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Installing collected packages: wrapt, urllib3, typing-extensions, six, ruamel.yaml.clib, PyYAML, pyjwt, pycparser, idna, future, charset-normalizer, certifi, yaclifw, ruamel.yaml, requests, Deprecated, cffi, ruamel.yaml.jinja2, pynacl, cryptography, PyGithub, scc
Successfully installed Deprecated-1.2.18 PyGithub-2.6.1 PyYAML-6.0.2 certifi-2025.1.31 cffi-1.17.1 charset-normalizer-3.4.1 cryptography-44.0.2 future-1.0.0 idna-3.10 pycparser-2.22 pyjwt-2.10.1 pynacl-1.5.0 requests-2.32.3 ruamel.yaml-0.18.10 ruamel.yaml.clib-0.2.12 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.17.0 typing-extensions-4.12.2 urllib3-1.26.20 wrapt-1.17.2 yaclifw-0.2.0
[Pipeline] sh (hide)
+ export BASE_REPO=omero-python-superbuild.git
+ BASE_REPO=omero-python-superbuild.git
+ export BASE_BRANCH=master
+ BASE_BRANCH=master
+ export VERSION_LOG=/home/omero/workspace/OMERO-python-superbuild-push/build/version.tsv
+ VERSION_LOG=/home/omero/workspace/OMERO-python-superbuild-push/build/version.tsv
+ . build/venv/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/omero/workspace/OMERO-python-superbuild-push/build/venv
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/home/omero/workspace/OMERO-python-superbuild-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ PS1='(venv) '
++ export PS1
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
+ '[' merge_ci '!=' null ']'
+ export PUSH_BRANCH=merge_ci
+ PUSH_BRANCH=merge_ci
+ '[' null '!=' null ']'
+ export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment'
+ STATUS=success-only
+ MERGE_OPTIONS='-vvv --no-ask --reset --comment'
+ bash build/build-infra-master/recursive-merge
Merge base repository (no submodule updates)
2025-03-26 00:44:18,244 [ scc.config] DEBUG Found github.token
2025-03-26 00:44:18,246 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:18,411 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-03-26 00:44:18,663 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:18,832 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-03-26 00:44:19,084 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:19,228 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2025-03-26 00:44:19,229 [ scc.gh] DEBUG 4627 remaining from 5000 (Reset at 01:03
2025-03-26 00:44:19,230 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2025-03-26 00:44:19,235 [ scc.git] DEBUG Check current status
2025-03-26 00:44:19,235 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2025-03-26 00:44:19,238 [ scc.git] DEBUG 9a566eb Merge pull request #312 from ome/dependabot/submodules/omero-scripts-950b28b
2025-03-26 00:44:19,239 [ scc.git] DEBUG Calling 'git submodule status'
2025-03-26 00:44:19,286 [ scc.git] DEBUG 01fa0c567e5391e5f920bd17d6e9eab210c9df67 omero-dropbox (v5.7.0-7-g01fa0c5)
2025-03-26 00:44:19,486 [ scc.git] DEBUG 6d44f663b2c9680b027c29da4e98430e03403bb1 omero-marshal (v0.9.0-13-g6d44f66)
2025-03-26 00:44:19,880 [ scc.git] DEBUG af8e5b4fe021bfc1173df42fff5d71a90b8fbfc5 omero-py (v5.19.6-12-gaf8e5b4f)
2025-03-26 00:44:19,885 [ scc.git] DEBUG 950b28b31e228ae7b317cbd159235faf4023e4dc omero-scripts (v5.9.0-6-g950b28b)
2025-03-26 00:44:19,889 [ scc.git] DEBUG 4b979f847a45a13ead11e7b39705ec1656376fbc omero-web (v5.29.0-1-g4b979f847)
2025-03-26 00:44:19,893 [ scc.config] DEBUG Found remote.origin.url
2025-03-26 00:44:19,896 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:20,151 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild HTTP/1.1" 200 None
2025-03-26 00:44:20,403 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:20,630 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2025-03-26 00:44:20,882 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:21,072 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2025-03-26 00:44:21,324 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:21,517 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2025-03-26 00:44:21,769 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:21,944 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2025-03-26 00:44:21,945 [ scc.git] DEBUG Resetting...
2025-03-26 00:44:21,945 [ scc.git] DEBUG Calling 'git reset --hard HEAD'
2025-03-26 00:44:21,952 [ scc.git] DEBUG HEAD is now at 9a566eb Merge pull request #312 from ome/dependabot/submodules/omero-scripts-950b28b
2025-03-26 00:44:21,952 [ scc.git] DEBUG Calling 'git submodule update --recursive'
2025-03-26 00:44:22,007 [ scc.git] DEBUG Check current status
2025-03-26 00:44:22,007 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2025-03-26 00:44:22,011 [ scc.git] DEBUG 9a566eb Merge pull request #312 from ome/dependabot/submodules/omero-scripts-950b28b
2025-03-26 00:44:22,011 [ scc.git] DEBUG Calling 'git submodule status'
2025-03-26 00:44:22,052 [ scc.git] DEBUG 01fa0c567e5391e5f920bd17d6e9eab210c9df67 omero-dropbox (v5.7.0-7-g01fa0c5)
2025-03-26 00:44:22,055 [ scc.git] DEBUG 6d44f663b2c9680b027c29da4e98430e03403bb1 omero-marshal (v0.9.0-13-g6d44f66)
2025-03-26 00:44:22,060 [ scc.git] DEBUG af8e5b4fe021bfc1173df42fff5d71a90b8fbfc5 omero-py (v5.19.6-12-gaf8e5b4f)
2025-03-26 00:44:22,065 [ scc.git] DEBUG 950b28b31e228ae7b317cbd159235faf4023e4dc omero-scripts (v5.9.0-6-g950b28b)
2025-03-26 00:44:22,069 [ scc.git] DEBUG 4b979f847a45a13ead11e7b39705ec1656376fbc omero-web (v5.29.0-1-g4b979f847)
2025-03-26 00:44:22,070 [ scc.merge] INFO Merging Pull Request(s) based on master
2025-03-26 00:44:22,070 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
2025-03-26 00:44:22,070 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
2025-03-26 00:44:22,070 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
2025-03-26 00:44:22,070 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
2025-03-26 00:44:22,070 [ scc.repo] DEBUG ## PRs found:
2025-03-26 00:44:22,197 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:22,401 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/pulls HTTP/1.1" 200 2
2025-03-26 00:44:22,402 [ scc.repo] DEBUG ## Branches found:
2025-03-26 00:44:22,402 [ scc.git] DEBUG Get sha1 of %s
2025-03-26 00:44:22,402 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-03-26 00:44:22,406 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-03-26 00:44:22,409 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-03-26 00:44:22,410 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-03-26 00:44:22,414 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-03-26 00:44:22,418 [ scc.git] DEBUG Already up to date.
2025-03-26 00:44:22,418 [ scc.git] DEBUG ## Unique users: []
2025-03-26 00:44:22,418 [ scc.git] DEBUG Get sha1 of %s
2025-03-26 00:44:22,418 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-03-26 00:44:22,421 [ scc.git] DEBUG Calling 'git submodule update'
2025-03-26 00:44:22,463 [ scc.git] DEBUG Get sha1 of %s
2025-03-26 00:44:22,463 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-03-26 00:44:22,467 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-03-26 00:44:22,830 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f9d19286ca0> has no local changes
2025-03-26 00:44:22,830 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone
Repository: ome/omero-python-superbuild
Already up to date.
Generated by OMERO-python-superbuild-push#354 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/354/)'
2025-03-26 00:44:22,859 [ scc.git] DEBUG [detached HEAD 1eb05dd] merge master -Dorg -Snone
2025-03-26 00:44:22,859 [ scc.merge] INFO Repository: ome/omero-python-superbuild
2025-03-26 00:44:22,859 [ scc.merge] INFO Already up to date.
2025-03-26 00:44:22,859 [ scc.merge] INFO
2025-03-26 00:44:22,859 [ scc.merge] INFO
2025-03-26 00:44:22,859 [ scc.merge] DEBUG Cleaning remote branches created for merging
2025-03-26 00:44:22,859 [ scc.git] DEBUG Calling 'git remote'
Synchronizing submodule url for 'omero-dropbox'
Synchronizing submodule url for 'omero-marshal'
Synchronizing submodule url for 'omero-py'
Synchronizing submodule url for 'omero-scripts'
Synchronizing submodule url for 'omero-web'
Merge all submodules using repository configuration:
base-branch: master
submodules:
omero-scripts:
base-branch: develop
2025-03-26 00:44:24,982 [ scc.config] DEBUG Found github.token
2025-03-26 00:44:24,984 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:25,152 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-03-26 00:44:25,404 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:25,577 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-03-26 00:44:25,830 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:26,003 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2025-03-26 00:44:26,004 [ scc.gh] DEBUG 4619 remaining from 5000 (Reset at 01:03
2025-03-26 00:44:26,005 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2025-03-26 00:44:26,009 [ scc.git] DEBUG Check current status
2025-03-26 00:44:26,009 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2025-03-26 00:44:26,013 [ scc.git] DEBUG 1eb05dd merge master -Dorg -Snone
2025-03-26 00:44:26,013 [ scc.git] DEBUG Calling 'git submodule status'
2025-03-26 00:44:26,058 [ scc.git] DEBUG 01fa0c567e5391e5f920bd17d6e9eab210c9df67 omero-dropbox (v5.7.0-7-g01fa0c5)
2025-03-26 00:44:26,061 [ scc.git] DEBUG 6d44f663b2c9680b027c29da4e98430e03403bb1 omero-marshal (v0.9.0-13-g6d44f66)
2025-03-26 00:44:26,066 [ scc.git] DEBUG af8e5b4fe021bfc1173df42fff5d71a90b8fbfc5 omero-py (v5.19.6-12-gaf8e5b4f)
2025-03-26 00:44:26,071 [ scc.git] DEBUG 950b28b31e228ae7b317cbd159235faf4023e4dc omero-scripts (v5.9.0-6-g950b28b)
2025-03-26 00:44:26,075 [ scc.git] DEBUG 4b979f847a45a13ead11e7b39705ec1656376fbc omero-web (v5.29.0-1-g4b979f847)
2025-03-26 00:44:26,080 [ scc.config] DEBUG Found remote.origin.url
2025-03-26 00:44:26,080 [ scc.git] DEBUG Reading repository configuration from repositories.yml
2025-03-26 00:44:26,082 [ scc.git] DEBUG Repository configuration:
base-branch: master
submodules:
omero-scripts:
base-branch: develop
2025-03-26 00:44:26,256 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:26,516 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild HTTP/1.1" 200 None
2025-03-26 00:44:26,769 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:26,983 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2025-03-26 00:44:27,236 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:27,430 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2025-03-26 00:44:27,683 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:27,855 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2025-03-26 00:44:28,107 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:28,273 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2025-03-26 00:44:28,274 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-03-26 00:44:28,327 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-dropbox
2025-03-26 00:44:28,328 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2025-03-26 00:44:28,332 [ scc.git] DEBUG Check current status
2025-03-26 00:44:28,332 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2025-03-26 00:44:28,337 [ scc.git] DEBUG 01fa0c5 Merge pull request #24 from jburel/build
2025-03-26 00:44:28,337 [ scc.git] DEBUG Calling 'git submodule status'
2025-03-26 00:44:28,385 [ scc.config] DEBUG Found remote.origin.url
2025-03-26 00:44:28,526 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:28,809 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox HTTP/1.1" 200 None
2025-03-26 00:44:29,062 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:29,319 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2025-03-26 00:44:29,571 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:29,763 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2025-03-26 00:44:30,016 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:30,194 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2025-03-26 00:44:30,446 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:30,711 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2025-03-26 00:44:30,712 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-03-26 00:44:30,756 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2025-03-26 00:44:30,757 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-marshal
2025-03-26 00:44:30,757 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2025-03-26 00:44:30,761 [ scc.git] DEBUG Check current status
2025-03-26 00:44:30,761 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2025-03-26 00:44:30,765 [ scc.git] DEBUG 6d44f66 Merge pull request #82 from jburel/build
2025-03-26 00:44:30,765 [ scc.git] DEBUG Calling 'git submodule status'
2025-03-26 00:44:30,810 [ scc.config] DEBUG Found remote.origin.url
2025-03-26 00:44:30,964 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:31,207 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal HTTP/1.1" 200 None
2025-03-26 00:44:31,460 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:31,708 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2025-03-26 00:44:31,960 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:32,137 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2025-03-26 00:44:32,389 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:32,598 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2025-03-26 00:44:32,850 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:33,018 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2025-03-26 00:44:33,019 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-03-26 00:44:33,065 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2025-03-26 00:44:33,065 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-py
2025-03-26 00:44:33,066 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2025-03-26 00:44:33,070 [ scc.git] DEBUG Check current status
2025-03-26 00:44:33,070 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2025-03-26 00:44:33,075 [ scc.git] DEBUG af8e5b4f Merge pull request #455 from sbesson/omero-blitz-python-5.8.1
2025-03-26 00:44:33,075 [ scc.git] DEBUG Calling 'git submodule status'
2025-03-26 00:44:33,123 [ scc.config] DEBUG Found remote.origin.url
2025-03-26 00:44:33,271 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:33,536 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py HTTP/1.1" 200 None
2025-03-26 00:44:33,789 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:34,026 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2025-03-26 00:44:34,278 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:34,448 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2025-03-26 00:44:34,701 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:34,887 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2025-03-26 00:44:35,141 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:35,320 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2025-03-26 00:44:35,322 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-03-26 00:44:35,367 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2025-03-26 00:44:35,368 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-scripts
2025-03-26 00:44:35,368 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2025-03-26 00:44:35,374 [ scc.git] DEBUG Check current status
2025-03-26 00:44:35,374 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2025-03-26 00:44:35,378 [ scc.git] DEBUG 950b28b Merge pull request #225 from will-moore/test_fixes
2025-03-26 00:44:35,378 [ scc.git] DEBUG Calling 'git submodule status'
2025-03-26 00:44:35,424 [ scc.config] DEBUG Found remote.origin.url
2025-03-26 00:44:35,425 [ scc.git] DEBUG Repository configuration:
base-branch: develop
2025-03-26 00:44:35,574 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:35,838 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts HTTP/1.1" 200 None
2025-03-26 00:44:36,091 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:36,315 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2025-03-26 00:44:36,567 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:36,761 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2025-03-26 00:44:37,013 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:37,230 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2025-03-26 00:44:37,482 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:37,655 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2025-03-26 00:44:37,656 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-03-26 00:44:37,697 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2025-03-26 00:44:37,698 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-web
2025-03-26 00:44:37,698 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2025-03-26 00:44:37,702 [ scc.git] DEBUG Check current status
2025-03-26 00:44:37,702 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2025-03-26 00:44:37,706 [ scc.git] DEBUG 4b979f847 Bump version: 5.29.0 → 5.29.1.dev0
2025-03-26 00:44:37,707 [ scc.git] DEBUG Calling 'git submodule status'
2025-03-26 00:44:37,752 [ scc.config] DEBUG Found remote.origin.url
2025-03-26 00:44:37,908 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:38,200 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web HTTP/1.1" 200 None
2025-03-26 00:44:38,452 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:38,708 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2025-03-26 00:44:38,960 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:39,136 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2025-03-26 00:44:39,388 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:39,565 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2025-03-26 00:44:39,817 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:39,993 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2025-03-26 00:44:39,994 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-03-26 00:44:40,036 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2025-03-26 00:44:40,037 [ scc.git] DEBUG Resetting...
