10:26:57 Started by user devspace
10:26:57 Running as SYSTEM
10:26:57 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
10:26:57 [OMERO-server] $ /bin/bash -xe /tmp/jenkins533461616180340324.sh
10:26:57 + source /home/settings.env
10:26:57 ++ OMERO_DB_HOST=pg
10:26:57 ++ OMERO_DB_USER=postgres
10:26:57 ++ OMERO_DB_PASS=
10:26:57 ++ OMERO_ROOT_PASS=omero
10:26:57 ++ OMERO_DATA_DIR=/OMERO
10:26:57 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
10:26:57 + OMERO_DB_NAME=OMERO-server
10:26:57 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
10:26:57 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
10:26:57 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
10:26:57 + OMERO_DATA_DIR=/home/omero/omero-server-data
10:26:57 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
10:26:57 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
10:26:57 ++ deactivate nondestructive
10:26:57 ++ '[' -n '' ']'
10:26:57 ++ '[' -n '' ']'
10:26:57 ++ hash -r
10:26:57 ++ '[' -n '' ']'
10:26:57 ++ unset VIRTUAL_ENV
10:26:57 ++ unset VIRTUAL_ENV_PROMPT
10:26:57 ++ '[' '!' nondestructive = nondestructive ']'
10:26:57 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
10:26:57 ++ export VIRTUAL_ENV
10:26:57 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:26:57 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:26:57 ++ export PATH
10:26:57 ++ '[' -n '' ']'
10:26:57 ++ '[' -z '' ']'
10:26:57 ++ _OLD_VIRTUAL_PS1=
10:26:57 ++ PS1='(.venv3) '
10:26:57 ++ export PS1
10:26:57 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
10:26:57 ++ export VIRTUAL_ENV_PROMPT
10:26:57 ++ hash -r
10:26:57 + omero admin stop
10:26:57 /tmp/jenkins533461616180340324.sh: line 10: omero: command not found
10:26:57 + echo not running
10:26:57 not running
10:26:57 + sleep 5
10:27:02 + deactivate
10:27:02 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
10:27:02 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:27:02 + export PATH
10:27:02 + unset _OLD_VIRTUAL_PATH
10:27:02 + '[' -n '' ']'
10:27:02 + hash -r
10:27:02 + '[' -n '' ']'
10:27:02 + unset VIRTUAL_ENV
10:27:02 + unset VIRTUAL_ENV_PROMPT
10:27:02 + '[' '!' '' = nondestructive ']'
10:27:02 + unset -f deactivate
10:27:02 + rm -rf /home/omero/workspace/OMERO-server/.venv3
10:27:03 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
10:27:06 + '[' false = true ']'
10:27:06 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
10:27:06 Skipping PURGE_DATA:CleanDbAndRepo
10:27:06 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.4-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.21.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.29.2.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
10:27:08 Copied 1 artifact from "OMERO-build" build number 469
10:27:08 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 462
10:27:08 Copied 2 artifacts from "OMERO-build-build" build number 492
10:27:08 Copied 1 artifact from "OMERO-zarr-pixel-buffer-build" build number 1
10:27:08 [OMERO-server] $ /bin/bash -xe /tmp/jenkins2938105020386493971.sh
10:27:08 + source /home/settings.env
10:27:08 ++ OMERO_DB_HOST=pg
10:27:08 ++ OMERO_DB_USER=postgres
10:27:08 ++ OMERO_DB_PASS=
10:27:08 ++ OMERO_ROOT_PASS=omero
10:27:08 ++ OMERO_DATA_DIR=/OMERO
10:27:08 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
10:27:08 + OMERO_DB_NAME=OMERO-server
10:27:08 + OMERO_DATA_DIR=/home/omero/omero-server-data
10:27:08 + mkdir -p /home/omero/omero-server-data
10:27:08 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
10:27:08 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
10:27:08 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
10:27:08 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
10:27:08 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
10:27:08 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
10:27:08 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
10:27:08 ++ ls OMERO.server-5.6.3-569-bce9091b12-ice36-b469.zip
10:27:08 + ZIP=OMERO.server-5.6.3-569-bce9091b12-ice36-b469.zip
10:27:08 + '[' '!' -z '' ']'
10:27:08 + DIST=OMERO.server-5.6.3-569-bce9091b12-ice36-b469
10:27:08 + unzip OMERO.server-5.6.3-569-bce9091b12-ice36-b469.zip
10:27:08 Archive: OMERO.server-5.6.3-569-bce9091b12-ice36-b469.zip
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/blitz/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/grid/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/profiles/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/templates/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/templates/error/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/templates/grid/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/scripts/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/scripts/luts/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/scripts/luts/janelia/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/scripts/luts/matplotlib/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/scripts/luts/ncsa_paledit/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/scripts/luts/seaborn/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/scripts/luts/wcif/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/scripts/omero/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/scripts/omero/analysis_scripts/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/scripts/omero/annotation_scripts/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/scripts/omero/export_scripts/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/scripts/omero/figure_scripts/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/scripts/omero/import_scripts/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/scripts/omero/util_scripts/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/server/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/share/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/share/licenses/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/misc/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO3A__1/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO3A__10/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO3A__11/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO3A__2/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO3A__3/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO3A__4/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO3A__5/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO3A__6/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO3A__7/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO3A__8/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO3A__9/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO3__4/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO3__5/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO3__6/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO3__7/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO4.1__0/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO4.2__0/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO4.2__0/t/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO4.3__0/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO4.4__0/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO4__0/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.0__0/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.1__1/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.2__0/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.3__0/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.4DEV__1/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.4DEV__2/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.4DEV__3/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.4__0/
10:27:08 creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/var/
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/LICENSE.txt
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/backup.cfg
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/blitz/mail-senders.example
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/blitz/mail-server.example
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/build.properties
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/env.bat
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/env.sh
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/hibernate.properties
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/ice.config
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/logback-cli.xml
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/logback-indexing-cli.xml
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/logback-indexing.xml
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/logback.xml
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/mime.types
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/node1.cfg
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/node2.cfg
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/omero.properties
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/profiles/psql
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/rollover.cfg
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/templates/Windows.cfg
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/templates/error/maintainance.html
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/templates/grid/README
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/templates/grid/default.xml
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/templates/grid/templates.xml
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/templates/grid/windefault.xml
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/templates/ice.config
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/templates/internal.cfg
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/templates/master.cfg
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/templates/robot.template
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/testdropbox.config
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/history.rst
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/OMEZarrReader.jar
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/accessors-smart.jar
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/activation.jar
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/aggdesigner-algorithm.jar
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/aircompressor.jar
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/antlr.jar
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/aopalliance.jar
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/apiguardian-api.jar
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/asm.jar
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/avatica-core.jar
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/avatica-metrics.jar
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/aws-java-sdk-core.jar
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/aws-java-sdk-kms.jar
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/aws-java-sdk-s3.jar
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/base.jar
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/batik-anim.jar
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/batik-awt-util.jar
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/batik-bridge.jar
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/batik-codec.jar
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/batik-constants.jar
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/batik-css.jar
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/batik-dom.jar
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/batik-ext.jar
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/batik-gvt.jar
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/batik-i18n.jar
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/batik-parser.jar
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/batik-script.jar
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/batik-shared-resources.jar
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/batik-svg-dom.jar
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/batik-svggen.jar
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/batik-transcoder.jar
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/batik-util.jar
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/batik-xml.jar
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/btm.jar
10:27:08 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/calcite-core.jar
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10:27:10 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
10:27:10 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
10:27:10 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
10:27:10 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
10:27:10 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
10:27:10 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
10:27:10 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
10:27:10 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
10:27:10 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
10:27:10 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
10:27:10 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
10:27:10 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
10:27:10 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
10:27:10 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
10:27:10 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
10:27:10 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
10:27:10 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
10:27:10 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
10:27:10 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
10:27:10 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
10:27:10 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
10:27:10 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
10:27:10 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.4__0/psql-footer.sql
10:27:10 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.4__0/psql-header.sql
10:27:10 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.4__0/schema.sql
10:27:10 inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.4__0/views.sql
10:27:10 + rm -f OMERO.server-5.6.3-569-bce9091b12-ice36-b469.zip
10:27:10 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-569-bce9091b12-ice36-b469 /home/omero/workspace/OMERO-server/OMERO.server
10:27:10 ++ ls omero-zarr-pixel-buffer-0.5.1-SNAPSHOT.jar
10:27:10 + JAR=omero-zarr-pixel-buffer-0.5.1-SNAPSHOT.jar
10:27:10 ++ basename omero-zarr-pixel-buffer-0.5.1-SNAPSHOT.jar
10:27:10 + JAR_NAME=omero-zarr-pixel-buffer-0.5.1-SNAPSHOT.jar
10:27:10 + mv /home/omero/workspace/OMERO-server/omero-zarr-pixel-buffer-0.5.1-SNAPSHOT.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/omero-zarr-pixel-buffer-0.5.1-SNAPSHOT.jar
10:27:10 + wget --no-hsts -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
10:27:10 --2025-07-16 10:27:10-- https://repo1.maven.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
10:27:10 Resolving repo1.maven.org (repo1.maven.org)... 146.75.72.209, 2a04:4e42:82::209
10:27:10 Connecting to repo1.maven.org (repo1.maven.org)|146.75.72.209|:443... connected.
