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#14 294.5 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 294.5 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 294.5 [[1;34mINFO[m] Storing buildNumber: 5a057fbc58137f66c44f2b2bdbf0e3896a1bccf3 at timestamp: 1732407403880
#14 294.5 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 294.5 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 294.5
#14 294.5 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 294.5 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 294.5 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 294.5 [[1;34mINFO[m]
#14 294.5 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:resources[m [1m(default-resources)[m @ [36mformats-gpl[0;1m ---[m
#14 294.5 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 294.5 [[1;34mINFO[m] Copying 2 resources
#14 294.5 [[1;34mINFO[m] skip non existing resourceDirectory /bio-formats-build/bioformats/components/formats-gpl/lib
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#14 294.5 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 294.5 [[1;34mINFO[m] Compiling 174 source files to /bio-formats-build/bioformats/components/formats-gpl/target/classes
#14 297.0 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java: Some input files use or override a deprecated API.
#14 297.0 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java: Recompile with -Xlint:deprecation for details.
#14 297.0 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ImarisHDFReader.java: Some input files use unchecked or unsafe operations.
#14 297.0 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ImarisHDFReader.java: Recompile with -Xlint:unchecked for details.
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#14 297.0 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 297.0 [[1;34mINFO[m] Compiling 23 source files to /bio-formats-build/bioformats/components/formats-gpl/target/test-classes
#14 297.2 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/test/loci/formats/utests/InOutCurrentTest.java: /bio-formats-build/bioformats/components/formats-gpl/test/loci/formats/utests/InOutCurrentTest.java uses unchecked or unsafe operations.
#14 297.2 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/test/loci/formats/utests/InOutCurrentTest.java: Recompile with -Xlint:unchecked for details.
#14 297.2 [[1;34mINFO[m]
#14 297.2 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(default-test)[m @ [36mformats-gpl[0;1m ---[m
#14 297.2 [[1;34mINFO[m]
#14 297.2 [[1;34mINFO[m] -------------------------------------------------------
#14 297.2 [[1;34mINFO[m] T E S T S
#14 297.2 [[1;34mINFO[m] -------------------------------------------------------
#14 297.4 [[1;34mINFO[m] Running [1mTestSuite[m
#14 298.6 2024-11-24 00:16:47,992 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@66f66866 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 298.6 2024-11-24 00:16:47,996 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@4f8caaf3 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 298.6 2024-11-24 00:16:48,050 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@4287d447 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 298.6 2024-11-24 00:16:48,050 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@3af37506 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 298.7 2024-11-24 00:16:48,101 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@7dcc91fd reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 298.7 2024-11-24 00:16:48,101 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@36453307 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 298.7 2024-11-24 00:16:48,147 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@49b07ee3 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 298.7 2024-11-24 00:16:48,148 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@383f3558 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 298.8 2024-11-24 00:16:48,192 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@13e698c7 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 298.8 2024-11-24 00:16:48,193 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@5a4c638d reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 298.8 2024-11-24 00:16:48,251 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@17ae7628 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 298.8 2024-11-24 00:16:48,252 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@1136b469 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 298.9 2024-11-24 00:16:48,295 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@201aa8c1 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 298.9 2024-11-24 00:16:48,295 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@5d58c727 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 298.9 2024-11-24 00:16:48,336 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@21719a0 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 298.9 2024-11-24 00:16:48,336 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@76b224cd reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 299.2 [[1;34mINFO[m] [1;32mTests run: [0;1;32m99[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.772 s - in [1mTestSuite[m
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#14 299.5 [[1;34mINFO[m] Results:
#14 299.5 [[1;34mINFO[m]
#14 299.5 [[1;34mINFO[m] [1;32mTests run: 99, Failures: 0, Errors: 0, Skipped: 0[m
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#14 299.5 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(missing-mdb-test)[m @ [36mformats-gpl[0;1m ---[m
#14 299.5 [[1;34mINFO[m]
#14 299.5 [[1;34mINFO[m] -------------------------------------------------------
#14 299.5 [[1;34mINFO[m] T E S T S
#14 299.5 [[1;34mINFO[m] -------------------------------------------------------
#14 299.7 [[1;34mINFO[m] Running [1mTestSuite[m
#14 300.1 [[1;34mINFO[m] [1;32mTests run: [0;1;32m1[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.417 s - in [1mTestSuite[m
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#14 300.4 [[1;34mINFO[m] Results:
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#14 300.4 [[1;34mINFO[m] [1;32mTests run: 1, Failures: 0, Errors: 0, Skipped: 0[m
#14 300.4 [[1;34mINFO[m]
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#14 300.4 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(missing-poi-test)[m @ [36mformats-gpl[0;1m ---[m
#14 300.4 [[1;34mINFO[m]
#14 300.4 [[1;34mINFO[m] -------------------------------------------------------
#14 300.4 [[1;34mINFO[m] T E S T S
#14 300.4 [[1;34mINFO[m] -------------------------------------------------------
#14 300.6 [[1;34mINFO[m] Running [1mTestSuite[m
#14 301.0 [[1;34mINFO[m] [1;32mTests run: [0;1;32m1[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.41 s - in [1mTestSuite[m
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#14 301.3 [[1;34mINFO[m] Results:
#14 301.3 [[1;34mINFO[m]
#14 301.3 [[1;34mINFO[m] [1;32mTests run: 1, Failures: 0, Errors: 0, Skipped: 0[m
#14 301.3 [[1;34mINFO[m]
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#14 301.3 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(missing-netcdf-test)[m @ [36mformats-gpl[0;1m ---[m
#14 301.3 [[1;34mINFO[m]
#14 301.3 [[1;34mINFO[m] -------------------------------------------------------
#14 301.3 [[1;34mINFO[m] T E S T S
#14 301.3 [[1;34mINFO[m] -------------------------------------------------------
#14 301.5 [[1;34mINFO[m] Running [1mTestSuite[m
#14 301.9 [[1;34mINFO[m] [1;32mTests run: [0;1;32m1[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.413 s - in [1mTestSuite[m
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#14 302.2 [[1;34mINFO[m] Results:
#14 302.2 [[1;34mINFO[m]
#14 302.2 [[1;34mINFO[m] [1;32mTests run: 1, Failures: 0, Errors: 0, Skipped: 0[m
#14 302.2 [[1;34mINFO[m]
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#14 302.2 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:jar[m [1m(default-jar)[m @ [36mformats-gpl[0;1m ---[m
#14 302.2 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.1.0-SNAPSHOT.jar
#14 302.3 [[1;34mINFO[m]
#14 302.3 [[1;34mINFO[m] [1m>>> [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m > [0;1mgenerate-sources[m @ [36mformats-gpl[0;1m >>>[m
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#14 302.3 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mformats-gpl[0;1m ---[m
#14 302.3 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 302.3 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 302.3 [[1;34mINFO[m] Storing buildNumber: 5a057fbc58137f66c44f2b2bdbf0e3896a1bccf3 at timestamp: 1732407411684
#14 302.3 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 302.3 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 302.3
#14 302.3 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 302.3 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 302.3 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 302.3 [[1;34mINFO[m]
#14 302.3 [[1;34mINFO[m] [1m<<< [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m < [0;1mgenerate-sources[m @ [36mformats-gpl[0;1m <<<[m
#14 302.3 [[1;34mINFO[m]
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#14 302.3 [[1;34mINFO[m] [1m--- [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[m @ [36mformats-gpl[0;1m ---[m
