00:35:44Started by upstream project "Trigger" build number 66700:35:44originally caused by:
00:35:44 Started by timer
00:35:44Running as SYSTEM
00:35:44Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
00:35:44The recommended git tool is: NONE
00:35:44No credentials specified
00:35:44 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
00:35:44Fetching changes from the remote Git repository
00:35:44 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
00:35:44Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git00:35:44 > git --version # timeout=10
00:35:44 > git --version # 'git version 2.43.5'
00:35:44 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
00:35:45 > git rev-parse origin/merge_ci^{commit} # timeout=10
00:35:45Checking out Revision 2673f0acff0505f60e65308b92a4b9dd4b699507 (origin/merge_ci)
00:35:45 > git config core.sparsecheckout # timeout=10
00:35:45 > git checkout -f 2673f0acff0505f60e65308b92a4b9dd4b699507 # timeout=10
00:35:45Commit message: "Add version.properties to etc/omero.properties"
00:35:45 > git rev-list --no-walk ba39565ce357d8333d9f82e4ac842fbe260545a0 # timeout=10
00:35:45Cleaning workspace
00:35:45 > git rev-parse --verify HEAD # timeout=10
00:35:45Resetting working tree
00:35:45 > git reset --hard # timeout=10
00:35:45 > git clean -fdx # timeout=10
00:35:45Copied 6 artifacts from "OMERO-python-superbuild-build" build number 55700:35:45[OMERO-build] $ /bin/bash -xe /tmp/jenkins6346188570429524478.sh
00:35:45+ mv omero-scripts/dist/omero_scripts-5.9.2.dev0.tar.gz .
00:35:45+ cd src
00:35:45+ export OMERO_BRANCH=merge_ci
00:35:45+ OMERO_BRANCH=merge_ci
00:35:45+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
00:35:45+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
00:35:45+ source /home/omero/settings.env
00:35:45++ OMERO_DB_HOST=pg
00:35:45++ OMERO_DB_USER=postgres
00:35:45++ OMERO_DB_PASS=
00:35:45++ OMERO_ROOT_PASS=omero
00:35:45++ OMERO_DATA_DIR=/OMERO
00:35:45++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:35:45+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
00:35:49+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl00:35:49Collecting zeroc-ice==3.6.5
00:35:49 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:35:53 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 4.9 MB/s eta 0:00:00
00:35:53Installing collected packages: zeroc-ice
00:35:54Successfully installed zeroc-ice-3.6.5
00:35:5400:35:54[notice] A new release of pip available: 22.3.1 -> 25.2
00:35:54[notice] To update, run: python3.11 -m pip install --upgrade pip
00:35:54+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
00:35:54Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
00:35:54Collecting setuptools<66
00:35:54 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
00:35:55Collecting omero-py
00:35:55 Using cached omero_py-5.21.2-py3-none-any.whl (2.8 MB)
00:35:55Collecting appdirs
00:35:55 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:35:55Collecting future
00:35:55 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:35:55Collecting numpy<3
00:35:55 Using cached numpy-2.3.4-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
00:35:56Collecting Pillow>=10.0.0
00:35:56 Using cached pillow-12.0.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB)
00:35:56Collecting PyYAML
00:35:56 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
00:35:56Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
00:35:56Collecting requests
00:35:56 Using cached requests-2.32.5-py3-none-any.whl (64 kB)
00:35:56Collecting portalocker
00:35:56 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
00:35:56Collecting charset_normalizer<4,>=2
00:35:56 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB)
00:35:56Collecting idna<4,>=2.5
00:35:56 Using cached idna-3.11-py3-none-any.whl (71 kB)
00:35:56Collecting urllib3<3,>=1.21.1
00:35:56 Using cached urllib3-2.5.0-py3-none-any.whl (129 kB)
00:35:56Collecting certifi>=2017.4.17
00:35:56 Using cached certifi-2025.10.5-py3-none-any.whl (163 kB)
00:35:57Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
00:35:57 Attempting uninstall: setuptools
00:35:57 Found existing installation: setuptools 65.5.1
00:35:57 Uninstalling setuptools-65.5.1:
00:35:57 Successfully uninstalled setuptools-65.5.1
00:36:02Successfully installed Pillow-12.0.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2025.10.5 charset_normalizer-3.4.4 future-1.0.0 idna-3.11 numpy-2.3.4 omero-py-5.21.2 portalocker-3.2.0 requests-2.32.5 setuptools-65.7.0 urllib3-2.5.0
00:36:0200:36:02[notice] A new release of pip available: 22.3.1 -> 25.2
00:36:02[notice] To update, run: python3.11 -m pip install --upgrade pip
00:36:02+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
00:36:02++ deactivate nondestructive
00:36:02++ '[' -n '' ']'
00:36:02++ '[' -n '' ']'
00:36:02++ hash -r
00:36:02++ '[' -n '' ']'
00:36:02++ unset VIRTUAL_ENV
00:36:02++ unset VIRTUAL_ENV_PROMPT
00:36:02++ '[' '!' nondestructive = nondestructive ']'
00:36:02++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
00:36:02++ export VIRTUAL_ENV
00:36:02++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:36:02++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:36:02++ export PATH
00:36:02++ '[' -n '' ']'
00:36:02++ '[' -z '' ']'
00:36:02++ _OLD_VIRTUAL_PS1=
00:36:02++ PS1='(omero-virtualenv) '
00:36:02++ export PS1
00:36:02++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
00:36:02++ export VIRTUAL_ENV_PROMPT
00:36:02++ hash -r
00:36:02+ source docs/hudson/OMERO.sh
00:36:02++ set -e
00:36:02++ set -u
00:36:02++ set -x
00:36:02++ source docs/hudson/functions.sh
00:36:02++ echo Building merge_ci
00:36:02Building merge_ci
00:36:02++ python3 ./build.py build-dev release-all
00:36:02Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:36:0300:36:03check-ivy:
00:36:03Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
00:36:03Created dir: /home/omero/workspace/OMERO-build/src/target
00:36:03:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:36:03:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:36:0300:36:03build-scons:
00:36:03Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:36:03No sub-builds to iterate on
00:36:04Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:36:0400:36:04buildlist:
00:36:04:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:36:04:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:36:0400:36:04clean:
00:36:04Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:36:04Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:36:0400:36:04python-clean:
00:36:04WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:36:04/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-576-2673f0acff-ice36-b560') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:36:04 warnings.warn(
00:36:04running clean
00:36:04Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
00:36:04Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:36:0500:36:05python-clean:
00:36:05WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:36:05/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-576-2673f0acff-ice36-b560') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:36:05 warnings.warn(
00:36:05running clean
00:36:05Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
00:36:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:36:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:36:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:36:0500:36:05python-clean:
00:36:05WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:36:05/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-576-2673f0acff-ice36-b560') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:36:05 warnings.warn(
00:36:05running clean
00:36:05Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
00:36:05Deleting directory /home/omero/workspace/OMERO-build/src/target
00:36:0500:36:05build-scons:
00:36:05Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:36:0500:36:05build:
00:36:05No sub-builds to iterate on
00:36:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:36:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:36:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:36:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:36:0500:36:05tools-init:
00:36:05no-op
00:36:0600:36:06retrieve:
00:36:06:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:36:06:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:36:06WARNING: An illegal reflective access operation has occurred
00:36:06WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
00:36:06WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
00:36:06WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
00:36:06WARNING: All illegal access operations will be denied in a future release
00:36:4100:36:41prepare:
00:36:41Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:36:41Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
00:36:41Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
00:36:41Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:36:41Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:36:41Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:36:41Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
00:36:41Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:36:41Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:36:41Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:36:41Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:36:41Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:36:41Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:36:41Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:36:41Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:36:4100:36:41pre-compile:
00:36:41Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:36:41Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:36:41Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:36:41Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:36:41Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:36:4100:36:41compile:
00:36:41no-op
00:36:4100:36:41package:
00:36:41Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
00:36:4100:36:41install:
00:36:41:: delivering :: omero#omero_client;working@52bf34d160e3 :: 5.6.3-576-2673f0acff-ice36-b560 :: integration :: Mon Oct 27 00:36:05 UTC 2025
00:36:41 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
00:36:41:: publishing :: omero#omero_client
00:36:41 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-576-2673f0acff-ice36-b560/omero_client-5.6.3-576-2673f0acff-ice36-b560.jar
00:36:41 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-576-2673f0acff-ice36-b560/omero_client-5.6.3-576-2673f0acff-ice36-b560.xml
00:36:42Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:36:42Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:36:4200:36:42retrieve:
00:36:42:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:36:42:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:36:42Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:36:4200:36:42dist:
00:36:42Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
00:36:42Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
00:36:42Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:36:42Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.2.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:36:42Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
00:36:42Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
00:36:42Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
00:36:42Entering /home/omero/workspace/OMERO-build/src/components/tests...
