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Summary

  1. merge master -Dorg -Ssuccess-only (details)
  2. Update component versions (details)
Commit 411808166af14f419a3e0fcb14480b376bcfdb05 by snoopycrimecop
merge master -Dorg -Ssuccess-only

Repository: ome/bio-formats-build
Excluded PRs:
  - PR 598 dependabot[bot] 'Bump ome-metakit from `8b5019a` to `8f31242`' (status: failure)
  - PR 597 dependabot[bot] 'Bump ome-stubs from `b92bb52` to `1559997`' (status: failure)
  - PR 596 dependabot[bot] 'Bump bioformats from `38cc402` to `682bc7e`' (status: failure)
  - PR 595 dependabot[bot] 'Bump ome-model from `9b37d39` to `db24e3a`' (status: failure)
  - PR 594 dependabot[bot] 'Bump ome-codecs from `d8be317` to `7f3130a`' (status: failure)
Already up to date.

Repository: ome/ZarrReader
Excluded PRs:
  - PR 74 dgault 'JZarr: Add jackson.core and jackson-databind to exclsions' (exclude comment)
  - PR 73 dgault 'Update ReadMe and Change Log' (status: failure)
  - PR 20 dgault 'ZarrReader: Use chunk API' (exclude comment)
Already up to date.

Merged PRs:
  - PR 75 dgault 'Update handling and parsing of acquisition metadata'
  - PR 82 dgault 'Reintroduce S3FileSystemStore'

Repository: ome/bio-formats-documentation
Updating b7fd1bfd..afd4c111
Previously merged:
  - PR 371 dgault 'Bump ome-model version to 6.3.6'
  - PR 370 dgault 'Bump ome-common to 6.0.22 and ome-model to 6.3.5'

Repository: ome/bio-formats-examples
Already up to date.

Merged PRs:
  - PR 69 dgault 'Add macro examples from OME 2020 NGFF workshop'
  - PR 127 jburel 'Matlab Examples'
  - PR 128 sbesson 'Relicense Bio-Formats examples under BSD 2-clause'

Repository: openmicroscopy/bioformats
Excluded PRs:
  - PR 4182 melissalinkert 'Fix Java 9+ warnings in formats-gpl component' (label: exclude)
  - PR 4181 melissalinkert 'Add support for reading compressed NDPI tiles' (label: exclude)
  - PR 4180 melissalinkert 'Columbus: update to use micrometers instead of `reference frame` for positions' (label: exclude)
  - PR 4179 melissalinkert 'Fix Java 9+ deprecation warnings in smaller components' (label: exclude)
  - PR 4172 sbesson 'testSaneUsedFiles: check getCurrentFile is the first file in the getUsedFiles list' (stage: draft)
  - PR 4164 melissalinkert 'Reduce DICOM write time' (stage: draft)
  - PR 4131 dgault 'VirtualImagePlus: Retain B&C settings for each slice' (status: failure)
  - PR 4092 NicoKiaru 'Commits an alternative Zeiss CZI Reader' (user: NicoKiaru)
  - PR 4000 XLEFReaderForBioformats 'Reworking LMSMetadata package and adding a new lif reader' (user: XLEFReaderForBioformats)
  - PR 3898 melissalinkert 'InCell 1000/2000 field count and plane metadata fixes' (stage: draft)
  - PR 3794 dgault 'Chunk API: Add new API and functionality for reading and writing chunks' (label: exclude)
  - PR 3680 iwbh15 'Performance increase in writeIFD' (user: iwbh15)
  - PR 3618 dgault 'Memoizer: Persist caching to sub readers' (label: breaking)
Updating 38cc402d27..682bc7e318
Previously merged:
  - PR 4183 dgault 'Bump lower level component versions prior to 7.3.0'

Merged PRs:
  - PR 3537 dgault 'Flex: Merge IDR changes and add new group plate option'
  - PR 4130 carandraug 'matlab/bfGetPlane.m: avoid use of makeDataArray2D when Octave (ome/bio-formats-octave-docker#29)'
  - PR 4177 melissalinkert 'Fix some Java 9+ warnings in formats-bsd'
  - PR 4178 melissalinkert 'Fix most Java 9+ deprecation warnings in bio-formats-plugins component'

Repository: ome/ome-codecs
Updating d8be317..7f3130a
Previously merged:
  - PR 38 dgault 'Bump ome-common to 6.0.22 and ome-jai to 0.14'

Merged PRs:
  - PR 37 melissalinkert 'JPEG: warn if quality is outside [0.25, 1.0]'

Repository: ome/ome-common-java
Excluded PRs:
  - PR 59 NicoKiaru 'adds AverageImageScaler implementation of IImageScaler' (user: NicoKiaru)
Updating bccb2c8..4604fff
Previously merged:

Repository: ome/ome-jai
Updating 38e60f0..e70c2ab
Previously merged:

Repository: ome/ome-mdbtools
Updating 9e70766..9193930
Previously merged:

Repository: ome/ome-metakit
Updating 8b5019a..8f31242
Previously merged:
  - PR 23 dgault 'Bump ome-common version to latest 6.0.22'

Repository: ome/ome-model
Excluded PRs:
  - PR 180 joshmoore 'xsd-fu: templates for linkml generation' (stage: draft)
Updating 9b37d39c..db24e3ad
Previously merged:
  - PR 189 dgault 'Bump ome-common version to 6.0.22'

Conflicting PRs (not included):
  - PR 174 jburel 'Remove docs'

Repository: ome/ome-poi
Updating 023b67e..da3a5f3
Previously merged:
  - PR 17 dgault 'Bump ome-common to 6.0.22'

Repository: ome/ome-stubs
Updating b92bb52..1559997
Previously merged:

Generated by BIOFORMATS-push#39 (https://merge-ci.openmicroscopy.org/jenkins/job/BIOFORMATS-push/39/)
The file was modified bio-formats-examples (diff)
The file was modified bioformats (diff)
The file was modified ome-stubs (diff)
The file was modified ZarrReader (diff)
The file was modified bio-formats-documentation (diff)
The file was modified ome-codecs (diff)
The file was modified ome-poi (diff)
The file was modified ome-jai (diff)
The file was modified ome-common-java (diff)
The file was modified .gitmodules (diff)
The file was modified ome-metakit (diff)
The file was modified ome-model (diff)
The file was modified ome-mdbtools (diff)
Commit 624ccbb90759fd4ea830b3785bcd6db12491851d by snoopycrimecop
Update component versions
The file was modified ome-codecs (diff)
The file was modified bioformats (diff)
The file was modified ome-poi (diff)
The file was modified bio-formats-documentation (diff)
The file was modified ome-model (diff)
The file was modified ome-metakit (diff)
The file was modified bio-formats-examples (diff)