#14 302.3 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.1.0-SNAPSHOT-sources.jar
#14 302.3 [[1;34mINFO[m]
#14 302.3 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:test-jar[m [1m(default)[m @ [36mformats-gpl[0;1m ---[m
#14 302.3 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.1.0-SNAPSHOT-tests.jar
#14 302.4 [[1;34mINFO[m]
#14 302.4 [[1;34mINFO[m] [1m--- [0;32mmaven-install-plugin:2.5.2:install[m [1m(default-install)[m @ [36mformats-gpl[0;1m ---[m
#14 302.4 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.1.0-SNAPSHOT.jar to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.jar
#14 302.4 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.pom
#14 302.4 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.1.0-SNAPSHOT-sources.jar to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT-sources.jar
#14 302.4 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.1.0-SNAPSHOT-tests.jar to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT-tests.jar
#14 302.4 [[1;34mINFO[m]
#14 302.4 [[1;34mINFO[m] [1m----------------------< [0;36mome:bio-formats_plugins[0;1m >-----------------------[m
#14 302.4 [[1;34mINFO[m] [1mBuilding Bio-Formats Plugins for ImageJ 8.1.0-SNAPSHOT [17/24][m
#14 302.4 [[1;34mINFO[m] [1m--------------------------------[ jar ]---------------------------------[m
#14 302.4 Downloading from central: https://repo.maven.apache.org/maven2/net/imagej/ij/1.54c/ij-1.54c.pom
#14 302.4 Progress (1): 4.1/7.9 kB
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#14 302.4 Downloading from central: https://repo.maven.apache.org/maven2/net/imagej/ij/1.54c/ij-1.54c.jar
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Downloaded from central: https://repo.maven.apache.org/maven2/net/imagej/ij/1.54c/ij-1.54c.jar (2.5 MB at 20 MB/s)
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#14 302.5 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 302.5 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 302.5 [[1;34mINFO[m] Storing buildNumber: 5a057fbc58137f66c44f2b2bdbf0e3896a1bccf3 at timestamp: 1732407411957
#14 302.5 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 302.5 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 302.5
#14 302.5 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 302.5 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 302.6 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
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#14 302.6 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
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#14 302.6 [[1;34mINFO[m] skip non existing resourceDirectory /bio-formats-build/bioformats/components/bio-formats-plugins/lib
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#14 302.6 [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.7.0:compile[m [1m(default-compile)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 302.6 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 302.6 [[1;34mINFO[m] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/target/classes
#14 303.0 [[1;34mINFO[m] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java: Some input files use or override a deprecated API.
#14 303.0 [[1;34mINFO[m] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java: Recompile with -Xlint:deprecation for details.
#14 303.0 [[1;34mINFO[m] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#14 303.0 [[1;34mINFO[m] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java: Recompile with -Xlint:unchecked for details.
#14 303.0 [[1;34mINFO[m]
#14 303.0 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:testResources[m [1m(default-testResources)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 303.0 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 303.0 [[1;34mINFO[m] Copying 1 resource
#14 303.0 [[1;34mINFO[m]
#14 303.0 [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.7.0:testCompile[m [1m(default-testCompile)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 303.0 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 303.0 [[1;34mINFO[m] Compiling 3 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/target/test-classes
#14 303.2 [[1;34mINFO[m]
#14 303.2 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(default-test)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 303.2 [[1;34mINFO[m]
#14 303.2 [[1;34mINFO[m] -------------------------------------------------------
#14 303.2 [[1;34mINFO[m] T E S T S
#14 303.2 [[1;34mINFO[m] -------------------------------------------------------
#14 303.4 [[1;34mINFO[m] Running [1mTestSuite[m
#14 304.6 Warning: Data has too many channels for Colorized color mode
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#14 304.7 Warning: Data has too many channels for Colorized color mode
#14 304.8 Warning: Data has too many channels for Colorized color mode
#14 304.8 Warning: Data has too many channels for Colorized color mode
#14 304.8 Warning: Data has too many channels for Colorized color mode
#14 304.9 Warning: Data has too many channels for Composite color mode
#14 304.9 Warning: Data has too many channels for Composite color mode
#14 305.2 Warning: Data has too many channels for Composite color mode
#14 305.2 Warning: Data has too many channels for Composite color mode
#14 305.2 Warning: Data has too many channels for Composite color mode
#14 305.2 Warning: Data has too many channels for Composite color mode
#14 305.2 Warning: Data has too many channels for Composite color mode
#14 305.2 Warning: Data has too many channels for Composite color mode
#14 305.2 Warning: Data has too many channels for Composite color mode
#14 305.2 Warning: Data has too many channels for Composite color mode
#14 305.2 Warning: Data has too many channels for Composite color mode
#14 305.2 Warning: Data has too many channels for Composite color mode
#14 305.3 Warning: Data has too many channels for Composite color mode
#14 305.3 Warning: Data has too many channels for Composite color mode
#14 305.3 Warning: Data has too many channels for Composite color mode
#14 305.3 Warning: Data has too many channels for Composite color mode
#14 305.3 Warning: Data has too many channels for Composite color mode
#14 305.3 Warning: Data has too many channels for Composite color mode
#14 305.6 Warning: Data has too many channels for Composite color mode
#14 305.6 Warning: Data has too many channels for Composite color mode
#14 305.6 Warning: Data has too many channels for Composite color mode
#14 305.6 Warning: Data has too many channels for Composite color mode
#14 305.6 Warning: Data has too many channels for Composite color mode
#14 305.6 Warning: Data has too many channels for Composite color mode
#14 305.6 Warning: Data has too many channels for Composite color mode
#14 305.7 Warning: Data has too many channels for Composite color mode
#14 305.7 Warning: Data has too many channels for Composite color mode
#14 305.7 Warning: Data has too many channels for Composite color mode
#14 305.7 Warning: Data has too many channels for Composite color mode
#14 305.7 Warning: Data has too many channels for Composite color mode
#14 305.7 Warning: Data has too many channels for Composite color mode
#14 305.7 Warning: Data has too many channels for Composite color mode
#14 305.7 Warning: Data has too many channels for Composite color mode
#14 305.7 Warning: Data has too many channels for Composite color mode
#14 305.7 Warning: Data has too many channels for Composite color mode
#14 305.8 Warning: Data has too many channels for Composite color mode
#14 306.0 Warning: Data has too many channels for Composite color mode
#14 306.1 Warning: Data has too many channels for Composite color mode
#14 306.1 Warning: Data has too many channels for Composite color mode
#14 306.1 Warning: Data has too many channels for Composite color mode
#14 306.1 Warning: Data has too many channels for Composite color mode
#14 306.1 Warning: Data has too many channels for Composite color mode
#14 306.1 Warning: Data has too many channels for Composite color mode
#14 306.1 Warning: Data has too many channels for Composite color mode
#14 306.1 Warning: Data has too many channels for Composite color mode
#14 306.1 Warning: Data has too many channels for Composite color mode
#14 306.1 Warning: Data has too many channels for Composite color mode
#14 306.2 Warning: Data has too many channels for Composite color mode
#14 306.2 Warning: Data has too many channels for Composite color mode
#14 306.2 Warning: Data has too many channels for Composite color mode
#14 306.2 Warning: Data has too many channels for Composite color mode
#14 306.2 Warning: Data has too many channels for Composite color mode
#14 306.5 Warning: Data has too many channels for Composite color mode
#14 306.5 Warning: Data has too many channels for Composite color mode
#14 306.6 Warning: Data has too many channels for Composite color mode
#14 306.6 Warning: Data has too many channels for Composite color mode
#14 306.6 Warning: Data has too many channels for Composite color mode
#14 306.6 Warning: Data has too many channels for Composite color mode
#14 306.6 Warning: Data has too many channels for Composite color mode
#14 306.6 Warning: Data has too many channels for Composite color mode