10:27:10 HTTP request sent, awaiting response... 200 OK
10:27:10 Length: 889211 (868K) [application/java-archive]
10:27:10 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’
10:27:10
10:27:10 0K .......... .......... .......... .......... .......... 5% 3.84M 0s
10:27:10 50K .......... .......... .......... .......... .......... 11% 5.98M 0s
10:27:10 100K .......... .......... .......... .......... .......... 17% 20.9M 0s
10:27:10 150K .......... .......... .......... .......... .......... 23% 23.4M 0s
10:27:10 200K .......... .......... .......... .......... .......... 28% 8.24M 0s
10:27:11 250K .......... .......... .......... .......... .......... 34% 31.6M 0s
10:27:11 300K .......... .......... .......... .......... .......... 40% 56.3M 0s
10:27:11 350K .......... .......... .......... .......... .......... 46% 23.5M 0s
10:27:11 400K .......... .......... .......... .......... .......... 51% 39.9M 0s
10:27:11 450K .......... .......... .......... .......... .......... 57% 9.66M 0s
10:27:11 500K .......... .......... .......... .......... .......... 63% 25.0M 0s
10:27:11 550K .......... .......... .......... .......... .......... 69% 124M 0s
10:27:11 600K .......... .......... .......... .......... .......... 74% 18.1M 0s
10:27:11 650K .......... .......... .......... .......... .......... 80% 42.4M 0s
10:27:11 700K .......... .......... .......... .......... .......... 86% 9.70M 0s
10:27:11 750K .......... .......... .......... .......... .......... 92% 35.4M 0s
10:27:11 800K .......... .......... .......... .......... .......... 97% 20.8M 0s
10:27:11 850K .......... ........ 100% 228M=0.06s
10:27:11
10:27:11 2025-07-16 10:27:11 (14.9 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’ saved [889211/889211]
10:27:11
10:27:11 + wget --no-hsts -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/dev/zarr/jzarr/0.4.2/jzarr-0.4.2.jar
10:27:11 --2025-07-16 10:27:11-- https://repo1.maven.org/maven2/dev/zarr/jzarr/0.4.2/jzarr-0.4.2.jar
10:27:11 Resolving repo1.maven.org (repo1.maven.org)... 146.75.72.209, 2a04:4e42:82::209
10:27:11 Connecting to repo1.maven.org (repo1.maven.org)|146.75.72.209|:443... connected.
10:27:11 HTTP request sent, awaiting response... 200 OK
10:27:11 Length: 73309 (72K) [application/java-archive]
10:27:11 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jzarr-0.4.2.jar’
10:27:11
10:27:11 0K .......... .......... .......... .......... .......... 69% 3.84M 0s
10:27:11 50K .......... .......... . 100% 62.6M=0.01s
10:27:11
10:27:11 2025-07-16 10:27:11 (5.36 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jzarr-0.4.2.jar’ saved [73309/73309]
10:27:11
10:27:11 + wget --no-hsts -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/org/lasersonlab/s3fs/2.2.3/s3fs-2.2.3.jar
10:27:11 --2025-07-16 10:27:11-- https://repo1.maven.org/maven2/org/lasersonlab/s3fs/2.2.3/s3fs-2.2.3.jar
10:27:11 Resolving repo1.maven.org (repo1.maven.org)... 146.75.72.209, 2a04:4e42:82::209
10:27:11 Connecting to repo1.maven.org (repo1.maven.org)|146.75.72.209|:443... connected.
10:27:11 HTTP request sent, awaiting response... 200 OK
10:27:11 Length: 63303 (62K) [application/java-archive]
10:27:11 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3fs-2.2.3.jar’
10:27:11
10:27:11 0K .......... .......... .......... .......... .......... 80% 4.48M 0s
10:27:11 50K .......... . 100% 6.54M=0.01s
10:27:11
10:27:11 2025-07-16 10:27:11 (4.76 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3fs-2.2.3.jar’ saved [63303/63303]
10:27:11
10:27:11 + wget --no-hsts -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/amazonaws/aws-java-sdk-s3/1.12.659/aws-java-sdk-s3-1.12.659.jar
10:27:11 --2025-07-16 10:27:11-- https://repo1.maven.org/maven2/com/amazonaws/aws-java-sdk-s3/1.12.659/aws-java-sdk-s3-1.12.659.jar
10:27:11 Resolving repo1.maven.org (repo1.maven.org)... 146.75.72.209, 2a04:4e42:82::209
10:27:11 Connecting to repo1.maven.org (repo1.maven.org)|146.75.72.209|:443... connected.
10:27:11 HTTP request sent, awaiting response... 200 OK
10:27:11 Length: 1271272 (1.2M) [application/java-archive]
10:27:11 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3-1.12.659.jar’
10:27:11
10:27:11 0K .......... .......... .......... .......... .......... 4% 4.17M 0s
10:27:11 50K .......... .......... .......... .......... .......... 8% 5.21M 0s
10:27:11 100K .......... .......... .......... .......... .......... 12% 21.1M 0s
10:27:11 150K .......... .......... .......... .......... .......... 16% 16.0M 0s
10:27:11 200K .......... .......... .......... .......... .......... 20% 9.60M 0s
10:27:11 250K .......... .......... .......... .......... .......... 24% 29.9M 0s
10:27:11 300K .......... .......... .......... .......... .......... 28% 63.0M 0s
10:27:11 350K .......... .......... .......... .......... .......... 32% 17.2M 0s
10:27:11 400K .......... .......... .......... .......... .......... 36% 9.25M 0s
10:27:11 450K .......... .......... .......... .......... .......... 40% 145M 0s
10:27:11 500K .......... .......... .......... .......... .......... 44% 14.2M 0s
10:27:11 550K .......... .......... .......... .......... .......... 48% 123M 0s
10:27:11 600K .......... .......... .......... .......... .......... 52% 41.4M 0s
10:27:11 650K .......... .......... .......... .......... .......... 56% 9.27M 0s
10:27:11 700K .......... .......... .......... .......... .......... 60% 30.3M 0s
10:27:11 750K .......... .......... .......... .......... .......... 64% 13.8M 0s
10:27:11 800K .......... .......... .......... .......... .......... 68% 124M 0s
10:27:11 850K .......... .......... .......... .......... .......... 72% 10.1M 0s
10:27:11 900K .......... .......... .......... .......... .......... 76% 29.4M 0s
10:27:11 950K .......... .......... .......... .......... .......... 80% 22.9M 0s
10:27:11 1000K .......... .......... .......... .......... .......... 84% 35.7M 0s
10:27:11 1050K .......... .......... .......... .......... .......... 88% 9.33M 0s
10:27:11 1100K .......... .......... .......... .......... .......... 92% 29.6M 0s
10:27:11 1150K .......... .......... .......... .......... .......... 96% 23.4M 0s
10:27:11 1200K .......... .......... .......... .......... . 100% 30.6M=0.08s
10:27:11
10:27:11 2025-07-16 10:27:11 (15.4 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3-1.12.659.jar’ saved [1271272/1271272]
10:27:11
10:27:11 + MS_ZIP=omero-ms-image-region-0.10.0_11.zip
10:27:11 + wget -q https://github.com/ome/omero-ms-image-region/releases/download/2024.08.13/omero-ms-image-region-0.10.0_11.zip
10:27:18 + unzip omero-ms-image-region-0.10.0_11.zip
10:27:18 Archive: omero-ms-image-region-0.10.0_11.zip
10:27:18 creating: omero-ms-image-region-0.10.0/
10:27:18 inflating: omero-ms-image-region-0.10.0/MemoFileRegenerationReadMe.md
10:27:18 inflating: omero-ms-image-region-0.10.0/regen-memo-files.sh
10:27:18 inflating: omero-ms-image-region-0.10.0/logback-memoizer.xml
10:27:18 inflating: omero-ms-image-region-0.10.0/memo_regenerator.sql
10:27:18 creating: omero-ms-image-region-0.10.0/conf/
10:27:18 inflating: omero-ms-image-region-0.10.0/conf/logback.xml
10:27:18 inflating: omero-ms-image-region-0.10.0/conf/config.yaml
10:27:18 inflating: omero-ms-image-region-0.10.0/memofile-regen-status.sh
10:27:18 inflating: omero-ms-image-region-0.10.0/omero-ms-image-region.service
10:27:18 creating: omero-ms-image-region-0.10.0/lib/
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/omero-ms-image-region-0.10.0.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/simpleclient_vertx-0.6.0.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/omero-ms-core-0.9.0.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/brave-instrumentation-http-5.6.8.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/brave-5.6.8.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/brave-http-4.13.6.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/zipkin-sender-okhttp3-2.10.0.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/omero-zarr-pixel-buffer-0.4.1.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/omero-blitz-5.7.4.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/omero-server-5.6.12.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/omero-renderer-5.5.17.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/omero-romio-5.7.7.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/omero-common-5.6.7.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/metrics-logback-3.0.2.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/logback-classic-1.3.14.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/log4j-over-slf4j-1.7.32.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/vertx-web-3.8.1.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/vertx-config-yaml-3.8.1.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/vertx-config-3.8.1.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/vertx-micrometer-metrics-3.8.5.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/micrometer-registry-prometheus-1.3.0.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/OMEZarrReader-0.5.2.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/collector-0.12.0.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/simpleclient_hotspot-0.8.0.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/picocli-4.1.4.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/univocity-parsers-2.8.3.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/icegrid-3.6.5.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/gson-2.8.6.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/caffeine-3.1.8.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/jzarr-0.4.2.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/s3fs-2.2.3.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/aws-java-sdk-s3-1.12.659.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/simpleclient_common-0.7.0.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/simpleclient-0.8.0.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/brave-core-4.13.6.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/zipkin-reporter-2.10.0.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/zipkin-2.15.0.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/omero-model-5.6.15.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/formats-gpl-7.3.1.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/formats-bsd-7.3.1.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/formats-api-7.3.1.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/ome-xml-6.3.6.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/ome-codecs-1.0.3.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/metakit-5.3.7.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/ome-poi-5.3.9.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/ome-common-6.0.22.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/minio-5.0.2.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/okhttp-3.14.2.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/logback-core-1.3.14.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/cdm-core-5.3.3.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/jcl-over-slf4j-1.7.5.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/calcite-core-1.20.0.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/udunits-5.3.3.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/httpservices-5.3.3.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/spring-security-ldap-4.2.4.RELEASE.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/spring-ldap-core-2.3.2.RELEASE.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/avatica-core-1.15.0.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/json-path-2.4.0.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/avatica-metrics-1.15.0.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/metrics-graphite-3.0.2.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/metrics-jvm-3.0.2.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/metrics-core-3.0.2.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/hibernate-search-3.4.2.Final.jar
