Changes

Bump bioformats from `adf3c52` to `54cf1e8`

Bumps [bioformats](https://github.com/openmicroscopy/bioformats) from `adf3c52` to `54cf1e8`.
- [Release notes](https://github.com/openmicroscopy/bioformats/releases)
- [Commits](https://github.com/openmicroscopy/bioformats/compare/adf3c52843883efc4dea7f3b7550129ac6e46c85...54cf1e8106592e9f3f44817d053e65db799dbaf9)

---
updated-dependencies:
- dependency-name: bioformats
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>

Bump bio-formats-documentation from `1dc4881` to `7256a78`

Bumps [bio-formats-documentation](https://github.com/ome/bio-formats-documentation) from `1dc4881` to `7256a78`.
- [Commits](https://github.com/ome/bio-formats-documentation/compare/1dc488150a846d493bbd224401cd0dbe70797989...7256a782c90e3795f0ed8c40ca49504a396b0b72)

---
updated-dependencies:
- dependency-name: bio-formats-documentation
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>

merge master -Dorg -Ssuccess-only

Repository: ome/bio-formats-build
Excluded PRs:
  - PR 632 dependabot[bot] 'Bump ZarrReader from `9a9e662` to `b17c3ab`' (status: failure)
Already up to date.

Merged PRs:
  - PR 626 dependabot[bot] 'Bump ome-common-java from `4604fff` to `0078901`'
  - PR 633 dependabot[bot] 'Bump bioformats from `adf3c52` to `54cf1e8`'
  - PR 634 dependabot[bot] 'Bump bio-formats-documentation from `1dc4881` to `7256a78`'

Repository: ome/ZarrReader
Excluded PRs:
  - PR 20 dgault 'ZarrReader: Use chunk API' (exclude comment)
Updating 9a9e662..b17c3ab
Previously merged:
  - PR 93 dgault 'Bump version to 0.5.3-SNAPSHOT'
  - PR 92 dgault 'Bump version to 0.5.2'
  - PR 91 dgault 'Bump Bio-Formats version to 7.3.1'

Repository: ome/bio-formats-documentation
Excluded PRs:
  - PR 390 melissalinkert 'Update precompressed tile documentation' (label: exclude)
Already up to date.

Merged PRs:
  - PR 391 sbesson 'Migrate the command-line tools index to the users page'

Repository: ome/bio-formats-examples
Already up to date.

Merged PRs:
  - PR 69 dgault 'Add macro examples from OME 2020 NGFF workshop'
  - PR 127 jburel 'Matlab Examples'
  - PR 128 sbesson 'Relicense Bio-Formats examples under BSD 2-clause'

Repository: openmicroscopy/bioformats
Excluded PRs:
  - PR 4217 marcobitplane 'Imaris IMS Reader: support for LZ4 compression and performance improvements' (user: marcobitplane)
  - PR 4205 NicoKiaru 'OIRReader: Major performance improvement when reading a ROI within a plane' (user: NicoKiaru)
  - PR 4200 tstoeter 'Allow processing multiple files sequentially in a single run, with file names read from stdin.' (user: tstoeter)
  - PR 4196 melissalinkert 'DICOM: use FrameTimePointer to detect timelapse data' (label: exclude)
  - PR 4195 WalkerKnapp 'Andor SIF: Support files larger than 4 GB and with non-fixed-size footers' (user: WalkerKnapp)
  - PR 4172 sbesson 'testSaneUsedFiles: check getCurrentFile is the first file in the getUsedFiles list' (stage: draft)
  - PR 4131 dgault 'VirtualImagePlus: Retain B&C settings for each slice' (status: failure)
  - PR 4092 NicoKiaru 'Commits an alternative Zeiss CZI Reader' (user: NicoKiaru)
  - PR 4000 XLEFReaderForBioformats 'Reworking LMSMetadata package and adding a new lif reader' (user: XLEFReaderForBioformats)
  - PR 3794 dgault 'Chunk API: Add new API and functionality for reading and writing chunks' (label: exclude)
  - PR 3618 dgault 'Memoizer: Persist caching to sub readers' (label: breaking)
  - PR 3537 dgault 'Flex: Merge IDR changes and add new group plate option' (label: exclude)
Already up to date.

Merged PRs:
  - PR 4130 carandraug 'matlab/bfGetPlane.m: avoid use of makeDataArray2D when Octave (ome/bio-formats-octave-docker#29)'
  - PR 4164 melissalinkert 'Reduce DICOM write time'
  - PR 4198 cqian89 'SDT: fix NegativeArraySizeException when reading files recorded by SPCM64 9.90'
  - PR 4215 melissalinkert 'Fix DICOM export in ImageJ'
  - PR 4219 melissalinkert 'ImageJ exporter: save original metadata'
  - PR 4220 melissalinkert 'Fix float casting when autoscaling int values to byte'
  - PR 4222 melissalinkert 'LIF: fix offset calculation for certain datasets with multiple unstitched files'
  - PR 4224 melissalinkert 'RCPNL: add data for objective ID 18112'

Repository: ome/ome-codecs
Excluded PRs:
  - PR 40 atbest 'Implement Zstandard compression' (user: atbest)
Already up to date.

Merged PRs:
  - PR 37 melissalinkert 'JPEG: warn if quality is outside [0.25, 1.0]'

Repository: ome/ome-common-java
Excluded PRs:
  - PR 59 NicoKiaru 'adds AverageImageScaler implementation of IImageScaler' (user: NicoKiaru)
Already up to date.

Repository: ome/ome-jai
Already up to date.

Repository: ome/ome-mdbtools
Already up to date.

Repository: ome/ome-metakit
Already up to date.

Repository: ome/ome-model
Already up to date.

Conflicting PRs (not included):
  - PR 174 jburel 'Remove docs'

Repository: ome/ome-poi
Already up to date.

Repository: ome/ome-stubs
Already up to date.

Generated by BIOFORMATS-push#177 (https://merge-ci.openmicroscopy.org/jenkins/job/BIOFORMATS-push/177/)

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