00:36:42Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:36:4200:36:42copy-licenses:
00:36:42Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:36:42Created dir: /home/omero/workspace/OMERO-build/src/dist/share
00:36:42Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
00:36:4200:36:42copy-history:
00:36:42Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:36:4200:36:42copy-etc:
00:36:42Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
00:36:42Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
00:36:4200:36:42copy-sql:
00:36:42Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
00:36:4900:36:49copy-server:
00:36:49 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
00:36:4900:36:49copy-client:
00:36:49Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
00:36:50 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
00:36:5000:36:50update-version:
00:36:50Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
00:36:5000:36:50create-workdirs:
00:36:50Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
00:36:50Created dir: /home/omero/workspace/OMERO-build/src/dist/var
00:36:5000:36:50copy-luts:
00:36:50Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:36:50Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:36:5000:36:50test-compile:
00:36:50:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:36:50Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:36:50Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:36:50Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:36:50Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:36:50Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:36:50Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:36:50Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:36:5100:36:51testng-init:
00:36:51:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:36:51:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:36:5300:36:53,650 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
00:36:5300:36:53,652 |-INFO in ch.qos.logback.classic.util.ContextInitializer@668f0ee - No custom configurators were discovered as a service.
00:36:5300:36:53,653 |-INFO in ch.qos.logback.classic.util.ContextInitializer@668f0ee - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
00:36:5300:36:53,656 |-INFO in ch.qos.logback.classic.util.ContextInitializer@668f0ee - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
00:36:5300:36:53,656 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
00:36:5300:36:53,656 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
00:36:5300:36:53,657 |-INFO in ch.qos.logback.classic.util.ContextInitializer@668f0ee - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
00:36:5300:36:53,657 |-INFO in ch.qos.logback.classic.util.ContextInitializer@668f0ee - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
00:36:5300:36:53,659 |-INFO in ch.qos.logback.classic.util.ContextInitializer@668f0ee - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
00:36:5300:36:53,659 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
00:36:5300:36:53,659 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:36:5300:36:53,660 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@430344bf - Resource [logback.xml] occurs multiple times on the classpath.
00:36:5300:36:53,660 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@430344bf - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:36:5300:36:53,660 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@430344bf - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
00:36:5300:36:53,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
00:36:5300:36:53,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
00:36:5300:36:53,876 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
00:36:5300:36:53,878 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@14fed6c7 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
00:36:5300:36:53,878 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@14fed6c7 - Please move "immediateFlush" property into the enclosing appender.
00:36:5300:36:53,938 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@14fed6c7 - Setting the "immediateFlush" property of the enclosing appender to true
00:36:5300:36:53,939 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
00:36:5300:36:53,939 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
00:36:5300:36:53,939 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
00:36:5300:36:53,939 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
00:36:5300:36:53,939 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
00:36:5300:36:53,939 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
00:36:5300:36:53,941 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@a221405 - End of configuration.