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10:27:18 inflating: omero-ms-image-region-0.10.0/lib/bufr-3.0.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/hibernate-commons-annotations-3.2.0.Final.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/hibernate-search-analyzers-3.4.2.Final.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/jxrlib-all-0.2.4.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/native-lib-loader-2.4.0.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/solr-analysis-extras-3.1.0.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/solr-core-3.1.0.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/solr-solrj-3.1.0.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/slf4j-api-2.0.9.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/lettuce-core-5.2.0.RELEASE.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/vertx-jdbc-client-3.8.1.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/kaitai-struct-runtime-0.8.jar
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10:27:18 inflating: omero-ms-image-region-0.10.0/lib/vertx-web-common-3.8.1.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/vertx-auth-common-3.8.1.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/vertx-bridge-common-3.8.1.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/vertx-sql-common-3.8.1.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/vertx-core-3.8.5.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/aws-java-sdk-kms-1.12.659.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/aws-java-sdk-core-1.12.659.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/jmespath-java-1.12.659.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/jackson-dataformat-cbor-2.14.2.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/jackson-databind-2.14.2.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/jackson-annotations-2.14.2.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/esri-geometry-api-2.2.0.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/jackson-core-2.14.2.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/jackson-dataformat-yaml-2.14.2.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/micrometer-core-1.3.0.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/HdrHistogram-2.1.11.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/javax.activation-1.2.0.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/httpmime-4.5.9.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/google-http-client-xml-1.20.0.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/google-http-client-1.20.0.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/httpclient-4.5.13.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/serializer-2.7.3.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/xalan-2.7.3.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/commons-dbcp2-2.6.0.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/spring-jms-4.3.14.RELEASE.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/spring-messaging-4.3.14.RELEASE.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/spring-orm-4.3.14.RELEASE.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/spring-jdbc-4.3.14.RELEASE.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/spring-tx-4.3.14.RELEASE.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/spring-security-core-4.2.4.RELEASE.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/spring-context-support-4.3.22.RELEASE.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/spring-context-4.3.22.RELEASE.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/spring-aop-4.3.22.RELEASE.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/spring-beans-4.3.22.RELEASE.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/spring-expression-4.3.22.RELEASE.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/spring-core-4.3.22.RELEASE.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/commons-logging-1.2.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/snakeyaml-2.0.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/postgresql-42.2.29.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/calcite-linq4j-1.20.0.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/guava-32.0.0-jre.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/checker-qual-3.37.0.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/error_prone_annotations-2.21.1.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/jblosc-1.0.1.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/tika-core-1.5.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/jsr305-3.0.2.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/okio-1.17.2.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/glacier2-3.6.5.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/ice-3.6.5.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/netty-handler-proxy-4.1.42.Final.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/netty-codec-http2-4.1.42.Final.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/netty-codec-http-4.1.42.Final.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/netty-handler-4.1.42.Final.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/netty-resolver-dns-4.1.42.Final.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/netty-codec-socks-4.1.42.Final.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/netty-codec-dns-4.1.42.Final.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/netty-codec-4.1.42.Final.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/netty-transport-4.1.42.Final.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/netty-buffer-4.1.42.Final.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/netty-resolver-4.1.42.Final.jar
10:27:18 inflating: omero-ms-image-region-0.10.0/lib/netty-common-4.1.42.Final.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/reactor-core-3.3.0.RELEASE.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/c3p0-0.9.5.4.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/LatencyUtils-2.0.3.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/httpcore-4.4.13.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/commons-codec-1.15.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/btm-3.0.0-mk1.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/commons-collections4-4.1.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/javax.mail-1.6.2.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/java-image-scaling-0.8.6.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/jhdf5-19.04.1.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/base-18.09.0.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/commons-io-2.7.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/joda-time-2.12.2.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/jdom2-2.0.6.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/protobuf-java-3.9.1.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/jcommander-1.78.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/re2j-1.3.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/junit-4.12.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/jna-4.2.2.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/reactive-streams-1.0.3.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/mchange-commons-java-0.2.15.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/commons-lang3-3.10.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/sketches-core-0.9.0.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/janino-3.0.11.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/commons-compiler-3.0.11.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/activation-1.1.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/filters-2.0.235.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/kryo-5.4.0.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/specification-6.3.6.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/ome-jai-0.1.4.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/aircompressor-0.21.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/hamcrest-core-1.3.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/aopalliance-1.0.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/commons-pool2-2.6.1.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/memory-0.9.0.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/failureaccess-1.0.1.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/j2objc-annotations-2.8.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/reflectasm-1.11.9.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/objenesis-3.3.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/minlog-1.3.1.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/xpp3-1.1.4c.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/antlr-2.7.6.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/commons-collections-3.1.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/dom4j-1.6.1.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/hibernate-jpa-2.0-api-1.0.1.Final.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/jta-1.1.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/lucene-smartcn-3.1.0.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/lucene-stempel-3.1.0.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/lucene-misc-3.1.0.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/lucene-spellchecker-3.1.0.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/lucene-analyzers-3.1.0.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/lucene-highlighter-3.1.0.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/lucene-memory-3.1.0.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/lucene-spatial-3.1.0.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/lucene-core-3.1.0.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/ome-mdbtools-5.3.3.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/sqlite-jdbc-3.28.0.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/turbojpeg-7.3.1.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/jgoodies-forms-1.7.2.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/perf4j-0.9.16.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/json-20231013.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/xml-apis-1.4.01.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/jgoodies-common-1.7.0.jar
10:27:19 inflating: omero-ms-image-region-0.10.0/lib/solr-commons-csv-3.1.0.jar
10:27:19 creating: omero-ms-image-region-0.10.0/bin/
10:27:19 inflating: omero-ms-image-region-0.10.0/bin/memoregenerator.bat
10:27:19 inflating: omero-ms-image-region-0.10.0/bin/memoregenerator
10:27:19 inflating: omero-ms-image-region-0.10.0/bin/omero-ms-image-region
10:27:19 inflating: omero-ms-image-region-0.10.0/bin/omero-ms-image-region.bat
10:27:19 inflating: omero-ms-image-region-0.10.0/README.md
10:27:19 + rm -f omero-ms-image-region-0.10.0_11.zip
10:27:19 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
10:27:19 ++ deactivate nondestructive
10:27:19 ++ '[' -n '' ']'
10:27:19 ++ '[' -n '' ']'
10:27:19 ++ hash -r
10:27:19 ++ '[' -n '' ']'
10:27:19 ++ unset VIRTUAL_ENV
10:27:19 ++ unset VIRTUAL_ENV_PROMPT
10:27:19 ++ '[' '!' nondestructive = nondestructive ']'
10:27:19 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
10:27:19 ++ export VIRTUAL_ENV
10:27:19 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:27:19 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:27:19 ++ export PATH
10:27:19 ++ '[' -n '' ']'
10:27:19 ++ '[' -z '' ']'
10:27:19 ++ _OLD_VIRTUAL_PS1=
10:27:19 ++ PS1='(.venv3) '
10:27:19 ++ export PS1
10:27:19 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
10:27:19 ++ export VIRTUAL_ENV_PROMPT
10:27:19 ++ hash -r
10:27:19 + pip install -U pip
10:27:19 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
10:27:19 Collecting pip
10:27:19 Using cached pip-25.1.1-py3-none-any.whl (1.8 MB)
10:27:19 Installing collected packages: pip
10:27:19 Attempting uninstall: pip
10:27:19 Found existing installation: pip 22.3.1
10:27:20 Uninstalling pip-22.3.1:
10:27:20 Successfully uninstalled pip-22.3.1
10:27:20 Successfully installed pip-25.1.1
10:27:20 WARNING: There was an error checking the latest version of pip.