2025-03-26 00:44:40,037 [ scc.git] DEBUG Calling 'git reset --hard HEAD'
2025-03-26 00:44:40,044 [ scc.git] DEBUG HEAD is now at 1eb05dd merge master -Dorg -Snone
2025-03-26 00:44:40,044 [ scc.git] DEBUG Calling 'git submodule update --recursive'
2025-03-26 00:44:40,101 [ scc.git] DEBUG Check current status
2025-03-26 00:44:40,101 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2025-03-26 00:44:40,105 [ scc.git] DEBUG 1eb05dd merge master -Dorg -Snone
2025-03-26 00:44:40,106 [ scc.git] DEBUG Calling 'git submodule status'
2025-03-26 00:44:40,147 [ scc.git] DEBUG 01fa0c567e5391e5f920bd17d6e9eab210c9df67 omero-dropbox (v5.7.0-7-g01fa0c5)
2025-03-26 00:44:40,150 [ scc.git] DEBUG 6d44f663b2c9680b027c29da4e98430e03403bb1 omero-marshal (v0.9.0-13-g6d44f66)
2025-03-26 00:44:40,155 [ scc.git] DEBUG af8e5b4fe021bfc1173df42fff5d71a90b8fbfc5 omero-py (v5.19.6-12-gaf8e5b4f)
2025-03-26 00:44:40,159 [ scc.git] DEBUG 950b28b31e228ae7b317cbd159235faf4023e4dc omero-scripts (v5.9.0-6-g950b28b)
2025-03-26 00:44:40,164 [ scc.git] DEBUG 4b979f847a45a13ead11e7b39705ec1656376fbc omero-web (v5.29.0-1-g4b979f847)
2025-03-26 00:44:40,164 [ scc.merge] INFO Merging Pull Request(s) based on master
2025-03-26 00:44:40,165 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
2025-03-26 00:44:40,165 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
2025-03-26 00:44:40,165 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
2025-03-26 00:44:40,165 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
2025-03-26 00:44:40,165 [ scc.merge] INFO Excluding Pull Request(s) without successful status
2025-03-26 00:44:40,165 [ scc.repo] DEBUG ## PRs found:
2025-03-26 00:44:40,245 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:40,431 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/pulls HTTP/1.1" 200 2
2025-03-26 00:44:40,431 [ scc.repo] DEBUG ## Branches found:
2025-03-26 00:44:40,432 [ scc.git] DEBUG Get sha1 of %s
2025-03-26 00:44:40,432 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-03-26 00:44:40,436 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-03-26 00:44:40,440 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-03-26 00:44:40,440 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-03-26 00:44:40,444 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-03-26 00:44:40,449 [ scc.git] DEBUG Already up to date.
2025-03-26 00:44:40,449 [ scc.git] DEBUG ## Unique users: []
2025-03-26 00:44:40,449 [ scc.git] DEBUG Get sha1 of %s
2025-03-26 00:44:40,449 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-03-26 00:44:40,453 [ scc.git] DEBUG Calling 'git submodule update'
2025-03-26 00:44:40,495 [ scc.git] DEBUG Get sha1 of %s
2025-03-26 00:44:40,495 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-03-26 00:44:40,499 [ scc.repo] DEBUG ## PRs found:
2025-03-26 00:44:40,684 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:40,965 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/pulls HTTP/1.1" 200 None
2025-03-26 00:44:41,218 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:41,434 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/issues/16 HTTP/1.1" 200 None
2025-03-26 00:44:41,686 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:41,963 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/issues/16/comments HTTP/1.1" 200 None
2025-03-26 00:44:42,216 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:42,499 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/commits/f802993eba0b6514d0e31f0f7d5b996ffb54b452 HTTP/1.1" 200 None
2025-03-26 00:44:42,751 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:43,001 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/commits/f802993eba0b6514d0e31f0f7d5b996ffb54b452/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-03-26 00:44:43,253 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:43,563 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/commits/f802993eba0b6514d0e31f0f7d5b996ffb54b452 HTTP/1.1" 200 None
2025-03-26 00:44:43,816 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:44,001 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/statuses/f802993eba0b6514d0e31f0f7d5b996ffb54b452?per_page=1 HTTP/1.1" 200 2
2025-03-26 00:44:44,002 [ scc.repo] DEBUG - PR 16 joshmoore 'Review all instances of whitelist/blacklist'
2025-03-26 00:44:44,002 [ scc.repo] DEBUG ## Branches found:
2025-03-26 00:44:44,002 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-dropbox
2025-03-26 00:44:44,002 [ scc.git] DEBUG Get sha1 of %s
2025-03-26 00:44:44,002 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-03-26 00:44:44,007 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-03-26 00:44:44,011 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-03-26 00:44:44,011 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-03-26 00:44:44,016 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-03-26 00:44:44,020 [ scc.git] DEBUG Already up to date.
2025-03-26 00:44:44,021 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head'
2025-03-26 00:44:44,353 [ scc.git] DEBUG From https://github.com/ome/omero-dropbox
2025-03-26 00:44:44,353 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD
2025-03-26 00:44:44,357 [ scc.git] DEBUG ## Unique users: []
2025-03-26 00:44:44,357 [ scc.git] DEBUG Get sha1 of %s
2025-03-26 00:44:44,357 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-03-26 00:44:44,362 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...f802993eba0b6514d0e31f0f7d5b996ffb54b452'
2025-03-26 00:44:44,367 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-03-26 00:44:44,371 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Review all instances of whitelist/blacklist) f802993eba0b6514d0e31f0f7d5b996ffb54b452'
2025-03-26 00:44:44,538 [ scc.git] DEBUG Auto-merging src/fsAbstractPlatformMonitor.py
2025-03-26 00:44:44,538 [ scc.git] DEBUG Auto-merging src/fsDirectory.py
2025-03-26 00:44:44,538 [ scc.git] DEBUG Auto-merging src/fsDropBox.py
2025-03-26 00:44:44,538 [ scc.git] DEBUG Auto-merging src/fsLists.py
2025-03-26 00:44:44,538 [ scc.git] DEBUG Auto-merging src/fsMac-10-5-Monitor.py
2025-03-26 00:44:44,538 [ scc.git] DEBUG Auto-merging src/fsMonitor.py
2025-03-26 00:44:44,538 [ scc.git] DEBUG Auto-merging src/fsMonitorServer.py
2025-03-26 00:44:44,538 [ scc.git] DEBUG Auto-merging src/fsPyinotifyMonitor.py
2025-03-26 00:44:44,538 [ scc.git] DEBUG Auto-merging src/fsWin-XP-Monitor.py
2025-03-26 00:44:44,539 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-03-26 00:44:44,543 [ scc.git] DEBUG src/fsAbstractPlatformMonitor.py | 6 +++---
2025-03-26 00:44:44,543 [ scc.git] DEBUG src/fsDirectory.py | 46 ++++++++++++++++++++--------------------
2025-03-26 00:44:44,543 [ scc.git] DEBUG src/fsDropBox.py | 24 ++++++++++-----------
2025-03-26 00:44:44,543 [ scc.git] DEBUG src/fsLists.py | 14 ++++++------
2025-03-26 00:44:44,543 [ scc.git] DEBUG src/fsMac-10-5-Monitor.py | 10 ++++-----
2025-03-26 00:44:44,543 [ scc.git] DEBUG src/fsMonitor.py | 24 ++++++++++-----------
2025-03-26 00:44:44,543 [ scc.git] DEBUG src/fsMonitorServer.py | 10 ++++-----
2025-03-26 00:44:44,543 [ scc.git] DEBUG src/fsPyinotifyMonitor.py | 8 +++----
2025-03-26 00:44:44,544 [ scc.git] DEBUG src/fsWin-XP-Monitor.py | 20 ++++++++---------
2025-03-26 00:44:44,546 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:44,546 [ scc.git] DEBUG 9 files changed, 81 insertions(+), 81 deletions(-)
2025-03-26 00:44:44,709 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-03-26 00:44:44,710 [ scc.git] DEBUG Calling 'git submodule update'
2025-03-26 00:44:44,753 [ scc.git] DEBUG Get sha1 of %s
2025-03-26 00:44:44,753 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-03-26 00:44:44,757 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-03-26 00:44:44,799 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-03-26 00:44:44,805 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fc7edd5e460> has no local changes
2025-03-26 00:44:44,805 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-dropbox
Already up to date.
Merged PRs:
- PR 16 joshmoore 'Review all instances of whitelist/blacklist'
Generated by OMERO-python-superbuild-push#354 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/354/)'
2025-03-26 00:44:44,814 [ scc.git] DEBUG [detached HEAD b14bcae] merge master -Dorg -Ssuccess-only
2025-03-26 00:44:44,814 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2025-03-26 00:44:44,814 [ scc.repo] DEBUG ## PRs found:
2025-03-26 00:44:44,961 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:45,287 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/pulls HTTP/1.1" 200 None
2025-03-26 00:44:45,540 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:45,774 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/84 HTTP/1.1" 200 None
2025-03-26 00:44:46,027 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:46,215 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/84/comments HTTP/1.1" 200 None
2025-03-26 00:44:46,468 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:46,694 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/69 HTTP/1.1" 200 None
2025-03-26 00:44:46,946 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:47,171 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/69/comments HTTP/1.1" 200 None
2025-03-26 00:44:47,423 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:47,711 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/commits/1cbe0bebb081ffedb835c966ecb434d33502ceca HTTP/1.1" 200 None
2025-03-26 00:44:47,963 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:48,202 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/commits/1cbe0bebb081ffedb835c966ecb434d33502ceca/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-03-26 00:44:48,454 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:48,712 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/commits/1cbe0bebb081ffedb835c966ecb434d33502ceca HTTP/1.1" 200 None
2025-03-26 00:44:48,965 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:49,138 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/statuses/1cbe0bebb081ffedb835c966ecb434d33502ceca?per_page=1 HTTP/1.1" 200 2
2025-03-26 00:44:49,138 [ scc.repo] DEBUG - PR 69 will-moore 'Roi encoder allows Shape None'
2025-03-26 00:44:49,390 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:49,715 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/34 HTTP/1.1" 200 None
2025-03-26 00:44:49,967 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:50,219 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/34/comments HTTP/1.1" 200 None
2025-03-26 00:44:50,471 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:50,703 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/33 HTTP/1.1" 200 None
2025-03-26 00:44:50,955 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:51,186 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/33/comments HTTP/1.1" 200 None
2025-03-26 00:44:51,187 [ scc.repo] DEBUG ## Branches found:
2025-03-26 00:44:51,187 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-marshal
2025-03-26 00:44:51,187 [ scc.git] DEBUG Get sha1 of %s
2025-03-26 00:44:51,188 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-03-26 00:44:51,193 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-03-26 00:44:51,197 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-03-26 00:44:51,197 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-03-26 00:44:51,202 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-03-26 00:44:51,206 [ scc.git] DEBUG Already up to date.