00:36:5300:36:53,943 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4b8c6a2f - Registering current configuration as safe fallback point
00:36:5300:36:53,943 |-INFO in ch.qos.logback.classic.util.ContextInitializer@668f0ee - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 284 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
00:36:5300:36:53lifecycle.test-compile:
00:36:53Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:36:53Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:36:54warning: [options] bootstrap class path not set in conjunction with -source 8
00:36:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:55import omero.grid.RawAccessRequest;
00:36:55 ^
00:36:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:55import omero.grid.RawAccessRequest;
00:36:55 ^
00:36:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:55import omero.grid.RawAccessRequest;
00:36:55 ^
00:36:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
00:36:55import omero.model.ImportJob;
00:36:55 ^
00:36:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:36:55import omero.model.ImportJobI;
00:36:55 ^
00:36:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
00:36:56 IObject link = (IObject) linkClass.newInstance();
00:36:56 ^
00:36:56 where T is a type-variable:
00:36:56 T extends Object declared in class Class
00:36:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
00:36:56 T copy = (T) obj.getClass().newInstance();
00:36:56 ^
00:36:56 where T is a type-variable:
00:36:56 T extends Object declared in class Class
00:36:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:56 RawAccessRequest raw = new RawAccessRequest();
00:36:56 ^
00:36:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:56 RawAccessRequest raw = new RawAccessRequest();
00:36:56 ^
00:36:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:36:56 raw.repoUuid = legacy.root().getHash().getValue();
00:36:56 ^
00:36:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
00:36:56 raw.command = "rm";
00:36:56 ^
00:36:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
00:36:56 raw.args = Arrays.asList(path);
00:36:56 ^
00:36:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
00:36:56 final IObject link = linkClass.newInstance();
00:36:56 ^
00:36:56 where T is a type-variable:
00:36:56 T extends Object declared in class Class
00:36:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
00:36:57 originalLink.setChild(annotationClass.newInstance());
00:36:57 ^
00:36:57 where T is a type-variable:
00:36:57 T extends Object declared in class Class
00:36:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:36:57 RoiResult r = svc.findByImage(id, new RoiOptions());
00:36:57 ^
00:36:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:57 final RawAccessRequest request = new RawAccessRequest();
00:36:57 ^
00:36:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:57 final RawAccessRequest request = new RawAccessRequest();
00:36:57 ^
00:36:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:36:57 request.repoUuid = repo.root().getHash().getValue();
00:36:57 ^
00:36:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
00:36:57 request.command = "exists";
00:36:57 ^
00:36:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
00:36:57 request.args = Collections.singletonList(dirPath);
00:36:57 ^
00:36:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:57 final RawAccessRequest request = new RawAccessRequest();
00:36:57 ^
00:36:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:57 final RawAccessRequest request = new RawAccessRequest();
00:36:57 ^
00:36:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:36:57 request.repoUuid = repo.root().getHash().getValue();
00:36:57 ^
00:36:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
00:36:57 request.command = "exists";
00:36:57 ^
00:36:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
00:36:57 request.args = Collections.singletonList(dirName);
00:36:57 ^
00:36:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
00:36:57 final ImportJob importJob = new ImportJobI();
00:36:57 ^
00:36:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:36:57 final ImportJob importJob = new ImportJobI();
00:36:57 ^
00:36:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
00:36:57 importJob.setImageName(omero.rtypes.rstring(name));
00:36:57 ^
00:36:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
00:36:57 importJob.setImageDescription(omero.rtypes.rstring(desc));
00:36:57 ^
00:36:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:36:57 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:36:57 ^
00:36:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:36:57 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:36:57 ^
00:36:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:36:57 final String savedName = sent.getImageName().getValue().toString();
00:36:57 ^
00:36:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:36:57 final String savedDesc = sent.getImageDescription().getValue().toString();
00:36:57 ^
00:36:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:36:57 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:36:57 ^
00:36:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:36:57 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:36:57 ^
00:36:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:36:57 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
00:36:57 ^
00:36:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:36:57 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
00:36:57 ^
00:36:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:36:58 RoiResult r = svc.findByImage(image.getId().getValue(),
00:36:58 ^
00:36:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:58 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:36:58 ^
00:36:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:58 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:36:58 ^
00:36:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:58 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:36:58 ^
00:36:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:58 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:36:58 ^
00:36:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
00:36:58 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
00:36:58 ^
00:36:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:58 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:36:58 ^
00:36:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
00:36:58 table = svc.getTable(f.getId().getValue());
00:36:58 ^
00:36:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:36:58 RoiResult r = svc.findByImage(image.getId().getValue(),
00:36:58 ^
00:36:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:36:58 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
00:36:58 ^
00:36:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:36:58 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
00:36:58 ^
00:36:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:36:58 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
00:36:58 ^