#14 306.6 Warning: Data has too many channels for Composite color mode
#14 306.6 Warning: Data has too many channels for Composite color mode
#14 306.6 Warning: Data has too many channels for Composite color mode
#14 306.6 Warning: Data has too many channels for Composite color mode
#14 306.7 Warning: Data has too many channels for Composite color mode
#14 306.7 Warning: Data has too many channels for Composite color mode
#14 306.7 Warning: Data has too many channels for Composite color mode
#14 306.7 Warning: Data has too many channels for Composite color mode
#14 306.7 Warning: Data has too many channels for Custom color mode
#14 306.7 Warning: Data has too many channels for Custom color mode
#14 306.8 Warning: Data has too many channels for Custom color mode
#14 306.8 Warning: Data has too many channels for Custom color mode
#14 306.8 Warning: Data has too many channels for Custom color mode
#14 306.8 Warning: Data has too many channels for Custom color mode
#14 306.8 Warning: Data has too many channels for Custom color mode
#14 306.9 Warning: Data has too many channels for Custom color mode
#14 306.9 Warning: Data has too many channels for Default color mode
#14 306.9 Warning: Data has too many channels for Default color mode
#14 306.9 Warning: Data has too many channels for Default color mode
#14 307.0 Warning: Data has too many channels for Default color mode
#14 307.0 Warning: Data has too many channels for Default color mode
#14 307.0 Warning: Data has too many channels for Default color mode
#14 307.0 Warning: Data has too many channels for Default color mode
#14 307.0 Warning: Data has too many channels for Default color mode
#14 307.1 Warning: Data has too many channels for Default color mode
#14 307.1 Warning: Data has too many channels for Default color mode
#14 307.1 Warning: Data has too many channels for Default color mode
#14 307.1 Warning: Data has too many channels for Default color mode
#14 307.2 Warning: Data has too many channels for Default color mode
#14 307.2 Warning: Data has too many channels for Default color mode
#14 307.2 Warning: Data has too many channels for Default color mode
#14 307.2 Warning: Data has too many channels for Default color mode
#14 307.3 Warning: Data has too many channels for Grayscale color mode
#14 307.3 Warning: Data has too many channels for Grayscale color mode
#14 307.3 Warning: Data has too many channels for Grayscale color mode
#14 307.3 Warning: Data has too many channels for Grayscale color mode
#14 307.3 Warning: Data has too many channels for Grayscale color mode
#14 307.4 Warning: Data has too many channels for Grayscale color mode
#14 307.4 Warning: Data has too many channels for Grayscale color mode
#14 307.4 Warning: Data has too many channels for Grayscale color mode
#14 307.5 Warning: Data has too many channels for Colorized color mode
#14 307.5 Warning: Data has too many channels for Colorized color mode
#14 307.5 Warning: Data has too many channels for Colorized color mode
#14 308.0 Warning: Data has too many channels for Default color mode
#14 308.2 [[1;34mINFO[m] [1;32mTests run: [0;1;32m30[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 4.874 s - in [1mTestSuite[m
#14 308.6 [[1;34mINFO[m]
#14 308.6 [[1;34mINFO[m] Results:
#14 308.6 [[1;34mINFO[m]
#14 308.6 [[1;34mINFO[m] [1;32mTests run: 30, Failures: 0, Errors: 0, Skipped: 0[m
#14 308.6 [[1;34mINFO[m]
#14 308.6 [[1;34mINFO[m]
#14 308.6 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:jar[m [1m(default-jar)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 308.6 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.1.0-SNAPSHOT.jar
#14 308.6 [[1;34mINFO[m]
#14 308.6 [[1;34mINFO[m] [1m>>> [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m > [0;1mgenerate-sources[m @ [36mbio-formats_plugins[0;1m >>>[m
#14 308.6 [[1;34mINFO[m]
#14 308.6 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 308.6 [[1;34mINFO[m]
#14 308.6 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 308.6 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 308.6 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 308.6 [[1;34mINFO[m] Storing buildNumber: 5a057fbc58137f66c44f2b2bdbf0e3896a1bccf3 at timestamp: 1732407418017
#14 308.6 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 308.6 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 308.6
#14 308.6 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 308.6 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 308.6 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 308.6 [[1;34mINFO[m]
#14 308.6 [[1;34mINFO[m] [1m<<< [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m < [0;1mgenerate-sources[m @ [36mbio-formats_plugins[0;1m <<<[m
#14 308.6 [[1;34mINFO[m]
#14 308.6 [[1;34mINFO[m]
#14 308.6 [[1;34mINFO[m] [1m--- [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 308.6 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.1.0-SNAPSHOT-sources.jar
#14 308.7 [[1;34mINFO[m]
#14 308.7 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:test-jar[m [1m(default)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 308.7 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.1.0-SNAPSHOT-tests.jar
#14 308.7 [[1;34mINFO[m]
#14 308.7 [[1;34mINFO[m] [1m--- [0;32mmaven-install-plugin:2.5.2:install[m [1m(default-install)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 308.7 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.1.0-SNAPSHOT.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.jar
#14 308.7 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.pom
#14 308.7 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.1.0-SNAPSHOT-sources.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT-sources.jar
#14 308.7 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.1.0-SNAPSHOT-tests.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT-tests.jar
#14 308.7 [[1;34mINFO[m]
#14 308.7 [[1;34mINFO[m] [1m-----------------------< [0;36mome:bio-formats-tools[0;1m >------------------------[m
#14 308.7 [[1;34mINFO[m] [1mBuilding Bio-Formats command line tools 8.1.0-SNAPSHOT [18/24][m
#14 308.7 [[1;34mINFO[m] [1m--------------------------------[ jar ]---------------------------------[m
#14 308.7 [[1;34mINFO[m]
#14 308.7 [[1;34mINFO[m] [1m--- [0;32mmaven-clean-plugin:3.1.0:clean[m [1m(default-clean)[m @ [36mbio-formats-tools[0;1m ---[m
#14 308.7 [[1;34mINFO[m]
#14 308.7 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mbio-formats-tools[0;1m ---[m
#14 308.7 [[1;34mINFO[m]
#14 308.7 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mbio-formats-tools[0;1m ---[m
#14 308.7 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-tools' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 308.7 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-tools
#14 308.7 [[1;34mINFO[m] Storing buildNumber: 5a057fbc58137f66c44f2b2bdbf0e3896a1bccf3 at timestamp: 1732407418096
#14 308.7 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 308.7 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 308.7
#14 308.7 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-tools' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 308.7 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-tools
#14 308.7 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 308.7 [[1;34mINFO[m]
#14 308.7 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:resources[m [1m(default-resources)[m @ [36mbio-formats-tools[0;1m ---[m
#14 308.7 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 308.7 [[1;34mINFO[m] Copying 0 resource
#14 308.7 [[1;34mINFO[m] skip non existing resourceDirectory /bio-formats-build/bioformats/components/bio-formats-tools/lib
#14 308.7 [[1;34mINFO[m] Copying 0 resource
#14 308.7 [[1;34mINFO[m] Copying 0 resource
#14 308.7 [[1;34mINFO[m]
#14 308.7 [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.7.0:compile[m [1m(default-compile)[m @ [36mbio-formats-tools[0;1m ---[m
#14 308.7 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 308.7 [[1;34mINFO[m] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/target/classes
#14 308.9 [[1;34mINFO[m]
#14 308.9 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:testResources[m [1m(default-testResources)[m @ [36mbio-formats-tools[0;1m ---[m
#14 308.9 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 308.9 [[1;34mINFO[m] Copying 1 resource
#14 308.9 [[1;34mINFO[m]
#14 308.9 [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.7.0:testCompile[m [1m(default-testCompile)[m @ [36mbio-formats-tools[0;1m ---[m
#14 308.9 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 308.9 [[1;34mINFO[m] Compiling 1 source file to /bio-formats-build/bioformats/components/bio-formats-tools/target/test-classes
#14 309.0 [[1;34mINFO[m]
#14 309.0 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(default-test)[m @ [36mbio-formats-tools[0;1m ---[m
#14 309.0 [[1;34mINFO[m]
#14 309.0 [[1;34mINFO[m] -------------------------------------------------------
#14 309.0 [[1;34mINFO[m] T E S T S
#14 309.0 [[1;34mINFO[m] -------------------------------------------------------
#14 309.1 [[1;34mINFO[m] Running loci.formats.tools.[1mImageConverterTest[m
#14 372.6 [[1;34mINFO[m] [1;32mTests run: [0;1;32m55[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 63.502 s - in loci.formats.tools.[1mImageConverterTest[m