2025-03-26 00:44:51,207 [ scc.git] DEBUG Calling 'git fetch origin pull/69/head'
2025-03-26 00:44:51,726 [ scc.git] DEBUG From https://github.com/ome/omero-marshal
2025-03-26 00:44:51,726 [ scc.git] DEBUG * branch refs/pull/69/head -> FETCH_HEAD
2025-03-26 00:44:51,731 [ scc.git] DEBUG ## Unique users: []
2025-03-26 00:44:51,732 [ scc.git] DEBUG Get sha1 of %s
2025-03-26 00:44:51,732 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-03-26 00:44:51,737 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1cbe0bebb081ffedb835c966ecb434d33502ceca'
2025-03-26 00:44:51,742 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-03-26 00:44:51,746 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 69 (Roi encoder allows Shape None) 1cbe0bebb081ffedb835c966ecb434d33502ceca'
2025-03-26 00:44:51,806 [ scc.git] DEBUG Auto-merging tests/unit/conftest.py
2025-03-26 00:44:51,807 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-03-26 00:44:51,810 [ scc.git] DEBUG omero_marshal/encode/encoders/roi.py | 5 +++--
2025-03-26 00:44:51,810 [ scc.git] DEBUG tests/unit/conftest.py | 5 ++++-
2025-03-26 00:44:51,810 [ scc.git] DEBUG 2 files changed, 7 insertions(+), 3 deletions(-)
2025-03-26 00:44:51,813 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
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2025-03-26 00:44:51,974 [ scc.git] DEBUG Calling 'git submodule update'
2025-03-26 00:44:52,015 [ scc.git] DEBUG Get sha1 of %s
2025-03-26 00:44:52,015 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-03-26 00:44:52,019 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-03-26 00:44:52,059 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-03-26 00:44:52,065 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fc7edd398e0> has no local changes
2025-03-26 00:44:52,065 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-marshal
Excluded PRs:
- PR 84 joshmoore 'New JSON-LD context-based version' (stage: draft)
- PR 34 chris-allan 'Initial support for Event' (exclude comment)
- PR 33 chris-allan 'Encode/Decode Experimenters with ExperimenterGroup' (exclude comment)
Already up to date.
Merged PRs:
- PR 69 will-moore 'Roi encoder allows Shape None'
Generated by OMERO-python-superbuild-push#354 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/354/)'
2025-03-26 00:44:52,073 [ scc.git] DEBUG [detached HEAD b4504d8] merge master -Dorg -Ssuccess-only
2025-03-26 00:44:52,073 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2025-03-26 00:44:52,073 [ scc.repo] DEBUG ## PRs found:
2025-03-26 00:44:52,226 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
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2025-03-26 00:44:55,921 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:56,151 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/1e9ac6f8c9c19fcfd080f827d2923da8bcc75bd0 HTTP/1.1" 200 None
2025-03-26 00:44:56,403 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
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2025-03-26 00:44:56,605 [ scc.repo] DEBUG - PR 454 sbesson 'Remove all usage of sha library in favor of hashlib'
2025-03-26 00:44:56,856 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
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2025-03-26 00:44:58,874 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
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2025-03-26 00:44:59,367 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:44:59,647 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/ff9ad445b6af7725ab17a39185630b8919e42bab HTTP/1.1" 200 None
2025-03-26 00:44:59,901 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:00,076 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/ff9ad445b6af7725ab17a39185630b8919e42bab?per_page=1 HTTP/1.1" 200 None
2025-03-26 00:45:00,329 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:00,568 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/ff9ad445b6af7725ab17a39185630b8919e42bab HTTP/1.1" 200 None
2025-03-26 00:45:00,820 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:01,008 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/ff9ad445b6af7725ab17a39185630b8919e42bab/status HTTP/1.1" 200 None
2025-03-26 00:45:01,009 [ scc.repo] DEBUG - PR 453 will-moore 'getObject() and getExternalInfo() load externalInfo'
2025-03-26 00:45:01,260 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:01,487 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/450 HTTP/1.1" 200 None
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2025-03-26 00:45:02,225 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
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2025-03-26 00:45:02,705 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
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2025-03-26 00:45:03,218 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
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2025-03-26 00:45:03,735 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:03,981 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/1b8c6f6bef2c3eb802692d41cb4f716af5644d10/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-03-26 00:45:04,233 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:04,513 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/1b8c6f6bef2c3eb802692d41cb4f716af5644d10 HTTP/1.1" 200 None
2025-03-26 00:45:04,765 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:04,965 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/1b8c6f6bef2c3eb802692d41cb4f716af5644d10?per_page=1 HTTP/1.1" 200 None
2025-03-26 00:45:05,217 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:05,471 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/1b8c6f6bef2c3eb802692d41cb4f716af5644d10 HTTP/1.1" 200 None
2025-03-26 00:45:05,723 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:05,928 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/1b8c6f6bef2c3eb802692d41cb4f716af5644d10/status HTTP/1.1" 200 None
2025-03-26 00:45:05,929 [ scc.repo] DEBUG - PR 445 sbesson 'Remove numpy<2 capping'
2025-03-26 00:45:06,180 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:06,431 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/443 HTTP/1.1" 200 None
2025-03-26 00:45:06,683 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:06,937 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/443/comments HTTP/1.1" 200 None
2025-03-26 00:45:06,939 [ scc.repo] DEBUG # ... Exclude label: exclude
2025-03-26 00:45:07,189 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:07,451 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/427 HTTP/1.1" 200 None
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2025-03-26 00:45:07,957 [ scc.repo] DEBUG # ... Include label: include
2025-03-26 00:45:08,209 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:08,508 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/debacf8571f6c58b095f393aacc1197fc4aad574 HTTP/1.1" 200 None
2025-03-26 00:45:08,760 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
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2025-03-26 00:45:09,762 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
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2025-03-26 00:45:12,377 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:12,654 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/5b69af339bf34bd4adcf16a7f6a03fafa2921804 HTTP/1.1" 200 None
2025-03-26 00:45:12,907 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:13,104 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/5b69af339bf34bd4adcf16a7f6a03fafa2921804?per_page=1 HTTP/1.1" 200 None
2025-03-26 00:45:13,357 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:13,540 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/5b69af339bf34bd4adcf16a7f6a03fafa2921804 HTTP/1.1" 200 None
2025-03-26 00:45:13,793 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
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2025-03-26 00:45:13,974 [ scc.repo] DEBUG - PR 408 jburel 'remove deprecated method'
2025-03-26 00:45:14,226 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
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2025-03-26 00:45:15,184 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
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2025-03-26 00:45:15,748 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:15,993 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c2cf271ef27269131408acb10c7cc1ecaefb0573/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-03-26 00:45:16,245 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
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2025-03-26 00:45:16,717 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
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2025-03-26 00:45:17,223 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:17,559 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/20da2ca68fa40df47b5436887597e9804098f023 HTTP/1.1" 200 None
2025-03-26 00:45:17,811 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:18,032 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/20da2ca68fa40df47b5436887597e9804098f023/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-03-26 00:45:18,284 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:18,511 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/20da2ca68fa40df47b5436887597e9804098f023 HTTP/1.1" 200 None
2025-03-26 00:45:18,764 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:18,928 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/20da2ca68fa40df47b5436887597e9804098f023?per_page=1 HTTP/1.1" 200 2
2025-03-26 00:45:18,929 [ scc.repo] DEBUG - PR 391 joshmoore 'Add jstack command'
2025-03-26 00:45:19,181 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:19,396 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/387 HTTP/1.1" 200 None
2025-03-26 00:45:19,648 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
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2025-03-26 00:45:20,370 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
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2025-03-26 00:45:20,886 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:21,109 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/5b6f3e2d8daf295a4e3f020269ed6c10391fb13c/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-03-26 00:45:21,362 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:21,628 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/5b6f3e2d8daf295a4e3f020269ed6c10391fb13c HTTP/1.1" 200 None
2025-03-26 00:45:21,920 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:22,116 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/5b6f3e2d8daf295a4e3f020269ed6c10391fb13c?per_page=1 HTTP/1.1" 200 None
2025-03-26 00:45:22,368 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:22,636 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/5b6f3e2d8daf295a4e3f020269ed6c10391fb13c HTTP/1.1" 200 None
2025-03-26 00:45:22,926 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:23,145 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/5b6f3e2d8daf295a4e3f020269ed6c10391fb13c/status HTTP/1.1" 200 None
2025-03-26 00:45:23,146 [ scc.repo] DEBUG - PR 387 will-moore 'Numpy pixels type'
2025-03-26 00:45:23,397 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:23,624 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/332 HTTP/1.1" 200 None
2025-03-26 00:45:23,876 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:24,126 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/332/comments HTTP/1.1" 200 None
2025-03-26 00:45:24,378 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:24,637 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c427fcd99373ad6c0c2d28d322827d0523ba7afc HTTP/1.1" 200 None
2025-03-26 00:45:24,889 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:25,157 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c427fcd99373ad6c0c2d28d322827d0523ba7afc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-03-26 00:45:25,409 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:25,620 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c427fcd99373ad6c0c2d28d322827d0523ba7afc/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-03-26 00:45:25,872 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:26,061 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c427fcd99373ad6c0c2d28d322827d0523ba7afc HTTP/1.1" 200 None
2025-03-26 00:45:26,313 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:26,527 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/c427fcd99373ad6c0c2d28d322827d0523ba7afc?per_page=1 HTTP/1.1" 200 None
2025-03-26 00:45:26,779 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:27,053 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c427fcd99373ad6c0c2d28d322827d0523ba7afc HTTP/1.1" 200 None
2025-03-26 00:45:27,306 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:27,495 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c427fcd99373ad6c0c2d28d322827d0523ba7afc/status HTTP/1.1" 200 None
2025-03-26 00:45:27,496 [ scc.repo] DEBUG - PR 332 jburel 'Build conda'
2025-03-26 00:45:27,747 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:27,965 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/299 HTTP/1.1" 200 None
2025-03-26 00:45:28,217 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:28,467 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/299/comments HTTP/1.1" 200 None
2025-03-26 00:45:28,719 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:28,997 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/09ae8033d77faf0346255eb9644207e02c98709a HTTP/1.1" 200 None
2025-03-26 00:45:29,249 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:29,475 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/09ae8033d77faf0346255eb9644207e02c98709a/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-03-26 00:45:29,727 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:29,924 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/09ae8033d77faf0346255eb9644207e02c98709a HTTP/1.1" 200 None
2025-03-26 00:45:30,176 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:30,358 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/09ae8033d77faf0346255eb9644207e02c98709a?per_page=1 HTTP/1.1" 200 2
2025-03-26 00:45:30,358 [ scc.repo] DEBUG - PR 299 joshmoore 'Add parents and children to omero obj'
2025-03-26 00:45:30,610 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:30,864 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/266 HTTP/1.1" 200 None
2025-03-26 00:45:31,116 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:31,365 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/df250605e81b3b5f509b4cddc3186a63d7ba364f HTTP/1.1" 200 None
2025-03-26 00:45:31,617 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:31,846 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/df250605e81b3b5f509b4cddc3186a63d7ba364f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-03-26 00:45:32,098 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:32,416 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/df250605e81b3b5f509b4cddc3186a63d7ba364f HTTP/1.1" 200 None
2025-03-26 00:45:32,668 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:32,862 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/df250605e81b3b5f509b4cddc3186a63d7ba364f?per_page=1 HTTP/1.1" 200 2
2025-03-26 00:45:32,863 [ scc.repo] DEBUG - PR 266 joshmoore 'errors: use raise_error from cli plugins'
2025-03-26 00:45:33,114 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:33,338 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/199 HTTP/1.1" 200 None
2025-03-26 00:45:33,591 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:33,844 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/199/comments HTTP/1.1" 200 None
2025-03-26 00:45:34,096 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:34,382 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/d9df94bbff36ef1f943c9ab1995cd60831e572ec HTTP/1.1" 200 None
2025-03-26 00:45:34,634 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:34,839 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/d9df94bbff36ef1f943c9ab1995cd60831e572ec/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-03-26 00:45:35,091 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:35,287 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/d9df94bbff36ef1f943c9ab1995cd60831e572ec HTTP/1.1" 200 None
2025-03-26 00:45:35,539 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:35,712 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/d9df94bbff36ef1f943c9ab1995cd60831e572ec?per_page=1 HTTP/1.1" 200 2
2025-03-26 00:45:35,712 [ scc.repo] DEBUG - PR 199 joshmoore 'user: allow setting default group'
2025-03-26 00:45:35,713 [ scc.repo] DEBUG ## Branches found:
2025-03-26 00:45:35,713 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-py
2025-03-26 00:45:35,713 [ scc.git] DEBUG Get sha1 of %s
2025-03-26 00:45:35,713 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-03-26 00:45:35,718 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-03-26 00:45:35,722 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-03-26 00:45:35,722 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-03-26 00:45:35,727 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-03-26 00:45:35,732 [ scc.git] DEBUG Already up to date.
