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Skipping 2,122 KB.. Full Log
#14 296.1 [[1;34mINFO[m] 
#14 296.1 [[1;34mINFO[m] [1m--- [0;32mmaven-clean-plugin:3.1.0:clean[m [1m(default-clean)[m @ [36mformats-gpl[0;1m ---[m
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#14 296.1 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mformats-gpl[0;1m ---[m
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#14 296.1 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mformats-gpl[0;1m ---[m
#14 296.1 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 296.1 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 296.1 [[1;34mINFO[m] Storing buildNumber: dea592cd42a2f34ec30ec626385f17204c5d7c73 at timestamp: 1732666607047
#14 296.1 [[1;33mWARNING[m] Cannot get the branch information from the git repository: 
#14 296.1 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 296.1 
#14 296.1 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 296.1 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 296.1 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 296.1 [[1;34mINFO[m] 
#14 296.1 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:resources[m [1m(default-resources)[m @ [36mformats-gpl[0;1m ---[m
#14 296.1 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 296.1 [[1;34mINFO[m] Copying 2 resources
#14 296.1 [[1;34mINFO[m] skip non existing resourceDirectory /bio-formats-build/bioformats/components/formats-gpl/lib
#14 296.1 [[1;34mINFO[m] Copying 0 resource
#14 296.1 [[1;34mINFO[m] Copying 1 resource
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#14 296.1 [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.7.0:compile[m [1m(default-compile)[m @ [36mformats-gpl[0;1m ---[m
#14 296.2 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 296.2 [[1;34mINFO[m] Compiling 174 source files to /bio-formats-build/bioformats/components/formats-gpl/target/classes
#14 298.2 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java: Some input files use or override a deprecated API.
#14 298.2 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java: Recompile with -Xlint:deprecation for details.
#14 298.2 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ImarisHDFReader.java: Some input files use unchecked or unsafe operations.
#14 298.2 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ImarisHDFReader.java: Recompile with -Xlint:unchecked for details.
#14 298.2 [[1;34mINFO[m] 
#14 298.2 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:testResources[m [1m(default-testResources)[m @ [36mformats-gpl[0;1m ---[m
#14 298.2 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 298.2 [[1;34mINFO[m] Copying 24 resources
#14 298.2 [[1;34mINFO[m] 
#14 298.2 [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.7.0:testCompile[m [1m(default-testCompile)[m @ [36mformats-gpl[0;1m ---[m
#14 298.2 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 298.2 [[1;34mINFO[m] Compiling 23 source files to /bio-formats-build/bioformats/components/formats-gpl/target/test-classes
#14 298.4 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/test/loci/formats/utests/InOutCurrentTest.java: /bio-formats-build/bioformats/components/formats-gpl/test/loci/formats/utests/InOutCurrentTest.java uses unchecked or unsafe operations.
#14 298.4 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/test/loci/formats/utests/InOutCurrentTest.java: Recompile with -Xlint:unchecked for details.
#14 298.4 [[1;34mINFO[m] 
#14 298.4 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(default-test)[m @ [36mformats-gpl[0;1m ---[m
#14 298.4 [[1;34mINFO[m] 
#14 298.4 [[1;34mINFO[m] -------------------------------------------------------
#14 298.4 [[1;34mINFO[m]  T E S T S
#14 298.4 [[1;34mINFO[m] -------------------------------------------------------
#14 298.6 [[1;34mINFO[m] Running [1mTestSuite[m
#14 299.8 2024-11-27 00:16:50,722 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.Laser@66f66866 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 299.8 2024-11-27 00:16:50,726 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@4f8caaf3 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 299.8 2024-11-27 00:16:50,779 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.Laser@4287d447 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 299.8 2024-11-27 00:16:50,779 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@3af37506 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 299.9 2024-11-27 00:16:50,829 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@7dcc91fd reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 299.9 2024-11-27 00:16:50,829 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.Laser@36453307 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 299.9 2024-11-27 00:16:50,875 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@49b07ee3 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 299.9 2024-11-27 00:16:50,876 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.Laser@383f3558 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 300.0 2024-11-27 00:16:50,919 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@13e698c7 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 300.0 2024-11-27 00:16:50,919 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.Laser@5a4c638d reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 300.0 2024-11-27 00:16:50,976 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.Laser@17ae7628 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 300.0 2024-11-27 00:16:50,976 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@1136b469 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 300.1 2024-11-27 00:16:51,019 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.Laser@201aa8c1 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 300.1 2024-11-27 00:16:51,019 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@5d58c727 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 300.1 2024-11-27 00:16:51,059 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.Laser@21719a0 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 300.1 2024-11-27 00:16:51,059 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@76b224cd reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 300.4 [[1;34mINFO[m] [1;32mTests run: [0;1;32m99[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.75 s - in [1mTestSuite[m
#14 300.7 [[1;34mINFO[m] 
#14 300.7 [[1;34mINFO[m] Results:
#14 300.7 [[1;34mINFO[m] 
#14 300.7 [[1;34mINFO[m] [1;32mTests run: 99, Failures: 0, Errors: 0, Skipped: 0[m
#14 300.7 [[1;34mINFO[m] 
#14 300.7 [[1;34mINFO[m] 
#14 300.7 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(missing-mdb-test)[m @ [36mformats-gpl[0;1m ---[m
#14 300.7 [[1;34mINFO[m] 
#14 300.7 [[1;34mINFO[m] -------------------------------------------------------
#14 300.7 [[1;34mINFO[m]  T E S T S
#14 300.7 [[1;34mINFO[m] -------------------------------------------------------
#14 300.8 [[1;34mINFO[m] Running [1mTestSuite[m
#14 301.3 [[1;34mINFO[m] [1;32mTests run: [0;1;32m1[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.416 s - in [1mTestSuite[m
#14 301.6 [[1;34mINFO[m] 
#14 301.6 [[1;34mINFO[m] Results:
#14 301.6 [[1;34mINFO[m] 
#14 301.6 [[1;34mINFO[m] [1;32mTests run: 1, Failures: 0, Errors: 0, Skipped: 0[m
#14 301.6 [[1;34mINFO[m] 
#14 301.6 [[1;34mINFO[m] 
#14 301.6 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(missing-poi-test)[m @ [36mformats-gpl[0;1m ---[m
#14 301.6 [[1;34mINFO[m] 
#14 301.6 [[1;34mINFO[m] -------------------------------------------------------
#14 301.6 [[1;34mINFO[m]  T E S T S
#14 301.6 [[1;34mINFO[m] -------------------------------------------------------
#14 301.7 [[1;34mINFO[m] Running [1mTestSuite[m
#14 302.1 [[1;34mINFO[m] [1;32mTests run: [0;1;32m1[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.402 s - in [1mTestSuite[m
#14 302.5 [[1;34mINFO[m] 
#14 302.5 [[1;34mINFO[m] Results:
#14 302.5 [[1;34mINFO[m] 
#14 302.5 [[1;34mINFO[m] [1;32mTests run: 1, Failures: 0, Errors: 0, Skipped: 0[m
#14 302.5 [[1;34mINFO[m] 
#14 302.5 [[1;34mINFO[m] 
#14 302.5 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(missing-netcdf-test)[m @ [36mformats-gpl[0;1m ---[m
#14 302.5 [[1;34mINFO[m] 
#14 302.5 [[1;34mINFO[m] -------------------------------------------------------
#14 302.5 [[1;34mINFO[m]  T E S T S
#14 302.5 [[1;34mINFO[m] -------------------------------------------------------
#14 302.6 [[1;34mINFO[m] Running [1mTestSuite[m
#14 303.0 [[1;34mINFO[m] [1;32mTests run: [0;1;32m1[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.411 s - in [1mTestSuite[m
#14 303.4 [[1;34mINFO[m] 
