:37## Do not set these properties in ``omero config``, instead set the original
07:34:37## ``xxx.yyy`` property
07:34:37#############################################
07:34:37_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
07:34:3707:34:37## (For documentation only)
07:34:37# Name of the Python module to use when starting the Tables service
07:34:37omero.tables.module=runTables
07:34:3707:34:37#############################################
07:34:37## Server product name for release artifacts
07:34:37#############################################
07:34:37product.name=OMERO.server
07:34:3707:34:37#############################################
07:34:37### Properties below this marker are ignored by
07:34:37### omero.install.config_parser.PropertyParser
07:34:37### END
07:34:3707:34:37#############################################
07:34:37## Library versions
07:34:37#############################################
07:34:37##
07:34:37versions.findbugs=1.2.1
07:34:37versions.ice36=3.6.5
07:34:37versions.ice36_lib=36
07:34:37## internal
07:34:37versions.omeroshares36=3.6.3
07:34:37versions.omeromock36=3.6.3
07:34:37versions.icedb36=3.6.3
07:34:37versions.ipython=1.2.1
07:34:3707:34:37versions.janino=2.5.10
07:34:3707:34:37versions.reportng=1.1.1
07:34:3707:34:37versions.testng=7.5
07:34:37versions.velocity=1.4
07:34:3707:34:37versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE07:34:37versions.omero-scripts-url=${versions.omero-pypi}
07:34:3707:34:37###
07:34:37### Appended Values
07:34:37###
07:34:3707:34:37## Internal dependencies'
07:34:37+ echo versions.omero-pypi=https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/07:34:37+ echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive07:34:37+ echo versions.scripts-prefix=
07:34:37+ echo versions.scripts=merge_ci
07:34:37+ cat /home/omero/workspace/OMERO-push/version.properties
07:34:37+ git commit -a -m 'Add version.properties to etc/omero.properties'
07:34:37[detached HEAD 563cb21b2c] Add version.properties to etc/omero.properties
07:34:37 1 file changed, 46 insertions(+), 7 deletions(-)
07:34:37+ git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci
07:34:39To github.com:snoopycrimecop/openmicroscopy.git
07:34:39 + 6aebc5cac8...563cb21b2c HEAD -> merge_ci (forced update)
07:34:39Finished: SUCCESS
![[Jenkins]](/jenkins/static/f8f0d1dd/images/svgs/logo.svg){kind=logo}
