Skip to content

Changes

Summary

  1. Bump ZarrReader from `9a9e662` to `ccb5653` (details)
  2. Bump ome-common-java from `4604fff` to `0078901` (details)
  3. Bump bioformats from `adf3c52` to `16a7bf5` (details)
  4. merge master -Dorg -Ssuccess-only (details)
  5. Update component versions (details)
Commit 9139dca3481a2310550d588db6f479d6fd1cdd68 by noreply
Bump ZarrReader from `9a9e662` to `ccb5653`

Bumps [ZarrReader](https://github.com/ome/ZarrReader) from `9a9e662` to `ccb5653`.
- [Commits](https://github.com/ome/ZarrReader/compare/9a9e662a3b00b37d51100df7256b11e4036ae693...ccb56533c92405234bd0c51641324014eecf62bc)

---
updated-dependencies:
- dependency-name: ZarrReader
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>
The file was modified ZarrReader (diff)
Commit 47a596ce50350aa7360e489b180965850b134eb0 by noreply
Bump ome-common-java from `4604fff` to `0078901`

Bumps [ome-common-java](https://github.com/ome/ome-common-java) from `4604fff` to `0078901`.
- [Commits](https://github.com/ome/ome-common-java/compare/4604fffdea225ca54d27961c384f4f5a24d08015...007890128d738c3c9ea84a5a1842807f0a34165e)

---
updated-dependencies:
- dependency-name: ome-common-java
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>
The file was modified ome-common-java (diff)
Commit e2eaf0ef6b0e6b856484751592eb63249449ec37 by noreply
Bump bioformats from `adf3c52` to `16a7bf5`

Bumps [bioformats](https://github.com/openmicroscopy/bioformats) from `adf3c52` to `16a7bf5`.
- [Release notes](https://github.com/openmicroscopy/bioformats/releases)
- [Commits](https://github.com/openmicroscopy/bioformats/compare/adf3c52843883efc4dea7f3b7550129ac6e46c85...16a7bf5a11d0c2f1ee5feed4b763b523d07a2c28)

---
updated-dependencies:
- dependency-name: bioformats
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>
The file was modified bioformats (diff)
Commit 78e757a8a083c4bb4c116186e036b42ae3920f2b by snoopycrimecop
merge master -Dorg -Ssuccess-only

Repository: ome/bio-formats-build
Already up to date.

Merged PRs:
  - PR 625 dependabot[bot] 'Bump ZarrReader from `9a9e662` to `ccb5653`'
  - PR 626 dependabot[bot] 'Bump ome-common-java from `4604fff` to `0078901`'
  - PR 627 dependabot[bot] 'Bump bioformats from `adf3c52` to `16a7bf5`'

Repository: ome/ZarrReader
Excluded PRs:
  - PR 20 dgault 'ZarrReader: Use chunk API' (exclude comment)
Already up to date.

Repository: ome/bio-formats-documentation
Already up to date.

Repository: ome/bio-formats-examples
Already up to date.

Merged PRs:
  - PR 69 dgault 'Add macro examples from OME 2020 NGFF workshop'
  - PR 127 jburel 'Matlab Examples'
  - PR 128 sbesson 'Relicense Bio-Formats examples under BSD 2-clause'

Repository: openmicroscopy/bioformats
Excluded PRs:
  - PR 4205 NicoKiaru 'OIRReader: Major performance improvement when reading a ROI within a plane' (user: NicoKiaru)
  - PR 4200 tstoeter 'Allow processing multiple files sequentially in a single run, with file names read from stdin.' (user: tstoeter)
  - PR 4195 WalkerKnapp 'Andor SIF: Support files larger than 4 GB and with non-fixed-size footers' (user: WalkerKnapp)
  - PR 4190 melissalinkert 'Extend precompressed support to read DICOM and write TIFF/OME-TIFF' (stage: draft)
  - PR 4172 sbesson 'testSaneUsedFiles: check getCurrentFile is the first file in the getUsedFiles list' (stage: draft)
  - PR 4164 melissalinkert 'Reduce DICOM write time' (stage: draft)
  - PR 4131 dgault 'VirtualImagePlus: Retain B&C settings for each slice' (status: failure)
  - PR 4092 NicoKiaru 'Commits an alternative Zeiss CZI Reader' (user: NicoKiaru)
  - PR 4000 XLEFReaderForBioformats 'Reworking LMSMetadata package and adding a new lif reader' (user: XLEFReaderForBioformats)
  - PR 3794 dgault 'Chunk API: Add new API and functionality for reading and writing chunks' (label: exclude)
  - PR 3618 dgault 'Memoizer: Persist caching to sub readers' (label: breaking)
  - PR 3537 dgault 'Flex: Merge IDR changes and add new group plate option' (label: exclude)
Already up to date.

Merged PRs:
  - PR 4130 carandraug 'matlab/bfGetPlane.m: avoid use of makeDataArray2D when Octave (ome/bio-formats-octave-docker#29)'
  - PR 4181 melissalinkert 'Add support for reading compressed NDPI tiles'
  - PR 4196 melissalinkert 'DICOM: use FrameTimePointer to detect timelapse data'
  - PR 4198 cqian89 'SDT: fix NegativeArraySizeException when reading files recorded by SPCM64 9.90'

Repository: ome/ome-codecs
Excluded PRs:
  - PR 40 atbest 'Implement Zstandard compression' (user: atbest)
Already up to date.

Merged PRs:
  - PR 37 melissalinkert 'JPEG: warn if quality is outside [0.25, 1.0]'

Repository: ome/ome-common-java
Excluded PRs:
  - PR 59 NicoKiaru 'adds AverageImageScaler implementation of IImageScaler' (user: NicoKiaru)
Already up to date.

Repository: ome/ome-jai
Already up to date.

Repository: ome/ome-mdbtools
Already up to date.

Repository: ome/ome-metakit
Already up to date.

Repository: ome/ome-model
Already up to date.

Conflicting PRs (not included):
  - PR 174 jburel 'Remove docs'

Repository: ome/ome-poi
Already up to date.

Repository: ome/ome-stubs
Already up to date.

Generated by BIOFORMATS-push#137 (https://merge-ci.openmicroscopy.org/jenkins/job/BIOFORMATS-push/137/)
The file was modified ome-mdbtools (diff)
The file was modified ome-jai (diff)
The file was modified ome-poi (diff)
The file was modified ome-common-java (diff)
The file was modified ome-stubs (diff)
The file was modified bio-formats-examples (diff)
The file was modified bioformats (diff)
The file was modified ome-model (diff)
The file was modified ZarrReader (diff)
The file was modified .gitmodules (diff)
The file was modified ome-metakit (diff)
The file was modified bio-formats-documentation (diff)
The file was modified ome-codecs (diff)
Commit 7010d58cd75613be919b38f76c469ded8213bec4 by snoopycrimecop
Update component versions
The file was modified ome-poi (diff)
The file was modified bio-formats-examples (diff)
The file was modified ome-model (diff)
The file was modified bioformats (diff)
The file was modified ome-metakit (diff)
The file was modified ome-codecs (diff)
The file was modified bio-formats-documentation (diff)