#14 303.4 [[1;34mINFO[m] Results:
#14 303.4 [[1;34mINFO[m] 
#14 303.4 [[1;34mINFO[m] [1;32mTests run: 1, Failures: 0, Errors: 0, Skipped: 0[m
#14 303.4 [[1;34mINFO[m] 
#14 303.4 [[1;34mINFO[m] 
#14 303.4 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:jar[m [1m(default-jar)[m @ [36mformats-gpl[0;1m ---[m
#14 303.4 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.1.0-SNAPSHOT.jar
#14 303.4 [[1;34mINFO[m] 
#14 303.4 [[1;34mINFO[m] [1m>>> [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m > [0;1mgenerate-sources[m @ [36mformats-gpl[0;1m >>>[m
#14 303.4 [[1;34mINFO[m] 
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#14 303.4 [[1;34mINFO[m] 
#14 303.4 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mformats-gpl[0;1m ---[m
#14 303.4 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 303.4 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 303.4 [[1;34mINFO[m] Storing buildNumber: dea592cd42a2f34ec30ec626385f17204c5d7c73 at timestamp: 1732666614357
#14 303.4 [[1;33mWARNING[m] Cannot get the branch information from the git repository: 
#14 303.4 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 303.4 
#14 303.4 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 303.4 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 303.4 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 303.4 [[1;34mINFO[m] 
#14 303.4 [[1;34mINFO[m] [1m<<< [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m < [0;1mgenerate-sources[m @ [36mformats-gpl[0;1m <<<[m
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#14 303.4 [[1;34mINFO[m] [1m--- [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[m @ [36mformats-gpl[0;1m ---[m
#14 303.5 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.1.0-SNAPSHOT-sources.jar
#14 303.5 [[1;34mINFO[m] 
#14 303.5 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:test-jar[m [1m(default)[m @ [36mformats-gpl[0;1m ---[m
#14 303.5 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.1.0-SNAPSHOT-tests.jar
#14 303.5 [[1;34mINFO[m] 
#14 303.5 [[1;34mINFO[m] [1m--- [0;32mmaven-install-plugin:2.5.2:install[m [1m(default-install)[m @ [36mformats-gpl[0;1m ---[m
#14 303.5 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.1.0-SNAPSHOT.jar to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.jar
#14 303.5 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.pom
#14 303.5 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.1.0-SNAPSHOT-sources.jar to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT-sources.jar
#14 303.5 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.1.0-SNAPSHOT-tests.jar to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT-tests.jar
#14 303.5 [[1;34mINFO[m] 
#14 303.5 [[1;34mINFO[m] [1m----------------------< [0;36mome:bio-formats_plugins[0;1m >-----------------------[m
#14 303.5 [[1;34mINFO[m] [1mBuilding Bio-Formats Plugins for ImageJ 8.1.0-SNAPSHOT           [17/24][m
#14 303.5 [[1;34mINFO[m] [1m--------------------------------[ jar ]---------------------------------[m
#14 303.5 Downloading from central: https://repo.maven.apache.org/maven2/net/imagej/ij/1.54c/ij-1.54c.pom
#14 303.6 Progress (1): 4.1/7.9 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/net/imagej/ij/1.54c/ij-1.54c.pom (7.9 kB at 78 kB/s)
#14 303.6 Downloading from central: https://repo.maven.apache.org/maven2/net/imagej/ij/1.54c/ij-1.54c.jar
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Downloaded from central: https://repo.maven.apache.org/maven2/net/imagej/ij/1.54c/ij-1.54c.jar (2.5 MB at 12 MB/s)
#14 303.8 [[1;34mINFO[m] 
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#14 303.8 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 303.8 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 303.8 [[1;34mINFO[m] Storing buildNumber: dea592cd42a2f34ec30ec626385f17204c5d7c73 at timestamp: 1732666614779
#14 303.8 [[1;33mWARNING[m] Cannot get the branch information from the git repository: 
#14 303.8 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 303.8 
#14 303.8 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 303.8 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 303.9 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
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#14 303.9 [[1;34mINFO[m] Copying 3 resources
#14 303.9 [[1;34mINFO[m] skip non existing resourceDirectory /bio-formats-build/bioformats/components/bio-formats-plugins/lib
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#14 303.9 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 303.9 [[1;34mINFO[m] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/target/classes
#14 304.4 [[1;34mINFO[m] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java: Some input files use or override a deprecated API.
#14 304.4 [[1;34mINFO[m] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java: Recompile with -Xlint:deprecation for details.
#14 304.4 [[1;34mINFO[m] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#14 304.4 [[1;34mINFO[m] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java: Recompile with -Xlint:unchecked for details.
#14 304.4 [[1;34mINFO[m] 
#14 304.4 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:testResources[m [1m(default-testResources)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 304.4 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 304.4 [[1;34mINFO[m] Copying 1 resource
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#14 304.4 [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.7.0:testCompile[m [1m(default-testCompile)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 304.4 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 304.4 [[1;34mINFO[m] Compiling 3 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/target/test-classes
#14 304.6 [[1;34mINFO[m] 
#14 304.6 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(default-test)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 304.6 [[1;34mINFO[m] 
#14 304.6 [[1;34mINFO[m] -------------------------------------------------------
#14 304.6 [[1;34mINFO[m]  T E S T S
#14 304.6 [[1;34mINFO[m] -------------------------------------------------------
#14 304.7 [[1;34mINFO[m] Running [1mTestSuite[m
#14 306.2 Warning: Data has too many channels for Colorized color mode
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#14 306.6 Warning: Data has too many channels for Colorized color mode
#14 306.6 Warning: Data has too many channels for Composite color mode
#14 306.6 Warning: Data has too many channels for Composite color mode
#14 306.9 Warning: Data has too many channels for Composite color mode
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#14 307.0 Warning: Data has too many channels for Composite color mode
#14 307.0 Warning: Data has too many channels for Composite color mode
#14 307.0 Warning: Data has too many channels for Composite color mode
#14 307.0 Warning: Data has too many channels for Composite color mode
#14 307.0 Warning: Data has too many channels for Composite color mode
#14 307.0 Warning: Data has too many channels for Composite color mode
#14 307.0 Warning: Data has too many channels for Composite color mode
#14 307.0 Warning: Data has too many channels for Composite color mode
#14 307.0 Warning: Data has too many channels for Composite color mode
#14 307.0 Warning: Data has too many channels for Composite color mode
#14 307.0 Warning: Data has too many channels for Composite color mode
#14 307.0 Warning: Data has too many channels for Composite color mode
#14 307.1 Warning: Data has too many channels for Composite color mode
#14 307.4 Warning: Data has too many channels for Composite color mode
#14 307.4 Warning: Data has too many channels for Composite color mode
#14 307.4 Warning: Data has too many channels for Composite color mode
#14 307.4 Warning: Data has too many channels for Composite color mode
#14 307.4 Warning: Data has too many channels for Composite color mode
#14 307.4 Warning: Data has too many channels for Composite color mode
#14 307.4 Warning: Data has too many channels for Composite color mode
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#14 307.5 Warning: Data has too many channels for Composite color mode
#14 307.5 Warning: Data has too many channels for Composite color mode
#14 307.5 Warning: Data has too many channels for Composite color mode
#14 307.5 Warning: Data has too many channels for Composite color mode
#14 307.5 Warning: Data has too many channels for Composite color mode
#14 307.5 Warning: Data has too many channels for Composite color mode
#14 307.5 Warning: Data has too many channels for Composite color mode