00:36:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:36:58 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
00:36:58 ^
00:36:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:36:58 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:36:58 ^
00:36:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:36:58 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:36:58 ^
00:36:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:36:58 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:36:58 ^
00:36:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:36:58 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:36:58 ^
00:36:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
00:36:58 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:36:58 ^
00:36:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:36:58 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:36:58 ^
00:36:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:36:58 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:36:58 ^
00:36:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:36:58 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:36:58 ^
00:36:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:36:58 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:36:58 ^
00:36:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:36:58 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:36:58 ^
00:36:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:36:58 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:36:58 ^
00:36:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:36:58 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:36:58 ^
00:36:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:36:58 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:36:58 ^
00:36:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:36:58 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:36:58 ^
00:36:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:36:58 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:36:58 ^
00:36:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:36:58 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:36:58 ^
00:36:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:36:58 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:36:58 ^
00:36:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:36:58 svc.getShapeStatsRestricted(
00:36:58 ^
00:36:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:36:58 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
00:36:58 ^
00:36:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:36:58 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:36:58 ^
00:36:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:36:58 request.typesToIgnore = Collections.singletonList("TagAnnotation");
00:36:58 ^
00:36:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:36:58 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
00:36:58 ^
00:36:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:36:58 request.typesToIgnore = Collections.singletonList("Annotation");
00:36:58 ^
00:36:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:36:58 request.typesToIgnore = Collections.singletonList("Annotation");
00:36:58 ^
00:36:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:36:58 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:36:58 ^
00:36:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:36:58 p2.setRelatedTo(p1);
00:36:58 ^
00:36:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:36:58 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
00:36:58 ^
00:36:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:36:58 pixels1.setRelatedTo(pixels2);
00:36:58 ^
00:36:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:36:58 Pixels pixels = pixels1.getRelatedTo();
00:36:58 ^
00:36:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:36:58 Assert.assertNull(pixels1.getRelatedTo());
00:36:58 ^
00:36:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:36:58 pixels1.setRelatedTo(pixels2);
00:36:58 ^
00:36:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:36:58 Pixels pixels = pixels1.getRelatedTo();
00:36:58 ^
00:36:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:36:58 Assert.assertNull(pixels1.getRelatedTo());
00:36:58 ^
00:36:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:58 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:36:58 ^
00:36:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:58 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:36:58 ^
00:36:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:58 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:36:58 ^
00:36:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:58 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:36:58 ^
00:36:58Note: Some input files use unchecked or unsafe operations.
00:36:58Note: Recompile with -Xlint:unchecked for details.
00:36:5888 warnings
00:36:58Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1491113161.tmp
00:36:58Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
00:36:58:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:36:58:: delivering :: omero#OmeroJava-test;working@52bf34d160e3 :: 5.6.3-576-2673f0acff-ice36-b560 :: integration :: Mon Oct 27 00:36:50 UTC 2025
00:36:58 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
00:36:58:: publishing :: omero#OmeroJava-test
00:36:58 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-576-2673f0acff-ice36-b560.jar
00:36:58 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-576-2673f0acff-ice36-b560.xml
00:36:5800:36:58build-eclipse:
00:36:58No sub-builds to iterate on
00:36:58Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:36:5900:36:59retrieve:
00:36:59:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:36:59:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:37:0100:37:01prepare:
00:37:01Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:37:0200:37:02release-clients:
00:37:02Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-576-2673f0acff-ice36-b560.zip
00:37:0700:37:07release-zip:
00:37:07Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-576-2673f0acff-ice36-b560.zip
00:37:1700:37:17BUILD SUCCESSFUL
00:37:17Total time: 1 minute 14 seconds
00:37:17++ '[' -d .git ']'
00:37:17++ python3 ./build.py release-src
00:37:17Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:37:1800:37:18release-src-git:
00:37:18Releasing openmicroscopy-5.6.3-576-2673f0acff-ice36-b560
00:37:19 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-576-2673f0acff-ice36-b560.zip
00:37:19 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-576-2673f0acff-ice36-b560-base.zip
00:37:2000:37:20BUILD SUCCESSFUL
00:37:20Total time: 3 seconds
00:37:20++ echo BUILD_NUMBER=560
00:37:20++ echo OMERO_BRANCH=merge_ci
00:37:20++ git_info
00:37:20+++ git rev-parse HEAD
00:37:20++ HEAD=2673f0acff0505f60e65308b92a4b9dd4b699507
00:37:20++ git log --max-count=1 2673f0acff0505f60e65308b92a4b9dd4b699507
00:37:20++ env
00:37:20++ sort
00:37:20Archiving artifacts
00:37:45Finished: SUCCESS
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