#14 373.0 [[1;34mINFO[m]
#14 373.0 [[1;34mINFO[m] Results:
#14 373.0 [[1;34mINFO[m]
#14 373.0 [[1;34mINFO[m] [1;32mTests run: 55, Failures: 0, Errors: 0, Skipped: 0[m
#14 373.0 [[1;34mINFO[m]
#14 373.0 [[1;34mINFO[m]
#14 373.0 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:jar[m [1m(default-jar)[m @ [36mbio-formats-tools[0;1m ---[m
#14 373.0 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.1.0-SNAPSHOT.jar
#14 373.0 [[1;34mINFO[m]
#14 373.0 [[1;34mINFO[m] [1m>>> [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m > [0;1mgenerate-sources[m @ [36mbio-formats-tools[0;1m >>>[m
#14 373.0 [[1;34mINFO[m]
#14 373.0 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mbio-formats-tools[0;1m ---[m
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#14 373.0 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-tools' && 'git' 'rev-parse' '--verify' 'HEAD'
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#14 373.0 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.1.0-SNAPSHOT-sources.jar
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#14 373.0 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.1.0-SNAPSHOT.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.jar
#14 373.0 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.pom
#14 373.0 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.1.0-SNAPSHOT-sources.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT-sources.jar
#14 373.1 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.1.0-SNAPSHOT-tests.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT-tests.jar
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#14 373.1 [[1;34mINFO[m] [1mBuilding bioformats_package bundle 8.1.0-SNAPSHOT [19/24][m
#14 373.1 [[1;34mINFO[m] [1m--------------------------------[ pom ]---------------------------------[m
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#14 373.1 [[1;34mINFO[m]
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#14 373.1 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bundles/bioformats_package' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 373.1 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bundles/bioformats_package
#14 373.1 [[1;34mINFO[m] Storing buildNumber: 5a057fbc58137f66c44f2b2bdbf0e3896a1bccf3 at timestamp: 1732407482544
#14 373.1 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 373.1 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 373.1
#14 373.1 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bundles/bioformats_package' && 'git' 'rev-parse' '--verify' 'HEAD'
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#14 373.1 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bundles/bioformats_package' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 373.1 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bundles/bioformats_package
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#14 373.2 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bundles/bioformats_package' && 'git' 'rev-parse' '--verify' 'HEAD'
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#14 373.2 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/shared/maven-artifact-transfer/0.9.0/maven-artifact-transfer-0.9.0.pom
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#14 373.2 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/shared/maven-artifact-transfer/0.9.0/maven-artifact-transfer-0.9.0.jar
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#14 373.3 [[1;34mINFO[m] Reading assembly descriptor: assembly.xml
#14 373.6 [[1;33mWARNING[m] The following patterns were never triggered in this artifact exclusion filter:
#14 373.6 o 'gov.nih.imagej:imagej'
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#14 373.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/maven-bundle-plugin/5.1.8/maven-bundle-plugin-5.1.8.pom
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#14 373.7 Downloading from central: https://repo.maven.apache.org/maven2/biz/aQute/bnd/biz.aQute.bndlib/6.3.1/biz.aQute.bndlib-6.3.1.pom
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#14 374.1 Downloading from central: https://repo.maven.apache.org/maven2/org/slf4j/slf4j-api/1.7.25/slf4j-api-1.7.25.pom
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#14 374.1 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/org.apache.felix.bundlerepository/1.6.6/org.apache.felix.bundlerepository-1.6.6.pom
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#14 374.2 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.compendium/4.2.0/org.osgi.compendium-4.2.0.pom
#14 374.3 Progress (1): 463 B
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#14 374.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-core/3.3.9/maven-core-3.3.9.pom
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#14 374.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven/3.3.9/maven-3.3.9.pom
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#14 374.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-model/3.3.9/maven-model-3.3.9.pom
#14 374.3 Progress (1): 4.0 kB
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#14 374.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/commons/commons-lang3/3.4/commons-lang3-3.4.pom
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#14 374.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/commons/commons-parent/37/commons-parent-37.pom
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#14 374.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-settings/3.3.9/maven-settings-3.3.9.pom
#14 374.4 Progress (1): 1.8 kB
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#14 374.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-settings-builder/3.3.9/maven-settings-builder-3.3.9.pom
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#14 374.5 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-builder-support/3.3.9/maven-builder-support-3.3.9.pom
#14 374.5 Progress (1): 1.7 kB
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#14 374.5 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interpolation/1.21/plexus-interpolation-1.21.pom
#14 374.5 Progress (1): 1.5 kB
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#14 374.5 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-repository-metadata/3.3.9/maven-repository-metadata-3.3.9.pom
#14 374.5 Progress (1): 1.9 kB
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#14 374.5 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-artifact/3.3.9/maven-artifact-3.3.9.pom
#14 374.6 Progress (1): 2.1 kB
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#14 374.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-api/3.3.9/maven-plugin-api-3.3.9.pom
#14 374.6 Progress (1): 2.7 kB
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#14 374.6 Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/sisu/org.eclipse.sisu.plexus/0.3.2/org.eclipse.sisu.plexus-0.3.2.pom
#14 374.6 Progress (1): 4.1/4.2 kB
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#14 374.6 Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/sisu/sisu-plexus/0.3.2/sisu-plexus-0.3.2.pom
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#14 374.7 Downloading from central: https://repo.maven.apache.org/maven2/javax/enterprise/cdi-api/1.0/cdi-api-1.0.pom
#14 374.7 Progress (1): 1.4 kB
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#14 374.7 Downloading from central: https://repo.maven.apache.org/maven2/org/jboss/weld/weld-api-parent/1.0/weld-api-parent-1.0.pom
#14 374.7 Progress (1): 2.4 kB
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#14 374.7 Downloading from central: https://repo.maven.apache.org/maven2/org/jboss/weld/weld-api-bom/1.0/weld-api-bom-1.0.pom
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#14 374.7 Downloading from central: https://repo.maven.apache.org/maven2/org/jboss/weld/weld-parent/6/weld-parent-6.pom
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#14 374.8 Downloading from central: https://repo.maven.apache.org/maven2/javax/annotation/jsr250-api/1.0/jsr250-api-1.0.pom
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#14 374.8 Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/sisu/org.eclipse.sisu.inject/0.3.2/org.eclipse.sisu.inject-0.3.2.pom
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#14 374.8 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-classworlds/2.5.2/plexus-classworlds-2.5.2.pom
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#14 374.9 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-utils/3.0.17/plexus-utils-3.0.17.pom
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#14 374.9 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-model-builder/3.3.9/maven-model-builder-3.3.9.pom
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#14 374.9 Downloading from central: https://repo.maven.apache.org/maven2/com/google/guava/guava/18.0/guava-18.0.pom
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#14 374.9 Downloading from central: https://repo.maven.apache.org/maven2/com/google/guava/guava-parent/18.0/guava-parent-18.0.pom
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#14 375.0 [output clipped, log limit 2MiB reached]
#14 477.2 SLF4J: No SLF4J providers were found.