#14 307.5 Warning: Data has too many channels for Composite color mode
#14 307.5 Warning: Data has too many channels for Composite color mode
#14 307.6 Warning: Data has too many channels for Composite color mode
#14 307.9 Warning: Data has too many channels for Composite color mode
#14 307.9 Warning: Data has too many channels for Composite color mode
#14 307.9 Warning: Data has too many channels for Composite color mode
#14 307.9 Warning: Data has too many channels for Composite color mode
#14 307.9 Warning: Data has too many channels for Composite color mode
#14 307.9 Warning: Data has too many channels for Composite color mode
#14 307.9 Warning: Data has too many channels for Composite color mode
#14 307.9 Warning: Data has too many channels for Composite color mode
#14 308.0 Warning: Data has too many channels for Composite color mode
#14 308.0 Warning: Data has too many channels for Composite color mode
#14 308.0 Warning: Data has too many channels for Composite color mode
#14 308.0 Warning: Data has too many channels for Composite color mode
#14 308.0 Warning: Data has too many channels for Composite color mode
#14 308.0 Warning: Data has too many channels for Composite color mode
#14 308.0 Warning: Data has too many channels for Composite color mode
#14 308.0 Warning: Data has too many channels for Composite color mode
#14 308.4 Warning: Data has too many channels for Composite color mode
#14 308.4 Warning: Data has too many channels for Composite color mode
#14 308.4 Warning: Data has too many channels for Composite color mode
#14 308.4 Warning: Data has too many channels for Composite color mode
#14 308.4 Warning: Data has too many channels for Composite color mode
#14 308.4 Warning: Data has too many channels for Composite color mode
#14 308.4 Warning: Data has too many channels for Composite color mode
#14 308.4 Warning: Data has too many channels for Composite color mode
#14 308.5 Warning: Data has too many channels for Composite color mode
#14 308.5 Warning: Data has too many channels for Composite color mode
#14 308.5 Warning: Data has too many channels for Composite color mode
#14 308.5 Warning: Data has too many channels for Composite color mode
#14 308.5 Warning: Data has too many channels for Composite color mode
#14 308.5 Warning: Data has too many channels for Composite color mode
#14 308.5 Warning: Data has too many channels for Composite color mode
#14 308.5 Warning: Data has too many channels for Composite color mode
#14 308.6 Warning: Data has too many channels for Custom color mode
#14 308.6 Warning: Data has too many channels for Custom color mode
#14 308.6 Warning: Data has too many channels for Custom color mode
#14 308.6 Warning: Data has too many channels for Custom color mode
#14 308.7 Warning: Data has too many channels for Custom color mode
#14 308.7 Warning: Data has too many channels for Custom color mode
#14 308.7 Warning: Data has too many channels for Custom color mode
#14 308.7 Warning: Data has too many channels for Custom color mode
#14 308.8 Warning: Data has too many channels for Default color mode
#14 308.8 Warning: Data has too many channels for Default color mode
#14 308.8 Warning: Data has too many channels for Default color mode
#14 308.8 Warning: Data has too many channels for Default color mode
#14 308.8 Warning: Data has too many channels for Default color mode
#14 308.9 Warning: Data has too many channels for Default color mode
#14 308.9 Warning: Data has too many channels for Default color mode
#14 308.9 Warning: Data has too many channels for Default color mode
#14 308.9 Warning: Data has too many channels for Default color mode
#14 309.0 Warning: Data has too many channels for Default color mode
#14 309.0 Warning: Data has too many channels for Default color mode
#14 309.0 Warning: Data has too many channels for Default color mode
#14 309.0 Warning: Data has too many channels for Default color mode
#14 309.1 Warning: Data has too many channels for Default color mode
#14 309.1 Warning: Data has too many channels for Default color mode
#14 309.1 Warning: Data has too many channels for Default color mode
#14 309.1 Warning: Data has too many channels for Grayscale color mode
#14 309.2 Warning: Data has too many channels for Grayscale color mode
#14 309.2 Warning: Data has too many channels for Grayscale color mode
#14 309.2 Warning: Data has too many channels for Grayscale color mode
#14 309.2 Warning: Data has too many channels for Grayscale color mode
#14 309.2 Warning: Data has too many channels for Grayscale color mode
#14 309.3 Warning: Data has too many channels for Grayscale color mode
#14 309.3 Warning: Data has too many channels for Grayscale color mode
#14 309.4 Warning: Data has too many channels for Colorized color mode
#14 309.4 Warning: Data has too many channels for Colorized color mode
#14 309.4 Warning: Data has too many channels for Colorized color mode
#14 310.0 Warning: Data has too many channels for Default color mode
#14 310.2 [[1;34mINFO[m] [1;32mTests run: [0;1;32m30[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 5.476 s - in [1mTestSuite[m
#14 310.5 [[1;34mINFO[m] 
#14 310.5 [[1;34mINFO[m] Results:
#14 310.5 [[1;34mINFO[m] 
#14 310.5 [[1;34mINFO[m] [1;32mTests run: 30, Failures: 0, Errors: 0, Skipped: 0[m
#14 310.5 [[1;34mINFO[m] 
#14 310.5 [[1;34mINFO[m] 
#14 310.5 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:jar[m [1m(default-jar)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 310.5 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.1.0-SNAPSHOT.jar
#14 310.5 [[1;34mINFO[m] 
#14 310.5 [[1;34mINFO[m] [1m>>> [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m > [0;1mgenerate-sources[m @ [36mbio-formats_plugins[0;1m >>>[m
#14 310.5 [[1;34mINFO[m] 
#14 310.5 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 310.5 [[1;34mINFO[m] 
#14 310.5 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 310.5 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 310.5 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 310.5 [[1;34mINFO[m] Storing buildNumber: dea592cd42a2f34ec30ec626385f17204c5d7c73 at timestamp: 1732666621482
#14 310.6 [[1;33mWARNING[m] Cannot get the branch information from the git repository: 
#14 310.6 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 310.6 
#14 310.6 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 310.6 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 310.6 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 310.6 [[1;34mINFO[m] 
#14 310.6 [[1;34mINFO[m] [1m<<< [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m < [0;1mgenerate-sources[m @ [36mbio-formats_plugins[0;1m <<<[m
#14 310.6 [[1;34mINFO[m] 
#14 310.6 [[1;34mINFO[m] 
#14 310.6 [[1;34mINFO[m] [1m--- [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 310.6 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.1.0-SNAPSHOT-sources.jar
#14 310.6 [[1;34mINFO[m] 
#14 310.6 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:test-jar[m [1m(default)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 310.6 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.1.0-SNAPSHOT-tests.jar
#14 310.6 [[1;34mINFO[m] 
#14 310.6 [[1;34mINFO[m] [1m--- [0;32mmaven-install-plugin:2.5.2:install[m [1m(default-install)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 310.6 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.1.0-SNAPSHOT.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.jar
#14 310.6 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.pom
#14 310.6 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.1.0-SNAPSHOT-sources.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT-sources.jar
#14 310.6 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.1.0-SNAPSHOT-tests.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT-tests.jar
#14 310.6 [[1;34mINFO[m] 
#14 310.6 [[1;34mINFO[m] [1m-----------------------< [0;36mome:bio-formats-tools[0;1m >------------------------[m
#14 310.6 [[1;34mINFO[m] [1mBuilding Bio-Formats command line tools 8.1.0-SNAPSHOT           [18/24][m
#14 310.6 [[1;34mINFO[m] [1m--------------------------------[ jar ]---------------------------------[m
#14 310.6 [[1;34mINFO[m] 
#14 310.6 [[1;34mINFO[m] [1m--- [0;32mmaven-clean-plugin:3.1.0:clean[m [1m(default-clean)[m @ [36mbio-formats-tools[0;1m ---[m
#14 310.6 [[1;34mINFO[m] 
#14 310.6 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mbio-formats-tools[0;1m ---[m
#14 310.6 [[1;34mINFO[m] 
#14 310.6 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mbio-formats-tools[0;1m ---[m
#14 310.6 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-tools' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 310.6 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-tools