2025-03-26 00:45:35,732 [ scc.git] DEBUG Calling 'git fetch origin pull/199/head'
2025-03-26 00:45:37,579 [ scc.git] DEBUG From https://github.com/ome/omero-py
2025-03-26 00:45:37,579 [ scc.git] DEBUG * branch refs/pull/199/head -> FETCH_HEAD
2025-03-26 00:45:37,584 [ scc.git] DEBUG Calling 'git fetch origin pull/266/head'
2025-03-26 00:45:37,881 [ scc.git] DEBUG From https://github.com/ome/omero-py
2025-03-26 00:45:37,882 [ scc.git] DEBUG * branch refs/pull/266/head -> FETCH_HEAD
2025-03-26 00:45:37,886 [ scc.git] DEBUG Calling 'git fetch origin pull/299/head'
2025-03-26 00:45:38,172 [ scc.git] DEBUG From https://github.com/ome/omero-py
2025-03-26 00:45:38,172 [ scc.git] DEBUG * branch refs/pull/299/head -> FETCH_HEAD
2025-03-26 00:45:38,177 [ scc.git] DEBUG Calling 'git fetch origin pull/332/head'
2025-03-26 00:45:38,579 [ scc.git] DEBUG From https://github.com/ome/omero-py
2025-03-26 00:45:38,579 [ scc.git] DEBUG * branch refs/pull/332/head -> FETCH_HEAD
2025-03-26 00:45:38,584 [ scc.git] DEBUG Calling 'git fetch origin pull/387/head'
2025-03-26 00:45:39,366 [ scc.git] DEBUG From https://github.com/ome/omero-py
2025-03-26 00:45:39,366 [ scc.git] DEBUG * branch refs/pull/387/head -> FETCH_HEAD
2025-03-26 00:45:39,371 [ scc.git] DEBUG Calling 'git fetch origin pull/391/head'
2025-03-26 00:45:39,663 [ scc.git] DEBUG From https://github.com/ome/omero-py
2025-03-26 00:45:39,663 [ scc.git] DEBUG * branch refs/pull/391/head -> FETCH_HEAD
2025-03-26 00:45:39,667 [ scc.git] DEBUG Calling 'git fetch origin pull/408/head'
2025-03-26 00:45:40,028 [ scc.git] DEBUG From https://github.com/ome/omero-py
2025-03-26 00:45:40,028 [ scc.git] DEBUG * branch refs/pull/408/head -> FETCH_HEAD
2025-03-26 00:45:40,033 [ scc.git] DEBUG Calling 'git fetch origin pull/445/head'
2025-03-26 00:45:40,555 [ scc.git] DEBUG From https://github.com/ome/omero-py
2025-03-26 00:45:40,555 [ scc.git] DEBUG * branch refs/pull/445/head -> FETCH_HEAD
2025-03-26 00:45:40,561 [ scc.git] DEBUG Calling 'git fetch origin pull/453/head'
2025-03-26 00:45:41,174 [ scc.git] DEBUG From https://github.com/ome/omero-py
2025-03-26 00:45:41,175 [ scc.git] DEBUG * branch refs/pull/453/head -> FETCH_HEAD
2025-03-26 00:45:41,179 [ scc.git] DEBUG Calling 'git fetch origin pull/454/head'
2025-03-26 00:45:41,648 [ scc.git] DEBUG From https://github.com/ome/omero-py
2025-03-26 00:45:41,649 [ scc.git] DEBUG * branch refs/pull/454/head -> FETCH_HEAD
2025-03-26 00:45:41,653 [ scc.git] DEBUG ## Unique users: []
2025-03-26 00:45:41,653 [ scc.git] DEBUG Get sha1 of %s
2025-03-26 00:45:41,653 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-03-26 00:45:41,658 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d9df94bbff36ef1f943c9ab1995cd60831e572ec'
2025-03-26 00:45:41,670 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-03-26 00:45:41,674 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 199 (user: allow setting default group) d9df94bbff36ef1f943c9ab1995cd60831e572ec'
2025-03-26 00:45:41,748 [ scc.git] DEBUG Auto-merging src/omero/cli.py
2025-03-26 00:45:41,748 [ scc.git] DEBUG Auto-merging src/omero/plugins/user.py
2025-03-26 00:45:41,749 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-03-26 00:45:41,753 [ scc.git] DEBUG src/omero/cli.py | 6 ++++++
2025-03-26 00:45:41,753 [ scc.git] DEBUG src/omero/plugins/user.py | 36 +++++++++++++++++++++++++++++++++---
2025-03-26 00:45:41,753 [ scc.git] DEBUG 2 files changed, 39 insertions(+), 3 deletions(-)
2025-03-26 00:45:41,756 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:41,931 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-03-26 00:45:41,932 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...df250605e81b3b5f509b4cddc3186a63d7ba364f'
2025-03-26 00:45:41,946 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-03-26 00:45:41,950 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 266 (errors: use raise_error from cli plugins) df250605e81b3b5f509b4cddc3186a63d7ba364f'
2025-03-26 00:45:42,104 [ scc.git] DEBUG Auto-merging src/omero/plugins/search.py
2025-03-26 00:45:42,105 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-03-26 00:45:42,108 [ scc.git] DEBUG src/omero/plugins/search.py | 13 +++++++++----
2025-03-26 00:45:42,108 [ scc.git] DEBUG 1 file changed, 9 insertions(+), 4 deletions(-)
2025-03-26 00:45:42,184 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:42,348 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-03-26 00:45:42,348 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...09ae8033d77faf0346255eb9644207e02c98709a'
2025-03-26 00:45:42,362 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-03-26 00:45:42,368 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 299 (Add parents and children to omero obj) 09ae8033d77faf0346255eb9644207e02c98709a'
2025-03-26 00:45:42,572 [ scc.git] DEBUG Auto-merging src/omero/plugins/obj.py
2025-03-26 00:45:42,572 [ scc.git] DEBUG Auto-merging test/unit/clitest/test_obj.py
2025-03-26 00:45:42,573 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-03-26 00:45:42,577 [ scc.git] DEBUG src/omero/plugins/obj.py | 69 ++++++++++++++++++++++++++++++++++++++++++-
2025-03-26 00:45:42,577 [ scc.git] DEBUG test/unit/clitest/test_obj.py | 2 +-
2025-03-26 00:45:42,577 [ scc.git] DEBUG 2 files changed, 69 insertions(+), 2 deletions(-)
2025-03-26 00:45:42,600 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:42,755 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-03-26 00:45:42,756 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c427fcd99373ad6c0c2d28d322827d0523ba7afc'
2025-03-26 00:45:42,769 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-03-26 00:45:42,773 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 332 (Build conda) c427fcd99373ad6c0c2d28d322827d0523ba7afc'
2025-03-26 00:45:42,852 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-03-26 00:45:42,855 [ scc.git] DEBUG .github/workflows/install.yml | 37 +++++++++++++++++++++++++++++++++++++
2025-03-26 00:45:42,855 [ scc.git] DEBUG connect.py | 11 +++++++++++
2025-03-26 00:45:42,856 [ scc.git] DEBUG 2 files changed, 48 insertions(+)
2025-03-26 00:45:42,856 [ scc.git] DEBUG create mode 100644 .github/workflows/install.yml
2025-03-26 00:45:42,856 [ scc.git] DEBUG create mode 100644 connect.py
2025-03-26 00:45:43,008 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:43,166 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-03-26 00:45:43,166 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5b6f3e2d8daf295a4e3f020269ed6c10391fb13c'
2025-03-26 00:45:43,180 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-03-26 00:45:43,185 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 387 (Numpy pixels type) 5b6f3e2d8daf295a4e3f020269ed6c10391fb13c'
2025-03-26 00:45:43,394 [ scc.git] DEBUG Auto-merging src/omero/gateway/__init__.py
2025-03-26 00:45:43,395 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-03-26 00:45:43,403 [ scc.git] DEBUG src/omero/gateway/__init__.py | 50 +++++++++++++++++++++++--------------------
2025-03-26 00:45:43,403 [ scc.git] DEBUG 1 file changed, 27 insertions(+), 23 deletions(-)
2025-03-26 00:45:43,418 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:43,586 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-03-26 00:45:43,587 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...20da2ca68fa40df47b5436887597e9804098f023'
2025-03-26 00:45:43,602 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-03-26 00:45:43,606 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 391 (Add jstack command) 20da2ca68fa40df47b5436887597e9804098f023'
2025-03-26 00:45:43,679 [ scc.git] DEBUG Auto-merging src/omero/plugins/admin.py
2025-03-26 00:45:43,681 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-03-26 00:45:43,685 [ scc.git] DEBUG src/omero/plugins/admin.py | 61 ++++++++++++++++++++++++++++++++++++++++++++--
2025-03-26 00:45:43,685 [ scc.git] DEBUG 1 file changed, 59 insertions(+), 2 deletions(-)
2025-03-26 00:45:43,839 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:44,045 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-03-26 00:45:44,046 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5b69af339bf34bd4adcf16a7f6a03fafa2921804'
2025-03-26 00:45:44,059 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-03-26 00:45:44,064 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 408 (remove deprecated method) 5b69af339bf34bd4adcf16a7f6a03fafa2921804'
2025-03-26 00:45:44,383 [ scc.git] DEBUG Auto-merging src/omero/gateway/__init__.py
2025-03-26 00:45:44,385 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-03-26 00:45:44,392 [ scc.git] DEBUG src/omero/gateway/__init__.py | 36 ------------------------------------
2025-03-26 00:45:44,392 [ scc.git] DEBUG 1 file changed, 36 deletions(-)
2025-03-26 00:45:44,395 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:44,566 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-03-26 00:45:44,566 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1b8c6f6bef2c3eb802692d41cb4f716af5644d10'
2025-03-26 00:45:44,580 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-03-26 00:45:44,585 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 445 (Remove numpy<2 capping) 1b8c6f6bef2c3eb802692d41cb4f716af5644d10'
2025-03-26 00:45:44,832 [ scc.git] DEBUG Auto-merging setup.py
2025-03-26 00:45:44,834 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-03-26 00:45:44,837 [ scc.git] DEBUG setup.py | 3 ++-
2025-03-26 00:45:44,837 [ scc.git] DEBUG 1 file changed, 2 insertions(+), 1 deletion(-)
2025-03-26 00:45:44,840 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:44,996 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-03-26 00:45:44,997 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...ff9ad445b6af7725ab17a39185630b8919e42bab'
2025-03-26 00:45:45,011 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-03-26 00:45:45,015 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 453 (getObject() and getExternalInfo() load externalInfo) ff9ad445b6af7725ab17a39185630b8919e42bab'
2025-03-26 00:45:45,115 [ scc.git] DEBUG Auto-merging src/omero/gateway/__init__.py
2025-03-26 00:45:45,115 [ scc.git] DEBUG Auto-merging src/omero/plugins/obj.py
2025-03-26 00:45:45,115 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero/plugins/obj.py
2025-03-26 00:45:45,115 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-03-26 00:45:45,116 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-03-26 00:45:45,122 [ scc.git] DEBUG Calling 'git reset --hard 2c26d7f0f1f2a0c8634e2c0807fef8c513f4ba15'
2025-03-26 00:45:45,133 [ scc.git] DEBUG HEAD is now at 2c26d7f0 merge master -Dorg -Ssuccess-only: PR 445 (Remove numpy<2 capping)
2025-03-26 00:45:45,249 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:45,403 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-03-26 00:45:45,404 [ scc.git] DEBUG Calling 'git merge-base af8e5b4fe021bfc1173df42fff5d71a90b8fbfc5 ff9ad445b6af7725ab17a39185630b8919e42bab'
2025-03-26 00:45:45,410 [ scc.git] DEBUG Calling 'git diff --name-only 05d52412ff7d6c4e3a515717d2807b1a21bf4291..af8e5b4fe021bfc1173df42fff5d71a90b8fbfc5'
2025-03-26 00:45:45,415 [ scc.git] INFO - PR 453 will-moore 'getObject() and getExternalInfo() load externalInfo'
Conflicting PR. Removed from build [OMERO-python-superbuild-push#354](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/354/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/354/consoleText) for more details.
Possible conflicts:
- PR #299 joshmoore 'Add parents and children to omero obj'
- src/omero/plugins/obj.py
--conflicts
2025-03-26 00:45:45,419 [ scc.config] DEBUG Found github.token
2025-03-26 00:45:45,419 [ scc.git] DEBUG Adding comment to issue #453.