10:27:21 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
10:27:21 Collecting zeroc-ice==3.6.5
10:27:21 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
10:27:23 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 20.8 MB/s eta 0:00:00
10:27:23 Installing collected packages: zeroc-ice
10:27:24 Successfully installed zeroc-ice-3.6.5
10:27:24 + pip install markdown
10:27:24 Collecting markdown
10:27:24 Using cached markdown-3.8.2-py3-none-any.whl.metadata (5.1 kB)
10:27:24 Using cached markdown-3.8.2-py3-none-any.whl (106 kB)
10:27:24 Installing collected packages: markdown
10:27:25 Successfully installed markdown-3.8.2
10:27:25 + pip install reportlab
10:27:25 Collecting reportlab
10:27:25 Using cached reportlab-4.4.2-py3-none-any.whl.metadata (1.8 kB)
10:27:25 Collecting pillow>=9.0.0 (from reportlab)
10:27:25 Using cached pillow-11.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
10:27:25 Collecting charset-normalizer (from reportlab)
10:27:25 Using cached charset_normalizer-3.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (35 kB)
10:27:25 Using cached reportlab-4.4.2-py3-none-any.whl (2.0 MB)
10:27:25 Using cached pillow-11.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.6 MB)
10:27:25 Using cached charset_normalizer-3.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (147 kB)
10:27:25 Installing collected packages: pillow, charset-normalizer, reportlab
10:27:26
10:27:26 Successfully installed charset-normalizer-3.4.2 pillow-11.3.0 reportlab-4.4.2
10:27:26 + pip install pyarrow
10:27:27 Collecting pyarrow
10:27:27 Using cached pyarrow-20.0.0-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (3.3 kB)
10:27:27 Using cached pyarrow-20.0.0-cp311-cp311-manylinux_2_28_x86_64.whl (42.3 MB)
10:27:27 Installing collected packages: pyarrow
10:27:29 Successfully installed pyarrow-20.0.0
10:27:29 + pip install omego
10:27:29 Collecting omego
10:27:29 Using cached omego-0.7.0-py3-none-any.whl
10:27:29 Collecting future (from omego)
10:27:29 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
10:27:29 Collecting yaclifw>=0.1.1 (from omego)
10:27:29 Using cached yaclifw-0.2.0-py3-none-any.whl
10:27:29 Collecting six (from yaclifw>=0.1.1->omego)
10:27:29 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
10:27:29 Using cached future-1.0.0-py3-none-any.whl (491 kB)
10:27:29 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
10:27:29 Installing collected packages: six, future, yaclifw, omego
10:27:30
10:27:30 Successfully installed future-1.0.0 omego-0.7.0 six-1.17.0 yaclifw-0.2.0
10:27:30 + pip install tables
10:27:30 Collecting tables
10:27:30 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB)
10:27:30 Collecting numpy>=1.20.0 (from tables)
10:27:30 Using cached numpy-2.3.1-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (62 kB)
10:27:30 Collecting numexpr>=2.6.2 (from tables)
10:27:30 Using cached numexpr-2.11.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
10:27:30 Collecting packaging (from tables)
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10:27:30 Collecting py-cpuinfo (from tables)
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10:27:31 Collecting blosc2>=2.3.0 (from tables)
10:27:31 Using cached blosc2-3.5.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (6.9 kB)
10:27:31 Collecting typing-extensions>=4.4.0 (from tables)
10:27:31 Using cached typing_extensions-4.14.1-py3-none-any.whl.metadata (3.0 kB)
10:27:31 Collecting ndindex (from blosc2>=2.3.0->tables)
10:27:31 Using cached ndindex-1.10.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.6 kB)
10:27:31 Collecting msgpack (from blosc2>=2.3.0->tables)
10:27:31 Using cached msgpack-1.1.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.4 kB)
10:27:31 Collecting platformdirs (from blosc2>=2.3.0->tables)
10:27:31 Using cached platformdirs-4.3.8-py3-none-any.whl.metadata (12 kB)
10:27:31 Collecting requests (from blosc2>=2.3.0->tables)
10:27:31 Using cached requests-2.32.4-py3-none-any.whl.metadata (4.9 kB)
10:27:31 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.4.2)
10:27:31 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables)
10:27:31 Using cached idna-3.10-py3-none-any.whl.metadata (10 kB)
10:27:31 Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables)
10:27:31 Using cached urllib3-2.5.0-py3-none-any.whl.metadata (6.5 kB)
10:27:31 Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables)
10:27:31 Using cached certifi-2025.7.14-py3-none-any.whl.metadata (2.4 kB)
10:27:31 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
10:27:31 Using cached blosc2-3.5.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (4.4 MB)
10:27:31 Using cached numexpr-2.11.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (401 kB)
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10:27:31 Installing collected packages: py-cpuinfo, urllib3, typing-extensions, platformdirs, packaging, numpy, ndindex, msgpack, idna, certifi, requests, numexpr, blosc2, tables
10:27:34
10:27:34 Successfully installed blosc2-3.5.1 certifi-2025.7.14 idna-3.10 msgpack-1.1.1 ndindex-1.10.0 numexpr-2.11.0 numpy-2.3.1 packaging-25.0 platformdirs-4.3.8 py-cpuinfo-9.0.0 requests-2.32.4 tables-3.10.2 typing-extensions-4.14.1 urllib3-2.5.0
10:27:34 + pip install jinja2
10:27:35 Collecting jinja2
10:27:35 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
10:27:35 Collecting MarkupSafe>=2.0 (from jinja2)
10:27:35 Using cached MarkupSafe-3.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.0 kB)
10:27:35 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
10:27:35 Using cached MarkupSafe-3.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (23 kB)
10:27:35 Installing collected packages: MarkupSafe, jinja2
10:27:35
10:27:35 Successfully installed MarkupSafe-3.0.2 jinja2-3.1.6
10:27:35 + pip install boto3
10:27:36 Collecting boto3
10:27:36 Downloading boto3-1.39.6-py3-none-any.whl.metadata (6.6 kB)
10:27:36 Collecting botocore<1.40.0,>=1.39.6 (from boto3)
10:27:36 Downloading botocore-1.39.6-py3-none-any.whl.metadata (5.7 kB)
10:27:36 Collecting jmespath<2.0.0,>=0.7.1 (from boto3)
10:27:36 Using cached jmespath-1.0.1-py3-none-any.whl.metadata (7.6 kB)
10:27:36 Collecting s3transfer<0.14.0,>=0.13.0 (from boto3)
10:27:36 Using cached s3transfer-0.13.0-py3-none-any.whl.metadata (1.7 kB)
10:27:36 Collecting python-dateutil<3.0.0,>=2.1 (from botocore<1.40.0,>=1.39.6->boto3)
10:27:36 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
10:27:36 Requirement already satisfied: urllib3!=2.2.0,<3,>=1.25.4 in ./.venv3/lib64/python3.11/site-packages (from botocore<1.40.0,>=1.39.6->boto3) (2.5.0)
10:27:36 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil<3.0.0,>=2.1->botocore<1.40.0,>=1.39.6->boto3) (1.17.0)
10:27:37 Downloading boto3-1.39.6-py3-none-any.whl (139 kB)
10:27:37 Downloading botocore-1.39.6-py3-none-any.whl (13.8 MB)
10:27:37 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 13.8/13.8 MB 23.0 MB/s eta 0:00:00
10:27:37 Using cached jmespath-1.0.1-py3-none-any.whl (20 kB)
10:27:37 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
10:27:37 Using cached s3transfer-0.13.0-py3-none-any.whl (85 kB)
10:27:37 Installing collected packages: python-dateutil, jmespath, botocore, s3transfer, boto3
10:27:38
10:27:38 Successfully installed boto3-1.39.6 botocore-1.39.6 jmespath-1.0.1 python-dateutil-2.9.0.post0 s3transfer-0.13.0
10:27:38 + pip install smart-open
10:27:39 Collecting smart-open
10:27:39 Using cached smart_open-7.3.0.post1-py3-none-any.whl.metadata (24 kB)
10:27:39 Collecting wrapt (from smart-open)
10:27:39 Using cached wrapt-1.17.2-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.4 kB)
10:27:39 Using cached smart_open-7.3.0.post1-py3-none-any.whl (61 kB)
10:27:39 Using cached wrapt-1.17.2-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (83 kB)
10:27:39 Installing collected packages: wrapt, smart-open
10:27:39
10:27:39 Successfully installed smart-open-7.3.0.post1 wrapt-1.17.2
10:27:39 + pip install omero-py
10:27:39 Collecting omero-py
10:27:39 Using cached omero_py-5.21.0-py3-none-any.whl.metadata (6.5 kB)