#14 310.6 [[1;34mINFO[m] Storing buildNumber: dea592cd42a2f34ec30ec626385f17204c5d7c73 at timestamp: 1732666621555
#14 310.6 [[1;33mWARNING[m] Cannot get the branch information from the git repository: 
#14 310.6 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 310.6 
#14 310.6 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-tools' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 310.6 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-tools
#14 310.6 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 310.6 [[1;34mINFO[m] 
#14 310.6 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:resources[m [1m(default-resources)[m @ [36mbio-formats-tools[0;1m ---[m
#14 310.6 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 310.6 [[1;34mINFO[m] Copying 0 resource
#14 310.6 [[1;34mINFO[m] skip non existing resourceDirectory /bio-formats-build/bioformats/components/bio-formats-tools/lib
#14 310.6 [[1;34mINFO[m] Copying 0 resource
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#14 310.6 [[1;34mINFO[m] 
#14 310.6 [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.7.0:compile[m [1m(default-compile)[m @ [36mbio-formats-tools[0;1m ---[m
#14 310.6 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 310.6 [[1;34mINFO[m] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/target/classes
#14 310.8 [[1;34mINFO[m] 
#14 310.8 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:testResources[m [1m(default-testResources)[m @ [36mbio-formats-tools[0;1m ---[m
#14 310.8 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 310.8 [[1;34mINFO[m] Copying 1 resource
#14 310.8 [[1;34mINFO[m] 
#14 310.8 [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.7.0:testCompile[m [1m(default-testCompile)[m @ [36mbio-formats-tools[0;1m ---[m
#14 310.8 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 310.8 [[1;34mINFO[m] Compiling 1 source file to /bio-formats-build/bioformats/components/bio-formats-tools/target/test-classes
#14 310.9 [[1;34mINFO[m] 
#14 310.9 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(default-test)[m @ [36mbio-formats-tools[0;1m ---[m
#14 310.9 [[1;34mINFO[m] 
#14 310.9 [[1;34mINFO[m] -------------------------------------------------------
#14 310.9 [[1;34mINFO[m]  T E S T S
#14 310.9 [[1;34mINFO[m] -------------------------------------------------------
#14 311.1 [[1;34mINFO[m] Running loci.formats.tools.[1mImageConverterTest[m
#14 375.8 [[1;34mINFO[m] [1;32mTests run: [0;1;32m55[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 64.747 s - in loci.formats.tools.[1mImageConverterTest[m
#14 376.2 [[1;34mINFO[m] 
#14 376.2 [[1;34mINFO[m] Results:
#14 376.2 [[1;34mINFO[m] 
#14 376.2 [[1;34mINFO[m] [1;32mTests run: 55, Failures: 0, Errors: 0, Skipped: 0[m
#14 376.2 [[1;34mINFO[m] 
#14 376.2 [[1;34mINFO[m] 
#14 376.2 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:jar[m [1m(default-jar)[m @ [36mbio-formats-tools[0;1m ---[m
#14 376.2 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.1.0-SNAPSHOT.jar
#14 376.2 [[1;34mINFO[m] 
#14 376.2 [[1;34mINFO[m] [1m>>> [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m > [0;1mgenerate-sources[m @ [36mbio-formats-tools[0;1m >>>[m
#14 376.2 [[1;34mINFO[m] 
#14 376.2 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mbio-formats-tools[0;1m ---[m
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#14 376.2 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.pom
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#14 376.3 [[1;34mINFO[m] 
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#14 376.3 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bundles/bioformats_package' && 'git' 'rev-parse' '--verify' 'HEAD'
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#14 376.3 [[1;34mINFO[m] Storing buildNumber: dea592cd42a2f34ec30ec626385f17204c5d7c73 at timestamp: 1732666687253
#14 376.3 [[1;33mWARNING[m] Cannot get the branch information from the git repository: 
#14 376.3 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 376.3 
#14 376.3 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bundles/bioformats_package' && 'git' 'rev-parse' '--verify' 'HEAD'
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#14 376.3 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bundles/bioformats_package' && 'git' 'rev-parse' '--verify' 'HEAD'
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#14 376.3 
#14 376.3 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bundles/bioformats_package' && 'git' 'rev-parse' '--verify' 'HEAD'
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#14 376.5 [[1;34mINFO[m] Reading assembly descriptor: assembly.xml
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#14 376.8 
#14 376.8 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/maven-bundle-plugin/5.1.8/maven-bundle-plugin-5.1.8.pom
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#14 377.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/org.apache.felix.utils/1.6.0/org.apache.felix.utils-1.6.0.pom
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#14 377.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-settings-builder/3.3.9/maven-settings-builder-3.3.9.pom
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#14 377.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-builder-support/3.3.9/maven-builder-support-3.3.9.pom
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#14 377.7 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interpolation/1.21/plexus-interpolation-1.21.pom
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#14 377.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-repository-metadata/3.3.9/maven-repository-metadata-3.3.9.pom
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#14 377.8 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-artifact/3.3.9/maven-artifact-3.3.9.pom
#14 377.8 Progress (1): 2.1 kB
                    
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#14 377.8 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-api/3.3.9/maven-plugin-api-3.3.9.pom
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#14 377.9 Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/sisu/org.eclipse.sisu.plexus/0.3.2/org.eclipse.sisu.plexus-0.3.2.pom
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#14 377.9 Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/sisu/sisu-plexus/0.3.2/sisu-plexus-0.3.2.pom
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#14 377.9 Downloading from central: https://repo.maven.apache.org/maven2/javax/enterprise/cdi-api/1.0/cdi-api-1.0.pom
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#14 377.9 Downloading from central: https://repo.maven.apache.org/maven2/org/jboss/weld/weld-api-parent/1.0/weld-api-parent-1.0.pom
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#14 378.0 Downloading from central: https://repo.maven.apache.org/maven2/org/jboss/weld/weld-api-bom/1.0/weld-api-bom-1.0.pom
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#14 378.0 Downloading from central: https://repo.maven.apache.org/maven2/org/jboss/weld/weld-parent/6/weld-parent-6.pom
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#14 378.0 Downloading from central: https://repo.maven.apache.org/maven2/javax/annotation/jsr250-api/1.0/jsr250-api-1.0.pom
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#14 378.1 Progress (1): 2.6 kB
                    
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#14 378.1 Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/sisu/sisu-inject/0.3.2/sisu-inject-0.3.2.pom
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#14 378.1 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-classworlds/2.5.2/plexus-classworlds-2.5.2.pom
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#14 378.1 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-utils/3.0.17/plexus-utils-3.0.17.pom
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#14 378.2 Downloading from central: https://repo.maven.apache.org/maven2/com/google/guava/guava-parent/18.0/guava-parent-18.0.pom
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#14 378.2 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-aether-provider/3.3.9/maven-aether-provider-3.3.9.pom
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#14 378.3 Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/aether/aether-api/1.0.2.v20150114/aether-api-1.0.2.v20150114.pom
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Down
#14 378.5 [output clipped, log limit 2MiB reached]
#14 487.1 SLF4J: No SLF4J providers were found.