#14 477.2 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 477.2 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 DONE 489.2s
#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.0s
#16 [12/13] RUN ant jars tools
#16 0.531 Buildfile: /bio-formats-build/bioformats/build.xml
#16 0.994 [echo] isSnapshot = true
#16 1.093
#16 1.093 copy-jars:
#16 1.093
#16 1.093 deps-formats-api:
#16 1.173 [echo] isSnapshot = true
#16 1.227
#16 1.227 install-pom:
#16 1.422 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/pom-bio-formats-8.1.0-SNAPSHOT.pom
#16 1.462 [resolver:install] Installing ome:pom-bio-formats:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 1.466 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 1.467
#16 1.467 jar-formats-api:
#16 1.587 [echo] isSnapshot = true
#16 1.736
#16 1.736 init-title:
#16 1.737 [echo] ----------=========== formats-api ===========----------
#16 1.737
#16 1.737 init-timestamp:
#16 1.744
#16 1.744 init:
#16 1.744
#16 1.744 copy-resources:
#16 1.745 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 1.758 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 1.761
#16 1.761 compile:
#16 1.947 [resolver:resolve] Resolving artifacts
#16 1.973 [javac] Compiling 53 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.242 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 2.843 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 2.843 [javac] import loci.common.ReflectedUniverse;
#16 2.843 [javac] ^
#16 3.144 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.144 [javac] int currentIndex = r.getCoreIndex();
#16 3.144 [javac] ^
#16 3.144 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.144 [javac] r.setCoreIndex(coreIndex);
#16 3.144 [javac] ^
#16 3.144 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.144 [javac] r.setCoreIndex(currentIndex);
#16 3.144 [javac] ^
#16 3.345 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.345 [javac] public void setCoreIndex(int no) {
#16 3.345 [javac] ^
#16 3.345 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.345 [javac] public int getCoreIndex() {
#16 3.345 [javac] ^
#16 3.345 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.345 [javac] public int coreIndexToSeries(int index)
#16 3.345 [javac] ^
#16 3.345 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.345 [javac] public int seriesToCoreIndex(int series)
#16 3.345 [javac] ^
#16 3.345 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.345 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 3.345 [javac] ^
#16 3.345 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.345 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 3.345 [javac] ^
#16 3.346 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.346 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 3.346 [javac] ^
#16 3.346 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.346 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 3.346 [javac] ^
#16 3.346 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.346 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 3.346 [javac] ^
#16 3.547 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 3.547 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 3.547 [javac] ^
#16 3.547 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 3.547 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 3.547 [javac] ^
#16 3.647 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.647 [javac] public void setCoreIndex(int no) {
#16 3.647 [javac] ^
#16 3.647 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.648 [javac] public int getCoreIndex() {
#16 3.648 [javac] ^
#16 3.648 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.648 [javac] public int coreIndexToSeries(int index) {
#16 3.648 [javac] ^
#16 3.648 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.648 [javac] public int seriesToCoreIndex(int series) {
#16 3.648 [javac] ^
#16 3.648 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.648 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 3.648 [javac] ^
#16 3.648 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.648 [javac] return getReader().getCoreMetadataList();
#16 3.648 [javac] ^
#16 3.648 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.648 [javac] return getReader().getCoreIndex();
#16 3.648 [javac] ^
#16 3.648 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.648 [javac] getReader().setCoreIndex(no);
#16 3.648 [javac] ^
#16 3.648 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.649 [javac] return getReader().seriesToCoreIndex(series);
#16 3.649 [javac] ^
#16 3.649 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.649 [javac] return getReader().coreIndexToSeries(index);
#16 3.649 [javac] ^
#16 3.649 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.649 [javac] public void setCoreIndex(int no) {
#16 3.649 [javac] ^
#16 3.649 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.649 [javac] public int getCoreIndex() {
#16 3.649 [javac] ^
#16 3.649 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.649 [javac] public int coreIndexToSeries(int index) {
#16 3.649 [javac] ^
#16 3.649 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.649 [javac] public int seriesToCoreIndex(int series) {
#16 3.649 [javac] ^
#16 3.649 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.649 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 3.650 [javac] ^
#16 3.650 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.650 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 3.650 [javac] ^
#16 3.750 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.750 [javac] return reader.getCoreIndex();
#16 3.750 [javac] ^
#16 3.750 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.750 [javac] reader.setCoreIndex(no);
#16 3.750 [javac] ^
#16 3.750 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.750 [javac] return reader.seriesToCoreIndex(series);
#16 3.750 [javac] ^
#16 3.750 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.750 [javac] return reader.coreIndexToSeries(index);
#16 3.750 [javac] ^
#16 3.851 [javac] Note: Some input files use unchecked or unsafe operations.