2025-03-26 00:45:45,656 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:46,221 [urllib3.conn] DEBUG https://api.github.com:443 "POST /repos/ome/omero-py/issues/453/comments HTTP/1.1" 201 2044
2025-03-26 00:45:46,222 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1e9ac6f8c9c19fcfd080f827d2923da8bcc75bd0'
2025-03-26 00:45:46,236 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-03-26 00:45:46,240 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 454 (Remove all usage of sha library in favor of hashlib) 1e9ac6f8c9c19fcfd080f827d2923da8bcc75bd0'
2025-03-26 00:45:46,278 [ scc.git] DEBUG Auto-merging src/omero/gateway/__init__.py
2025-03-26 00:45:46,279 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-03-26 00:45:46,287 [ scc.git] DEBUG src/omero/clients.py | 4 ++--
2025-03-26 00:45:46,287 [ scc.git] DEBUG src/omero/gateway/__init__.py | 9 ++-------
2025-03-26 00:45:46,287 [ scc.git] DEBUG src/omero/plugins/_upload_deprecated.py | 7 -------
2025-03-26 00:45:46,287 [ scc.git] DEBUG src/omero/plugins/script.py | 4 ++--
2025-03-26 00:45:46,287 [ scc.git] DEBUG src/omero/util/script_utils.py | 11 +++--------
2025-03-26 00:45:46,287 [ scc.git] DEBUG 5 files changed, 9 insertions(+), 26 deletions(-)
2025-03-26 00:45:46,474 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:46,627 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-03-26 00:45:46,628 [ scc.git] DEBUG Calling 'git submodule update'
2025-03-26 00:45:46,673 [ scc.git] DEBUG Get sha1 of %s
2025-03-26 00:45:46,673 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-03-26 00:45:46,679 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-03-26 00:45:46,721 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-03-26 00:45:46,731 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fc7edcddf70> has no local changes
2025-03-26 00:45:46,732 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-py
Excluded PRs:
- PR 450 multimeric 'Add model stubs' (user: multimeric)
- PR 443 sbesson 'Gateway tests: remove logic downloading public DV files for testing' (label: exclude)
- PR 427 Rdornier 'Add fileset folder creation' (status: action_required)
- PR 396 joshmoore 'Config property for passing environment variables (see #395)' (status: failure)
Already up to date.
Merged PRs:
- PR 199 joshmoore 'user: allow setting default group'
- PR 266 joshmoore 'errors: use raise_error from cli plugins'
- PR 299 joshmoore 'Add parents and children to omero obj'
- PR 332 jburel 'Build conda'
- PR 387 will-moore 'Numpy pixels type'
- PR 391 joshmoore 'Add jstack command'
- PR 408 jburel 'remove deprecated method'
- PR 445 sbesson 'Remove numpy<2 capping'
- PR 454 sbesson 'Remove all usage of sha library in favor of hashlib'
Conflicting PRs (not included):
- PR 453 will-moore 'getObject() and getExternalInfo() load externalInfo'
Generated by OMERO-python-superbuild-push#354 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/354/)'
2025-03-26 00:45:46,745 [ scc.git] DEBUG [detached HEAD cf4725e4] merge master -Dorg -Ssuccess-only
2025-03-26 00:45:46,745 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2025-03-26 00:45:46,745 [ scc.git] INFO Overriding base-branch from master to develop
2025-03-26 00:45:46,745 [ scc.repo] DEBUG ## PRs found:
2025-03-26 00:45:46,880 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:47,194 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2025-03-26 00:45:47,446 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:47,686 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223 HTTP/1.1" 200 None
2025-03-26 00:45:47,938 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:48,149 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223/comments HTTP/1.1" 200 None
2025-03-26 00:45:48,401 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:48,665 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-03-26 00:45:48,917 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:49,155 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-03-26 00:45:49,407 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:49,652 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-03-26 00:45:49,904 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:50,107 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-03-26 00:45:50,359 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:50,539 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/d8b2bbd6f5066de883a41ba5338662d60472b0d8?per_page=1 HTTP/1.1" 200 2
2025-03-26 00:45:50,539 [ scc.repo] DEBUG - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-03-26 00:45:50,791 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:51,006 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202 HTTP/1.1" 200 None
2025-03-26 00:45:51,258 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:51,468 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202/comments HTTP/1.1" 200 None
2025-03-26 00:45:51,720 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:52,022 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-03-26 00:45:52,274 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:52,501 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-03-26 00:45:52,753 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:53,042 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-03-26 00:45:53,295 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:53,481 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/1fd6030669613cdb8879cfe6395db8c820fdcf19?per_page=1 HTTP/1.1" 200 2
2025-03-26 00:45:53,482 [ scc.repo] DEBUG - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-03-26 00:45:53,733 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:53,975 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None
2025-03-26 00:45:54,227 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:54,512 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None
2025-03-26 00:45:54,765 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:54,994 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103 HTTP/1.1" 200 None
2025-03-26 00:45:55,247 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:55,494 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103/comments HTTP/1.1" 200 None
2025-03-26 00:45:55,496 [ scc.repo] DEBUG ## Branches found:
2025-03-26 00:45:55,496 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-scripts
2025-03-26 00:45:55,496 [ scc.git] DEBUG Get sha1 of %s
2025-03-26 00:45:55,496 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-03-26 00:45:55,501 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2025-03-26 00:45:55,505 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-03-26 00:45:55,505 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2025-03-26 00:45:55,510 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2025-03-26 00:45:55,515 [ scc.git] DEBUG Already up to date.
2025-03-26 00:45:55,515 [ scc.git] DEBUG Calling 'git fetch origin pull/202/head'
2025-03-26 00:45:56,622 [ scc.git] DEBUG From https://github.com/ome/omero-scripts
2025-03-26 00:45:56,622 [ scc.git] DEBUG * branch refs/pull/202/head -> FETCH_HEAD
2025-03-26 00:45:56,627 [ scc.git] DEBUG Calling 'git fetch origin pull/223/head'
2025-03-26 00:45:57,440 [ scc.git] DEBUG From https://github.com/ome/omero-scripts
2025-03-26 00:45:57,440 [ scc.git] DEBUG * branch refs/pull/223/head -> FETCH_HEAD
2025-03-26 00:45:57,445 [ scc.git] DEBUG ## Unique users: []
2025-03-26 00:45:57,445 [ scc.git] DEBUG Get sha1 of %s
2025-03-26 00:45:57,445 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-03-26 00:45:57,449 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-03-26 00:45:57,457 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-03-26 00:45:57,461 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 202 (Add Plate support to KeyVal_to_csv.py) 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-03-26 00:45:57,505 [ scc.git] DEBUG CONFLICT (modify/delete): omero/annotation_scripts/KeyVal_to_csv.py deleted in HEAD and modified in 1fd6030669613cdb8879cfe6395db8c820fdcf19. Version 1fd6030669613cdb8879cfe6395db8c820fdcf19 of omero/annotation_scripts/KeyVal_to_csv.py left in tree.
2025-03-26 00:45:57,506 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-03-26 00:45:57,506 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-03-26 00:45:57,510 [ scc.git] DEBUG Calling 'git reset --hard 950b28b31e228ae7b317cbd159235faf4023e4dc'
2025-03-26 00:45:57,515 [ scc.git] DEBUG HEAD is now at 950b28b Merge pull request #225 from will-moore/test_fixes
2025-03-26 00:45:57,518 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:57,688 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-03-26 00:45:57,688 [ scc.git] DEBUG Calling 'git merge-base 950b28b31e228ae7b317cbd159235faf4023e4dc 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-03-26 00:45:57,695 [ scc.git] DEBUG Calling 'git diff --name-only a90f59802f6752ad74badec5c0c1d6b0c9c43b15..950b28b31e228ae7b317cbd159235faf4023e4dc'
2025-03-26 00:45:57,701 [ scc.git] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Conflicting PR. Removed from build [OMERO-python-superbuild-push#354](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/354/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/354/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero/annotation_scripts/KeyVal_to_csv.py
--conflicts
2025-03-26 00:45:57,705 [ scc.config] DEBUG Found github.token
2025-03-26 00:45:57,705 [ scc.git] DEBUG Not adding comment to issue #202, already --conflicts.
2025-03-26 00:45:57,705 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-03-26 00:45:57,712 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-03-26 00:45:57,716 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 223 (don't attempt ROI stats on big images) d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-03-26 00:45:57,727 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-03-26 00:45:57,731 [ scc.git] DEBUG omero/export_scripts/Batch_ROI_Export.py | 9 ++++++++-
2025-03-26 00:45:57,731 [ scc.git] DEBUG 1 file changed, 8 insertions(+), 1 deletion(-)
2025-03-26 00:45:57,940 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:58,100 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-03-26 00:45:58,101 [ scc.git] DEBUG Calling 'git submodule update'
2025-03-26 00:45:58,143 [ scc.git] DEBUG Get sha1 of %s
2025-03-26 00:45:58,143 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-03-26 00:45:58,147 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-03-26 00:45:58,187 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-03-26 00:45:58,193 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fc7ecc80160> has no local changes
2025-03-26 00:45:58,193 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Already up to date.
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-python-superbuild-push#354 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/354/)'
2025-03-26 00:45:58,201 [ scc.git] DEBUG [detached HEAD 7d53fb0] merge master -Dorg -Ssuccess-only
2025-03-26 00:45:58,201 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2025-03-26 00:45:58,201 [ scc.repo] DEBUG ## PRs found:
2025-03-26 00:45:58,352 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:58,790 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/pulls HTTP/1.1" 200 None
2025-03-26 00:45:59,055 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:59,274 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/614 HTTP/1.1" 200 None
2025-03-26 00:45:59,526 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:45:59,748 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/614/comments HTTP/1.1" 200 None
2025-03-26 00:46:00,000 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:00,271 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/da14d11b161eb8aa90a6e4729758ea504d5914e3 HTTP/1.1" 200 None
2025-03-26 00:46:00,523 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:00,803 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/da14d11b161eb8aa90a6e4729758ea504d5914e3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-03-26 00:46:01,055 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:01,337 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/da14d11b161eb8aa90a6e4729758ea504d5914e3/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-03-26 00:46:01,589 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:01,850 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/da14d11b161eb8aa90a6e4729758ea504d5914e3 HTTP/1.1" 200 None
2025-03-26 00:46:02,103 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:02,282 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/da14d11b161eb8aa90a6e4729758ea504d5914e3?per_page=1 HTTP/1.1" 200 None
2025-03-26 00:46:02,534 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:02,716 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/da14d11b161eb8aa90a6e4729758ea504d5914e3 HTTP/1.1" 200 None
2025-03-26 00:46:02,968 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:03,158 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/da14d11b161eb8aa90a6e4729758ea504d5914e3/status HTTP/1.1" 200 None
2025-03-26 00:46:03,158 [ scc.repo] DEBUG - PR 614 sbesson 'CodeQL workflow updates'
2025-03-26 00:46:03,410 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:03,653 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/613 HTTP/1.1" 200 None
2025-03-26 00:46:03,905 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:04,194 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/613/comments HTTP/1.1" 200 None
2025-03-26 00:46:04,446 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:04,704 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/a8c190ba1c823672143ab90d77020d652e2c084d HTTP/1.1" 200 None
2025-03-26 00:46:04,956 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:05,227 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/a8c190ba1c823672143ab90d77020d652e2c084d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-03-26 00:46:05,479 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:05,698 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/a8c190ba1c823672143ab90d77020d652e2c084d/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-03-26 00:46:05,950 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:06,213 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/a8c190ba1c823672143ab90d77020d652e2c084d HTTP/1.1" 200 None
2025-03-26 00:46:06,465 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:06,680 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/a8c190ba1c823672143ab90d77020d652e2c084d?per_page=1 HTTP/1.1" 200 None
2025-03-26 00:46:06,932 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:07,124 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/a8c190ba1c823672143ab90d77020d652e2c084d HTTP/1.1" 200 None
2025-03-26 00:46:07,376 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:07,562 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/a8c190ba1c823672143ab90d77020d652e2c084d/status HTTP/1.1" 200 None
2025-03-26 00:46:07,563 [ scc.repo] DEBUG - PR 613 will-moore 'externalInfo display'
2025-03-26 00:46:07,814 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:08,055 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/612 HTTP/1.1" 200 None
2025-03-26 00:46:08,307 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:08,516 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/612/comments HTTP/1.1" 200 None
2025-03-26 00:46:08,768 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:09,024 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06446bf912b361c22e46c5a0678b3146b91e7e26 HTTP/1.1" 200 None