#14 487.1 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 487.1 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 DONE 498.7s

#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.0s

#16 [12/13] RUN ant jars tools
#16 0.833 Buildfile: /bio-formats-build/bioformats/build.xml
#16 1.905      [echo] isSnapshot = true
#16 4.006 
#16 4.006 copy-jars:
#16 4.006 
#16 4.006 deps-formats-api:
#16 4.087      [echo] isSnapshot = true
#16 4.141 
#16 4.141 install-pom:
#16 4.315 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/pom-bio-formats-8.1.0-SNAPSHOT.pom
#16 4.516 [resolver:install] Installing ome:pom-bio-formats:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 4.520 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 4.522 
#16 4.522 jar-formats-api:
#16 4.629      [echo] isSnapshot = true
#16 4.785 
#16 4.785 init-title:
#16 4.786      [echo] ----------=========== formats-api ===========----------
#16 4.786 
#16 4.786 init-timestamp:
#16 4.792 
#16 4.792 init:
#16 4.792 
#16 4.792 copy-resources:
#16 4.794     [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 4.806      [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 4.809 
#16 4.809 compile:
#16 4.990 [resolver:resolve] Resolving artifacts
#16 5.016     [javac] Compiling 53 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 5.275     [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 5.876     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 5.876     [javac] import loci.common.ReflectedUniverse;
#16 5.876     [javac]                   ^
#16 6.076     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 6.076     [javac]     int currentIndex = r.getCoreIndex();
#16 6.076     [javac]                         ^
#16 6.076     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.077     [javac]     r.setCoreIndex(coreIndex);
#16 6.077     [javac]      ^
#16 6.077     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.077     [javac]     r.setCoreIndex(currentIndex);
#16 6.077     [javac]      ^
#16 6.277     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.277     [javac]   public void setCoreIndex(int no) {
#16 6.277     [javac]               ^
#16 6.277     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 6.277     [javac]   public int getCoreIndex() {
#16 6.277     [javac]              ^
#16 6.277     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 6.277     [javac]   public int coreIndexToSeries(int index)
#16 6.278     [javac]              ^
#16 6.278     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 6.278     [javac]   public int seriesToCoreIndex(int series)
#16 6.278     [javac]              ^
#16 6.278     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.278     [javac]   public List<CoreMetadata> getCoreMetadataList() {
#16 6.278     [javac]                             ^
#16 6.278     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.278     [javac]     if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 6.278     [javac]                                              ^
#16 6.278     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.278     [javac]     if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 6.278     [javac]                                              ^
#16 6.278     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.278     [javac]       core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 6.278     [javac]                                                      ^
#16 6.278     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.278     [javac]       core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 6.278     [javac]                                                      ^
#16 6.379     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 6.379     [javac]     ReflectedUniverse r = new ReflectedUniverse();
#16 6.379     [javac]     ^
#16 6.379     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 6.379     [javac]     ReflectedUniverse r = new ReflectedUniverse();
#16 6.379     [javac]                               ^
#16 6.479     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.479     [javac]   public void setCoreIndex(int no) {
#16 6.479     [javac]               ^
#16 6.479     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 6.479     [javac]   public int getCoreIndex() {
#16 6.479     [javac]              ^
#16 6.480     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 6.480     [javac]   public int coreIndexToSeries(int index) {
#16 6.480     [javac]              ^
#16 6.480     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 6.480     [javac]   public int seriesToCoreIndex(int series) {
#16 6.480     [javac]              ^
#16 6.480     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.480     [javac]   public List<CoreMetadata> getCoreMetadataList() {
#16 6.480     [javac]                             ^
#16 6.480     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.480     [javac]     return getReader().getCoreMetadataList();
#16 6.480     [javac]                       ^
#16 6.580     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 6.580     [javac]     return getReader().getCoreIndex();
#16 6.581     [javac]                       ^
#16 6.581     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.581     [javac]     getReader().setCoreIndex(no);
#16 6.581     [javac]                ^
#16 6.581     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 6.581     [javac]     return getReader().seriesToCoreIndex(series);
#16 6.581     [javac]                       ^
#16 6.581     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 6.581     [javac]     return getReader().coreIndexToSeries(index);
#16 6.581     [javac]                       ^
#16 6.581     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.581     [javac]   public void setCoreIndex(int no) {
#16 6.581     [javac]               ^
#16 6.581     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 6.581     [javac]   public int getCoreIndex() {
#16 6.581     [javac]              ^
#16 6.581     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 6.581     [javac]   public int coreIndexToSeries(int index) {
#16 6.581     [javac]              ^
#16 6.581     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 6.581     [javac]   public int seriesToCoreIndex(int series) {
#16 6.581     [javac]              ^
#16 6.581     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.581     [javac]   public List<CoreMetadata> getCoreMetadataList() {
#16 6.581     [javac]                             ^
#16 6.581     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.581     [javac]     List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 6.581     [javac]                                        ^
#16 6.581     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 6.582     [javac]     return reader.getCoreIndex();
#16 6.582     [javac]                  ^
#16 6.582     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.582     [javac]     reader.setCoreIndex(no);
#16 6.582     [javac]           ^
#16 6.582     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 6.582     [javac]     return reader.seriesToCoreIndex(series);
#16 6.582     [javac]                  ^
#16 6.582     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 6.582     [javac]     return reader.coreIndexToSeries(index);
#16 6.582     [javac]                  ^
#16 6.778     [javac] Note: Some input files use unchecked or unsafe operations.
#16 6.778     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 6.778     [javac] 36 warnings
#16 6.778 
#16 6.778 formats-api.jar:
#16 6.779     [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 6.802       [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 6.833 [resolver:install] Using default POM (ome:formats-api:8.1.0-SNAPSHOT)
#16 6.837 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.pom
#16 6.838 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.jar
#16 6.839 [resolver:install] Installing ome:formats-api:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 6.842 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 6.842 
#16 6.842 deps-turbojpeg:
#16 6.842 
#16 6.842 jar-turbojpeg:
#16 6.939      [echo] isSnapshot = true
#16 7.089 
#16 7.089 init-title:
#16 7.089      [echo] ----------=========== turbojpeg ===========----------
#16 7.089 
#16 7.089 init-timestamp:
#16 7.089 
#16 7.089 init:
#16 7.089 
#16 7.089 copy-resources:
#16 7.090     [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 7.091 
#16 7.091 compile:
#16 7.100 [resolver:resolve] Resolving artifacts
#16 7.103     [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 7.306     [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 7.906     [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [deprecation] finalize() in Object has been deprecated
#16 7.906     [javac]   protected void finalize() throws Throwable {
#16 7.906     [javac]                  ^
#16 7.906     [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [deprecation] finalize() in Object has been deprecated
#16 7.906     [javac]       super.finalize();
#16 7.906     [javac]            ^
#16 7.906     [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [deprecation] finalize() in Object has been deprecated
#16 7.906     [javac]   protected void finalize() throws Throwable {
#16 7.907     [javac]                  ^
#16 7.907     [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [deprecation] finalize() in Object has been deprecated
#16 7.907     [javac]       super.finalize();
#16 7.907     [javac]            ^
#16 7.949     [javac] 5 warnings
#16 7.949 
#16 7.949 jar:
#16 7.954       [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 8.138 [resolver:install] Using default POM (ome:turbojpeg:8.1.0-SNAPSHOT)
#16 8.151 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.pom
#16 8.238 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.jar
#16 8.240 [resolver:install] Installing ome:turbojpeg:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 8.244 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 8.246 
#16 8.246 deps-formats-bsd:
#16 8.246 
#16 8.246 jar-formats-bsd:
#16 8.360      [echo] isSnapshot = true
#16 8.496 
#16 8.496 init-title:
#16 8.496      [echo] ----------=========== formats-bsd ===========----------
#16 8.496 
#16 8.496 init-timestamp:
#16 8.497 
#16 8.497 init:
#16 8.497 
#16 8.497 copy-resources:
#16 8.497     [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 8.500      [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 8.501 
#16 8.501 compile:
#16 8.705 [resolver:resolve] Resolving artifacts
#16 8.731     [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 8.940     [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 10.04     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 10.04     [javac] import loci.common.ReflectedUniverse;
#16 10.04     [javac]                   ^
#16 10.44     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.44     [javac]       core.size() != reader.getCoreMetadataList().size())
#16 10.44     [javac]                            ^
#16 10.44     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.44     [javac]       List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 10.44     [javac]                                          ^
#16 10.44     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.44     [javac]     int n = reader.getCoreMetadataList().size();
#16 10.44     [javac]                   ^
#16 10.44     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 10.44     [javac]     reader.setCoreIndex(coreIndex);
#16 10.44     [javac]           ^
#16 10.44     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.44     [javac]     int n = reader.getCoreMetadataList().size();
#16 10.44     [javac]                   ^
#16 10.44     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.44     [javac]     int n = reader.getCoreMetadataList().size();
#16 10.44     [javac]                   ^
#16 10.44     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 10.44     [javac]     if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 10.44     [javac]                                         ^
#16 10.44     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.44     [javac]     int n = reader.getCoreMetadataList().size();
#16 10.44     [javac]                   ^
#16 10.44     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 10.44     [javac]     if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 10.44     [javac]                                         ^
#16 10.44     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.44     [javac]     int n = reader.getCoreMetadataList().size();
#16 10.44     [javac]                   ^
#16 10.44     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 10.44     [javac]     if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 10.44     [javac]                                  ^
#16 10.44     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 10.44     [javac]     return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 10.44     [javac]                  ^
#16 10.44     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 10.44     [javac]     return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 10.44     [javac]                                              ^
#16 10.44     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.44     [javac]     return noStitch ? reader.getCoreMetadataList() : core;
#16 10.44     [javac]                             ^
#16 10.44     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.44     [javac]     if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 10.44     [javac]               ^