10:27:39 Collecting urllib3<2 (from omero-py)
10:27:39 Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB)
10:27:40 Collecting appdirs (from omero-py)
10:27:40 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
10:27:40 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
10:27:40 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.3.1)
10:27:40 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (11.3.0)
10:27:40 Collecting PyYAML (from omero-py)
10:27:40 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
10:27:40 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
10:27:40 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.32.4)
10:27:40 Collecting portalocker (from omero-py)
10:27:40 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
10:27:40 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.2)
10:27:40 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.10)
10:27:40 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2025.7.14)
10:27:40 Using cached omero_py-5.21.0-py3-none-any.whl (2.8 MB)
10:27:40 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
10:27:40 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
10:27:40 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
10:27:40 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB)
10:27:40 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, omero-py
10:27:40 Attempting uninstall: urllib3
10:27:40 Found existing installation: urllib3 2.5.0
10:27:40 Uninstalling urllib3-2.5.0:
10:27:40 Successfully uninstalled urllib3-2.5.0
10:27:42
10:27:42 Successfully installed PyYAML-6.0.2 appdirs-1.4.4 omero-py-5.21.0 portalocker-3.2.0 urllib3-1.26.20
10:27:42 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
10:27:43 Collecting omero-metadata
10:27:43 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-w6z17mal/omero-metadata_a53e99fa4f034571a06d690a0792e8e8
10:27:43 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-w6z17mal/omero-metadata_a53e99fa4f034571a06d690a0792e8e8
10:27:44 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit bad83f133169337ecddc46cc48c654307b61eeec
10:27:44 Installing build dependencies: started
10:27:45 Installing build dependencies: finished with status 'done'
10:27:45 Getting requirements to build wheel: started
10:27:45 Getting requirements to build wheel: finished with status 'done'
10:27:45 Preparing metadata (pyproject.toml): started
10:27:45 Preparing metadata (pyproject.toml): finished with status 'done'
10:27:45 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.21.0)
10:27:45 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.2)
10:27:45 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6)
10:27:45 Collecting pandas (from omero-metadata)
10:27:45 Using cached pandas-2.3.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (91 kB)
10:27:46 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.20)
10:27:46 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
10:27:46 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
10:27:46 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.3.1)
10:27:46 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (11.3.0)
10:27:46 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
10:27:46 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.4)
10:27:46 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0)
10:27:46 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.2)
10:27:46 Requirement already satisfied: python-dateutil>=2.8.2 in ./.venv3/lib64/python3.11/site-packages (from pandas->omero-metadata) (2.9.0.post0)
10:27:46 Collecting pytz>=2020.1 (from pandas->omero-metadata)
10:27:46 Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB)
10:27:46 Collecting tzdata>=2022.7 (from pandas->omero-metadata)
10:27:46 Using cached tzdata-2025.2-py2.py3-none-any.whl.metadata (1.4 kB)
10:27:46 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
10:27:46 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.2)
10:27:46 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.10)
10:27:46 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2025.7.14)
10:27:46 Using cached pandas-2.3.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (12.4 MB)
10:27:46 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB)
10:27:46 Using cached tzdata-2025.2-py2.py3-none-any.whl (347 kB)
10:27:46 Building wheels for collected packages: omero-metadata
10:27:46 Building wheel for omero-metadata (pyproject.toml): started
10:27:46 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
10:27:46 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39282 sha256=b8f0e78574cd52c07a92bf89fb560ddf8fac3f038920ba8d2b6024bca8f0c858
10:27:46 Stored in directory: /tmp/pip-ephem-wheel-cache-1ix6l3hf/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
10:27:46 Successfully built omero-metadata
10:27:46 Installing collected packages: pytz, tzdata, pandas, omero-metadata
10:27:51
10:27:51 Successfully installed omero-metadata-0.13.1.dev0 pandas-2.3.1 pytz-2025.2 tzdata-2025.2
10:27:51 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
10:27:51 Collecting omero-cli-render
10:27:51 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-weojsfo1/omero-cli-render_8ec8db9894e84271ad0acff82c0c9d86
10:27:51 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-weojsfo1/omero-cli-render_8ec8db9894e84271ad0acff82c0c9d86
10:27:52 Running command git checkout -b merge_ci --track origin/merge_ci
10:27:52 Switched to a new branch 'merge_ci'
10:27:52 branch 'merge_ci' set up to track 'origin/merge_ci'.
10:27:52 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit e3a0c81b7864b14e50901800005354203499341a
10:27:52 Installing build dependencies: started
10:27:53 Installing build dependencies: finished with status 'done'
10:27:53 Getting requirements to build wheel: started
10:27:54 Getting requirements to build wheel: finished with status 'done'
10:27:54 Preparing metadata (pyproject.toml): started
10:27:54 Preparing metadata (pyproject.toml): finished with status 'done'
10:27:54 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.2)
10:27:54 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.21.0)
10:27:54 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.20)
10:27:54 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
10:27:54 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
10:27:54 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.3.1)
10:27:54 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (11.3.0)
10:27:54 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
10:27:54 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.4)
10:27:54 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0)
10:27:54 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.2)
10:27:54 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.10)
10:27:54 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2025.7.14)
10:27:54 Building wheels for collected packages: omero-cli-render
10:27:54 Building wheel for omero-cli-render (pyproject.toml): started
10:27:54 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
10:27:54 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19694 sha256=99dc306976d75267c09e5ed542abfe08caa7c87e05991796dd9e804df3362765
10:27:54 Stored in directory: /tmp/pip-ephem-wheel-cache-z_makzhh/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
10:27:54 Successfully built omero-cli-render
10:27:54 Installing collected packages: omero-cli-render
10:27:54 Successfully installed omero-cli-render-0.8.2.dev0
10:27:54 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
10:27:55 Collecting omero-cli-duplicate
10:27:55 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-_pkhr7t4/omero-cli-duplicate_67d098ab51eb4606adb11bebb9c81142
10:27:55 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-_pkhr7t4/omero-cli-duplicate_67d098ab51eb4606adb11bebb9c81142
10:27:55 Running command git checkout -b merge_ci --track origin/merge_ci
10:27:56 Switched to a new branch 'merge_ci'
10:27:56 branch 'merge_ci' set up to track 'origin/merge_ci'.