2025-03-26 00:46:09,276 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:09,529 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06446bf912b361c22e46c5a0678b3146b91e7e26/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-03-26 00:46:09,781 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:10,109 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06446bf912b361c22e46c5a0678b3146b91e7e26/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-03-26 00:46:10,361 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:10,538 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06446bf912b361c22e46c5a0678b3146b91e7e26 HTTP/1.1" 200 None
2025-03-26 00:46:10,790 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:10,995 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/06446bf912b361c22e46c5a0678b3146b91e7e26?per_page=1 HTTP/1.1" 200 None
2025-03-26 00:46:11,247 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:11,448 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06446bf912b361c22e46c5a0678b3146b91e7e26 HTTP/1.1" 200 None
2025-03-26 00:46:11,700 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:11,900 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06446bf912b361c22e46c5a0678b3146b91e7e26/status HTTP/1.1" 200 None
2025-03-26 00:46:11,901 [ scc.repo] DEBUG - PR 612 will-moore 'Allow top_links to wrap if too many for space'
2025-03-26 00:46:12,152 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:12,383 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/606 HTTP/1.1" 200 None
2025-03-26 00:46:12,635 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:12,909 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/b360c3125f9471bf4001447f35c732507c2f2022 HTTP/1.1" 200 None
2025-03-26 00:46:13,162 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:13,439 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/b360c3125f9471bf4001447f35c732507c2f2022/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-03-26 00:46:13,691 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:13,923 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/b360c3125f9471bf4001447f35c732507c2f2022/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-03-26 00:46:14,175 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:14,374 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/b360c3125f9471bf4001447f35c732507c2f2022 HTTP/1.1" 200 None
2025-03-26 00:46:14,626 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:14,813 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/b360c3125f9471bf4001447f35c732507c2f2022?per_page=1 HTTP/1.1" 200 None
2025-03-26 00:46:15,065 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:15,269 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/b360c3125f9471bf4001447f35c732507c2f2022 HTTP/1.1" 200 None
2025-03-26 00:46:15,522 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:15,716 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/b360c3125f9471bf4001447f35c732507c2f2022/status HTTP/1.1" 200 None
2025-03-26 00:46:15,717 [ scc.repo] DEBUG - PR 606 knabar 'Fix issues related to images with very high channel count'
2025-03-26 00:46:15,968 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:16,189 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/604 HTTP/1.1" 200 None
2025-03-26 00:46:16,441 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:16,675 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/604/comments HTTP/1.1" 200 None
2025-03-26 00:46:16,927 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:17,218 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/15e1289cb1c1533c8606b9c9f745d1f24575bb7d HTTP/1.1" 200 None
2025-03-26 00:46:17,470 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:17,737 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/15e1289cb1c1533c8606b9c9f745d1f24575bb7d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-03-26 00:46:17,989 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:18,229 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/15e1289cb1c1533c8606b9c9f745d1f24575bb7d/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-03-26 00:46:18,482 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:18,696 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/15e1289cb1c1533c8606b9c9f745d1f24575bb7d HTTP/1.1" 200 None
2025-03-26 00:46:18,948 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:19,144 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/15e1289cb1c1533c8606b9c9f745d1f24575bb7d?per_page=1 HTTP/1.1" 200 None
2025-03-26 00:46:19,396 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:19,735 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/15e1289cb1c1533c8606b9c9f745d1f24575bb7d HTTP/1.1" 200 None
2025-03-26 00:46:19,988 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:20,210 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/15e1289cb1c1533c8606b9c9f745d1f24575bb7d/status HTTP/1.1" 200 None
2025-03-26 00:46:20,211 [ scc.repo] DEBUG - PR 604 will-moore 'Right panel perf'
2025-03-26 00:46:20,463 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:20,685 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/602 HTTP/1.1" 200 None
2025-03-26 00:46:20,686 [ scc.repo] DEBUG # ... Include label: include
2025-03-26 00:46:20,937 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:21,215 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/9119372e9fef8cab0e212f02685c8715a3307539 HTTP/1.1" 200 None
2025-03-26 00:46:21,467 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:21,708 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/9119372e9fef8cab0e212f02685c8715a3307539/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-03-26 00:46:21,960 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:22,230 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/9119372e9fef8cab0e212f02685c8715a3307539/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-03-26 00:46:22,483 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:22,768 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/9119372e9fef8cab0e212f02685c8715a3307539 HTTP/1.1" 200 None
2025-03-26 00:46:23,020 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:23,248 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/9119372e9fef8cab0e212f02685c8715a3307539?per_page=1 HTTP/1.1" 200 None
2025-03-26 00:46:23,500 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:23,759 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/9119372e9fef8cab0e212f02685c8715a3307539 HTTP/1.1" 200 None
2025-03-26 00:46:24,011 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:24,206 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/9119372e9fef8cab0e212f02685c8715a3307539/status HTTP/1.1" 200 None
2025-03-26 00:46:24,207 [ scc.repo] DEBUG - PR 602 Tom-TBT 'Inherit all annotations'
2025-03-26 00:46:24,458 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:24,719 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/596 HTTP/1.1" 200 None
2025-03-26 00:46:24,972 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:25,197 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/596/comments HTTP/1.1" 200 None
2025-03-26 00:46:25,449 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:25,747 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/3aae48f586d7b412538a45b34ddc471a26a286e8 HTTP/1.1" 200 None
2025-03-26 00:46:25,999 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:26,294 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/3aae48f586d7b412538a45b34ddc471a26a286e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-03-26 00:46:26,546 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:26,764 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/3aae48f586d7b412538a45b34ddc471a26a286e8/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-03-26 00:46:27,016 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:27,282 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/3aae48f586d7b412538a45b34ddc471a26a286e8 HTTP/1.1" 200 None
2025-03-26 00:46:27,535 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:27,733 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/3aae48f586d7b412538a45b34ddc471a26a286e8?per_page=1 HTTP/1.1" 200 None
2025-03-26 00:46:27,985 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:28,188 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/3aae48f586d7b412538a45b34ddc471a26a286e8 HTTP/1.1" 200 None
2025-03-26 00:46:28,440 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:28,631 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/3aae48f586d7b412538a45b34ddc471a26a286e8/status HTTP/1.1" 200 None
2025-03-26 00:46:28,632 [ scc.repo] DEBUG - PR 596 sukunis 'Linkify can parse anchor tag'
2025-03-26 00:46:28,883 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:29,127 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/595 HTTP/1.1" 200 None
2025-03-26 00:46:29,379 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:29,621 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/595/comments HTTP/1.1" 200 None
2025-03-26 00:46:29,874 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:30,132 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/30278b64bb39134a3f1101b600d4a82256e6eaeb HTTP/1.1" 200 None
2025-03-26 00:46:30,384 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:30,636 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/30278b64bb39134a3f1101b600d4a82256e6eaeb/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-03-26 00:46:30,888 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:31,167 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/30278b64bb39134a3f1101b600d4a82256e6eaeb/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-03-26 00:46:31,419 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:31,620 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/30278b64bb39134a3f1101b600d4a82256e6eaeb HTTP/1.1" 200 None
2025-03-26 00:46:31,872 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:32,086 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/30278b64bb39134a3f1101b600d4a82256e6eaeb?per_page=1 HTTP/1.1" 200 None
2025-03-26 00:46:32,339 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:32,546 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/30278b64bb39134a3f1101b600d4a82256e6eaeb HTTP/1.1" 200 None
2025-03-26 00:46:32,798 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:32,993 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/30278b64bb39134a3f1101b600d4a82256e6eaeb/status HTTP/1.1" 200 None
2025-03-26 00:46:32,994 [ scc.repo] DEBUG - PR 595 sukunis 'linkify supports urls that include {}[] characters'
2025-03-26 00:46:33,246 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:33,491 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/535 HTTP/1.1" 200 None
2025-03-26 00:46:33,744 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:33,962 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/535/comments HTTP/1.1" 200 None
2025-03-26 00:46:34,215 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:34,468 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/534 HTTP/1.1" 200 None
2025-03-26 00:46:34,720 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:34,960 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/534/comments HTTP/1.1" 200 None
2025-03-26 00:46:35,213 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:35,474 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/d328a0cbb5b49cd63929a8a6c6cf7a89a925d005 HTTP/1.1" 200 None
2025-03-26 00:46:35,726 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:35,986 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/d328a0cbb5b49cd63929a8a6c6cf7a89a925d005/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-03-26 00:46:36,239 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:36,480 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/d328a0cbb5b49cd63929a8a6c6cf7a89a925d005/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-03-26 00:46:36,733 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:36,990 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/d328a0cbb5b49cd63929a8a6c6cf7a89a925d005 HTTP/1.1" 200 None
2025-03-26 00:46:37,242 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:37,431 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/d328a0cbb5b49cd63929a8a6c6cf7a89a925d005?per_page=1 HTTP/1.1" 200 None
2025-03-26 00:46:37,683 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:37,881 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/d328a0cbb5b49cd63929a8a6c6cf7a89a925d005 HTTP/1.1" 200 None
2025-03-26 00:46:38,134 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:38,318 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/d328a0cbb5b49cd63929a8a6c6cf7a89a925d005/status HTTP/1.1" 200 None
2025-03-26 00:46:38,320 [ scc.repo] DEBUG - PR 534 will-moore 'get strings from omero.cmd.ERR and omero.CmdError correctly'
2025-03-26 00:46:38,571 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:38,822 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/527 HTTP/1.1" 200 None
2025-03-26 00:46:39,074 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:39,337 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/527/comments HTTP/1.1" 200 None
2025-03-26 00:46:39,590 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:39,866 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/5565fa5d8fdefd1a406a9951f80779817ea35767 HTTP/1.1" 200 None
2025-03-26 00:46:40,119 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:40,338 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/5565fa5d8fdefd1a406a9951f80779817ea35767/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-03-26 00:46:40,591 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:40,795 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/5565fa5d8fdefd1a406a9951f80779817ea35767 HTTP/1.1" 200 None
2025-03-26 00:46:41,048 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:41,228 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/5565fa5d8fdefd1a406a9951f80779817ea35767?per_page=1 HTTP/1.1" 200 2
2025-03-26 00:46:41,229 [ scc.repo] DEBUG - PR 527 will-moore 'Add some initial CSP settings to test'
2025-03-26 00:46:41,480 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:41,715 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/168 HTTP/1.1" 200 None
2025-03-26 00:46:41,967 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:42,223 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/168/comments HTTP/1.1" 200 None
2025-03-26 00:46:42,476 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:42,753 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06b0073db19eeccb9698860f75639084ad1b1200 HTTP/1.1" 200 None
2025-03-26 00:46:43,005 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:43,246 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06b0073db19eeccb9698860f75639084ad1b1200/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-03-26 00:46:43,498 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:43,708 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06b0073db19eeccb9698860f75639084ad1b1200/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-03-26 00:46:43,711 [ scc.repo] DEBUG ## Branches found:
2025-03-26 00:46:43,711 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-web
2025-03-26 00:46:43,711 [ scc.git] DEBUG Get sha1 of %s
2025-03-26 00:46:43,711 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-03-26 00:46:43,716 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-03-26 00:46:43,721 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-03-26 00:46:43,721 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-03-26 00:46:43,726 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-03-26 00:46:43,731 [ scc.git] DEBUG Already up to date.