#16 10.44     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.44     [javac]       seriesCount = reader.getCoreMetadataList().size();
#16 10.44     [javac]                           ^
#16 10.44     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.44     [javac]       if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 10.44     [javac]                 ^
#16 10.44     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.44     [javac]     if (reader.getCoreMetadataList().size() > 1) return 0;
#16 10.44     [javac]               ^
#16 10.44     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.44     [javac]       r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 10.44     [javac]                            ^
#16 10.64     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.64     [javac]     int seriesCount = unwrap().getCoreMetadataList().size();
#16 10.64     [javac]                               ^
#16 10.74     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 10.74     [javac]     BitWriter out = new BitWriter();
#16 10.74     [javac]     ^
#16 10.74     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 10.74     [javac]     BitWriter out = new BitWriter();
#16 10.74     [javac]                         ^
#16 10.84     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:537: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 10.84     [javac]       return new Double(v);
#16 10.84     [javac]              ^
#16 11.44     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2106: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 11.44     [javac]     return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#16 11.44     [javac]                                         ^
#16 11.44     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2113: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 11.44     [javac]     return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#16 11.44     [javac]                                         ^
#16 11.44     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2120: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 11.44     [javac]     return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#16 11.44     [javac]                                         ^
#16 11.65     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 11.65     [javac]                channelNames.put(new Integer(channelNames.size()), value);
#16 11.65     [javac]                                 ^
#16 11.85     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:618: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 11.85     [javac]       OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 11.85     [javac]                                                                    ^
#16 11.85     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 11.85     [javac]     StreamTokenizer st = new StreamTokenizer(in);
#16 11.85     [javac]                          ^
#16 11.95     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 11.95     [javac]     core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 11.95     [javac]                                                    ^
#16 11.95     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 11.95     [javac]   protected ReflectedUniverse r;
#16 11.95     [javac]             ^
#16 11.95     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 11.95     [javac]       r = new ReflectedUniverse();
#16 11.95     [javac]               ^
#16 12.05     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1043: warning: [deprecation] NM in UNITS has been deprecated
#16 12.05     [javac]           wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 12.05     [javac]                                                                               ^
#16 12.05     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#16 12.05     [javac]           sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 12.05     [javac]                                                                                ^
#16 12.05     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1088: warning: [deprecation] MM in UNITS has been deprecated
#16 12.05     [javac]         String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 12.05     [javac]                                                                                   ^
#16 12.05     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1089: warning: [deprecation] MM in UNITS has been deprecated
#16 12.05     [javac]         String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 12.05     [javac]                                                                                   ^
#16 12.05     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1108: warning: [deprecation] MM in UNITS has been deprecated
#16 12.05     [javac]         volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 12.05     [javac]                                                                                        ^
#16 12.05     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1112: warning: [deprecation] MM in UNITS has been deprecated
#16 12.05     [javac]         volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 12.05     [javac]                                                                                         ^
#16 12.05     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1118: warning: [deprecation] MM in UNITS has been deprecated
#16 12.05     [javac]         volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 12.05     [javac]                                                                                        ^
#16 12.05     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1166: warning: [deprecation] MM in UNITS has been deprecated
#16 12.05     [javac]             offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 12.05     [javac]                                                                                                               ^
#16 12.05     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1170: warning: [deprecation] MM in UNITS has been deprecated
#16 12.05     [javac]             offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 12.05     [javac]                                                                                                               ^
#16 12.15     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 12.15     [javac]       ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#16 12.15     [javac]               ^
#16 12.15     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#16 12.15     [javac]       ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#16 12.15     [javac]                                            ^
#16 12.15     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 12.15     [javac]       ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#16 12.15     [javac]               ^
#16 12.15     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#16 12.15     [javac]       ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#16 12.15     [javac]                                             ^
#16 12.25     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 12.25     [javac]       libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 12.25     [javac]                                        ^
#16 12.25     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:320: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 12.25     [javac]         doubleResult[i] = new Double(result.get(i).doubleValue());
#16 12.25     [javac]                           ^
#16 12.25     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:342: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 12.25     [javac]       result[i] = new Double(readNumber().doubleValue());
#16 12.25     [javac]                   ^
#16 12.25     [javac] Note: Some input files use unchecked or unsafe operations.
#16 12.25     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 12.25     [javac] 50 warnings
#16 12.25 
#16 12.25 formats-bsd.jar:
#16 12.25       [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 12.36 [resolver:install] Using default POM (ome:formats-bsd:8.1.0-SNAPSHOT)
#16 12.37 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.pom
#16 12.56 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.jar
#16 12.56 [resolver:install] Installing ome:formats-bsd:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 12.56 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 12.56 
#16 12.56 deps-formats-gpl:
#16 12.56 
#16 12.56 jar-formats-gpl:
#16 12.66      [echo] isSnapshot = true
#16 12.80 
#16 12.80 init-title:
#16 12.80      [echo] ----------=========== formats-gpl ===========----------
#16 12.80 
#16 12.80 init-timestamp:
#16 12.80 
#16 12.80 init:
#16 12.80 
#16 12.80 copy-resources:
#16 12.80     [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 12.81      [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 12.81 
#16 12.81 compile:
#16 13.19 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 13.43 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 13.46 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom (0 B at 0.0 KB/sec)
#16 13.52 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 13.54 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 13.55 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom (0 B at 0.0 KB/sec)
#16 13.56 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 13.57 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 13.58 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom (0 B at 0.0 KB/sec)
#16 13.62 [resolver:resolve] Resolving artifacts
#16 13.63 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 13.63 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 13.67 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 13.67 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 13.69 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar (0 B at 0.0 KB/sec)
#16 13.69 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar (0 B at 0.0 KB/sec)
#16 13.71     [javac] Compiling 174 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 13.91     [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 15.11     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.11     [javac] import loci.formats.codec.BitWriter;
#16 15.11     [javac]                          ^
#16 15.21     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.21     [javac] import loci.formats.codec.BitWriter;
#16 15.21     [javac]                          ^
#16 17.12     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#16 17.12     [javac]       LOGGER.trace("Parsing tokens: {}", tokens);
#16 17.12     [javac]                                          ^
#16 17.12     [javac]   cast to Object for a varargs call
#16 17.12     [javac]   cast to Object[] for a non-varargs call and to suppress this warning
#16 17.22     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1257: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 17.22     [javac]     BitWriter bits = null;
#16 17.22     [javac]     ^
#16 17.22     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1259: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 17.22     [javac]       bits = new BitWriter(planes[index].length / 8);
#16 17.22     [javac]                  ^
#16 17.52     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 17.52     [javac]     CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#16 17.52     [javac]                                                    ^
#16 17.92     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 17.92     [javac]     BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 17.92     [javac]     ^
#16 17.92     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 17.92     [javac]     BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 17.92     [javac]                          ^
#16 18.22     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:170: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 18.22     [javac]     Variable variable = group.findVariable(variableName);
#16 18.22     [javac]                              ^
#16 18.22     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:197: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 18.22     [javac]     Variable variable = group.findVariable(variableName);
#16 18.22     [javac]                              ^
#16 18.22     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:200: warning: [deprecation] getAttributes() in Variable has been deprecated
#16 18.22     [javac]       List<Attribute> attributes = variable.getAttributes();
#16 18.22     [javac]                                            ^
#16 18.22     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getName() in CDMNode has been deprecated
#16 18.22     [javac]       String groupName = group.getName();
#16 18.22     [javac]                               ^
#16 18.22     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:239: warning: [deprecation] getAttributes() in Group has been deprecated
#16 18.22     [javac]       List<Attribute> attributes = group.getAttributes();
#16 18.22     [javac]                                         ^
#16 18.22     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:247: warning: [deprecation] getName() in CDMNode has been deprecated
#16 18.22     [javac]         String variableName = variable.getName();
#16 18.22     [javac]                                       ^
#16 18.22     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:270: warning: [deprecation] findGroup(String) in Group has been deprecated
#16 18.22     [javac]       Group nextParent = parent.findGroup(token);
#16 18.22     [javac]                                ^
#16 18.22     [javac] Note: Some input files use unchecked or unsafe operations.