#16 3.851 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 3.851 [javac] 36 warnings
#16 3.893
#16 3.893 formats-api.jar:
#16 3.893 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 3.916 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 3.948 [resolver:install] Using default POM (ome:formats-api:8.1.0-SNAPSHOT)
#16 3.952 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.pom
#16 3.955 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.jar
#16 3.956 [resolver:install] Installing ome:formats-api:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 3.958 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 3.959
#16 3.959 deps-turbojpeg:
#16 3.959
#16 3.959 jar-turbojpeg:
#16 4.055 [echo] isSnapshot = true
#16 4.205
#16 4.205 init-title:
#16 4.205 [echo] ----------=========== turbojpeg ===========----------
#16 4.205
#16 4.205 init-timestamp:
#16 4.205
#16 4.205 init:
#16 4.205
#16 4.205 copy-resources:
#16 4.206 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 4.207
#16 4.207 compile:
#16 4.216 [resolver:resolve] Resolving artifacts
#16 4.220 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 4.422 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 5.023 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [deprecation] finalize() in Object has been deprecated
#16 5.023 [javac] protected void finalize() throws Throwable {
#16 5.023 [javac] ^
#16 5.023 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [deprecation] finalize() in Object has been deprecated
#16 5.023 [javac] super.finalize();
#16 5.023 [javac] ^
#16 5.080 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [deprecation] finalize() in Object has been deprecated
#16 5.080 [javac] protected void finalize() throws Throwable {
#16 5.080 [javac] ^
#16 5.080 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [deprecation] finalize() in Object has been deprecated
#16 5.080 [javac] super.finalize();
#16 5.080 [javac] ^
#16 5.080 [javac] 5 warnings
#16 5.081
#16 5.081 jar:
#16 5.085 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 5.269 [resolver:install] Using default POM (ome:turbojpeg:8.1.0-SNAPSHOT)
#16 5.276 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.pom
#16 5.278 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.jar
#16 5.280 [resolver:install] Installing ome:turbojpeg:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 5.283 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 5.285
#16 5.285 deps-formats-bsd:
#16 5.285
#16 5.285 jar-formats-bsd:
#16 5.401 [echo] isSnapshot = true
#16 5.546
#16 5.546 init-title:
#16 5.546 [echo] ----------=========== formats-bsd ===========----------
#16 5.546
#16 5.546 init-timestamp:
#16 5.546
#16 5.546 init:
#16 5.546
#16 5.546 copy-resources:
#16 5.547 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 5.550 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 5.551
#16 5.551 compile:
#16 5.766 [resolver:resolve] Resolving artifacts
#16 5.797 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.006 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 7.107 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 7.107 [javac] import loci.common.ReflectedUniverse;
#16 7.107 [javac] ^
#16 7.507 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.507 [javac] core.size() != reader.getCoreMetadataList().size())
#16 7.507 [javac] ^
#16 7.507 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.507 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 7.507 [javac] ^
#16 7.608 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.608 [javac] int n = reader.getCoreMetadataList().size();
#16 7.608 [javac] ^
#16 7.608 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 7.608 [javac] reader.setCoreIndex(coreIndex);
#16 7.608 [javac] ^
#16 7.608 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.608 [javac] int n = reader.getCoreMetadataList().size();
#16 7.608 [javac] ^
#16 7.608 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.608 [javac] int n = reader.getCoreMetadataList().size();
#16 7.608 [javac] ^
#16 7.608 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 7.608 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 7.608 [javac] ^
#16 7.608 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.608 [javac] int n = reader.getCoreMetadataList().size();
#16 7.608 [javac] ^
#16 7.608 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 7.608 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 7.608 [javac] ^
#16 7.608 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.609 [javac] int n = reader.getCoreMetadataList().size();
#16 7.609 [javac] ^
#16 7.609 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 7.609 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 7.609 [javac] ^
#16 7.609 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 7.609 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 7.609 [javac] ^
#16 7.609 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 7.609 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 7.609 [javac] ^
#16 7.609 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.609 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#16 7.609 [javac] ^
#16 7.609 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.609 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 7.609 [javac] ^
#16 7.609 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.609 [javac] seriesCount = reader.getCoreMetadataList().size();
#16 7.609 [javac] ^
#16 7.609 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.609 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 7.610 [javac] ^
#16 7.610 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.610 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#16 7.610 [javac] ^
#16 7.610 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.610 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 7.610 [javac] ^
#16 7.710 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.710 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#16 7.710 [javac] ^
#16 7.810 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 7.810 [javac] BitWriter out = new BitWriter();
#16 7.810 [javac] ^
#16 7.810 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 7.810 [javac] BitWriter out = new BitWriter();
#16 7.810 [javac] ^
#16 8.011 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:537: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 8.011 [javac] return new Double(v);
#16 8.011 [javac] ^
#16 8.612 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2106: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 8.612 [javac] return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#16 8.612 [javac] ^
#16 8.612 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2113: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 8.612 [javac] return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#16 8.612 [javac] ^
#16 8.612 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2120: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 8.612 [javac] return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#16 8.612 [javac] ^
#16 8.813 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 8.813 [javac] channelNames.put(new Integer(channelNames.size()), value);
#16 8.813 [javac] ^
#16 9.013 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:618: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.013 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 9.013 [javac] ^
#16 9.113 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 9.113 [javac] StreamTokenizer st = new StreamTokenizer(in);
#16 9.113 [javac] ^
#16 9.214 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.214 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 9.214 [javac] ^
#16 9.214 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 9.214 [javac] protected ReflectedUniverse r;
#16 9.214 [javac] ^
#16 9.214 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 9.214 [javac] r = new ReflectedUniverse();
#16 9.214 [javac] ^
#16 9.314 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1043: warning: [deprecation] NM in UNITS has been deprecated
#16 9.314 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 9.314 [javac] ^
#16 9.314 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#16 9.314 [javac] sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 9.314 [javac] ^
#16 9.314 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1088: warning: [deprecation] MM in UNITS has been deprecated
#16 9.314 [javac] String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 9.314 [javac] ^
#16 9.314 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1089: warning: [deprecation] MM in UNITS has been deprecated
#16 9.314 [javac] String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 9.314 [javac] ^
#16 9.314 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1108: warning: [deprecation] MM in UNITS has been deprecated
#16 9.315 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 9.315 [javac] ^
#16 9.315 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1112: warning: [deprecation] MM in UNITS has been deprecated
#16 9.315 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 9.315 [javac] ^
#16 9.315 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1118: warning: [deprecation] MM in UNITS has been deprecated
#16 9.315 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 9.315 [javac] ^
#16 9.315 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1166: warning: [deprecation] MM in UNITS has been deprecated
#16 9.315 [javac] offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 9.315 [javac] ^
#16 9.315 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1170: warning: [deprecation] MM in UNITS has been deprecated
#16 9.315 [javac] offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 9.315 [javac] ^
#16 9.315 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 9.315 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#16 9.315 [javac] ^
#16 9.315 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#16 9.315 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#16 9.315 [javac] ^
#16 9.315 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 9.315 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#16 9.315 [javac] ^
#16 9.315 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#16 9.315 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#16 9.316 [javac] ^
#16 9.416 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 9.416 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 9.416 [javac] ^
#16 9.416 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:320: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 9.416 [javac] doubleResult[i] = new Double(result.get(i).doubleValue());
#16 9.416 [javac] ^
#16 9.416 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:342: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 9.416 [javac] result[i] = new Double(readNumber().doubleValue());
#16 9.416 [javac] ^
#16 9.488 [javac] Note: Some input files use unchecked or unsafe operations.