10:27:56 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 84b349ae9f203dcbd3499fd20b027964fbc3372f
10:27:56 Installing build dependencies: started
10:27:57 Installing build dependencies: finished with status 'done'
10:27:57 Getting requirements to build wheel: started
10:27:57 Getting requirements to build wheel: finished with status 'done'
10:27:57 Preparing metadata (pyproject.toml): started
10:27:57 Preparing metadata (pyproject.toml): finished with status 'done'
10:27:57 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.21.0)
10:27:57 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.20)
10:27:57 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
10:27:57 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
10:27:57 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.3.1)
10:27:57 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (11.3.0)
10:27:57 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.2)
10:27:57 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
10:27:57 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.4)
10:27:57 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0)
10:27:57 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.2)
10:27:57 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.10)
10:27:57 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2025.7.14)
10:27:57 Building wheels for collected packages: omero-cli-duplicate
10:27:57 Building wheel for omero-cli-duplicate (pyproject.toml): started
10:27:57 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
10:27:57 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11541 sha256=51658f29b7639ea15d0672bb862e1c0dc72c9e6adb6c97629a738920cca9292d
10:27:57 Stored in directory: /tmp/pip-ephem-wheel-cache-cio94m4u/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
10:27:57 Successfully built omero-cli-duplicate
10:27:57 Installing collected packages: omero-cli-duplicate
10:27:58 Successfully installed omero-cli-duplicate-0.4.1.dev0
10:27:58 + pip install omero-certificates
10:27:59 Collecting omero-certificates
10:27:59 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
10:27:59 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.21.0)
10:27:59 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.20)
10:27:59 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
10:27:59 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
10:27:59 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.3.1)
10:27:59 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (11.3.0)
10:27:59 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.2)
10:27:59 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
10:27:59 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.4)
10:27:59 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0)
10:27:59 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.2)
10:27:59 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.10)
10:27:59 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2025.7.14)
10:27:59 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
10:27:59 Installing collected packages: omero-certificates
10:27:59 Successfully installed omero-certificates-0.4.0
10:27:59 + for x in *.tar.gz
10:27:59 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
10:27:59 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
10:27:59 Installing build dependencies: started
10:28:00 Installing build dependencies: finished with status 'done'
10:28:00 Getting requirements to build wheel: started
10:28:00 Getting requirements to build wheel: finished with status 'done'
10:28:00 Preparing metadata (pyproject.toml): started
10:28:01 Preparing metadata (pyproject.toml): finished with status 'done'
10:28:01 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.21.0)
10:28:01 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.20)
10:28:01 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
10:28:01 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
10:28:01 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.3.1)
10:28:01 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (11.3.0)
10:28:01 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.2)
10:28:01 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
10:28:01 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.4)
10:28:01 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0)
10:28:01 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.2)
10:28:01 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.10)
10:28:01 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2025.7.14)
10:28:01 Building wheels for collected packages: omero-dropbox
10:28:01 Building wheel for omero-dropbox (pyproject.toml): started
10:28:01 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
10:28:01 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49138 sha256=9fd7cc673cb276cd6274972833b23392b69d5ebe2031c18cd4646c3367c3b5d2
10:28:01 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
10:28:01 Successfully built omero-dropbox
10:28:01 Installing collected packages: omero-dropbox
10:28:01 Successfully installed omero-dropbox-5.7.1.dev0
10:28:01 + for x in *.tar.gz
10:28:01 + pip install -U omero_marshal-0.9.1.dev0.tar.gz
10:28:02 Processing ./omero_marshal-0.9.1.dev0.tar.gz
10:28:02 Installing build dependencies: started
10:28:07 Installing build dependencies: finished with status 'done'
10:28:07 Getting requirements to build wheel: started
10:28:07 Getting requirements to build wheel: finished with status 'done'
10:28:07 Preparing metadata (pyproject.toml): started
10:28:08 Preparing metadata (pyproject.toml): finished with status 'done'
10:28:08 Building wheels for collected packages: omero_marshal
10:28:08 Building wheel for omero_marshal (pyproject.toml): started
10:28:08 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
10:28:08 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88126 sha256=d27cd50d87a3e62fddc113f6a63718c69a1c22958fb8b89e6c801828ef9d13fd
10:28:08 Stored in directory: /home/omero/.cache/pip/wheels/c6/fe/20/4909beb8cad01183b3ea19e12252f8ddec6c22448a9830df18
10:28:08 Successfully built omero_marshal
10:28:08 Installing collected packages: omero_marshal
10:28:08 Successfully installed omero_marshal-0.9.1.dev0
10:28:08 + for x in *.tar.gz
10:28:08 + pip install -U omero_py-5.21.1.dev0.tar.gz
10:28:09 Processing ./omero_py-5.21.1.dev0.tar.gz
10:28:09 Installing build dependencies: started
10:28:10 Installing build dependencies: finished with status 'done'
10:28:10 Getting requirements to build wheel: started
10:28:10 Getting requirements to build wheel: finished with status 'done'
10:28:10 Preparing metadata (pyproject.toml): started
10:28:10 Preparing metadata (pyproject.toml): finished with status 'done'
10:28:10 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (1.26.20)
10:28:10 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (1.4.4)
10:28:10 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (1.0.0)
10:28:10 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (2.3.1)
10:28:10 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (11.3.0)
10:28:10 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (6.0.2)
10:28:10 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (3.6.5)
10:28:10 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (2.32.4)
10:28:10 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (3.2.0)
10:28:10 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.21.1.dev0) (3.4.2)
10:28:10 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.21.1.dev0) (3.10)
10:28:10 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.21.1.dev0) (2025.7.14)
10:28:10 Building wheels for collected packages: omero-py
10:28:10 Building wheel for omero-py (pyproject.toml): started
10:28:12 Building wheel for omero-py (pyproject.toml): finished with status 'done'
10:28:12 Created wheel for omero-py: filename=omero_py-5.21.1.dev0-py3-none-any.whl size=2783499 sha256=81fe507fc45555b5362d60dbfa53c4606a715b118145062fc0958e06e86e7e60
10:28:12 Stored in directory: /home/omero/.cache/pip/wheels/32/8a/68/256ffa196397e2ec55e537fc96a9b9c4178b3eab623cd87f3d
10:28:12 Successfully built omero-py
10:28:12 Installing collected packages: omero-py
10:28:12 Attempting uninstall: omero-py
10:28:12 Found existing installation: omero-py 5.21.0
10:28:12 Uninstalling omero-py-5.21.0:
10:28:12 Successfully uninstalled omero-py-5.21.0
10:28:14 Successfully installed omero-py-5.21.1.dev0
10:28:14 + for x in *.tar.gz
10:28:14 + pip install -U omero_scripts-5.9.2.dev0.tar.gz