#16 18.22     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 18.22     [javac] 16 warnings
#16 18.22 
#16 18.22 formats-gpl.jar:
#16 18.22       [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 18.36 [resolver:install] Using default POM (ome:formats-gpl:8.1.0-SNAPSHOT)
#16 18.36 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.pom
#16 18.41 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.jar
#16 18.42 [resolver:install] Installing ome:formats-gpl:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 18.42 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 18.42 
#16 18.42 deps-bio-formats-plugins:
#16 18.42 
#16 18.42 jar-bio-formats-plugins:
#16 18.51      [echo] isSnapshot = true
#16 18.64 
#16 18.64 init-title:
#16 18.64      [echo] ----------=========== bio-formats_plugins ===========----------
#16 18.64 
#16 18.64 init-timestamp:
#16 18.64 
#16 18.64 init:
#16 18.64 
#16 18.64 copy-resources:
#16 18.64     [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 18.64      [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 18.65 
#16 18.65 compile:
#16 18.91 [resolver:resolve] Resolving artifacts
#16 18.92     [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 19.13     [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 19.93     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.93     [javac] import loci.common.ReflectedUniverse;
#16 19.93     [javac]                   ^
#16 20.03     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 20.03     [javac] import loci.common.ReflectedUniverse;
#16 20.03     [javac]                   ^
#16 20.43     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 20.43     [javac]     "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 20.43     [javac]                                      ^
#16 20.63     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 20.63     [javac]         ReflectedUniverse r = new ReflectedUniverse();
#16 20.63     [javac]         ^
#16 20.63     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 20.63     [javac]         ReflectedUniverse r = new ReflectedUniverse();
#16 20.63     [javac]                                   ^
#16 20.73     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 20.73     [javac]     ReflectedUniverse ru = new ReflectedUniverse();
#16 20.73     [javac]     ^
#16 20.73     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 20.73     [javac]     ReflectedUniverse ru = new ReflectedUniverse();
#16 20.73     [javac]                                ^
#16 21.22     [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 21.22     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 21.22     [javac] 8 warnings
#16 21.22 
#16 21.22 bio-formats-plugins.jar:
#16 21.23       [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 21.25 [resolver:install] Using default POM (ome:bio-formats_plugins:8.1.0-SNAPSHOT)
#16 21.26 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.pom
#16 21.26 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.jar
#16 21.26 [resolver:install] Installing ome:bio-formats_plugins:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 21.26 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 21.26 
#16 21.26 deps-bio-formats-tools:
#16 21.26 
#16 21.26 jar-bio-formats-tools:
#16 21.36      [echo] isSnapshot = true
#16 21.49 
#16 21.49 init-title:
#16 21.49      [echo] ----------=========== bio-formats-tools ===========----------
#16 21.49 
#16 21.49 init-timestamp:
#16 21.49 
#16 21.49 init:
#16 21.49 
#16 21.49 copy-resources:
#16 21.49     [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 21.49 
#16 21.49 compile:
#16 21.72 [resolver:resolve] Resolving artifacts
#16 21.73     [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 21.93     [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 23.03     [javac] 1 warning
#16 23.03 
#16 23.03 bio-formats-tools.jar:
#16 23.03       [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 23.04 [resolver:install] Using default POM (ome:bio-formats-tools:8.1.0-SNAPSHOT)
#16 23.04 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.pom
#16 23.04 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.jar
#16 23.04 [resolver:install] Installing ome:bio-formats-tools:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 23.04 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 23.05 
#16 23.05 deps-tests:
#16 23.05 
#16 23.05 jar-tests:
#16 23.15      [echo] isSnapshot = true
#16 23.28 
#16 23.28 init-title:
#16 23.28      [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 23.28 
#16 23.28 init-timestamp:
#16 23.28 
#16 23.28 init:
#16 23.28 
#16 23.28 copy-resources:
#16 23.28     [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 23.28 
#16 23.28 compile:
#16 23.57 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 23.65 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 23.66 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 24.08 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 24.65 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#16 24.67 [resolver:resolve] Resolving artifacts
#16 24.68 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 24.71 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 24.73 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 25.13 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 25.50 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 25.51     [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 25.71     [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 26.71     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:605: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 26.71     [javac]         int index = unflattenedReader.getCoreIndex();
#16 26.71     [javac]                                      ^
#16 26.71     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:606: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 26.71     [javac]         reader.setCoreIndex(index);
#16 26.71     [javac]               ^
#16 26.91     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2259: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 26.91     [javac]             config.setSeries(resolutionReader.getCoreIndex());
#16 26.91     [javac]                                              ^
#16 26.91     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2425: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 26.91     [javac]             config.setSeries(resolutionReader.getCoreIndex());
#16 26.91     [javac]                                              ^
#16 27.21     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 27.21     [javac]         FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 27.21     [javac]                                                    ^
#16 27.21     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 27.21     [javac]         FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 27.21     [javac]                                                    ^
#16 27.21     [javac] Note: Some input files use unchecked or unsafe operations.