#16 9.488 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 9.488 [javac] 50 warnings
#16 9.489
#16 9.489 formats-bsd.jar:
#16 9.499 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 9.607 [resolver:install] Using default POM (ome:formats-bsd:8.1.0-SNAPSHOT)
#16 9.611 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.pom
#16 9.632 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.jar
#16 9.634 [resolver:install] Installing ome:formats-bsd:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 9.636 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 9.637
#16 9.637 deps-formats-gpl:
#16 9.637
#16 9.637 jar-formats-gpl:
#16 9.732 [echo] isSnapshot = true
#16 9.876
#16 9.876 init-title:
#16 9.876 [echo] ----------=========== formats-gpl ===========----------
#16 9.876
#16 9.876 init-timestamp:
#16 9.876
#16 9.876 init:
#16 9.876
#16 9.876 copy-resources:
#16 9.876 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 9.878 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 9.879
#16 9.879 compile:
#16 10.25 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 10.50 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 10.53 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom (0 B at 0.0 KB/sec)
#16 10.54 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 10.55 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 10.56 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom (0 B at 0.0 KB/sec)
#16 10.59 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 10.60 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 10.61 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom (0 B at 0.0 KB/sec)
#16 10.65 [resolver:resolve] Resolving artifacts
#16 10.66 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 10.66 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 10.71 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 10.71 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 10.72 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar (0 B at 0.0 KB/sec)
#16 10.72 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar (0 B at 0.0 KB/sec)
#16 10.74 [javac] Compiling 174 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 10.95 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 12.15 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 12.15 [javac] import loci.formats.codec.BitWriter;
#16 12.15 [javac] ^
#16 12.25 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 12.25 [javac] import loci.formats.codec.BitWriter;
#16 12.25 [javac] ^
#16 14.25 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#16 14.25 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#16 14.25 [javac] ^
#16 14.25 [javac] cast to Object for a varargs call
#16 14.25 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#16 14.25 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1257: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.25 [javac] BitWriter bits = null;
#16 14.25 [javac] ^
#16 14.25 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1259: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.25 [javac] bits = new BitWriter(planes[index].length / 8);
#16 14.25 [javac] ^
#16 14.65 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 14.65 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#16 14.65 [javac] ^
#16 14.95 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.95 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 14.95 [javac] ^
#16 14.95 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.95 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 14.95 [javac] ^
#16 15.25 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:170: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 15.25 [javac] Variable variable = group.findVariable(variableName);
#16 15.25 [javac] ^
#16 15.25 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:197: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 15.25 [javac] Variable variable = group.findVariable(variableName);
#16 15.25 [javac] ^
#16 15.25 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:200: warning: [deprecation] getAttributes() in Variable has been deprecated
#16 15.25 [javac] List<Attribute> attributes = variable.getAttributes();
#16 15.25 [javac] ^
#16 15.25 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getName() in CDMNode has been deprecated
#16 15.25 [javac] String groupName = group.getName();
#16 15.25 [javac] ^
#16 15.25 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:239: warning: [deprecation] getAttributes() in Group has been deprecated
#16 15.25 [javac] List<Attribute> attributes = group.getAttributes();
#16 15.25 [javac] ^
#16 15.25 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:247: warning: [deprecation] getName() in CDMNode has been deprecated
#16 15.25 [javac] String variableName = variable.getName();
#16 15.25 [javac] ^
#16 15.25 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:270: warning: [deprecation] findGroup(String) in Group has been deprecated
#16 15.25 [javac] Group nextParent = parent.findGroup(token);
#16 15.25 [javac] ^
#16 15.25 [javac] Note: Some input files use unchecked or unsafe operations.
#16 15.25 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 15.25 [javac] 16 warnings
#16 15.28
#16 15.28 formats-gpl.jar:
#16 15.29 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 15.42 [resolver:install] Using default POM (ome:formats-gpl:8.1.0-SNAPSHOT)
#16 15.42 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.pom
#16 15.48 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.jar
#16 15.48 [resolver:install] Installing ome:formats-gpl:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 15.48 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 15.48
#16 15.48 deps-bio-formats-plugins:
#16 15.48
#16 15.48 jar-bio-formats-plugins:
#16 15.57 [echo] isSnapshot = true
#16 15.71
#16 15.71 init-title:
#16 15.71 [echo] ----------=========== bio-formats_plugins ===========----------
#16 15.71
#16 15.71 init-timestamp:
#16 15.71
#16 15.71 init:
#16 15.71
#16 15.71 copy-resources:
#16 15.71 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 15.71 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 15.72
#16 15.72 compile:
#16 16.01 [resolver:resolve] Resolving artifacts
#16 16.02 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 16.23 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 17.03 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.03 [javac] import loci.common.ReflectedUniverse;
#16 17.03 [javac] ^
#16 17.03 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.03 [javac] import loci.common.ReflectedUniverse;
#16 17.03 [javac] ^
#16 17.43 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 17.43 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 17.43 [javac] ^
#16 17.63 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.63 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 17.63 [javac] ^
#16 17.63 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.63 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 17.63 [javac] ^
#16 17.73 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.73 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 17.73 [javac] ^
#16 17.73 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.73 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 17.73 [javac] ^
#16 18.13 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 18.13 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 18.13 [javac] 8 warnings
#16 18.13
#16 18.13 bio-formats-plugins.jar:
#16 18.14 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 18.17 [resolver:install] Using default POM (ome:bio-formats_plugins:8.1.0-SNAPSHOT)
#16 18.17 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.pom
#16 18.22 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.jar
#16 18.22 [resolver:install] Installing ome:bio-formats_plugins:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 18.23 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 18.23
#16 18.23 deps-bio-formats-tools:
#16 18.23
#16 18.23 jar-bio-formats-tools:
#16 18.40 [echo] isSnapshot = true
#16 18.56
#16 18.56 init-title:
#16 18.56 [echo] ----------=========== bio-formats-tools ===========----------
#16 18.56
#16 18.56 init-timestamp:
#16 18.56
#16 18.56 init:
#16 18.56
#16 18.56 copy-resources:
#16 18.56 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 18.56
#16 18.56 compile:
#16 18.83 [resolver:resolve] Resolving artifacts
#16 18.85 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 19.05 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 20.11 [javac] 1 warning
#16 20.11
#16 20.11 bio-formats-tools.jar:
#16 20.11 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 20.12 [resolver:install] Using default POM (ome:bio-formats-tools:8.1.0-SNAPSHOT)
#16 20.12 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.pom
#16 20.12 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.jar
#16 20.12 [resolver:install] Installing ome:bio-formats-tools:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 20.13 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 20.13
#16 20.13 deps-tests:
#16 20.13
#16 20.13 jar-tests:
#16 20.23 [echo] isSnapshot = true
#16 20.37
#16 20.37 init-title:
#16 20.37 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 20.37
#16 20.37 init-timestamp:
#16 20.37
#16 20.37 init:
#16 20.37
#16 20.37 copy-resources:
#16 20.37 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 20.37
#16 20.37 compile:
#16 20.67 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 20.74 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 20.76 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 21.18 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 21.70 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#16 21.73 [resolver:resolve] Resolving artifacts
#16 21.74 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 21.78 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 21.79 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 22.20 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 22.56 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 22.56 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 22.77 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 23.77 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:605: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 23.77 [javac] int index = unflattenedReader.getCoreIndex();
#16 23.77 [javac] ^
#16 23.77 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:606: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 23.77 [javac] reader.setCoreIndex(index);
#16 23.77 [javac] ^
#16 24.07 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2259: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 24.07 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 24.07 [javac] ^
#16 24.07 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2425: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 24.07 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 24.07 [javac] ^
#16 24.37 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 24.37 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 24.37 [javac] ^
#16 24.37 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 24.37 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 24.37 [javac] ^
#16 24.37 [javac] Note: Some input files use unchecked or unsafe operations.