2025-03-26 00:46:43,731 [ scc.git] DEBUG Calling 'git fetch origin pull/527/head'
2025-03-26 00:46:45,681 [ scc.git] DEBUG From https://github.com/ome/omero-web
2025-03-26 00:46:45,681 [ scc.git] DEBUG * branch refs/pull/527/head -> FETCH_HEAD
2025-03-26 00:46:45,686 [ scc.git] DEBUG Calling 'git fetch origin pull/534/head'
2025-03-26 00:46:45,996 [ scc.git] DEBUG From https://github.com/ome/omero-web
2025-03-26 00:46:45,996 [ scc.git] DEBUG * branch refs/pull/534/head -> FETCH_HEAD
2025-03-26 00:46:46,001 [ scc.git] DEBUG Calling 'git fetch origin pull/595/head'
2025-03-26 00:46:47,054 [ scc.git] DEBUG From https://github.com/ome/omero-web
2025-03-26 00:46:47,054 [ scc.git] DEBUG * branch refs/pull/595/head -> FETCH_HEAD
2025-03-26 00:46:47,059 [ scc.git] DEBUG Calling 'git fetch origin pull/596/head'
2025-03-26 00:46:47,540 [ scc.git] DEBUG From https://github.com/ome/omero-web
2025-03-26 00:46:47,540 [ scc.git] DEBUG * branch refs/pull/596/head -> FETCH_HEAD
2025-03-26 00:46:47,545 [ scc.git] DEBUG Calling 'git fetch origin pull/602/head'
2025-03-26 00:46:47,832 [ scc.git] DEBUG From https://github.com/ome/omero-web
2025-03-26 00:46:47,832 [ scc.git] DEBUG * branch refs/pull/602/head -> FETCH_HEAD
2025-03-26 00:46:47,837 [ scc.git] DEBUG Calling 'git fetch origin pull/604/head'
2025-03-26 00:46:48,503 [ scc.git] DEBUG From https://github.com/ome/omero-web
2025-03-26 00:46:48,503 [ scc.git] DEBUG * branch refs/pull/604/head -> FETCH_HEAD
2025-03-26 00:46:48,509 [ scc.git] DEBUG Calling 'git fetch origin pull/606/head'
2025-03-26 00:46:48,836 [ scc.git] DEBUG From https://github.com/ome/omero-web
2025-03-26 00:46:48,836 [ scc.git] DEBUG * branch refs/pull/606/head -> FETCH_HEAD
2025-03-26 00:46:48,841 [ scc.git] DEBUG Calling 'git fetch origin pull/612/head'
2025-03-26 00:46:49,277 [ scc.git] DEBUG From https://github.com/ome/omero-web
2025-03-26 00:46:49,277 [ scc.git] DEBUG * branch refs/pull/612/head -> FETCH_HEAD
2025-03-26 00:46:49,284 [ scc.git] DEBUG Calling 'git fetch origin pull/613/head'
2025-03-26 00:46:50,191 [ scc.git] DEBUG From https://github.com/ome/omero-web
2025-03-26 00:46:50,192 [ scc.git] DEBUG * branch refs/pull/613/head -> FETCH_HEAD
2025-03-26 00:46:50,197 [ scc.git] DEBUG Calling 'git fetch origin pull/614/head'
2025-03-26 00:46:50,694 [ scc.git] DEBUG From https://github.com/ome/omero-web
2025-03-26 00:46:50,694 [ scc.git] DEBUG * branch refs/pull/614/head -> FETCH_HEAD
2025-03-26 00:46:50,699 [ scc.git] DEBUG ## Unique users: []
2025-03-26 00:46:50,699 [ scc.git] DEBUG Get sha1 of %s
2025-03-26 00:46:50,699 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-03-26 00:46:50,704 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5565fa5d8fdefd1a406a9951f80779817ea35767'
2025-03-26 00:46:50,714 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-03-26 00:46:50,718 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 527 (Add some initial CSP settings to test) 5565fa5d8fdefd1a406a9951f80779817ea35767'
2025-03-26 00:46:50,830 [ scc.git] DEBUG Auto-merging omeroweb/settings.py
2025-03-26 00:46:50,830 [ scc.git] DEBUG Auto-merging setup.py
2025-03-26 00:46:50,832 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-03-26 00:46:50,836 [ scc.git] DEBUG omeroweb/settings.py | 42 +++++++++++++++++++++++++++++++++++++++++-
2025-03-26 00:46:50,836 [ scc.git] DEBUG setup.py | 1 +
2025-03-26 00:46:50,836 [ scc.git] DEBUG 2 files changed, 42 insertions(+), 1 deletion(-)
2025-03-26 00:46:50,839 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:51,002 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-03-26 00:46:51,003 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d328a0cbb5b49cd63929a8a6c6cf7a89a925d005'
2025-03-26 00:46:51,014 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-03-26 00:46:51,018 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 534 (get strings from omero.cmd.ERR and omero.CmdError correctly) d328a0cbb5b49cd63929a8a6c6cf7a89a925d005'
2025-03-26 00:46:51,437 [ scc.git] DEBUG Auto-merging omeroweb/webclient/webclient_gateway.py
2025-03-26 00:46:51,437 [ scc.git] DEBUG Auto-merging omeroweb/webgateway/marshal.py
2025-03-26 00:46:51,439 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-03-26 00:46:51,444 [ scc.git] DEBUG omeroweb/webclient/webclient_gateway.py | 2 +-
2025-03-26 00:46:51,444 [ scc.git] DEBUG omeroweb/webgateway/marshal.py | 4 ++--
2025-03-26 00:46:51,444 [ scc.git] DEBUG 2 files changed, 3 insertions(+), 3 deletions(-)
2025-03-26 00:46:51,447 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:51,607 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-03-26 00:46:51,608 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...30278b64bb39134a3f1101b600d4a82256e6eaeb'
2025-03-26 00:46:51,619 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-03-26 00:46:51,623 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 595 (linkify supports urls that include {}[] characters) 30278b64bb39134a3f1101b600d4a82256e6eaeb'
2025-03-26 00:46:51,716 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-03-26 00:46:51,720 [ scc.git] DEBUG omeroweb/webclient/static/webclient/javascript/ome.webclient.actions.js | 2 +-
2025-03-26 00:46:51,720 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-03-26 00:46:51,860 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:52,018 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-03-26 00:46:52,020 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3aae48f586d7b412538a45b34ddc471a26a286e8'
2025-03-26 00:46:52,031 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-03-26 00:46:52,035 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 596 (Linkify can parse anchor tag) 3aae48f586d7b412538a45b34ddc471a26a286e8'
2025-03-26 00:46:52,321 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-03-26 00:46:52,325 [ scc.git] DEBUG .../webclient/javascript/ome.webclient.actions.js | 26 ++++++++++++++++++++--
2025-03-26 00:46:52,325 [ scc.git] DEBUG 1 file changed, 24 insertions(+), 2 deletions(-)
2025-03-26 00:46:52,328 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:52,523 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-03-26 00:46:52,524 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...9119372e9fef8cab0e212f02685c8715a3307539'
2025-03-26 00:46:52,535 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-03-26 00:46:52,539 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 602 (Inherit all annotations) 9119372e9fef8cab0e212f02685c8715a3307539'
2025-03-26 00:46:52,700 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-03-26 00:46:52,705 [ scc.git] DEBUG omeroweb/webclient/static/webclient/css/dusty.css | 1 -
2025-03-26 00:46:52,706 [ scc.git] DEBUG .../javascript/ome.right_panel_comments_pane.js | 134 +++++++++++++++++++--
2025-03-26 00:46:52,706 [ scc.git] DEBUG .../javascript/ome.right_panel_fileanns_pane.js | 80 +++++++++++-
2025-03-26 00:46:52,706 [ scc.git] DEBUG .../javascript/ome.right_panel_mapanns_pane.js | 6 +-
2025-03-26 00:46:52,706 [ scc.git] DEBUG .../javascript/ome.right_panel_ratings_pane.js | 33 ++++-
2025-03-26 00:46:52,706 [ scc.git] DEBUG .../javascript/ome.right_panel_tags_pane.js | 92 ++++++++++++--
2025-03-26 00:46:52,706 [ scc.git] DEBUG .../webclient/annotations/comments_underscore.html | 58 +++++++--
2025-03-26 00:46:52,706 [ scc.git] DEBUG .../webclient/annotations/fileanns_underscore.html | 81 ++++++++-----
2025-03-26 00:46:52,706 [ scc.git] DEBUG .../webclient/annotations/mapanns_underscore.html | 4 +
2025-03-26 00:46:52,706 [ scc.git] DEBUG .../webclient/annotations/ratings_underscore.html | 4 +-
2025-03-26 00:46:52,706 [ scc.git] DEBUG .../webclient/annotations/tags_underscore.html | 30 +++--
2025-03-26 00:46:52,706 [ scc.git] DEBUG 11 files changed, 447 insertions(+), 76 deletions(-)
2025-03-26 00:46:52,776 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:52,931 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-03-26 00:46:52,932 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...15e1289cb1c1533c8606b9c9f745d1f24575bb7d'
2025-03-26 00:46:52,944 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-03-26 00:46:52,950 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 604 (Right panel perf) 15e1289cb1c1533c8606b9c9f745d1f24575bb7d'
2025-03-26 00:46:53,579 [ scc.git] DEBUG Auto-merging omeroweb/webclient/views.py
2025-03-26 00:46:53,580 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-03-26 00:46:53,587 [ scc.git] DEBUG omeroweb/webclient/controller/container.py | 66 ++++++++++------------
2025-03-26 00:46:53,588 [ scc.git] DEBUG .../webclient/annotations/annotations_share.html | 12 +---
2025-03-26 00:46:53,588 [ scc.git] DEBUG omeroweb/webclient/views.py | 51 -----------------
2025-03-26 00:46:53,588 [ scc.git] DEBUG 3 files changed, 31 insertions(+), 98 deletions(-)
2025-03-26 00:46:53,591 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:53,758 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-03-26 00:46:53,760 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b360c3125f9471bf4001447f35c732507c2f2022'
2025-03-26 00:46:53,771 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-03-26 00:46:53,775 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 606 (Fix issues related to images with very high channel count) b360c3125f9471bf4001447f35c732507c2f2022'
2025-03-26 00:46:54,012 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-03-26 00:46:54,016 [ scc.git] DEBUG .../webgateway/static/webgateway/js/ome.viewport.js | 17 +++++++++++++++--
2025-03-26 00:46:54,016 [ scc.git] DEBUG 1 file changed, 15 insertions(+), 2 deletions(-)
2025-03-26 00:46:54,019 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:54,188 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-03-26 00:46:54,189 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...06446bf912b361c22e46c5a0678b3146b91e7e26'
2025-03-26 00:46:54,202 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-03-26 00:46:54,206 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 612 (Allow top_links to wrap if too many for space) 06446bf912b361c22e46c5a0678b3146b91e7e26'
2025-03-26 00:46:54,361 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-03-26 00:46:54,365 [ scc.git] DEBUG .../webgateway/static/webgateway/css/ome.body.css | 2 ++
2025-03-26 00:46:54,365 [ scc.git] DEBUG .../webgateway/static/webgateway/css/ome.header.css | 21 +++++++++++----------
2025-03-26 00:46:54,365 [ scc.git] DEBUG 2 files changed, 13 insertions(+), 10 deletions(-)
2025-03-26 00:46:54,441 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:54,609 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-03-26 00:46:54,610 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...a8c190ba1c823672143ab90d77020d652e2c084d'
2025-03-26 00:46:54,621 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-03-26 00:46:54,626 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 613 (externalInfo display) a8c190ba1c823672143ab90d77020d652e2c084d'
2025-03-26 00:46:54,661 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-03-26 00:46:54,665 [ scc.git] DEBUG .../webclient/annotations/includes/toolbar.html | 42 ++++++++++++++++------
2025-03-26 00:46:54,666 [ scc.git] DEBUG .../webclient/annotations/metadata_general.html | 38 ++++++++++++++------
2025-03-26 00:46:54,666 [ scc.git] DEBUG 2 files changed, 60 insertions(+), 20 deletions(-)
2025-03-26 00:46:54,862 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:55,030 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-03-26 00:46:55,031 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...da14d11b161eb8aa90a6e4729758ea504d5914e3'
2025-03-26 00:46:55,043 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-03-26 00:46:55,048 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 614 (CodeQL workflow updates) da14d11b161eb8aa90a6e4729758ea504d5914e3'
2025-03-26 00:46:55,070 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-03-26 00:46:55,073 [ scc.git] DEBUG .github/workflows/codeql-analysis.yml | 55 +++++++----------------------------
2025-03-26 00:46:55,073 [ scc.git] DEBUG 1 file changed, 11 insertions(+), 44 deletions(-)
2025-03-26 00:46:55,283 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:55,460 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-03-26 00:46:55,461 [ scc.git] DEBUG Calling 'git submodule update'
2025-03-26 00:46:55,504 [ scc.git] DEBUG Get sha1 of %s
2025-03-26 00:46:55,505 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-03-26 00:46:55,510 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-03-26 00:46:55,552 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-03-26 00:46:55,562 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fc7ecc8f070> has no local changes
2025-03-26 00:46:55,562 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web
Excluded PRs:
- PR 535 will-moore 'Initial working browser history' (stage: draft)
- PR 168 stick 'Changes to nginx @maintenance handler' (status: failure)
Already up to date.
Merged PRs:
- PR 527 will-moore 'Add some initial CSP settings to test'
- PR 534 will-moore 'get strings from omero.cmd.ERR and omero.CmdError correctly'
- PR 595 sukunis 'linkify supports urls that include {}[] characters'
- PR 596 sukunis 'Linkify can parse anchor tag'
- PR 602 Tom-TBT 'Inherit all annotations'
- PR 604 will-moore 'Right panel perf'
- PR 606 knabar 'Fix issues related to images with very high channel count'
- PR 612 will-moore 'Allow top_links to wrap if too many for space'
- PR 613 will-moore 'externalInfo display'
- PR 614 sbesson 'CodeQL workflow updates'
Generated by OMERO-python-superbuild-push#354 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/354/)'
2025-03-26 00:46:55,574 [ scc.git] DEBUG [detached HEAD 3a14b1b2c] merge master -Dorg -Ssuccess-only
2025-03-26 00:46:55,574 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2025-03-26 00:46:55,574 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-03-26 00:46:55,628 [ scc.config] DEBUG Found submodule.omero-dropbox.url
2025-03-26 00:46:55,713 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:55,873 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-03-26 00:46:55,888 [ scc.config] DEBUG Found submodule.omero-marshal.url
2025-03-26 00:46:56,126 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:56,292 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-03-26 00:46:56,305 [ scc.config] DEBUG Found submodule.omero-py.url
2025-03-26 00:46:56,545 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:56,718 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-03-26 00:46:56,730 [ scc.config] DEBUG Found submodule.omero-scripts.url
2025-03-26 00:46:56,970 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:57,157 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-03-26 00:46:57,169 [ scc.config] DEBUG Found submodule.omero-web.url
2025-03-26 00:46:57,410 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-03-26 00:46:57,576 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-03-26 00:46:57,585 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-03-26 00:46:57,618 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fc7ee028ca0> has local changes
2025-03-26 00:46:57,619 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-python-superbuild
Already up to date.
Repository: ome/omero-dropbox
Already up to date.
Merged PRs:
- PR 16 joshmoore 'Review all instances of whitelist/blacklist'
Repository: ome/omero-marshal
Excluded PRs:
- PR 84 joshmoore 'New JSON-LD context-based version' (stage: draft)
- PR 34 chris-allan 'Initial support for Event' (exclude comment)
- PR 33 chris-allan 'Encode/Decode Experimenters with ExperimenterGroup' (exclude comment)
Already up to date.
Merged PRs:
- PR 69 will-moore 'Roi encoder allows Shape None'
Repository: ome/omero-py
Excluded PRs:
- PR 450 multimeric 'Add model stubs' (user: multimeric)
- PR 443 sbesson 'Gateway tests: remove logic downloading public DV files for testing' (label: exclude)
- PR 427 Rdornier 'Add fileset folder creation' (status: action_required)
- PR 396 joshmoore 'Config property for passing environment variables (see #395)' (status: failure)
Already up to date.
Merged PRs:
- PR 199 joshmoore 'user: allow setting default group'
- PR 266 joshmoore 'errors: use raise_error from cli plugins'
- PR 299 joshmoore 'Add parents and children to omero obj'
- PR 332 jburel 'Build conda'
- PR 387 will-moore 'Numpy pixels type'
- PR 391 joshmoore 'Add jstack command'
- PR 408 jburel 'remove deprecated method'
- PR 445 sbesson 'Remove numpy<2 capping'
- PR 454 sbesson 'Remove all usage of sha library in favor of hashlib'
Conflicting PRs (not included):
- PR 453 will-moore 'getObject() and getExternalInfo() load externalInfo'
Repository: ome/omero-scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Already up to date.