#16 27.21     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 27.21     [javac] 7 warnings
#16 27.21 
#16 27.21 tests.jar:
#16 27.21       [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 27.22 [resolver:install] Using default POM (ome:test-suite:8.1.0-SNAPSHOT)
#16 27.23 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.pom
#16 27.30 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.jar
#16 27.30 [resolver:install] Installing ome:test-suite:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 27.30 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 27.30 
#16 27.30 jars:
#16 27.30 
#16 27.30 copy-jars:
#16 27.30 
#16 27.30 deps-formats-api:
#16 27.34      [echo] isSnapshot = true
#16 27.38 
#16 27.38 install-pom:
#16 27.51 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/pom-bio-formats-8.1.0-SNAPSHOT.pom
#16 27.51 [resolver:install] Installing ome:pom-bio-formats:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 27.55 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 27.55 
#16 27.55 jar-formats-api:
#16 27.63      [echo] isSnapshot = true
#16 27.76 
#16 27.76 init-title:
#16 27.76      [echo] ----------=========== formats-api ===========----------
#16 27.76 
#16 27.76 init-timestamp:
#16 27.76 
#16 27.76 init:
#16 27.76 
#16 27.76 copy-resources:
#16 27.76 
#16 27.76 compile:
#16 27.89 [resolver:resolve] Resolving artifacts
#16 27.90 
#16 27.90 formats-api.jar:
#16 27.91 [resolver:install] Using default POM (ome:formats-api:8.1.0-SNAPSHOT)
#16 27.92 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.pom
#16 27.92 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.jar
#16 27.92 [resolver:install] Installing ome:formats-api:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 27.92 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 27.92 
#16 27.92 deps-turbojpeg:
#16 27.92 
#16 27.92 jar-turbojpeg:
#16 28.00      [echo] isSnapshot = true
#16 28.12 
#16 28.12 init-title:
#16 28.12      [echo] ----------=========== turbojpeg ===========----------
#16 28.12 
#16 28.12 init-timestamp:
#16 28.12 
#16 28.12 init:
#16 28.12 
#16 28.12 copy-resources:
#16 28.12 
#16 28.12 compile:
#16 28.13 [resolver:resolve] Resolving artifacts
#16 28.13 
#16 28.13 jar:
#16 28.14 [resolver:install] Using default POM (ome:turbojpeg:8.1.0-SNAPSHOT)
#16 28.15 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.pom
#16 28.15 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.jar
#16 28.15 [resolver:install] Installing ome:turbojpeg:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 28.15 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 28.15 
#16 28.15 deps-formats-bsd:
#16 28.15 
#16 28.15 jar-formats-bsd:
#16 28.23      [echo] isSnapshot = true
#16 28.35 
#16 28.35 init-title:
#16 28.35      [echo] ----------=========== formats-bsd ===========----------
#16 28.35 
#16 28.35 init-timestamp:
#16 28.36 
#16 28.36 init:
#16 28.36 
#16 28.36 copy-resources:
#16 28.36 
#16 28.36 compile:
#16 28.56 [resolver:resolve] Resolving artifacts
#16 28.57 
#16 28.57 formats-bsd.jar:
#16 28.60 [resolver:install] Using default POM (ome:formats-bsd:8.1.0-SNAPSHOT)
#16 28.61 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.pom
#16 28.61 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.jar
#16 28.61 [resolver:install] Installing ome:formats-bsd:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 28.61 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 28.61 
#16 28.61 deps-formats-gpl:
#16 28.62 
#16 28.62 jar-formats-gpl:
#16 28.69      [echo] isSnapshot = true
#16 28.82 
#16 28.82 init-title:
#16 28.82      [echo] ----------=========== formats-gpl ===========----------
#16 28.82 
#16 28.82 init-timestamp:
#16 28.82 
#16 28.82 init:
#16 28.82 
#16 28.82 copy-resources:
#16 28.82 
#16 28.82 compile:
#16 29.04 [resolver:resolve] Resolving artifacts
#16 29.05 
#16 29.05 formats-gpl.jar:
#16 29.09 [resolver:install] Using default POM (ome:formats-gpl:8.1.0-SNAPSHOT)
#16 29.09 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.pom
#16 29.09 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.jar
#16 29.09 [resolver:install] Installing ome:formats-gpl:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 29.10 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 29.10 
#16 29.10 deps-bio-formats-plugins:
#16 29.10 
#16 29.10 jar-bio-formats-plugins:
#16 29.19      [echo] isSnapshot = true
#16 29.31 
#16 29.31 init-title:
#16 29.31      [echo] ----------=========== bio-formats_plugins ===========----------
#16 29.31 
#16 29.31 init-timestamp:
#16 29.31 
#16 29.31 init:
#16 29.31 
#16 29.31 copy-resources:
#16 29.31 
#16 29.31 compile:
#16 29.55 [resolver:resolve] Resolving artifacts
#16 29.56 
#16 29.56 bio-formats-plugins.jar:
#16 29.58 [resolver:install] Using default POM (ome:bio-formats_plugins:8.1.0-SNAPSHOT)
#16 29.58 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.pom
#16 29.58 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.jar
#16 29.58 [resolver:install] Installing ome:bio-formats_plugins:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 29.59 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 29.59 
#16 29.59 deps-bio-formats-tools:
#16 29.59 
#16 29.59 jar-bio-formats-tools:
#16 29.67      [echo] isSnapshot = true
#16 29.80 
#16 29.80 init-title:
#16 29.80      [echo] ----------=========== bio-formats-tools ===========----------
#16 29.80 
#16 29.80 init-timestamp:
#16 29.80 
#16 29.80 init:
#16 29.80 
#16 29.80 copy-resources:
#16 29.80 
#16 29.80 compile:
#16 30.03 [resolver:resolve] Resolving artifacts
#16 30.04 
#16 30.04 bio-formats-tools.jar:
#16 30.04 [resolver:install] Using default POM (ome:bio-formats-tools:8.1.0-SNAPSHOT)
#16 30.05 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.pom
#16 30.05 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.jar
#16 30.05 [resolver:install] Installing ome:bio-formats-tools:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 30.05 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 30.05 
#16 30.05 deps-tests:
#16 30.05 
#16 30.05 jar-tests:
#16 30.13      [echo] isSnapshot = true
#16 30.26 
#16 30.26 init-title:
#16 30.26      [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 30.26 
#16 30.26 init-timestamp:
#16 30.26 
#16 30.26 init:
#16 30.26 
#16 30.26 copy-resources:
#16 30.27 
#16 30.27 compile:
#16 30.50 [resolver:resolve] Resolving artifacts
#16 30.51 
#16 30.51 tests.jar:
#16 30.51 [resolver:install] Using default POM (ome:test-suite:8.1.0-SNAPSHOT)
#16 30.52 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.pom
#16 30.52 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.jar
#16 30.52 [resolver:install] Installing ome:test-suite:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 30.52 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 30.52 
#16 30.52 jars:
#16 30.52 
#16 30.52 tools:
#16 30.52      [echo] ----------=========== bioformats_package ===========----------
#16 30.61      [echo] isSnapshot = true
#16 30.82 
#16 30.82 init-timestamp:
#16 30.82 
#16 30.82 bundle:
#16 31.05 [resolver:resolve] Resolving artifacts
#16 31.06     [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.09     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.0.25-SNAPSHOT/ome-common-6.0.25-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.11     [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.14     [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.15     [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.21     [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.23     [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.28     [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.29     [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.51     [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.56     [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.58     [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.64     [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.65     [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.66     [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.67     [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.7/joda-time-2.12.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.90     [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.1-jre/guava-32.0.1-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.45     [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.45     [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.45     [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.46     [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.55     [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.55     [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.56     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.3.7-SNAPSHOT/ome-xml-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.62     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.3.7-SNAPSHOT/specification-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.67     [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.69     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.0.4-SNAPSHOT/ome-codecs-1.0.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.70     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.5-SNAPSHOT/ome-jai-0.1.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.84     [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.92     [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.95     [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.96     [unzip] Expanding: /home/build/.m2/repository/commons-lang/commons-lang/2.6/commons-lang-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.00     [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.02     [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.52     [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.54     [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.57     [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.7/commons-lang3-3.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.64     [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.75     [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.76     [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.78     [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.79     [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.07     [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.14     [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.20     [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.30     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/ome-mdbtools-5.3.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.32     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.3.8-SNAPSHOT/metakit-5.3.8-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.32     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/ome-poi-5.3.10-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.45     [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.46     [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.96     [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.97     [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.13/httpclient-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.09     [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.14     [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.13/httpmime-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.15     [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.16     [unzip] Expanding: /home/build/.m2/repository/commons-math/commons-math/1.2/commons-math-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.23     [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.27/aircompressor-0.27.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.26     [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.28.0/sqlite-jdbc-3.28.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.42     [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.43     [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.44     [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.45     [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.46     [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.49     [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.89     [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 36.01     [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 36.38       [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 41.81    [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 42.33 [resolver:install] Using default POM (ome:bioformats_package:8.1.0-SNAPSHOT)
#16 42.34 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.1.0-SNAPSHOT/bioformats_package-8.1.0-SNAPSHOT.pom
#16 42.37 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.1.0-SNAPSHOT/bioformats_package-8.1.0-SNAPSHOT.jar
#16 42.40 [resolver:install] Installing ome:bioformats_package:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 42.41 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 42.41 
#16 42.41 BUILD SUCCESSFUL
#16 42.41 Total time: 41 seconds
#16 DONE 47.0s

#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.1s

#18 exporting to image
#18 exporting layers
#18 exporting layers 3.5s done
#18 writing image sha256:8940feb5237013df38afda8fa396f4b65a856aef79d2600650688a67aadd049a done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#18 DONE 3.6s

 [33m1 warning found (use docker --debug to expand):
[0m - LegacyKeyValueFormat: "ENV key=value" should be used instead of legacy "ENV key value" format (line 30)
Finished: SUCCESS