#16 24.37 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 24.37 [javac] 7 warnings
#16 24.41
#16 24.41 tests.jar:
#16 24.41 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 24.43 [resolver:install] Using default POM (ome:test-suite:8.1.0-SNAPSHOT)
#16 24.43 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.pom
#16 24.43 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.jar
#16 24.43 [resolver:install] Installing ome:test-suite:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 24.43 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 24.44
#16 24.44 jars:
#16 24.44
#16 24.44 copy-jars:
#16 24.44
#16 24.44 deps-formats-api:
#16 24.48 [echo] isSnapshot = true
#16 24.52
#16 24.52 install-pom:
#16 24.65 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/pom-bio-formats-8.1.0-SNAPSHOT.pom
#16 24.66 [resolver:install] Installing ome:pom-bio-formats:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 24.69 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 24.69
#16 24.69 jar-formats-api:
#16 24.77 [echo] isSnapshot = true
#16 24.90
#16 24.90 init-title:
#16 24.90 [echo] ----------=========== formats-api ===========----------
#16 24.90
#16 24.90 init-timestamp:
#16 24.90
#16 24.90 init:
#16 24.90
#16 24.90 copy-resources:
#16 24.91
#16 24.91 compile:
#16 25.04 [resolver:resolve] Resolving artifacts
#16 25.05
#16 25.05 formats-api.jar:
#16 25.06 [resolver:install] Using default POM (ome:formats-api:8.1.0-SNAPSHOT)
#16 25.07 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.pom
#16 25.07 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.jar
#16 25.07 [resolver:install] Installing ome:formats-api:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 25.07 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 25.07
#16 25.07 deps-turbojpeg:
#16 25.07
#16 25.07 jar-turbojpeg:
#16 25.15 [echo] isSnapshot = true
#16 25.28
#16 25.28 init-title:
#16 25.28 [echo] ----------=========== turbojpeg ===========----------
#16 25.28
#16 25.28 init-timestamp:
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#16 25.28 init:
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#16 25.28
#16 25.28 compile:
#16 25.29 [resolver:resolve] Resolving artifacts
#16 25.29
#16 25.29 jar:
#16 25.30 [resolver:install] Using default POM (ome:turbojpeg:8.1.0-SNAPSHOT)
#16 25.30 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.pom
#16 25.30 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.jar
#16 25.31 [resolver:install] Installing ome:turbojpeg:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 25.31 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 25.31
#16 25.31 deps-formats-bsd:
#16 25.31
#16 25.31 jar-formats-bsd:
#16 25.39 [echo] isSnapshot = true
#16 25.52
#16 25.52 init-title:
#16 25.52 [echo] ----------=========== formats-bsd ===========----------
#16 25.52
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#16 25.72 [resolver:resolve] Resolving artifacts
#16 25.74
#16 25.74 formats-bsd.jar:
#16 25.77 [resolver:install] Using default POM (ome:formats-bsd:8.1.0-SNAPSHOT)
#16 25.78 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.pom
#16 25.78 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.jar
#16 25.78 [resolver:install] Installing ome:formats-bsd:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 25.78 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 25.78
#16 25.78 deps-formats-gpl:
#16 25.78
#16 25.78 jar-formats-gpl:
#16 25.87 [echo] isSnapshot = true
#16 26.00
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#16 26.00 [echo] ----------=========== formats-gpl ===========----------
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#16 26.24
#16 26.24 formats-gpl.jar:
#16 26.28 [resolver:install] Using default POM (ome:formats-gpl:8.1.0-SNAPSHOT)
#16 26.28 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.pom
#16 26.29 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.jar
#16 26.29 [resolver:install] Installing ome:formats-gpl:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 26.29 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 26.29
#16 26.29 deps-bio-formats-plugins:
#16 26.29
#16 26.29 jar-bio-formats-plugins:
#16 26.37 [echo] isSnapshot = true
#16 26.50
#16 26.50 init-title:
#16 26.50 [echo] ----------=========== bio-formats_plugins ===========----------
#16 26.50
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#16 26.77
#16 26.77 bio-formats-plugins.jar:
#16 26.79 [resolver:install] Using default POM (ome:bio-formats_plugins:8.1.0-SNAPSHOT)
#16 26.79 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.pom
#16 26.79 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.jar
#16 26.79 [resolver:install] Installing ome:bio-formats_plugins:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 26.79 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 26.79
#16 26.79 deps-bio-formats-tools:
#16 26.80
#16 26.80 jar-bio-formats-tools:
#16 26.89 [echo] isSnapshot = true
#16 27.03
#16 27.03 init-title:
#16 27.03 [echo] ----------=========== bio-formats-tools ===========----------
#16 27.03
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#16 27.03
#16 27.03 init:
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#16 27.03
#16 27.03 compile:
#16 27.29 [resolver:resolve] Resolving artifacts
#16 27.30
#16 27.30 bio-formats-tools.jar:
#16 27.31 [resolver:install] Using default POM (ome:bio-formats-tools:8.1.0-SNAPSHOT)
#16 27.31 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.pom
#16 27.31 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.jar
#16 27.31 [resolver:install] Installing ome:bio-formats-tools:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 27.32 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 27.32
#16 27.32 deps-tests:
#16 27.32
#16 27.32 jar-tests:
#16 27.41 [echo] isSnapshot = true
#16 27.55
#16 27.55 init-title:
#16 27.55 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 27.55
#16 27.55 init-timestamp:
#16 27.55
#16 27.55 init:
#16 27.55
#16 27.55 copy-resources:
#16 27.55
#16 27.55 compile:
#16 27.81 [resolver:resolve] Resolving artifacts
#16 27.82
#16 27.82 tests.jar:
#16 27.83 [resolver:install] Using default POM (ome:test-suite:8.1.0-SNAPSHOT)
#16 27.83 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.pom
#16 27.83 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.jar
#16 27.84 [resolver:install] Installing ome:test-suite:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 27.84 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 27.84
#16 27.84 jars:
#16 27.84
#16 27.84 tools:
#16 27.84 [echo] ----------=========== bioformats_package ===========----------
#16 27.93 [echo] isSnapshot = true
#16 28.12
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#16 28.12
#16 28.12 bundle:
#16 28.37 [resolver:resolve] Resolving artifacts
#16 28.38 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.41 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.0.25-SNAPSHOT/ome-common-6.0.25-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.43 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.46 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.47 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.53 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.55 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.60 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.61 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.84 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.89 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.91 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.98 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.99 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.00 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.00 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.7/joda-time-2.12.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.19 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.1-jre/guava-32.0.1-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.71 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.71 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.71 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.72 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 29.82 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.82 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.3.7-SNAPSHOT/ome-xml-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.88 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.3.7-SNAPSHOT/specification-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 29.97 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.5-SNAPSHOT/ome-jai-0.1.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.11 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.18 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.22 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 30.74 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 30.84 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.94 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 30.98 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 31.36 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.47 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/ome-mdbtools-5.3.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 32.23 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.29 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.13/httpmime-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.30 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.31 [unzip] Expanding: /home/build/.m2/repository/commons-math/commons-math/1.2/commons-math-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.37 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.27/aircompressor-0.27.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.40 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.28.0/sqlite-jdbc-3.28.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.55 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.57 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.58 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.59 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.60 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.63 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.03 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.15 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.61 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 39.18 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 39.75 [resolver:install] Using default POM (ome:bioformats_package:8.1.0-SNAPSHOT)
#16 39.77 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.1.0-SNAPSHOT/bioformats_package-8.1.0-SNAPSHOT.pom
#16 39.77 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.1.0-SNAPSHOT/bioformats_package-8.1.0-SNAPSHOT.jar
#16 39.80 [resolver:install] Installing ome:bioformats_package:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 39.80 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 39.81
#16 39.81 BUILD SUCCESSFUL
#16 39.81 Total time: 39 seconds
#16 DONE 40.3s
#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.0s
#18 exporting to image
#18 exporting layers
#18 exporting layers 3.3s done
#18 writing image sha256:78c45d12351236e17788171b0991240d13cb71ad18cab24ff06ff6ee60c9df4f done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#18 DONE 3.3s
[33m1 warning found (use docker --debug to expand):
[0m - LegacyKeyValueFormat: "ENV key=value" should be used instead of legacy "ENV key value" format (line 30)
Finished: SUCCESS
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