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Repository: ome/omero-web
Excluded PRs:
- PR 535 will-moore 'Initial working browser history' (stage: draft)
- PR 168 stick 'Changes to nginx @maintenance handler' (status: failure)
Already up to date.
Merged PRs:
- PR 527 will-moore 'Add some initial CSP settings to test'
- PR 534 will-moore 'get strings from omero.cmd.ERR and omero.CmdError correctly'
- PR 595 sukunis 'linkify supports urls that include {}[] characters'
- PR 596 sukunis 'Linkify can parse anchor tag'
- PR 602 Tom-TBT 'Inherit all annotations'
- PR 604 will-moore 'Right panel perf'
- PR 606 knabar 'Fix issues related to images with very high channel count'
- PR 612 will-moore 'Allow top_links to wrap if too many for space'
- PR 613 will-moore 'externalInfo display'
- PR 614 sbesson 'CodeQL workflow updates'
Generated by OMERO-python-superbuild-push#354 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/354/)'
2025-03-26 00:46:57,632 [ scc.git] DEBUG [detached HEAD 297240a] merge master -Dorg -Ssuccess-only
2025-03-26 00:46:57,632 [ scc.git] DEBUG 6 files changed, 10 insertions(+), 10 deletions(-)
2025-03-26 00:46:57,632 [ scc.merge] INFO Repository: ome/omero-python-superbuild
2025-03-26 00:46:57,632 [ scc.merge] INFO Already up to date.
2025-03-26 00:46:57,632 [ scc.merge] INFO
2025-03-26 00:46:57,632 [ scc.merge] INFO
2025-03-26 00:46:57,633 [ scc.merge] INFO Repository: ome/omero-dropbox
2025-03-26 00:46:57,633 [ scc.merge] INFO Already up to date.
2025-03-26 00:46:57,633 [ scc.merge] INFO
2025-03-26 00:46:57,633 [ scc.merge] INFO Merged PRs:
2025-03-26 00:46:57,633 [ scc.merge] INFO - PR 16 joshmoore 'Review all instances of whitelist/blacklist'
2025-03-26 00:46:57,633 [ scc.merge] INFO
2025-03-26 00:46:57,633 [ scc.merge] INFO Repository: ome/omero-marshal
2025-03-26 00:46:57,633 [ scc.merge] INFO Excluded PRs:
2025-03-26 00:46:57,633 [ scc.merge] INFO - PR 84 joshmoore 'New JSON-LD context-based version' (stage: draft)
2025-03-26 00:46:57,633 [ scc.merge] INFO - PR 34 chris-allan 'Initial support for Event' (exclude comment)
2025-03-26 00:46:57,633 [ scc.merge] INFO - PR 33 chris-allan 'Encode/Decode Experimenters with ExperimenterGroup' (exclude comment)
2025-03-26 00:46:57,633 [ scc.merge] INFO Already up to date.
2025-03-26 00:46:57,633 [ scc.merge] INFO
2025-03-26 00:46:57,633 [ scc.merge] INFO Merged PRs:
2025-03-26 00:46:57,633 [ scc.merge] INFO - PR 69 will-moore 'Roi encoder allows Shape None'
2025-03-26 00:46:57,633 [ scc.merge] INFO
2025-03-26 00:46:57,633 [ scc.merge] INFO Repository: ome/omero-py
2025-03-26 00:46:57,633 [ scc.merge] INFO Excluded PRs:
2025-03-26 00:46:57,633 [ scc.merge] INFO - PR 450 multimeric 'Add model stubs' (user: multimeric)
2025-03-26 00:46:57,633 [ scc.merge] INFO - PR 443 sbesson 'Gateway tests: remove logic downloading public DV files for testing' (label: exclude)
2025-03-26 00:46:57,633 [ scc.merge] INFO - PR 427 Rdornier 'Add fileset folder creation' (status: action_required)
2025-03-26 00:46:57,633 [ scc.merge] INFO - PR 396 joshmoore 'Config property for passing environment variables (see #395)' (status: failure)
2025-03-26 00:46:57,633 [ scc.merge] INFO Already up to date.
2025-03-26 00:46:57,633 [ scc.merge] INFO
2025-03-26 00:46:57,633 [ scc.merge] INFO Merged PRs:
2025-03-26 00:46:57,633 [ scc.merge] INFO - PR 199 joshmoore 'user: allow setting default group'
2025-03-26 00:46:57,633 [ scc.merge] INFO - PR 266 joshmoore 'errors: use raise_error from cli plugins'
2025-03-26 00:46:57,633 [ scc.merge] INFO - PR 299 joshmoore 'Add parents and children to omero obj'
2025-03-26 00:46:57,633 [ scc.merge] INFO - PR 332 jburel 'Build conda'
2025-03-26 00:46:57,633 [ scc.merge] INFO - PR 387 will-moore 'Numpy pixels type'
2025-03-26 00:46:57,633 [ scc.merge] INFO - PR 391 joshmoore 'Add jstack command'
2025-03-26 00:46:57,633 [ scc.merge] INFO - PR 408 jburel 'remove deprecated method'
2025-03-26 00:46:57,634 [ scc.merge] INFO - PR 445 sbesson 'Remove numpy<2 capping'
2025-03-26 00:46:57,634 [ scc.merge] INFO - PR 454 sbesson 'Remove all usage of sha library in favor of hashlib'
2025-03-26 00:46:57,634 [ scc.merge] INFO
2025-03-26 00:46:57,634 [ scc.merge] INFO Conflicting PRs (not included):
2025-03-26 00:46:57,634 [ scc.merge] INFO - PR 453 will-moore 'getObject() and getExternalInfo() load externalInfo'
2025-03-26 00:46:57,634 [ scc.merge] INFO
2025-03-26 00:46:57,634 [ scc.merge] INFO Repository: ome/omero-scripts
2025-03-26 00:46:57,634 [ scc.merge] INFO Excluded PRs:
2025-03-26 00:46:57,634 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
2025-03-26 00:46:57,634 [ scc.merge] INFO - PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
2025-03-26 00:46:57,634 [ scc.merge] INFO Already up to date.
2025-03-26 00:46:57,634 [ scc.merge] INFO
2025-03-26 00:46:57,634 [ scc.merge] INFO Merged PRs:
2025-03-26 00:46:57,634 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-03-26 00:46:57,634 [ scc.merge] INFO
2025-03-26 00:46:57,634 [ scc.merge] INFO Conflicting PRs (not included):
2025-03-26 00:46:57,634 [ scc.merge] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-03-26 00:46:57,634 [ scc.merge] INFO
2025-03-26 00:46:57,634 [ scc.merge] INFO Repository: ome/omero-web
2025-03-26 00:46:57,634 [ scc.merge] INFO Excluded PRs:
2025-03-26 00:46:57,634 [ scc.merge] INFO - PR 535 will-moore 'Initial working browser history' (stage: draft)
2025-03-26 00:46:57,634 [ scc.merge] INFO - PR 168 stick 'Changes to nginx @maintenance handler' (status: failure)
2025-03-26 00:46:57,634 [ scc.merge] INFO Already up to date.
2025-03-26 00:46:57,634 [ scc.merge] INFO
2025-03-26 00:46:57,634 [ scc.merge] INFO Merged PRs:
2025-03-26 00:46:57,634 [ scc.merge] INFO - PR 527 will-moore 'Add some initial CSP settings to test'
2025-03-26 00:46:57,634 [ scc.merge] INFO - PR 534 will-moore 'get strings from omero.cmd.ERR and omero.CmdError correctly'
2025-03-26 00:46:57,634 [ scc.merge] INFO - PR 595 sukunis 'linkify supports urls that include {}[] characters'
2025-03-26 00:46:57,634 [ scc.merge] INFO - PR 596 sukunis 'Linkify can parse anchor tag'
2025-03-26 00:46:57,634 [ scc.merge] INFO - PR 602 Tom-TBT 'Inherit all annotations'
2025-03-26 00:46:57,634 [ scc.merge] INFO - PR 604 will-moore 'Right panel perf'
2025-03-26 00:46:57,634 [ scc.merge] INFO - PR 606 knabar 'Fix issues related to images with very high channel count'
2025-03-26 00:46:57,635 [ scc.merge] INFO - PR 612 will-moore 'Allow top_links to wrap if too many for space'
2025-03-26 00:46:57,635 [ scc.merge] INFO - PR 613 will-moore 'externalInfo display'
2025-03-26 00:46:57,635 [ scc.merge] INFO - PR 614 sbesson 'CodeQL workflow updates'
2025-03-26 00:46:57,635 [ scc.merge] INFO
2025-03-26 00:46:57,635 [ scc.merge] DEBUG Cleaning remote branches created for merging
2025-03-26 00:46:57,635 [ scc.git] DEBUG Calling 'git remote'
2025-03-26 00:46:57,639 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-dropbox
2025-03-26 00:46:57,639 [ scc.git] DEBUG Calling 'git remote'
2025-03-26 00:46:57,643 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2025-03-26 00:46:57,643 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-marshal
2025-03-26 00:46:57,643 [ scc.git] DEBUG Calling 'git remote'
2025-03-26 00:46:57,647 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2025-03-26 00:46:57,647 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-py
2025-03-26 00:46:57,647 [ scc.git] DEBUG Calling 'git remote'
2025-03-26 00:46:57,651 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2025-03-26 00:46:57,651 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-scripts
2025-03-26 00:46:57,651 [ scc.git] DEBUG Calling 'git remote'
2025-03-26 00:46:57,655 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
2025-03-26 00:46:57,655 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-web
2025-03-26 00:46:57,655 [ scc.git] DEBUG Calling 'git remote'
2025-03-26 00:46:57,659 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push
Update component versions
Downloading https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-build-build/lastSuccessfulBuild/artifact/omero-blitz/build/distributions/omero-blitz-5.8.1-python.zip ...
Traceback (most recent call last):
File "/home/omero/workspace/OMERO-python-superbuild-push/omero-py/setup.py", line 150, in <module>
download_blitz_target()
File "/home/omero/workspace/OMERO-python-superbuild-push/omero-py/setup.py", line 83, in download_blitz_target
resp = urlopen(loc)
File "/usr/lib64/python3.9/urllib/request.py", line 214, in urlopen
return opener.open(url, data, timeout)
File "/usr/lib64/python3.9/urllib/request.py", line 523, in open
response = meth(req, response)
File "/usr/lib64/python3.9/urllib/request.py", line 632, in http_response
response = self.parent.error(
File "/usr/lib64/python3.9/urllib/request.py", line 561, in error
return self._call_chain(*args)
File "/usr/lib64/python3.9/urllib/request.py", line 494, in _call_chain
result = func(*args)
File "/usr/lib64/python3.9/urllib/request.py", line 641, in http_error_default
raise HTTPError(req.full_url, code, msg, hdrs, fp)
urllib.error.HTTPError: HTTP Error 404: Not Found
Downloading https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-build-build/lastSuccessfulBuild/artifact/omero-blitz/build/distributions/omero-blitz-5.8.1-python.zip ...
Traceback (most recent call last):
File "/home/omero/workspace/OMERO-python-superbuild-push/omero-py/setup.py", line 150, in <module>
download_blitz_target()
File "/home/omero/workspace/OMERO-python-superbuild-push/omero-py/setup.py", line 83, in download_blitz_target
resp = urlopen(loc)
File "/usr/lib64/python3.9/urllib/request.py", line 214, in urlopen
return opener.open(url, data, timeout)
File "/usr/lib64/python3.9/urllib/request.py", line 523, in open
response = meth(req, response)
File "/usr/lib64/python3.9/urllib/request.py", line 632, in http_response
response = self.parent.error(
File "/usr/lib64/python3.9/urllib/request.py", line 561, in error
return self._call_chain(*args)
File "/usr/lib64/python3.9/urllib/request.py", line 494, in _call_chain
result = func(*args)
File "/usr/lib64/python3.9/urllib/request.py", line 641, in http_error_default
raise HTTPError(req.full_url, code, msg, hdrs, fp)
urllib.error.HTTPError: HTTP Error 404: Not Found
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Commit all component version changes
Entering 'omero-dropbox'
Entering 'omero-marshal'
Entering 'omero-py'
Entering 'omero-scripts'
Entering 'omero-web'
Entering 'omero-dropbox'
HEAD detached from 01fa0c5
nothing to commit, working tree clean
Entering 'omero-marshal'
HEAD detached from 6d44f66
nothing to commit, working tree clean
Entering 'omero-py'
HEAD detached from af8e5b4f
nothing to commit, working tree clean
Entering 'omero-scripts'
HEAD detached from 950b28b
nothing to commit, working tree clean
Entering 'omero-web'
HEAD detached from 4b979f847
nothing to commit, working tree clean
HEAD detached from 9a566eb
nothing to commit, working tree clean
2025-03-26 00:47:26,892 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-python-superbuild/tree/merge_ci
[Pipeline] archiveArtifacts (hide)
Archiving artifacts
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: SUCCESS
![[Jenkins]](/jenkins/static/f8f0d1dd/images/svgs/logo.svg){kind=logo}