10:28:15 Processing ./omero_scripts-5.9.2.dev0.tar.gz
10:28:15 Installing build dependencies: started
10:28:15 Installing build dependencies: finished with status 'done'
10:28:15 Getting requirements to build wheel: started
10:28:16 Getting requirements to build wheel: finished with status 'done'
10:28:16 Preparing metadata (pyproject.toml): started
10:28:16 Preparing metadata (pyproject.toml): finished with status 'done'
10:28:16 Building wheels for collected packages: omero-scripts
10:28:16 Building wheel for omero-scripts (pyproject.toml): started
10:28:16 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
10:28:16 Created wheel for omero-scripts: filename=omero_scripts-5.9.2.dev0-py3-none-any.whl size=136847 sha256=3700cbf72892e739a386f103fe647de69d5cdbf98371a0beeb2dd66e42d2bd93
10:28:16 Stored in directory: /home/omero/.cache/pip/wheels/e3/db/94/c7ed73401c8459f3935212f514ee953d11b520ca8c20333850
10:28:16 Successfully built omero-scripts
10:28:16 Installing collected packages: omero-scripts
10:28:16 Successfully installed omero-scripts-5.9.2.dev0
10:28:16 + for x in *.tar.gz
10:28:16 + pip install -U omero_web-5.29.2.dev0.tar.gz
10:28:17 Processing ./omero_web-5.29.2.dev0.tar.gz
10:28:17 Installing build dependencies: started
10:28:18 Installing build dependencies: finished with status 'done'
10:28:18 Getting requirements to build wheel: started
10:28:18 Getting requirements to build wheel: finished with status 'done'
10:28:18 Preparing metadata (pyproject.toml): started
10:28:19 Preparing metadata (pyproject.toml): finished with status 'done'
10:28:19 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.2.dev0) (5.21.1.dev0)
10:28:19 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.29.2.dev0)
10:28:19 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl.metadata (23 kB)
10:28:19 Collecting Django<4.3,>=4.2.3 (from omero-web==5.29.2.dev0)
10:28:19 Using cached django-4.2.23-py3-none-any.whl.metadata (4.2 kB)
10:28:19 Collecting django-pipeline (from omero-web==5.29.2.dev0)
10:28:19 Using cached django_pipeline-4.0.0-py3-none-any.whl.metadata (5.8 kB)
10:28:19 Collecting django-cors-headers==3.7.0 (from omero-web==5.29.2.dev0)
10:28:19 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
10:28:19 Collecting django-csp (from omero-web==5.29.2.dev0)
10:28:19 Using cached django_csp-4.0-py3-none-any.whl.metadata (3.6 kB)
10:28:19 Collecting whitenoise>=5.3.0 (from omero-web==5.29.2.dev0)
10:28:19 Using cached whitenoise-6.9.0-py3-none-any.whl.metadata (3.6 kB)
10:28:19 Collecting gunicorn>=19.3 (from omero-web==5.29.2.dev0)
10:28:19 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB)
10:28:19 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.2.dev0) (0.9.1.dev0)
10:28:19 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.2.dev0) (11.3.0)
10:28:19 Requirement already satisfied: pytz in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.2.dev0) (2025.2)
10:28:19 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.2.dev0) (3.2.0)
10:28:19 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.2.dev0) (25.0)
10:28:19 Collecting importlib-resources (from omero-web==5.29.2.dev0)
10:28:19 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
10:28:19 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.29.2.dev0)
10:28:19 Using cached asgiref-3.9.1-py3-none-any.whl.metadata (9.3 kB)
10:28:19 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.29.2.dev0)
10:28:19 Using cached sqlparse-0.5.3-py3-none-any.whl.metadata (3.9 kB)
10:28:19 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.2.dev0) (1.26.20)
10:28:19 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.2.dev0) (1.4.4)
10:28:19 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.2.dev0) (1.0.0)
10:28:19 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.2.dev0) (2.3.1)
10:28:19 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.2.dev0) (6.0.2)
10:28:19 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.2.dev0) (3.6.5)
10:28:19 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.2.dev0) (2.32.4)
10:28:19 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web==5.29.2.dev0) (65.5.1)
10:28:19 Collecting wheel (from django-pipeline->omero-web==5.29.2.dev0)
10:28:19 Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB)
10:28:19 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.2.dev0) (3.4.2)
10:28:19 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.2.dev0) (3.10)
10:28:19 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.2.dev0) (2025.7.14)
10:28:19 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
10:28:19 Using cached django-4.2.23-py3-none-any.whl (8.0 MB)
10:28:19 Using cached asgiref-3.9.1-py3-none-any.whl (23 kB)
10:28:19 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl (28 kB)
10:28:19 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB)
10:28:19 Using cached sqlparse-0.5.3-py3-none-any.whl (44 kB)
10:28:19 Using cached whitenoise-6.9.0-py3-none-any.whl (20 kB)
10:28:19 Using cached django_csp-4.0-py3-none-any.whl (25 kB)
10:28:19 Using cached django_pipeline-4.0.0-py3-none-any.whl (75 kB)
10:28:19 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
10:28:19 Using cached wheel-0.45.1-py3-none-any.whl (72 kB)
10:28:19 Building wheels for collected packages: omero-web
10:28:19 Building wheel for omero-web (pyproject.toml): started
10:28:21 Building wheel for omero-web (pyproject.toml): finished with status 'done'
10:28:21 Created wheel for omero-web: filename=omero_web-5.29.2.dev0-py3-none-any.whl size=2817943 sha256=25efbc42629e0dee8aa4545eb17bd8926b6498206ead4fbe82529f962127a8fe
10:28:21 Stored in directory: /home/omero/.cache/pip/wheels/8b/82/d4/64ba3d9f4efaa51110316831003d98aee03867a3665750278c
10:28:21 Successfully built omero-web
10:28:21 Installing collected packages: whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-csp, django-cors-headers, omero-web
10:28:24
10:28:24 Successfully installed Django-4.2.23 asgiref-3.9.1 concurrent-log-handler-0.9.28 django-cors-headers-3.7.0 django-csp-4.0 django-pipeline-4.0.0 gunicorn-23.0.0 importlib-resources-6.5.2 omero-web-5.29.2.dev0 sqlparse-0.5.3 wheel-0.45.1 whitenoise-6.9.0
10:28:24 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
10:28:24 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
10:28:24 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
10:28:24 --2025-07-16 10:28:24-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
10:28:24 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.109.133, 185.199.108.133, 185.199.111.133, ...
10:28:24 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.109.133|:443... connected.
10:28:24 HTTP request sent, awaiting response... 200 OK
10:28:24 Length: 125072 (122K) [text/plain]
10:28:24 Saving to: ‘Figure_To_Pdf.py’
10:28:24
10:28:24 0K .......... .......... .......... .......... .......... 40% 3.94M 0s
10:28:24 50K .......... .......... .......... .......... .......... 81% 11.5M 0s
10:28:24 100K .......... .......... .. 100% 4.48M=0.02s
10:28:24
10:28:24 2025-07-16 10:28:24 (5.56 MB/s) - ‘Figure_To_Pdf.py’ saved [125072/125072]
10:28:24
10:28:24 + chmod 755 Figure_To_Pdf.py
10:28:24 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
10:28:24 + omero config set omero.db.name OMERO-server
10:28:25 + omero config set omero.db.host pg
10:28:27 + omero config set omero.db.user postgres
10:28:28 + omero config set omero.data.dir /home/omero/omero-server-data
10:28:29 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
10:28:31 + omero config set omero.db.poolsize 25
10:28:32 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
10:28:33 + omero config set omero.security.trustStorePassword changeit
10:28:34 + omero config set omero.mail.config true
10:28:36 + omero config set omero.mail.from qa@openmicroscopy.org.uk
10:28:37 + omero config set omero.mail.host smtp.dundee.ac.uk
10:28:38 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
10:28:39 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
10:28:41 + omero certificates
10:28:42 OpenSSL 3.2.2 4 Jun 2024 (Library: OpenSSL 3.2.2 4 Jun 2024)
10:28:42 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
10:28:42 + '[' false = true ']'
10:28:42 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
10:28:42 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
10:28:42 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
10:28:42 2025-07-16 10:28:42,488 [ omego.db] DEBUG dbcommand => upgrade
10:28:42 2025-07-16 10:28:42,488 [ omego.db] DEBUG dbhost => localhost
10:28:42 2025-07-16 10:28:42,488 [ omego.db] DEBUG dbname => OMERO-server
10:28:42 2025-07-16 10:28:42,488 [ omego.db] DEBUG dbpass => omero
10:28:42 2025-07-16 10:28:42,488 [ omego.db] DEBUG dbuser => omero
10:28:42 2025-07-16 10:28:42,489 [ omego.db] DEBUG rootpass => omero
10:28:42 2025-07-16 10:28:42,489 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
10:28:42 2025-07-16 10:28:42,489 [omego.extern] INFO Executing : omero version
10:28:43 OMERO.py version:
10:28:43 OMERO.server version:
10:28:43 5.6.3-569-bce9091b12-ice36-b469
10:28:43 5.21.1.dev0
10:28:43 2025-07-16 10:28:43,778 [omego.extern] INFO Completed [1.289 s]
10:28:43 2025-07-16 10:28:43,778 [omego.extern] DEBUG Using omero CLI from omero
10:28:43 2025-07-16 10:28:43,778 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
10:28:43 2025-07-16 10:28:43,778 [omego.extern] INFO Running [current environment]: omero config get --show-password
10:28:43 2025-07-16 10:28:43,778 [omego.extern] INFO Executing : omero config get --show-password
10:28:45 2025-07-16 10:28:45,055 [omego.extern] INFO Completed [1.277 s]
10:28:45 2025-07-16 10:28:45,055 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
10:28:45 2025-07-16 10:28:45,055 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
10:28:45 2025-07-16 10:28:45,061 [omego.extern] INFO Completed [0.006 s]
10:28:45 2025-07-16 10:28:45,061 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.9\n'
10:28:45 2025-07-16 10:28:45,061 [ omego.db] INFO psql version: psql (PostgreSQL) 16.9
10:28:45
10:28:45 2025-07-16 10:28:45,061 [omego.extern] INFO Running [current environment]: omero config get --show-password
10:28:45 2025-07-16 10:28:45,061 [omego.extern] INFO Executing : omero config get --show-password
10:28:46 2025-07-16 10:28:46,340 [omego.extern] INFO Completed [1.279 s]
10:28:46 2025-07-16 10:28:46,341 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
10:28:46 2025-07-16 10:28:46,341 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
10:28:46 2025-07-16 10:28:46,351 [omego.extern] INFO Completed [0.010 s]
10:28:46 2025-07-16 10:28:46,351 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.9") at port "5432".\n'
10:28:46 2025-07-16 10:28:46,351 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
10:28:46 2025-07-16 10:28:46,351 [omego.extern] INFO Running [current environment]: omero config get --show-password
10:28:46 2025-07-16 10:28:46,351 [omego.extern] INFO Executing : omero config get --show-password
10:28:47 2025-07-16 10:28:47,582 [omego.extern] INFO Completed [1.231 s]
10:28:47 2025-07-16 10:28:47,582 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
10:28:47 2025-07-16 10:28:47,582 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
10:28:47 2025-07-16 10:28:47,593 [omego.extern] INFO Completed [0.011 s]
10:28:47 2025-07-16 10:28:47,593 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
10:28:47 2025-07-16 10:28:47,593 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
10:28:47 2025-07-16 10:28:47,595 [ omego.db] INFO Database is already at OMERO5.4__0
10:28:47 + export LANG=en_US.UTF-8
10:28:47 + LANG=en_US.UTF-8
10:28:47 + export LANGUAGE=en_US:en
10:28:47 + LANGUAGE=en_US:en
10:28:47 + export LC_ALL=en_US.UTF-8
10:28:47 + LC_ALL=en_US.UTF-8
10:28:47 + BUILD_ID=DONT_KILL_ME
10:28:47 + omero admin start
10:28:52 No descriptor given. Using etc/grid/default.xml
10:29:01 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
10:29:01 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
10:29:01 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
10:29:01 Waiting on startup. Use CTRL-C to exit
10:29:01 + omero admin waitup
10:29:02 Waiting on startup. Use CTRL-C to exit
10:29:02 + omero admin diagnostics
10:29:03
10:29:03 ================================================================================
10:29:03 OMERO Diagnostics (admin)
10:29:03 ================================================================================
10:29:03
10:29:03 Commands: java -version 11.0.25 (/usr/bin/java)
10:29:03 Commands: python -V 3.11.11 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
10:29:03 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
10:29:03 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
10:29:03 Commands: psql --version 16.9 (/usr/bin/psql)
10:29:03 Commands: openssl version 3.2.24 (/usr/bin/openssl)
10:29:03
10:29:03 Component: OMERO.py 5.21.1.dev0
10:29:03 Component: OMERO.server 5.6.3-569-bce9091b12-ice36-b469
10:29:03
10:29:03 Server: icegridnode running
10:29:03 Server: Blitz-0 active (pid = 13396, enabled)
10:29:03 Server: Indexer-0 activating (enabled)
10:29:03 Server: OMERO.Glacier2 active (pid = 13425, enabled)
10:29:03 Server: OMERO.IceStorm active (pid = 13449, enabled)
10:29:03 Server: Processor-0 active (pid = 13432, enabled)
10:29:03 Server: Tables-0 active (pid = 13452, enabled)
10:29:03
10:29:03 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
10:29:03 Log files: Blitz-0.log 32.1 KB errors=0 warnings=1
10:29:03 Log files: DropBox.log n/a
10:29:03 Log files: FileServer.log n/a
10:29:03 Log files: Indexer-0.log 238 B
10:29:03 Log files: MonitorServer.log n/a
10:29:03 Log files: Processor-0.log 735 B
10:29:03 Log files: Tables-0.log 961 B
10:29:03 Log files: TestDropBox.log n/a
10:29:03 Log files: master.err empty
10:29:03 Log files: master.out 30.5 KB
10:29:03 Log files: Total size 0.06 MB
10:29:03
10:29:03
10:29:03 Environment:OMERO_HOME=(unset)
10:29:03 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
10:29:03 Environment:OMERO_NODE=(unset)
10:29:03 Environment:OMERO_MASTER=(unset)
10:29:04 Environment:OMERO_USERDIR=(unset)
10:29:04 Environment:OMERO_TMPDIR=(unset)
10:29:04 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:29:04 Environment:PYTHONPATH=(unset)
10:29:04 Environment:ICE_HOME=/opt/ice-3.6.5
10:29:04 Environment:LD_LIBRARY_PATH=(unset)
10:29:04 Environment:DYLD_LIBRARY_PATH=(unset)
10:29:04
10:29:04 OMERO SSL port:4064
10:29:04 OMERO TCP port:4063
10:29:04 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
10:29:04 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
10:29:04
10:29:04 JVM settings: Blitz-${index} -Xmx7200m
10:29:04 JVM settings: Indexer-${index} -Xmx4800m
10:29:04 JVM settings: PixelData-${index} -Xmx7200m
10:29:04 JVM settings: Repository-${index} -Xmx4800m
10:29:04
10:29:04 Jar: lib/server/formats-api.jar Bio-Formats API 8.3.0-SNAPSHOT 16 July 2025 1a3c75b150ae11f8dfc6f632d1198414d59a1413
10:29:04 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.3.0-SNAPSHOT 16 July 2025 1a3c75b150ae11f8dfc6f632d1198414d59a1413
10:29:04 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.3.0-SNAPSHOT 16 July 2025 1a3c75b150ae11f8dfc6f632d1198414d59a1413
10:29:04 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.2-SNAPSHOT 16 July 2025 b70983cece011fb6557b06cf931c97046fa37c69
10:29:04 Jar: lib/server/ome-common.jar OME Common Java 6.0.27-SNAPSHOT 16 July 2025 b70983cece011fb6557b06cf931c97046fa37c69
10:29:04 Jar: lib/server/ome-jai.jar OME JAI 0.1.6-SNAPSHOT 16 July 2025 b70983cece011fb6557b06cf931c97046fa37c69
10:29:04 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.5-SNAPSHOT 16 July 2025 b70983cece011fb6557b06cf931c97046fa37c69
10:29:04 Jar: lib/server/ome-poi.jar OME POI 5.3.11-SNAPSHOT 16 July 2025 b70983cece011fb6557b06cf931c97046fa37c69
10:29:04 Jar: lib/server/ome-xml.jar OME XML library 6.5.1-SNAPSHOT 16 July 2025 b70983cece011fb6557b06cf931c97046fa37c69
10:29:04 Jar: lib/server/omero-blitz.jar jar 5.8.4-SNAPSHOT
10:29:04 Jar: lib/server/omero-common.jar jar 5.7.4-SNAPSHOT
10:29:04 Jar: lib/server/omero-gateway.jar jar 5.10.4-SNAPSHOT
10:29:04 Jar: lib/server/omero-model.jar jar 5.7.4-SNAPSHOT
10:29:04 Jar: lib/server/omero-renderer.jar jar 5.6.4-SNAPSHOT
10:29:04 Jar: lib/server/omero-romio.jar jar 5.8.4-SNAPSHOT
10:29:04 Jar: lib/server/omero-server.jar jar 5.7.4-SNAPSHOT
10:29:04 Jar: lib/server/omero-zarr-pixel-buffer-0.5.1-SNAPSHOT.jar OMERO Zarr Pixel Buffer 0.5.1-SNAPSHOT ce40b5862f64dde6497b4860b3a02ef8deb2d0e4
10:29:04 + deactivate
10:29:04 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
10:29:04 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:29:04 + export PATH
10:29:04 + unset _OLD_VIRTUAL_PATH
10:29:04 + '[' -n '' ']'
10:29:04 + hash -r
10:29:04 + '[' -n '' ']'
10:29:04 + unset VIRTUAL_ENV
10:29:04 + unset VIRTUAL_ENV_PROMPT
10:29:04 + '[' '!' '' = nondestructive ']'
10:29:04 + unset -f deactivate
10:29:04 Finished: SUCCESS
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